Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Mon, 15 Feb 2021 15:18:58 +0100 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --with-openblas-dir=/opt/packages/openblas/0.2.13-gcc --download-mpich --with-debugging=0 PETSC_ARCH=arch-opt Working directory: /home/fbrarda/petsc Machine platform: uname_result(system='Linux', node='srvulx13', release='3.13.0-44-generic', version='#73-Ubuntu SMP Tue Dec 16 00:22:43 UTC 2014', machine='x86_64', processor='x86_64') Python version: 3.4.3 (default, Nov 12 2018, 22:25:49) [GCC 4.8.4] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/fbrarda/petsc/config/BuildSystem/config/framework.py:930) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:930) child config.utilities.macosFirewall 0.000013 ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/home/fbrarda/petsc/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking for program /usr/local/sbin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/sbin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux child config.utilities.debuggers 0.012645 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/home/fbrarda/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 14 #define PETSC_VERSION_SUBMINOR 4 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.003951 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/home/fbrarda/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000663 ================================================================================ TEST configureGit from config.sourceControl(/home/fbrarda/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/sbin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 1.9.1 ================================================================================ TEST configureMercurial from config.sourceControl(/home/fbrarda/petsc/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /sbin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/games/hg...not found Checking for program /usr/local/games/hg...not found Checking for program /usr/bin/anaconda2/bin/hg...not found Checking for program /opt/slurm/14.11.3/bin/hg...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/hg...not found Unable to find programs ['hg'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 'g_anaeig', 'lwp-mirror', 'lesspipe', 'dpkg-query', 'enchant', 'g_select_d', 'lspgpot', 'telnet', 'py3clean', 'dh_fixperms', 'g_rotmat_d', 'autogen', 'ompi-server', 'pygettext3', 'pdb3.4', 'chattr', 'printenv', 'ngettext', 'preconv', 'ldd', 'dpkg-source', 'gedit', 'g_lie', 'rpm', 'unlzma', 'xxd', 'uxterm', 'obminimize', 'clang-check-3.5', 'printf', 'g_confrms_d', 'top', 'ssh-agent', 'lsb_release', 'dbus-launch', 'setarch', 'grub-mkrelpath', 'x86_64-linux-gnu-gfortran-4.8', 'dpkg-split', 'on_ac_power', 'genbox_d', 'iceauth', 'g_spol_d', 'xlsclients', 'dh_installxfonts', 'sfparse', 'x86_64-linux-gnu-cpp-4.8', 'dotlockfile', 'wpa_passphrase', 'pldd', 'mysql_fix_extensions', 'gdebi', 'g_sorient_d', 'x86_64-linux-gnu-python-config', 'dh_pypy', 'dpkg-gencontrol', 'xpm2ps_d', 'orted', 'llvm-as-3.4', 'llvm-mc-3.4', 'emacs', 'splain', 'g_nmeig_d', 'aptitude-run-state-bundle', 'trjcat', 'aptitude-create-state-bundle', 'ncursesw5-config', 'f2py2.7', 'icu-config', 'gslj', 'info', 'etags', 'byobu-tmux', 'intltoolize', '*', 'dh_suidregister', 'pycompile', 'xfd', 'msgunfmt', 'gtbl', 'ri1.9.1', 'gracebat', 'git-shell', 'loadkeys', 'x86_64-linux-gnu-objdump', 'gcc-ar', 'fdf2fit', 'reset', 'logger', 'dh_gconf', 'sg', 'gconf-merge-tree', 'eneconv_d', 'rpmdb', 'join', 'gcov-4.8', 'dh_installdocs', 'savelog', 'rake1.9.1', 'llvm-diff', 'byobu-janitor', 'genion_d', 'xzcmp', 'x86_64-linux-gnu-gprof', 'llvm-ar', 'grub-syslinux2cfg', 'xmessage', 'svnlook', 'dpkg-checkbuilddeps', 'xhost', 'gcov-tool', 'nvidia-debugdump', 'traceroute6', 'x86_64-linux-gnu-python3.4m-config', 'c89', 'mpiexec.openmpi', 'dh_listpackages', 'prename', 'g_angle_d', 'w', 'g_mdmat', 'dbilogstrip', 'inxi', 'xdg-icon-resource', 'edit', 'byobu-screen', 'do_dssp_d', 'diff3', 'ntpsweep', 'x86_64-linux-gnu-gcc-4.9', 'setxkbmap', 'intltool-merge', 'uptime', 'pygettext2.7', 'dh_dkms', 'test', 'x86_64-linux-gnu-python3.4-config', 'dh_bash-completion', 'g_analyze', 'tr', 'basename', 'opal_wrapper', 'llvm-dis-3.4', 'opalcc', 'mdrun_d', 'unlink', 'grub-mknetdir', 'g_covar_d', 'ubuntu-support-status', 'xlsfonts', 'gpgv', 'llvm-diff-3.4', 'taskset', 'colrm', 'orte-top', 'munge', 'faked-tcp', 'g_sorient', 'wc', 'aptitude', 'x86_64-linux-gnu-elfedit', 'gtester', 'msgcmp', 'pathchk', 'mysqlshow', 'llvm-objdump-3.4', 'grace', 'glib-genmarshal', 'vi', 'python2.7', 'llvm-dis-3.5', 'llvm-profdata-3.5', 'envsubst', 'xzegrep', 'g_hydorder_d', 'pod2html', 'slabtop', 'xset', 'pilconvert', 'getfacl', 'dvipdf', 'stat', 'x86_64-linux-gnu-gcc', 'pkcheck', 'printerbanner', 'install', 'w3m', 'c++', 'g_protonate', 'g_sigeps_d', 'byobu-ugraph', 'byobu-keybindings', 'g_dielectric_d', 'update-gconf-defaults', 'mpif90.openmpi', 'gcc-ranlib-4.8', 'x86_64-linux-gnu-cpp-5', 'nslookup', 'rdoc', 'obgrep', 'x86_64-linux-gnu-gcc-ar', 'cvtenc', 'pdb2.7', 'g_spatial_d', 'alien', 'resize', 'dh_desktop', 'macho-dump', 'g_gyrate', 'llvm-config-3.4', 'gnome-help', 'mysql_waitpid', 'twistd', 'easy_install-3.4', 'readelf', 'grub-mkimage', 'dh_scour', 'gsbj', 'gspath', 'dpkg', 'fakeroot', 'colormgr', 'gdialog', 'g_potential', 'troff', 'make_ndx', 'zxpdf', 'pkaction', 'g_polystat_d', 'easy_install3', 'dh_installinit', 'gettextize', 'run-this-one', 'updatedb.mlocate', 'passwd', 'grub-editenv', 'llvm-as-3.5', 'factor', 'dh_translations', 'vim.tiny', 'xsetpointer', 'dh_perl', 'xkbprint', 'g_sham_d', 'select-editor', 'llvm-nm-3.5', 'debconf-escape', 'llvm-rtdyld-3.4', 'prtstat', 'g_dyndom_d', 'gsettings-schema-convert', 'ntfsdecrypt', 'update-perl-sax-parsers', 'aubrsync', 'g_h2order_d', 'g_sas', 'x86_64-linux-gnu-gcov-4.9', 'g_hbond_d', 'ionice', 'dh_installdeb', 'chrt', 'x86_64-linux-gnu-objcopy', 'infotocap', 'pinky', 'ftp', 'ptar', 'getconf', 'pfbtopfa', 'see', 'rpmbuild', 'setpci', 'gtf', 'pilfont.py', 'x-terminal-emulator', 'nroff', 'obrotate', 'renice', 'logname', 'podselect', 'g_rotmat', 'x86_64-linux-gnu-gcc-nm-4.8', 'newgrp', 'dh_installcron', 'unzip', 'head', 'dpkg-parsechangelog', 'ssh-copy-id', 'gview', 'luit', 'g_dist_d', 'shred', 'dh_autotools-dev_updateconfig', 'Xorg', 'g_helix_d', 'debconf-set-selections', 'g_sgangle', 'mail-unlock', 'x86_64-linux-gnu-gcc-nm-5', 'byobu-disable', 'tracepath', 'rcp', 'last', 'word-list-compress', 'ntptrace', 'utmpdump', 'infocmp', 'llvm-ar-3.4', 'which', 'mysqlcheck', 'chcon', 'hexdump', 'autom4te', 'x86_64-linux-gnu-gcc-ranlib', 'lspci', 'xkeystone', 'R', 'bsd-mailx', 'col', 'gsnd', 'g_rmsf_d', 'calendar', 'g_helixorient_d', 'gvim', 'obprobe', 'g_rmsf', 'lastb', 'm4', 'rvim', 'most', 'nice', 'g_bond', 'podchecker', 'make_ndx_d', 'file', 'cvt', 'dig', 'gpic', 'dpkg-scanpackages', 'msginit', 'xmgrace', 'dh_gencontrol', 'trjorder', 'dh_installmanpages', 'ruby', 'apt-mark', 'chardetect3', 'nvidia-smi', 'byobu-status-detail', 'usbhid-dump', 'aptitude-curses', 'zsoelim', 'mysqlrepair', 'g_bundle', 'g_vanhove_d', 'testrb', 'python3.4m', 'rpmverify', 'x86_64-linux-gnu-ld', 'x86_64-linux-gnu-gcov', 'aubusy', 'orte-clean', 'smem', 'c_rehash', 'dpkg-distaddfile', 'xsubpp', 'byobu-launch', 'select-default-iwrap', 'chardet3', 'mailx', 'lzdiff', 'irb', 'fold', 'python-config', 'sudoedit', 'unicode_stop', 'lessecho', 'add-apt-repository', 'dpkg-vendor', 'xdg-mime', 'py3versions', 'debconf-updatepo', 'pydoc2.7', 'f2py3', 'dh_installwm', 'llvm-cov-3.4', 'g_rmsdist', 'hsmarkdown', 'pod2man', 'po2debconf', 'dh_auto_install', 'listres', 'dh_testdir', 'hwe-support-status', 'grog', 'xpdf', '2to3', 'nosetests3', 'dbiproxy', 'g_x2top', 'x86_64-linux-gnu-strip', 'whatis', 'python3m-config', 'vmstat', 'pkill', 'xml2-config', 'llvm-link-3.4', 'llvm-ld', 'pilprint.py', 'bcp', 'g_tune_pme_d', 'x86_64-linux-gnu-addr2line', 'opentool', 'irb1.9.1', 'ispell-wrapper', 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'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.sourceControl 0.011169 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/home/fbrarda/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Running Executable WITHOUT threads to time it out Executing: ['git', 'describe', '--match=v*'] stdout: v3.14.4-6-g7216cc8 Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 7216cc82c7c77360b9cc458e60576a0664f67e19 Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-02-10 16:45:16 +0000 Running Executable WITHOUT threads to time it out Executing: ['git', 'branch'] stdout: * release Defined "VERSION_GIT" to ""v3.14.4-6-g7216cc8"" Defined "VERSION_DATE_GIT" to ""2021-02-10 16:45:16 +0000"" Defined "VERSION_BRANCH_GIT" to ""release"" child PETSc.options.petscclone 0.022010 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/home/fbrarda/petsc/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/home/fbrarda/petsc/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: arch-opt/lib/petsc/conf/configure-hash Deleting configure hash file: arch-opt/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-opt/lib/petsc/conf/configure-hash child PETSc.options.arch 0.027550 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/home/fbrarda/petsc/config/PETSc/options/installDir.py:39) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/home/fbrarda/petsc/arch-opt" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/home/fbrarda/petsc/config/PETSc/options/installDir.py:85) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/home/fbrarda/petsc/config/PETSc/options/installDir.py:78) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/home/fbrarda/petsc/config/PETSc/options/installDir.py:62) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/fbrarda/petsc/arch-opt/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/home/fbrarda/petsc/config/PETSc/options/installDir.py:98) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.031435 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/home/fbrarda/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/home/fbrarda/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000747 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/home/fbrarda/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.001272 ================================================================================ TEST printEnvVariables from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1907) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1907) **** printenv **** MODULESHOME=/opt/Modules/3.2.10 BASH_FUNC_module%%=() { eval `/opt/Modules/$MODULE_VERSION/bin/modulecmd bash $*` } _=./configure MODULEPATH=/opt/Modules/versions/:/opt/Modules/$MODULE_VERSION/modulefiles SHLVL=1 SHELL=/bin/bash LOGNAME=fbrarda LANGUAGE=en_US:en MODULE_VERSION_STACK=3.2.10 PWD=/home/fbrarda/petsc LESSOPEN=| /usr/bin/lesspipe %s SSH_CLIENT=10.112.0.1 51280 22 TERM=xterm-256color MAIL=/var/mail/fbrarda USER=fbrarda PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/bin/anaconda2/bin:/opt/slurm/14.11.3/bin XDG_SESSION_ID=5874 SINFO_FORMAT=%10P %.5a %.12l %.8D %.6t %.10N %.7G %.15C LOADEDMODULES= CPPFLAGS=-I/home/fbrarda/cmdstan-petsc/stan/lib/stan_math/lib/boost_1.72.0 CONDA_SHLVL=0 SQUEUE_FORMAT=%8i %15u %.9P %.14j %.8T %.12M %.4D %.3C %.8b %.20e %r LD_LIBRARY_PATH=:/opt/slurm/14.11.3/lib CPATH=:/opt/slurm/14.11.3/include/slurm OLDPWD=/home/fbrarda HOME=/home/fbrarda LIBRARY_PATH=:/opt/slurm/14.11.3/lib SSH_TTY=/dev/pts/1 SSH_CONNECTION=10.112.0.1 51280 10.112.10.5 22 XDG_RUNTIME_DIR=/run/user/1012 LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36: LIBS=-L/home/fbrarda/cmdstan-petsc/stan/lib/stan_math/lib/boost_1.72.0/stage/lib MODULE_VERSION=3.2.10 LANG=en_US.UTF-8 LESSCLOSE=/usr/bin/lesspipe %s %s ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1914) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1914) =============================================================================== ***** WARNING: CPPFLAGS (set to -I/home/fbrarda/cmdstan-petsc/stan/lib/stan_math/lib/boost_1.72.0) found in environment variables - ignoring use ./configure CPPFLAGS=$CPPFLAGS if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: LIBS (set to -L/home/fbrarda/cmdstan-petsc/stan/lib/stan_math/lib/boost_1.72.0/stage/lib) found in environment variables - ignoring use ./configure LIBS=$LIBS if you really want to use that value ****** =============================================================================== ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1944) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1944) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1877) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1877) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1898) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1898) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:479) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:479) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPCCFLAGS to Initialized HIPCCFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPCC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:660) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:660) Locate a functional C compiler Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" All intermediate test results are stored in /tmp/petsc-l6ax4d0t All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.setCompilers Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Testing executable /tmp/petsc-l6ax4d0t/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: gcc --version stdout: gcc (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:699) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:699) Locate a functional C preprocessor Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CPP" to "gcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:735) Locate a functional CUDA compiler Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/local/games/nvcc...not found Checking for program /usr/bin/anaconda2/bin/nvcc...not found Checking for program /opt/slurm/14.11.3/bin/nvcc...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 'g_anaeig', 'lwp-mirror', 'lesspipe', 'dpkg-query', 'enchant', 'g_select_d', 'lspgpot', 'telnet', 'py3clean', 'dh_fixperms', 'g_rotmat_d', 'autogen', 'ompi-server', 'pygettext3', 'pdb3.4', 'chattr', 'printenv', 'ngettext', 'preconv', 'ldd', 'dpkg-source', 'gedit', 'g_lie', 'rpm', 'unlzma', 'xxd', 'uxterm', 'obminimize', 'clang-check-3.5', 'printf', 'g_confrms_d', 'top', 'ssh-agent', 'lsb_release', 'dbus-launch', 'setarch', 'grub-mkrelpath', 'x86_64-linux-gnu-gfortran-4.8', 'dpkg-split', 'on_ac_power', 'genbox_d', 'iceauth', 'g_spol_d', 'xlsclients', 'dh_installxfonts', 'sfparse', 'x86_64-linux-gnu-cpp-4.8', 'dotlockfile', 'wpa_passphrase', 'pldd', 'mysql_fix_extensions', 'gdebi', 'g_sorient_d', 'x86_64-linux-gnu-python-config', 'dh_pypy', 'dpkg-gencontrol', 'xpm2ps_d', 'orted', 'llvm-as-3.4', 'llvm-mc-3.4', 'emacs', 'splain', 'g_nmeig_d', 'aptitude-run-state-bundle', 'trjcat', 'aptitude-create-state-bundle', 'ncursesw5-config', 'f2py2.7', 'icu-config', 'gslj', 'info', 'etags', 'byobu-tmux', 'intltoolize', '*', 'dh_suidregister', 'pycompile', 'xfd', 'msgunfmt', 'gtbl', 'ri1.9.1', 'gracebat', 'git-shell', 'loadkeys', 'x86_64-linux-gnu-objdump', 'gcc-ar', 'fdf2fit', 'reset', 'logger', 'dh_gconf', 'sg', 'gconf-merge-tree', 'eneconv_d', 'rpmdb', 'join', 'gcov-4.8', 'dh_installdocs', 'savelog', 'rake1.9.1', 'llvm-diff', 'byobu-janitor', 'genion_d', 'xzcmp', 'x86_64-linux-gnu-gprof', 'llvm-ar', 'grub-syslinux2cfg', 'xmessage', 'svnlook', 'dpkg-checkbuilddeps', 'xhost', 'gcov-tool', 'nvidia-debugdump', 'traceroute6', 'x86_64-linux-gnu-python3.4m-config', 'c89', 'mpiexec.openmpi', 'dh_listpackages', 'prename', 'g_angle_d', 'w', 'g_mdmat', 'dbilogstrip', 'inxi', 'xdg-icon-resource', 'edit', 'byobu-screen', 'do_dssp_d', 'diff3', 'ntpsweep', 'x86_64-linux-gnu-gcc-4.9', 'setxkbmap', 'intltool-merge', 'uptime', 'pygettext2.7', 'dh_dkms', 'test', 'x86_64-linux-gnu-python3.4-config', 'dh_bash-completion', 'g_analyze', 'tr', 'basename', 'opal_wrapper', 'llvm-dis-3.4', 'opalcc', 'mdrun_d', 'unlink', 'grub-mknetdir', 'g_covar_d', 'ubuntu-support-status', 'xlsfonts', 'gpgv', 'llvm-diff-3.4', 'taskset', 'colrm', 'orte-top', 'munge', 'faked-tcp', 'g_sorient', 'wc', 'aptitude', 'x86_64-linux-gnu-elfedit', 'gtester', 'msgcmp', 'pathchk', 'mysqlshow', 'llvm-objdump-3.4', 'grace', 'glib-genmarshal', 'vi', 'python2.7', 'llvm-dis-3.5', 'llvm-profdata-3.5', 'envsubst', 'xzegrep', 'g_hydorder_d', 'pod2html', 'slabtop', 'xset', 'pilconvert', 'getfacl', 'dvipdf', 'stat', 'x86_64-linux-gnu-gcc', 'pkcheck', 'printerbanner', 'install', 'w3m', 'c++', 'g_protonate', 'g_sigeps_d', 'byobu-ugraph', 'byobu-keybindings', 'g_dielectric_d', 'update-gconf-defaults', 'mpif90.openmpi', 'gcc-ranlib-4.8', 'x86_64-linux-gnu-cpp-5', 'nslookup', 'rdoc', 'obgrep', 'x86_64-linux-gnu-gcc-ar', 'cvtenc', 'pdb2.7', 'g_spatial_d', 'alien', 'resize', 'dh_desktop', 'macho-dump', 'g_gyrate', 'llvm-config-3.4', 'gnome-help', 'mysql_waitpid', 'twistd', 'easy_install-3.4', 'readelf', 'grub-mkimage', 'dh_scour', 'gsbj', 'gspath', 'dpkg', 'fakeroot', 'colormgr', 'gdialog', 'g_potential', 'troff', 'make_ndx', 'zxpdf', 'pkaction', 'g_polystat_d', 'easy_install3', 'dh_installinit', 'gettextize', 'run-this-one', 'updatedb.mlocate', 'passwd', 'grub-editenv', 'llvm-as-3.5', 'factor', 'dh_translations', 'vim.tiny', 'xsetpointer', 'dh_perl', 'xkbprint', 'g_sham_d', 'select-editor', 'llvm-nm-3.5', 'debconf-escape', 'llvm-rtdyld-3.4', 'prtstat', 'g_dyndom_d', 'gsettings-schema-convert', 'ntfsdecrypt', 'update-perl-sax-parsers', 'aubrsync', 'g_h2order_d', 'g_sas', 'x86_64-linux-gnu-gcov-4.9', 'g_hbond_d', 'ionice', 'dh_installdeb', 'chrt', 'x86_64-linux-gnu-objcopy', 'infotocap', 'pinky', 'ftp', 'ptar', 'getconf', 'pfbtopfa', 'see', 'rpmbuild', 'setpci', 'gtf', 'pilfont.py', 'x-terminal-emulator', 'nroff', 'obrotate', 'renice', 'logname', 'podselect', 'g_rotmat', 'x86_64-linux-gnu-gcc-nm-4.8', 'newgrp', 'dh_installcron', 'unzip', 'head', 'dpkg-parsechangelog', 'ssh-copy-id', 'gview', 'luit', 'g_dist_d', 'shred', 'dh_autotools-dev_updateconfig', 'Xorg', 'g_helix_d', 'debconf-set-selections', 'g_sgangle', 'mail-unlock', 'x86_64-linux-gnu-gcc-nm-5', 'byobu-disable', 'tracepath', 'rcp', 'last', 'word-list-compress', 'ntptrace', 'utmpdump', 'infocmp', 'llvm-ar-3.4', 'which', 'mysqlcheck', 'chcon', 'hexdump', 'autom4te', 'x86_64-linux-gnu-gcc-ranlib', 'lspci', 'xkeystone', 'R', 'bsd-mailx', 'col', 'gsnd', 'g_rmsf_d', 'calendar', 'g_helixorient_d', 'gvim', 'obprobe', 'g_rmsf', 'lastb', 'm4', 'rvim', 'most', 'nice', 'g_bond', 'podchecker', 'make_ndx_d', 'file', 'cvt', 'dig', 'gpic', 'dpkg-scanpackages', 'msginit', 'xmgrace', 'dh_gencontrol', 'trjorder', 'dh_installmanpages', 'ruby', 'apt-mark', 'chardetect3', 'nvidia-smi', 'byobu-status-detail', 'usbhid-dump', 'aptitude-curses', 'zsoelim', 'mysqlrepair', 'g_bundle', 'g_vanhove_d', 'testrb', 'python3.4m', 'rpmverify', 'x86_64-linux-gnu-ld', 'x86_64-linux-gnu-gcov', 'aubusy', 'orte-clean', 'smem', 'c_rehash', 'dpkg-distaddfile', 'xsubpp', 'byobu-launch', 'select-default-iwrap', 'chardet3', 'mailx', 'lzdiff', 'irb', 'fold', 'python-config', 'sudoedit', 'unicode_stop', 'lessecho', 'add-apt-repository', 'dpkg-vendor', 'xdg-mime', 'py3versions', 'debconf-updatepo', 'pydoc2.7', 'f2py3', 'dh_installwm', 'llvm-cov-3.4', 'g_rmsdist', 'hsmarkdown', 'pod2man', 'po2debconf', 'dh_auto_install', 'listres', 'dh_testdir', 'hwe-support-status', 'grog', 'xpdf', '2to3', 'nosetests3', 'dbiproxy', 'g_x2top', 'x86_64-linux-gnu-strip', 'whatis', 'python3m-config', 'vmstat', 'pkill', 'xml2-config', 'llvm-link-3.4', 'llvm-ld', 'pilprint.py', 'bcp', 'g_tune_pme_d', 'x86_64-linux-gnu-addr2line', 'opentool', 'irb1.9.1', 'ispell-wrapper', 'pager', 'gvimdiff', 'gcc-ranlib-5', 'python3.4', 'g_rotacf_d', 'addr2line', 'ccze-cssdump', 'expand', 'clang-tblgen-3.5', 'dh_lintian', 'xmlparse', 'updatedb', 'mysqldumpslow', 'iptables-xml', 'setkeycodes', 'g++', 'ebrowse', 'grub-file', 'captoinfo', 'byobu-launcher', 'tapconvert', 'ld', 'orteCC', 'gcc-nm', 'pkgdata', 'uconv', 'msgmerge', 'clang-query-3.5', 'nosetests-2.7', 'xzgrep', 'enchant-lsmod', 'HTMLLinker', 'strace', 'rev', 'nohup', 'run-one-until-failure', 'dpkg-divert', 'localedef', 'zipcloak', 'x86_64-linux-gnu-dwp', 'remunge', 'g_order', 'mpif90', 'getdefs', 'manpath', 'pkg-config', 'h2xs', 'md5sum', 'emacsclient.emacs24', 'g_enemat', 'python3.4-config', 'linux-update-symlinks', 'pico', 'dh_compress', 'gdbus', 'g_rms_d', 'script', 'recode-sr-latin', 'zipdetails', 'llvm-readobj-3.5', 'scan-view-3.5', 'svn-rep-sharing-stats', 'os-prober', 'svnserve', 'g_disre', 'unzipsfx', 'bdftopcf', 'apropos', 'xdg-email', 'encguess', 'lastlog', 'obconformer', 'anaconda2', 'mysqldump', 'POST', 'byobu-ulevel', 'rgview', 'llvm-symbolizer-3.4', 'sensible-browser', 'lwp-dump', 'grub-kbdcomp', 'vimtutor', 'g_wham_d', 'apt-sortpkgs', 'fonttosfnt', 'apport-cli', 'ctstat', 'rpmgraph', 'strip', 'svnsync', 'g_cluster_d', 'mysqladmin', 'llvm-mcmarkup-3.5', 'comm', 'llvm-cov-3.5', 'xdg-settings', 'lxterm', 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'make_strings', 'myisampack', 'ar', 'x86_64-linux-gnu-g++', 'lsipc', 'rpm2cpio', 'c89-gcc', 'apt-config', 'ngmx_d', 'patch', 'xpm2ps', 'rename', 'peekfd', 'xsetroot', 'fc-list', 'mysql_config', 'aspell-import', 'zeitgeist-datahub', 'ssh-import-id-gh', 'llvm-config', 'genrestr', 'ssh-import-id-lp', 'mysql_zap', 'ssh-keyscan', 'gettext.sh', 'openbox', 'g_h2order', 'eview', 'deb-systemd-invoke', 'grub-glue-efi', 'htop', 'unexpand', 'macho-dump-3.5', 'expr', 'gcc-4.9', 'g_densorder', 'cpan5.22-x86_64-linux-gnu', 'g_densmap_d', 'from', 'llvm-diff-3.5', 'xstdcmap', 'autoreconf', 'x86_64-linux-gnu-cpp-4.9', 'plog', 'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 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'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:775) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:775) Locate a functional CUDA preprocessor ================================================================================ TEST checkHIPCompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:809) TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:809) Locate a functional HIP compiler Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /sbin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /usr/games/hipcc...not found Checking for program /usr/local/games/hipcc...not found Checking for program /usr/bin/anaconda2/bin/hipcc...not found Checking for program /opt/slurm/14.11.3/bin/hipcc...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/hipcc...not found Unable to find programs ['hipcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 'g_anaeig', 'lwp-mirror', 'lesspipe', 'dpkg-query', 'enchant', 'g_select_d', 'lspgpot', 'telnet', 'py3clean', 'dh_fixperms', 'g_rotmat_d', 'autogen', 'ompi-server', 'pygettext3', 'pdb3.4', 'chattr', 'printenv', 'ngettext', 'preconv', 'ldd', 'dpkg-source', 'gedit', 'g_lie', 'rpm', 'unlzma', 'xxd', 'uxterm', 'obminimize', 'clang-check-3.5', 'printf', 'g_confrms_d', 'top', 'ssh-agent', 'lsb_release', 'dbus-launch', 'setarch', 'grub-mkrelpath', 'x86_64-linux-gnu-gfortran-4.8', 'dpkg-split', 'on_ac_power', 'genbox_d', 'iceauth', 'g_spol_d', 'xlsclients', 'dh_installxfonts', 'sfparse', 'x86_64-linux-gnu-cpp-4.8', 'dotlockfile', 'wpa_passphrase', 'pldd', 'mysql_fix_extensions', 'gdebi', 'g_sorient_d', 'x86_64-linux-gnu-python-config', 'dh_pypy', 'dpkg-gencontrol', 'xpm2ps_d', 'orted', 'llvm-as-3.4', 'llvm-mc-3.4', 'emacs', 'splain', 'g_nmeig_d', 'aptitude-run-state-bundle', 'trjcat', 'aptitude-create-state-bundle', 'ncursesw5-config', 'f2py2.7', 'icu-config', 'gslj', 'info', 'etags', 'byobu-tmux', 'intltoolize', '*', 'dh_suidregister', 'pycompile', 'xfd', 'msgunfmt', 'gtbl', 'ri1.9.1', 'gracebat', 'git-shell', 'loadkeys', 'x86_64-linux-gnu-objdump', 'gcc-ar', 'fdf2fit', 'reset', 'logger', 'dh_gconf', 'sg', 'gconf-merge-tree', 'eneconv_d', 'rpmdb', 'join', 'gcov-4.8', 'dh_installdocs', 'savelog', 'rake1.9.1', 'llvm-diff', 'byobu-janitor', 'genion_d', 'xzcmp', 'x86_64-linux-gnu-gprof', 'llvm-ar', 'grub-syslinux2cfg', 'xmessage', 'svnlook', 'dpkg-checkbuilddeps', 'xhost', 'gcov-tool', 'nvidia-debugdump', 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'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /sbin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /usr/games/opt/rocm/bin/hipcc...not found Checking for program /usr/local/games/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/anaconda2/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/slurm/14.11.3/bin/opt/rocm/bin/hipcc...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found Unable to find programs ['opt/rocm/bin/hipcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 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'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 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'xterm', 'json_pp', 'dh_scrollkeeper', 'gvimtutor', 'perldoc', 'ntpq', 'poff', 'ex', 'llvm-stress-3.4', 'gs', 'pon', 'gcc-nm-4.9', 'dh_installifupdown', 'dh_ucf', 'report-hw', 'docker-containerd', 'xkbcomp', 'ubuntu-bug', 'getkeycodes', 'obconf', 'docker-proxy', 'g_dielectric', 'g_current', 'g_select', 'gprof', 'dgawk', 'babel', 'loadunimap', 'erb', 'dockerd', 'pkttyagent', 'demux', 'perlivp', 'dh_strip', 'cmp', 'g_luck', 'g_bar_d', 'make_strings', 'myisampack', 'ar', 'x86_64-linux-gnu-g++', 'lsipc', 'rpm2cpio', 'c89-gcc', 'apt-config', 'ngmx_d', 'patch', 'xpm2ps', 'rename', 'peekfd', 'xsetroot', 'fc-list', 'mysql_config', 'aspell-import', 'zeitgeist-datahub', 'ssh-import-id-gh', 'llvm-config', 'genrestr', 'ssh-import-id-lp', 'mysql_zap', 'ssh-keyscan', 'gettext.sh', 'openbox', 'g_h2order', 'eview', 'deb-systemd-invoke', 'grub-glue-efi', 'htop', 'unexpand', 'macho-dump-3.5', 'expr', 'gcc-4.9', 'g_densorder', 'cpan5.22-x86_64-linux-gnu', 'g_densmap_d', 'from', 'llvm-diff-3.5', 'xstdcmap', 'autoreconf', 'x86_64-linux-gnu-cpp-4.9', 'plog', 'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkHIPPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:845) TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:845) Placeholder for now ================================================================================ TEST checkSYCLCompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:866) TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:866) Locate a functional SYCL compiler ================================================================================ TEST checkSYCLPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:892) TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:892) Placeholder for now ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:981) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:981) Locate a functional Cxx compiler Checking for program /usr/local/sbin/g++...not found Checking for program /usr/local/bin/g++...not found Checking for program /usr/sbin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXX" to "g++" Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Testing executable /tmp/petsc-l6ax4d0t/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: g++ --version stdout: g++ (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1022) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1022) Locate a functional Cxx preprocessor Checking for program /usr/local/sbin/g++...not found Checking for program /usr/local/bin/g++...not found Checking for program /usr/sbin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXXPP" to "g++ -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: g++ -E -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1123) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1123) Locate a functional Fortran compiler Checking for program /usr/local/sbin/gfortran...not found Checking for program /usr/local/bin/gfortran...not found Checking for program /usr/sbin/gfortran...not found Checking for program /usr/bin/gfortran...found Defined make macro "FC" to "gfortran" Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Testing executable /tmp/petsc-l6ax4d0t/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: gfortran --version stdout: GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1160) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1160) Locate a functional Fortran preprocessor Checking for program /usr/local/sbin/gfortran...not found Checking for program /usr/local/bin/gfortran...not found Checking for program /usr/sbin/gfortran...not found Checking for program /usr/bin/gfortran...found Defined make macro "FPP" to "gfortran -E" Deleting "FPP" Checking for program /usr/local/sbin/gfortran...not found Checking for program /usr/local/bin/gfortran...not found Checking for program /usr/sbin/gfortran...not found Checking for program /usr/bin/gfortran...found Defined make macro "FPP" to "gfortran --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1182) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1182) Make sure fortran comment "!" works Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1317) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1317) ================================================================================ TEST checkArchiver from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1416) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-l6ax4d0t/config.setCompilers/libconf1.a /tmp/petsc-l6ax4d0t/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /tmp/petsc-l6ax4d0t/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-l6ax4d0t/config.setCompilers/libconf1.a /tmp/petsc-l6ax4d0t/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib /tmp/petsc-l6ax4d0t/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -L/tmp/petsc-l6ax4d0t/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkArchiverRecipeArgfile from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1480) TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1480) Checks if AR handles @ notation Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1560) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1560) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking shared linker gcc using flags ['-shared'] Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -shared /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o: error adding symbols: Bad value collect2: error: ld returned 1 exit status Rejected C compiler flag because it was not compatible with shared linker gcc using flags ['-shared'] Running Executable WITHOUT threads to time it out Executing: gcc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and Trying C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -shared -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -L/tmp/petsc-l6ax4d0t/config.setCompilers -lconftest Using shared linker gcc with flags ['-shared'] and library extension so Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1260) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1260) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o: error adding symbols: Bad value collect2: error: ld returned 1 exit status Rejected Cxx compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: g++ --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and Trying Cxx compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Trying FC for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o: relocation R_X86_64_32 against `xx_' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o: error adding symbols: Bad value collect2: error: ld returned 1 exit status Rejected FC compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: gfortran --help | head -n 20 stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and Trying FC compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC for PIC code ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1672) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1672) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: gcc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wl,-rpath,/home/fbrarda/petsc -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/fbrarda/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: gcc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wl,-rpath,/home/fbrarda/petsc /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/fbrarda/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: gcc -V Trying FC linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wl,-rpath,/home/fbrarda/petsc -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/fbrarda/petsc ================================================================================ TEST checkLibC from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1711) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1711) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1757) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1757) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.libraries Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking dynamic linker gcc using flags ['-shared'] Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "DYNAMICLINKER" to "gcc" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -shared -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -ldl Using dynamic linker gcc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1806) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1806) Output module data as defines and substitutions Substituting "CC" with "gcc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "gcc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "g++" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "g++ -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "gfortran" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 2.972498 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/home/fbrarda/petsc/config/PETSc/options/sharedLibraries.py:31) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:31) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/home/fbrarda/petsc/config/PETSc/options/sharedLibraries.py:47) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:47) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Running Executable WITHOUT threads to time it out Executing: gcc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/home/fbrarda/petsc/config/PETSc/options/sharedLibraries.py:92) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/home/fbrarda/petsc/config/PETSc/options/sharedLibraries.py:98) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.014453 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/home/fbrarda/petsc/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.001496 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/fbrarda/petsc/config/BuildSystem/config/compilerFlags.py:81) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:81) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413" Defined make macro "MPICC_SHOW" to "Unavailable" Trying C compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Defined make macro "MPICC_SHOW" to "Unavailable" Trying C compiler flag -g Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g Trying C compiler flag -O Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O Defined make macro "Cxx_VERSION" to "g++ (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413" Defined make macro "MPICXX_SHOW" to "Unavailable" Trying Cxx compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Defined make macro "MPICXX_SHOW" to "Unavailable" Trying Cxx compiler flag -g Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Trying Cxx compiler flag -O Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O Defined make macro "FC_VERSION" to "GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4" Defined make macro "MPIFC_SHOW" to "Unavailable" Trying FC compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -ffree-line-length-0 /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Defined make macro "MPIFC_SHOW" to "Unavailable" Trying FC compiler flag -g Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -g Trying FC compiler flag -O Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -O child config.compilerFlags 0.970448 Running Executable WITHOUT threads to time it out Executing: gcc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkC99Flag from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:1416) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1416) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: ================================================================================ TEST checkRestrict from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:156) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: gcc -V All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.compilers Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.compilers/conftest.c:5:20: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:411) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:411) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:126) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:126) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:422) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:422) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:220) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:220) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:1367) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1367) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -MMD -MP /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -MMD -MP /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkRestrict from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:156) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: gcc -V Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:5:20: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxDialect from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:469) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:469) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: In file included from /usr/include/c++/5/random:35:0, from /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:4: /usr/include/c++/5/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support \ ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:7:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:7:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:7:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:12:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:13:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:14:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:14:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:15:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:15:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:18:11: error: ‘constexpr’ was not declared in this scope constexpr std::complex I(0.0,1.0); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:19:11: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat] auto lambda = [](auto x, auto y) {return x + y;}; ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:19:16: error: ‘lambda’ does not name a type auto lambda = [](auto x, auto y) {return x + y;}; ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:20:28: error: ‘lambda’ was not declared in this scope return lambda(3,4); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/5/random:35:0, from /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:4: /usr/include/c++/5/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support \ ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:7:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:7:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:7:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:12:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:13:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:14:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:14:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:15:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:15:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:18:11: error: ‘constexpr’ was not declared in this scope constexpr std::complex I(0.0,1.0); ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:19:11: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat] auto lambda = [](auto x, auto y) {return x + y;}; ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:19:16: error: ‘lambda’ does not name a type auto lambda = [](auto x, auto y) {return x + y;}; ^ /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc:20:28: error: ‘lambda’ was not declared in this scope return lambda(3,4); ^ PETSc Error: No output file produced checkCxxDialect: checking CXX14 with flag: -std=gnu++14 Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -std=gnu++14 -fPIC /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:441) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:441) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:141) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:141) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:553) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:553) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.compilers/confc.o: In function `asub()': /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `std::cout' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-l6ax4d0t/config.compilers/confc.o: In function `__static_initialization_and_destruction_0': /usr/include/c++/5/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/include/c++/5/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-l6ax4d0t/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-l6ax4d0t/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl C++ libraries are not needed when using FC linker Running Executable WITHOUT threads to time it out Executing: g++ -V ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:860) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:860) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Running Executable WITHOUT threads to time it out Executing: gfortran --version stdout: GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Defined "FORTRAN_CHARLEN_T" to "int" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:898) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:898) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.compilers/conftest.o: In function `MAIN__': /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status ================================================================================ TEST checkFortranLibraries from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:908) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:908) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90:2:0: fatal error: mpif.h: No such file or directory #include ^ compilation terminated. Source: program main #include call MPI_Allreduce() end Compile failed inside link Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' return end Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.compilers/confc.o: In function `asub_': /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' collect2: error: ld returned 1 exit status Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: Driving: gfortran -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -lstdc++ -ldl -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.4-2ubuntu1~14.04.4' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.4) Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-l6ax4d0t/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-shared-libgcc' '-mtune=generic' '-march=x86-64' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/opt/slurm/14.11.3/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:./:/opt/slurm/14.11.3/lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-l6ax4d0t/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-l6ax4d0t/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o -L/opt/slurm/14.11.3/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L. -L/opt/slurm/14.11.3/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -lstdc++ -ldl -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-l6ax4d0t/config.compilers/conftest compilers: Unknown arg /tmp/petsc-l6ax4d0t/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg /tmp/petsc-l6ax4d0t/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-l6ax4d0t/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs compilers: Checking arg --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.8 compilers: Unknown arg --program-suffix=-4.8 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.8 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.8 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-libmudflap compilers: Unknown arg --disable-libmudflap compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --disable-browser-plugin compilers: Unknown arg --disable-browser-plugin compilers: Checking arg --enable-java-awt=gtk compilers: Unknown arg --enable-java-awt=gtk compilers: Checking arg --enable-gtk-cairo compilers: Unknown arg --enable-gtk-cairo compilers: Checking arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre compilers: Unknown arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre compilers: Checking arg --enable-java-home compilers: Unknown arg --enable-java-home compilers: Checking arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 compilers: Unknown arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 compilers: Checking arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 compilers: Unknown arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 compilers: Checking arg --with-arch-directory=amd64 compilers: Unknown arg --with-arch-directory=amd64 compilers: Checking arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.4 compilers: Unknown arg 4.8.4 compilers: Checking arg (Ubuntu compilers: Unknown arg (Ubuntu compilers: Checking arg 4.8.4-2ubuntu1~14.04.4) compilers: Unknown arg 4.8.4-2ubuntu1~14.04.4) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/opt/slurm/14.11.3/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:./:/opt/slurm/14.11.3/lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/opt/slurm/14.11.3/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:./:/opt/slurm/14.11.3/lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-l6ax4d0t/config.compilers/conftest compilers: Unknown arg /tmp/petsc-l6ax4d0t/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o compilers: Checking arg -L/opt/slurm/14.11.3/lib/../lib compilers: Found library directory: -L/opt/slurm/14.11.3/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L. compilers: Found library directory: -L/home/fbrarda/petsc compilers: Checking arg -L/opt/slurm/14.11.3/lib compilers: Already in lflags so skipping: -L/opt/slurm/14.11.3/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. compilers: Checking arg /tmp/petsc-l6ax4d0t/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-l6ax4d0t/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-lstdc++', '-ldl', '-lgfortran', '-lm', '-Wl,-rpath,/opt/slurm/14.11.3/lib', '-L/opt/slurm/14.11.3/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/fbrarda/petsc', '-L/home/fbrarda/petsc', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:1332) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1332) Check that Fortran can link C++ libraries Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/cxxobj.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:1487) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1487) child config.compilers 4.362314 ================================================================================ TEST configureClosure from config.utilities.closure(/home/fbrarda/petsc/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.utilities.closure Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.closure/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.utilities.closure/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.utilities.closure/conftest.c:6:6: error: expected identifier or ‘(’ before ‘^’ token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.036905 ================================================================================ TEST checkFortranTypeSizes from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:56) TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.compilersFortran Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90:2.21: real*8 variable 1 Warning: Unused variable 'variable' declared at (1) Source: program main real*8 variable end ================================================================================ TEST checkFortranPreprocessor from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:73) TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end compilers: Fortran uses preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:96) TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O -DTesting /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortran90 from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:146) TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90:3.43: REAL(KIND=SELECTED_REAL_KIND(10)) d 1 Warning: Unused variable 'd' declared at (1) Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -lstdc++ -ldl Fortran compiler supports F90 ================================================================================ TEST checkFortran90FreeForm from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:162) TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ================================================================================ TEST checkFortran2003 from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:176) TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90: In function ‘main’: /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90:16:0: warning: ‘carray.dim[0].stride’ may be used uninitialized in this function [-Wmaybe-uninitialized] Type(C_Ptr),Dimension(:),Pointer :: CArray ^ /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90:21:0: warning: ‘carray.dim[0].lbound’ may be used uninitialized in this function [-Wmaybe-uninitialized] CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) ^ /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90:16:0: note: ‘carray.dim[0].lbound’ was declared here Type(C_Ptr),Dimension(:),Pointer :: CArray ^ /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90:21:0: warning: ‘carray.offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) ^ /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90:16:0: note: ‘carray.offset’ was declared here Type(C_Ptr),Dimension(:),Pointer :: CArray ^ Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ================================================================================ TEST checkFortran90Array from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:211) TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o /tmp/petsc-l6ax4d0t/config.compilersFortran/fooobj.o -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest stdout: arrays [0x7fffc5243a00 0x7fffc5243a00 0x7fffc5243a00] arrays [0x7fffc52439b0 0x7fffc5243960 0x7fffc52439b0] pointers do not match! [0x7f1350a25780 0x7fffc5243a00] [0x7f1350f4b700] ERROR while running executable: Could not execute "['/tmp/petsc-l6ax4d0t/config.compilersFortran/conftest']": arrays [0x7fffc5243a00 0x7fffc5243a00 0x7fffc5243a00] arrays [0x7fffc52439b0 0x7fffc5243960 0x7fffc52439b0] pointers do not match! [0x7f1350a25780 0x7fffc5243a00] [0x7f1350f4b700] compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortran90AssumedType from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:298) TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Running Executable WITHOUT threads to time it out Executing: gfortran -qversion ================================================================================ TEST checkFortranModuleInclude from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:303) TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest -I/tmp/petsc-l6ax4d0t/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o /tmp/petsc-l6ax4d0t/config.compilersFortran/configtest.o -lstdc++ -ldl compilers: Fortran module include flag -I found ================================================================================ TEST checkFortranModuleOutput from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:369) TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -module /tmp/petsc-l6ax4d0t/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option ‘-module’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -module:/tmp/petsc-l6ax4d0t/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option ‘-module:/tmp/petsc-l6ax4d0t/config.compilersFortran/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fmod=/tmp/petsc-l6ax4d0t/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option ‘-fmod=/tmp/petsc-l6ax4d0t/config.compilersFortran/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -J/tmp/petsc-l6ax4d0t/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found ================================================================================ TEST checkFortranTypeStar from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:135) TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ================================================================================ TEST checkFortranTypeInitialize from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:125) TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ================================================================================ TEST configureFortranFlush from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:116) TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ================================================================================ TEST checkDependencyGenerationFlag from config.compilersFortran(/home/fbrarda/petsc/config/BuildSystem/config/compilersFortran.py:414) TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O -MMD -MP /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end child config.compilersFortran 1.183328 ================================================================================ TEST checkStdC from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.headers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.headers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.headers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.headers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.headers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directorycompilation terminated.: ================================================================================ TEST checkRecursiveMacros from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.headers/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 1.913023 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/home/fbrarda/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.utilities.cacheDetails Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "64" child config.utilities.cacheDetails 0.204382 ================================================================================ TEST check_struct_sigaction from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:42) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.types Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:11:18: warning: unused variable ‘a’ [-Wunused-variable] struct sigaction a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:48) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:11:1: error: unknown type name ‘__int64’ __int64 a;; ^ /tmp/petsc-l6ax4d0t/config.types/conftest.c:11:9: warning: unused variable ‘a’ [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:54) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:11:8: warning: unused variable ‘a’ [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:64) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:11:8: warning: unused variable ‘a’ [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:11:7: warning: unused variable ‘a’ [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:59) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:11:9: warning: unused variable ‘a’ [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:70) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:11:7: warning: unused variable ‘a’ [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:74) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:81) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:92) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkConst from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:103) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:30:9: warning: ‘t’ is used uninitialized in this function [-Wuninitialized] *t++ = 0; ^ /tmp/petsc-l6ax4d0t/config.types/conftest.c:46:25: warning: ‘b’ is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ================================================================================ TEST checkSizeof from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkSizeof from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkVisibility from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:193) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ================================================================================ TEST checkMaxPathLen from config.types(/home/fbrarda/petsc/config/BuildSystem/config/types.py:215) TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.types /tmp/petsc-l6ax4d0t/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 1.967775 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/home/fbrarda/petsc/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.002007 ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ================================================================================ TEST checkMath from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_sin’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:6:40: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ^ /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_floor’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:10:42: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ^ /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_log10’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:14:42: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ^ /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_pow’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:18:40: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_sin': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:6: undefined reference to `sin' /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_floor': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:10: undefined reference to `floor' /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_log10': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:14: undefined reference to `log10' /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_pow': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:18: undefined reference to `pow' collect2: error: ld returned 1 exit status Checking for functions [sin floor log10 pow] in library ['m'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_sin’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:6:40: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ^ /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_floor’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:10:42: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ^ /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_log10’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:14:42: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ^ /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_pow’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:18:40: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" CheckMath: using math library ['libm.a'] ================================================================================ TEST checkMathErf from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_erf’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5:74: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_tgamma’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5:83: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathLgamma from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:301) TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" lgamma() found Defined "HAVE_LGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:314) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:322) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_log2’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5:81: warning: unused variable ‘y’ [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:331) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:347) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 1.479022 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/home/fbrarda/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status Checking for functions [ADIOI_BGL_Open] in library [''] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/home/fbrarda/petsc/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.218645 child config.atomics 0.000017 ================================================================================ TEST checkSysinfo from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.functions Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ /tmp/petsc-l6ax4d0t/config.functions/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.functions/conftest.c:13:30: warning: implicit declaration of function ‘sysinfo’ [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /tmp/petsc-l6ax4d0t/config.functions/conftest.c:6:5: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [getpagesize bzero strcasecmp getcwd _snprintf readlink dlerror _mkdir _access access fpresetsticky socket _lseek lseek sleep _pipe realpath fork stricmp dlopen clock rand dlsym usleep PXFGETARG _getcwd popen _sleep snprintf drand48 fpsetsticky _set_output_format gethostbyname gethostname getdomainname uname time dlclose getrusage sbreak memalign getwd] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.c:14:6: warning: conflicting types for built-in function ‘bzero’ char bzero(); ^ /tmp/petsc-l6ax4d0t/config.functions/conftest.c:15:6: warning: conflicting types for built-in function ‘strcasecmp’ char strcasecmp(); ^ /tmp/petsc-l6ax4d0t/config.functions/conftest.c:30:6: warning: conflicting types for built-in function ‘fork’ char fork(); ^ /tmp/petsc-l6ax4d0t/config.functions/conftest.c:41:6: warning: conflicting types for built-in function ‘snprintf’ char snprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); char bzero(); char strcasecmp(); char getcwd(); char _snprintf(); char readlink(); char dlerror(); char _mkdir(); char _access(); char access(); char fpresetsticky(); char socket(); char _lseek(); char lseek(); char sleep(); char _pipe(); char realpath(); char fork(); char stricmp(); char dlopen(); char clock(); char rand(); char dlsym(); char usleep(); char PXFGETARG(); char _getcwd(); char popen(); char _sleep(); char snprintf(); char drand48(); char fpsetsticky(); char _set_output_format(); char gethostbyname(); char gethostname(); char getdomainname(); char uname(); char time(); char dlclose(); char getrusage(); char sbreak(); char memalign(); char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:311: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-l6ax4d0t/config.functions/conftest.c:89: undefined reference to `_snprintf' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:107: undefined reference to `_mkdir' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:113: undefined reference to `_access' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:125: undefined reference to `fpresetsticky' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:137: undefined reference to `_lseek' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:155: undefined reference to `_pipe' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:173: undefined reference to `stricmp' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:209: undefined reference to `PXFGETARG' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:215: undefined reference to `_getcwd' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:227: undefined reference to `_sleep' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:245: undefined reference to `fpsetsticky' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:251: undefined reference to `_set_output_format' /tmp/petsc-l6ax4d0t/config.functions/conftest.c:299: undefined reference to `sbreak' collect2: error: ld returned 1 exit status Checking for functions [getpagesize bzero strcasecmp readlink dlerror socket realpath fork dlopen clock rand] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.c:14:6: warning: conflicting types for built-in function ‘bzero’ char bzero(); ^ /tmp/petsc-l6ax4d0t/config.functions/conftest.c:15:6: warning: conflicting types for built-in function ‘strcasecmp’ char strcasecmp(); ^ /tmp/petsc-l6ax4d0t/config.functions/conftest.c:20:6: warning: conflicting types for built-in function ‘fork’ char fork(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); char bzero(); char strcasecmp(); char readlink(); char dlerror(); char socket(); char realpath(); char fork(); char dlopen(); char clock(); char rand(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_RAND" to "1" Checking for functions [dlsym usleep popen drand48 gethostbyname gethostname getdomainname uname time dlclose getrusage memalign] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlsym(); char usleep(); char popen(); char drand48(); char gethostbyname(); char gethostname(); char getdomainname(); char uname(); char time(); char dlclose(); char getrusage(); char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_DLSYM" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_MEMALIGN" to "1" Checking for functions [getcwd] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_snprintf] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status Checking for functions [_mkdir] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `_mkdir' collect2: error: ld returned 1 exit status Checking for functions [_access] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `_access' collect2: error: ld returned 1 exit status Checking for functions [access] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [fpresetsticky] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `fpresetsticky' collect2: error: ld returned 1 exit status Checking for functions [_lseek] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `_lseek' collect2: error: ld returned 1 exit status Checking for functions [lseek] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [sleep] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_pipe] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `_pipe' collect2: error: ld returned 1 exit status Checking for functions [stricmp] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `stricmp' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [_getcwd] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Checking for functions [_sleep] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `_sleep' collect2: error: ld returned 1 exit status Checking for functions [snprintf] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘snprintf’ char snprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [fpsetsticky] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `fpsetsticky' collect2: error: ld returned 1 exit status Checking for functions [_set_output_format] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status Checking for functions [sbreak] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: undefined reference to `sbreak' collect2: error: ld returned 1 exit status Checking for functions [getwd] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /tmp/petsc-l6ax4d0t/config.functions/conftest.o: In function `main': /tmp/petsc-l6ax4d0t/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" ================================================================================ TEST checkMmap from config.functions(/home/fbrarda/petsc/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.functions/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 3.413177 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/home/fbrarda/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.002141 ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/home/fbrarda/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.129199 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/home/fbrarda/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.191080 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/home/fbrarda/petsc/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.utilities.missing Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c:6:9: warning: unused variable ‘foo’ [-Wunused-variable] u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/home/fbrarda/petsc/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/home/fbrarda/petsc/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/home/fbrarda/petsc/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -lstdc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/home/fbrarda/petsc/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -std=gnu++14 /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 1.633484 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/home/fbrarda/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directorycompilation terminated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directorycompilation terminated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directorycompilation terminated.: child config.utilities.FPTrap 0.049611 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/home/fbrarda/petsc/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real All intermediate test results are stored in /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/home/fbrarda/petsc/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_logq’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5:43: warning: ‘f’ is used uninitialized in this function [-Wuninitialized] static void _check_logq() { __float128 f; logq(f);; } ^ /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5:40: note: ‘f’ was declared here static void _check_logq() { __float128 f; logq(f);; } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" C compiler with quadmath library Checking Fortran works with quadmath library Checking for functions [ ] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.libraries -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.F90 Successful compile: Source: program main real*16 s,w; w = 2.0 ;s = cos(w) end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Fortran works with quadmath library Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c: In function ‘_check_logq’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5:43: warning: ‘f’ is used uninitialized in this function [-Wuninitialized] static void _check_logq() { __float128 f; logq(f);; } ^ /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5:40: note: ‘f’ was declared here static void _check_logq() { __float128 f; logq(f);; } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Adding ['quadmath'] to LIBS Defined "HAVE_REAL___FLOAT128" to "1" Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 0.756032 ================================================================================ TEST configureMkdir from config.programs(/home/fbrarda/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/sbin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /sbin/mkdir...not found Checking for program /bin/mkdir...found Running Executable WITHOUT threads to time it out Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/home/fbrarda/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/sbin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/sbin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.programs Running Executable WITHOUT threads to time it out Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /usr/local/sbin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/sbin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/home/fbrarda/petsc/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /usr/local/sbin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/sbin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /sbin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/local/sbin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/sbin/sed...not found Checking for program /usr/bin/sed...not found Checking for program /sbin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Running Executable WITHOUT threads to time it out Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-l6ax4d0t/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /usr/local/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/sbin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /sbin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/local/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/sbin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /sbin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/local/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/sbin/grep...not found Checking for program /usr/bin/grep...not found Checking for program /sbin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /usr/local/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/sbin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /sbin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/local/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/sbin/diff...not found Checking for program /usr/bin/diff...found Running Executable WITHOUT threads to time it out Executing: "/usr/bin/diff" -w "/tmp/petsc-l6ax4d0t/config.programs/diff1" "/tmp/petsc-l6ax4d0t/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Defined make macro "PYTHON" to "/usr/bin/python3" Checking for program /usr/local/sbin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/sbin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 2.978870 ================================================================================ TEST consistencyChecks from config.packages.make(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.make(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureMake from config.packages.make(/home/fbrarda/petsc/config/BuildSystem/config/packages/make.py:96) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Running Executable WITHOUT threads to time it out Executing: gmake --version GNUMake check failed: Could not execute "['gmake --version']": /bin/sh: 1: gmake: not found Running Executable WITHOUT threads to time it out Executing: make --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for x86_64-pc-linux-gnu Checking for program /usr/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/sbin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /usr/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/sbin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" =============================================================================== ***** WARNING: You have a version of GNU make older than 4.0. It will work, but may not support all the parallel testing options. You can install the latest GNU make with your package manager, such as brew or macports, or use the --download-make option to get the latest GNU make ***** =============================================================================== ================================================================================ TEST setupGNUMake from config.packages.make(/home/fbrarda/petsc/config/BuildSystem/config/packages/make.py:150) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST configureMakeNP from config.packages.make(/home/fbrarda/petsc/config/BuildSystem/config/packages/make.py:197) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 24 cores: using make_np = 18 Defined make macro "MAKE_NP" to "18" Defined make macro "MAKE_TEST_NP" to "12" Defined make macro "MAKE_LOAD" to "36.0" Defined make macro "NPMAX" to "24" child config.packages.make 0.024979 ================================================================================ TEST consistencyChecks from config.packages.thrust(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.thrust(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.002766 ================================================================================ TEST consistencyChecks from config.packages.cuda(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.002328 ================================================================================ TEST consistencyChecks from config.packages.OpenMPI(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.002373 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST consistencyChecks from config.packages.MPICH(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.MPICH(/home/fbrarda/petsc/config/BuildSystem/config/package.py:870) TESTING: checkDependencies from config.packages.MPICH(config/BuildSystem/config/package.py:870) ================================================================================ TEST configureLibrary from config.packages.MPICH(/home/fbrarda/petsc/config/BuildSystem/config/package.py:895) TESTING: configureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional MPICH Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Looking for MPICH at git.mpich, hg.mpich or a directory starting with ['mpich'] Could not locate an existing copy of MPICH: [] Downloading MPICH =============================================================================== Trying to download https://www.mpich.org/static/downloads/3.3.2/mpich-3.3.2.tar.gz for MPICH =============================================================================== Downloading https://www.mpich.org/static/downloads/3.3.2/mpich-3.3.2.tar.gz to /home/fbrarda/petsc/arch-opt/externalpackages/_d_mpich-3.3.2.tar.gz Extracting /home/fbrarda/petsc/arch-opt/externalpackages/_d_mpich-3.3.2.tar.gz Running Executable WITHOUT threads to time it out Executing: cd /home/fbrarda/petsc/arch-opt/externalpackages; chmod -R a+r mpich-3.3.2;find mpich-3.3.2 -type d -name "*" -exec chmod a+rx {} \; Looking for MPICH at git.mpich, hg.mpich or a directory starting with ['mpich'] Found a copy of MPICH in mpich-3.3.2 All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.packages.MPICH Running Executable WITHOUT threads to time it out Executing: gfortran -v Running Executable WITHOUT threads to time it out Executing: gfortran -V Running Executable WITHOUT threads to time it out Executing: gfortran --version stdout: GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Running Executable WITHOUT threads to time it out Executing: gfortran -V Running Executable WITHOUT threads to time it out Executing: gfortran --version stdout: GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Running Executable WITHOUT threads to time it out Executing: gfortran -V Running Executable WITHOUT threads to time it out Executing: gfortran --version stdout: GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Removing configure arguments ['--disable-f90', '--enable-f90'] Removing configure arguments ['F90="gfortran"', 'F90FLAGS="-fPIC -ffree-line-length-0 -g -O"'] MPICH was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Running configure on MPICH; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./configure --prefix=/home/fbrarda/petsc/arch-opt MAKE=/usr/bin/make --libdir=/home/fbrarda/petsc/arch-opt/lib CC="gcc" CFLAGS="-fPIC -fstack-protector -g -O" AR="/usr/bin/ar" ARFLAGS="cr" CXX="g++" CXXFLAGS="-fstack-protector -g -O -fPIC -std=gnu++14" FFLAGS="-fPIC -ffree-line-length-0 -g -O" FC="gfortran" F77="gfortran" FCFLAGS="-fPIC -ffree-line-length-0 -g -O" --enable-shared --with-pm=hydra --with-device=ch3:nemesis --enable-g=meminit stdout: Configuring MPICH version 3.3.2 with '--prefix=/home/fbrarda/petsc/arch-opt' 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' Running on system: Linux srvulx13 3.13.0-44-generic #73-Ubuntu SMP Tue Dec 16 00:22:43 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate Parsing Arguments for OFI Netmod checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no configure: RUNNING PREREQ FOR ch3:nemesis configure: ===== configuring src/mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' --disable-versioning --enable-embedded 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14 ' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O ' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O ' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes configure: Timer type selected is CLOCK_GETTIME checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... 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(cached) no checking for posix_memalign... yes checking for aligned_alloc... yes checking whether aligned_alloc needs a declaration... no checking for backtrace_symbols... yes checking whether backtrace_create_state is declared... no checking whether backtrace_print is declared... no checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking for __attribute__((fallthrough))... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' --disable-versioning --enable-embedded --with-atomic-primitives=auto_allow_emulation 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14 ' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O ' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O ' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with src/openpa configure ===== checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc configure: hwloc srcdir: /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc checking for hwloc version... 2.0.3rc2-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... src/hwloc/ checking for hwloc symbol prefix... hwloc_ checking for gcc option to accept ISO C99... none needed checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking whether to enable symbol visibility... no (disabled) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strcasecmp... yes checking whether strcasecmp is declared... yes checking whether function strcasecmp has a complete prototype... yes checking for strncasecmp... yes checking whether strncasecmp is declared... yes checking whether function strncasecmp has a complete prototype... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for PROCESSOR_NUMBER... no checking for main in -lgdi32... no checking for PostQuitMessage in -luser32... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking 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checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for XOpenDisplay in -lX11... yes checking for X11/Xutil.h... yes checking X11/keysym.h usability... yes checking X11/keysym.h presence... yes checking for X11/keysym.h... yes checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... yes checking libxml/parser.h usability... yes checking libxml/parser.h presence... yes checking for libxml/parser.h... yes checking for xmlNewDoc... yes checking for final LIBXML2 support... yes checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic xml_nolibxml linux linuxio xml_libxml x86 checking components to build as plugins... sourcing /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/opt/slurm/14.11.3/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L. -L/opt/slurm/14.11.3/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lgfortran -lm -lquadmath checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether gcc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... yes checking for linker for Fortran main program... Use Fortran to link programs checking for Fortran 77 name mangling... lower uscore checking for libraries to link Fortran main with C stdio routines... none checking whether Fortran init will work with C... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g -O ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g -O ) is a cross-compiler... no checking whether Fortran 90 compiler works with Fortran 77 compiler... yes checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) checking whether Fortran 77 accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether gfortran allows mismatched arguments... yes checking for Fortran 2008 support... no checking for shared library (esp. rpath) characteristics of FC... done (results in src/env/fc_shlib.conf) checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g -O ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g -O ) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether Fortran 90 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none checking whether TRUE has been defined... no checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 5 . 3 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/bin/perl checking for ar... /usr/bin/ar checking for ranlib... ranlib checking for killall... killall checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 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True is 1 and False is 0 checking for Fortran 90 integer kind for 8-byte integers... 8 checking for Fortran 90 integer kind for 4-byte integers... 4 checking if real*8 is supported in Fortran 90... yes checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 32 checking whether C compiler accepts option -Werror... yes checking whether C compiler option -Werror works with an invalid prototype program... yes checking whether routines compiled with -Werror can be linked with ones compiled without -Werror... yes checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... 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(cached) yes checking whether we can use struct ifconf... yes checking whether we can use struct ifreq... yes checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no configure: ===== configuring src/mpi/romio ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O -O2' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for grep that handles long lines and -e... /bin/grep checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes Configuring with args dummy mt checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... LINUX ROMIO home directory is /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... 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(cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long... yes checking size of long long... 8 checking for memalign... yes checking Fortran external names Fortran externals have a trailing underscore and are lowercase checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for off_t... yes checking how to run the C preprocessor... gcc -E checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... 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(cached) 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking sys/aio.h usability... no checking sys/aio.h presence... no checking for sys/aio.h... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for struct aiocb.aio_fildes... yes checking for struct aiocb.aio_whence... no checking for struct aiocb.aio_handle... no checking for struct aiocb.aio_reqprio... yes checking for struct aiocb.aio_sigevent... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking for statfs... yes checking whether struct statfs properly defined... yes checking for f_type member of statfs structure... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for blksize_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking whether pwrite is declared... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... no checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for usleep... yes checking whether usleep needs a declaration... no setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to gfortran setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpifort setting CFLAGS to -fPIC -fstack-protector -g -O -O2 -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O -O2' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking whether /usr/bin/make supports nested variables... (cached) yes checking for perl... /usr/bin/perl checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 8 checking for size_t... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for variable argument list macro functionality... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes configure: ===== configuring mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' --disable-versioning --enable-embedded 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O -O2 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src -D_REENTRANT -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio/include' 'MPLLIBNAME=mpl' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes configure: Timer type selected is CLOCK_GETTIME checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no configure: POSIX will be used for thread package. checking for thread local storage... _Thread_local checking for pthread_mutex_init... yes checking for pthread_mutexattr_setpshared... yes configure: POSIX will be used for interprocess mutex package. checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... no checking for getpid... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking for usleep... (cached) yes checking whether usleep needs a declaration... (cached) no checking for posix_memalign... yes checking for aligned_alloc... yes checking whether aligned_alloc needs a declaration... no checking for backtrace_symbols... yes checking whether backtrace_create_state is declared... no checking whether backtrace_print is declared... no checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking for __attribute__((fallthrough))... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with mpl configure ===== configure: sourcing mpl/localdefs checking for doxygen... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking for strings.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking for library containing hstrerror... none required checking for gettimeofday... yes checking for time... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strsignal... yes checking for stat... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for killpg... yes checking for hstrerror... yes checking whether hstrerror needs a declaration... no checking whether gettimeofday needs a declaration... no checking whether getpgid needs a declaration... no checking whether killpg needs a declaration... no checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc configure: hwloc srcdir: /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc checking for hwloc version... 2.0.3rc2-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... tools/topo/hwloc/hwloc/ checking for hwloc symbol prefix... hwloc_ checking for gcc option to accept ISO C99... none needed checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... (cached) 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strcasecmp... yes checking whether strcasecmp is declared... yes checking whether function strcasecmp has a complete prototype... yes checking for strncasecmp... yes checking whether strncasecmp is declared... yes checking whether function strncasecmp has a complete prototype... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for PROCESSOR_NUMBER... no checking for main in -lgdi32... no checking for PostQuitMessage in -luser32... no checking for windows.h... (cached) no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking whether modff is declared... yes checking for modff in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking whether strtoull is declared... yes checking for ssize_t... yes checking whether snprintf is declared... yes checking whether _strdup is declared... no checking whether _putenv is declared... no checking whether getprogname is declared... no checking whether getexecname is declared... no checking whether GetModuleFileName is declared... no checking for program_invocation_name... yes checking for __progname... yes checking for pthread_t... yes checking whether sched_getcpu is declared... yes checking whether sched_setaffinity is declared... yes checking whether function sched_setaffinity has a complete prototype... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working syscall with 6 parameters... yes checking for lib... no checking for bash... /bin/bash checking for ffs... yes checking whether ffs is declared... yes checking whether function ffs has a complete prototype... yes checking for ffsl... yes checking whether ffsl is declared... yes checking whether function ffsl has a complete prototype... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking libudev.h usability... no checking libudev.h presence... no checking for libudev.h... no checking for PCIACCESS... no checking pciaccess.h usability... no checking pciaccess.h presence... no checking for pciaccess.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for XOpenDisplay in -lX11... yes checking for X11/Xutil.h... yes checking X11/keysym.h usability... yes checking X11/keysym.h presence... yes checking for X11/keysym.h... yes checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... yes checking libxml/parser.h usability... yes checking libxml/parser.h presence... yes checking for libxml/parser.h... yes checking for xmlNewDoc... yes checking for final LIBXML2 support... yes checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic xml_nolibxml linux linuxio xml_libxml x86 checking components to build as plugins... checking available processor topology libraries... hwloc checking slurm/slurm.h usability... no checking slurm/slurm.h presence... no checking for slurm/slurm.h... no checking for slurm_hostlist_create in -lslurm... yes checking whether POSIX compliant regcomp()/regexec()... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... no checking libcr.h presence... no checking for libcr.h... no checking for cr_init in -lcr... no checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... meminit checking error checking... yes checking warnings... no checking profiling... yes checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/hwloc/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes checking for size of MPI_Status... 20 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... 16 checking the minimum alignment of Fortran common block of 5 integers... 16, too small! reset to 32 configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/hwloc/Makefile config.status: creating src/hwloc/include/Makefile config.status: creating src/hwloc/hwloc/Makefile config.status: creating src/binding/fortran/use_mpi/mpif90model.h config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/mpir_ext.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/fortran/mpif_h/mpif.h config.status: creating src/binding/fortran/mpif_h/setbotf.f config.status: creating src/binding/fortran/mpif_h/setbot.c config.status: creating src/binding/fortran/use_mpi/mpi_sizeofs.f90 config.status: creating src/binding/fortran/use_mpi/mpi_base.f90 config.status: creating src/binding/fortran/use_mpi/mpi_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_f08_compile_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_c_interface_types.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.bash config.status: creating src/env/mpifort.sh config.status: creating src/env/mpifort.bash config.status: creating src/env/parkill config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/userguide/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: creating src/hwloc/include/private/autogen/config.h config.status: creating src/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands === configuring in test/mpi (/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking the archiver (/usr/bin/ar) interface... ar checking for grep that handles long lines and -e... /bin/grep checking for fgrep... /bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of void *... 8 checking for library containing socket... none required checking for library containing gethostbyname... none required checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/opt/slurm/14.11.3/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L. -L/opt/slurm/14.11.3/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lpthread -lgfortran -lm -lquadmath checking for Fortran 77 name mangling... lower uscore checking whether gfortran allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... yes checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g -O ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g -O ) is a cross-compiler... no checking for Fortran flag needed to accept free-form source... none checking whether Fortran 90 supports Cray-style pointer... yes checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... (cached) 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating attr/testlist config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating coll/testlist config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating datatype/testlist config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating pt2pt/testlist config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating rma/testlist config.status: creating spawn/Makefile config.status: creating spawn/testlist config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating io/testlist config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f77/io/testlist config.status: creating f77/profile/Makefile config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/io/testlist config.status: creating f90/misc/Makefile config.status: creating f90/profile/Makefile config.status: creating f08/Makefile config.status: creating f08/attr/Makefile config.status: creating f08/datatype/Makefile config.status: creating f08/util/Makefile config.status: creating f08/coll/Makefile config.status: creating f08/comm/Makefile config.status: creating f08/pt2pt/Makefile config.status: creating f08/rma/Makefile config.status: creating f08/subarray/Makefile config.status: creating f08/topo/Makefile config.status: creating f08/io/Makefile config.status: creating f08/io/testlist config.status: creating f08/init/Makefile config.status: creating f08/info/Makefile config.status: creating f08/spawn/Makefile config.status: creating f08/spawn/testlist config.status: creating f08/timer/Makefile config.status: creating f08/ext/Makefile config.status: creating f08/misc/Makefile config.status: creating f08/profile/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/attr/testlist config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/datatype/testlist config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating cxx/spawn/testlist config.status: creating cxx/topo/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/comm/testlist config.status: creating threads/init/Makefile config.status: creating threads/mpi_t/Makefile config.status: creating threads/spawn/Makefile config.status: creating threads/rma/Makefile config.status: creating threads/coll/Makefile config.status: creating threads/coll/testlist config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/spawn/testlist config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/io/Makefile config.status: creating errors/f77/io/addsize.h config.status: creating errors/f77/io/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/io/Makefile config.status: creating errors/f08/Makefile config.status: creating errors/f08/io/Makefile config.status: creating ckpoint/Makefile config.status: creating ft/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating cxx/topo/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating f08/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating errors/f77/testlist config.status: creating errors/f90/testlist config.status: creating impls/testlist config.status: creating f77/rma/testlist config.status: creating f90/rma/testlist config.status: creating f08/rma/testlist config.status: creating impls/Makefile config.status: creating impls/hydra/Makefile config.status: creating impls/hydra/proc_binding.sh config.status: creating impls/mpich/Makefile config.status: creating impls/mpich/testlist config.status: creating impls/mpich/mpi_t/Makefile config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands === configuring in dtpools (/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' 'master_top_builddir=/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' 'master_top_srcdir=/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' 'FROM_MPICH=yes' 'MPICH_THREAD_LEVEL=MPI_THREAD_MULTIPLE' 'MPICH_ENABLE_F77=yes' 'MPICH_ENABLE_FC=yes' 'MPICH_ENABLE_CXX=yes' 'MPI_NO_SPAWN=' 'MPI_NO_RMA=' 'WRAPPER_CFLAGS=-fPIC -fstack-protector -g -O' 'WRAPPER_CPPFLAGS=' 'WRAPPER_LDFLAGS=' 'WRAPPER_LIBS=-lm -lxml2 -lbacktrace -lpthread -lrt ' 'WRAPPER_FFLAGS=-fPIC -ffree-line-length-0 -g -O' 'WRAPPER_FCFLAGS=-fPIC -ffree-line-length-0 -g -O' 'WRAPPER_CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src -D_REENTRANT -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio/include' 'MPI_SIZEOF_AINT=8' 'MPI_SIZEOF_OFFSET=8' --cache-file=/dev/null --srcdir=. checking for gawk... gawk checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether /usr/bin/make sets $(MAKE)... yes checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether /usr/bin/make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdint.h... (cached) yes checking for sys/types.h... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for memset... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating dtpoolsconf.h config.status: executing depfiles commands config.status: executing libtool commands Configuration completed. =============================================================================== Running make on MPICH; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make clean stdout: Making clean in src/mpl make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' rm -f strsep test -z "" || rm -f rm -rf .libs _libs rm -rf src/bt/.libs src/bt/_libs rm -rf src/dbg/.libs src/dbg/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/mem/.libs src/mem/_libs rm -rf src/msg/.libs src/msg/_libs rm -rf src/shm/.libs src/shm/_libs rm -rf src/sock/.libs src/sock/_libs rm -rf src/str/.libs src/str/_libs rm -rf src/thread/.libs src/thread/_libs rm -rf src/timer/.libs src/timer/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/bt/*.o rm -f src/bt/*.lo rm -f src/dbg/*.o rm -f src/dbg/*.lo rm -f src/env/*.o rm -f src/env/*.lo rm -f src/mem/*.o rm -f src/mem/*.lo rm -f src/msg/*.o rm -f src/msg/*.lo rm -f src/shm/*.o rm -f src/shm/*.lo rm -f src/sock/*.o rm -f src/sock/*.lo rm -f src/str/*.o rm -f src/str/*.lo rm -f src/thread/*.o rm -f src/thread/*.lo rm -f src/timer/*.o rm -f src/timer/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' Making clean in src/openpa make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making clean in src make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' rm -rf .libs _libs test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making clean in test make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o test -z "sanity.log test_primitives.log test_barriers.log test_queue.log" || rm -f sanity.log test_primitives.log test_barriers.log test_queue.log test -z "sanity.trs test_primitives.trs test_barriers.trs test_queue.trs" || rm -f sanity.trs test_primitives.trs test_barriers.trs test_queue.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making clean in src/hwloc make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making clean in include make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making clean in hwloc make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making clean in src/mpi/romio make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' test -z "" || rm -f rm -rf .libs _libs rm -rf adio/ad_gpfs/.libs adio/ad_gpfs/_libs rm -rf adio/ad_gpfs/bg/.libs adio/ad_gpfs/bg/_libs rm -rf adio/ad_gpfs/pe/.libs adio/ad_gpfs/pe/_libs rm -rf adio/ad_ime/.libs adio/ad_ime/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/.libs mpi-io/glue/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la " || rm -f libromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_gpfs/*.o rm -f adio/ad_gpfs/*.lo rm -f adio/ad_gpfs/bg/*.o rm -f adio/ad_gpfs/bg/*.lo rm -f adio/ad_gpfs/pe/*.o rm -f adio/ad_gpfs/pe/*.lo rm -f adio/ad_ime/*.o rm -f adio/ad_ime/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/*.o rm -f mpi-io/glue/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making clean in src/pm/hydra make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making clean in mpl make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' rm -f strsep test -z "" || rm -f rm -rf .libs _libs rm -rf src/bt/.libs src/bt/_libs rm -rf src/dbg/.libs src/dbg/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/mem/.libs src/mem/_libs rm -rf src/msg/.libs src/msg/_libs rm -rf src/shm/.libs src/shm/_libs rm -rf src/sock/.libs src/sock/_libs rm -rf src/str/.libs src/str/_libs rm -rf src/thread/.libs src/thread/_libs rm -rf src/timer/.libs src/timer/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/bt/*.o rm -f src/bt/*.lo rm -f src/dbg/*.o rm -f src/dbg/*.lo rm -f src/env/*.o rm -f src/env/*.lo rm -f src/mem/*.o rm -f src/mem/*.lo rm -f src/msg/*.o rm -f src/msg/*.lo rm -f src/shm/*.o rm -f src/shm/*.lo rm -f src/sock/*.o rm -f src/sock/*.lo rm -f src/str/*.o rm -f src/str/*.lo rm -f src/thread/*.o rm -f src/thread/*.lo rm -f src/timer/*.o rm -f src/timer/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making clean in tools/topo/hwloc/hwloc make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in include make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making clean in hwloc make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs rm -rf pm/pmiserv/.libs pm/pmiserv/_libs rm -rf tools/bootstrap/external/.libs tools/bootstrap/external/_libs rm -rf tools/bootstrap/persist/.libs tools/bootstrap/persist/_libs rm -rf tools/bootstrap/src/.libs tools/bootstrap/src/_libs rm -rf tools/bootstrap/utils/.libs tools/bootstrap/utils/_libs rm -rf tools/ckpoint/.libs tools/ckpoint/_libs rm -rf tools/ckpoint/blcr/.libs tools/ckpoint/blcr/_libs rm -rf tools/debugger/.libs tools/debugger/_libs rm -rf tools/demux/.libs tools/demux/_libs rm -rf tools/topo/.libs tools/topo/_libs rm -rf tools/topo/hwloc/.libs tools/topo/hwloc/_libs rm -rf ui/utils/.libs ui/utils/_libs rm -rf utils/alloc/.libs utils/alloc/_libs rm -rf utils/args/.libs utils/args/_libs rm -rf utils/dbg/.libs utils/dbg/_libs rm -rf utils/env/.libs utils/env/_libs rm -rf utils/launch/.libs utils/launch/_libs rm -rf utils/others/.libs utils/others/_libs rm -rf utils/signals/.libs utils/signals/_libs rm -rf utils/sock/.libs utils/sock/_libs rm -rf utils/string/.libs utils/string/_libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f pm/pmiserv/*.o rm -f pm/pmiserv/*.lo rm -f tools/bootstrap/external/*.o rm -f tools/bootstrap/external/*.lo rm -f tools/bootstrap/persist/*.o rm -f tools/bootstrap/persist/*.lo rm -f tools/bootstrap/src/*.o rm -f tools/bootstrap/src/*.lo rm -f tools/bootstrap/utils/*.o rm -f tools/bootstrap/utils/*.lo rm -f tools/ckpoint/*.o rm -f tools/ckpoint/*.lo rm -f tools/ckpoint/blcr/*.o rm -f tools/ckpoint/blcr/*.lo rm -f tools/debugger/*.o rm -f tools/debugger/*.lo rm -f tools/demux/*.o rm -f tools/demux/*.lo rm -f tools/nameserver/*.o rm -f tools/topo/*.o rm -f tools/topo/*.lo rm -f tools/topo/hwloc/*.o rm -f tools/topo/hwloc/*.lo rm -f ui/mpich/*.o rm -f ui/utils/*.o rm -f ui/utils/*.lo rm -f utils/alloc/*.o rm -f utils/alloc/*.lo rm -f utils/args/*.o rm -f utils/args/*.lo rm -f utils/dbg/*.o rm -f utils/dbg/*.lo rm -f utils/env/*.o rm -f utils/env/*.lo rm -f utils/launch/*.o rm -f utils/launch/*.lo rm -f utils/others/*.o rm -f utils/others/*.lo rm -f utils/signals/*.o rm -f utils/signals/*.lo rm -f utils/sock/*.o rm -f utils/sock/*.lo rm -f utils/string/*.o rm -f utils/string/*.lo rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making clean in . make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' rm -f src/env/mpichversion src/env/mpivars test -z "src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod " || rm -f src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod test -z " lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la" || rm -f lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/fortran/mpif_h/.libs src/binding/fortran/mpif_h/_libs rm -rf src/binding/fortran/use_mpi/.libs src/binding/fortran/use_mpi/_libs rm -rf src/binding/fortran/use_mpi_f08/.libs src/binding/fortran/use_mpi_f08/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_c/.libs src/binding/fortran/use_mpi_f08/wrappers_c/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/.libs src/binding/fortran/use_mpi_f08/wrappers_f/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/profiling/.libs src/binding/fortran/use_mpi_f08/wrappers_f/profiling/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf src/mpi/coll/algorithms/recexchalgo/.libs src/mpi/coll/algorithms/recexchalgo/_libs rm -rf src/mpi/coll/algorithms/stubalgo/.libs src/mpi/coll/algorithms/stubalgo/_libs rm -rf src/mpi/coll/algorithms/treealgo/.libs src/mpi/coll/algorithms/treealgo/_libs rm -rf src/mpi/coll/allgather/.libs src/mpi/coll/allgather/_libs rm -rf src/mpi/coll/allgatherv/.libs src/mpi/coll/allgatherv/_libs rm -rf src/mpi/coll/allreduce/.libs src/mpi/coll/allreduce/_libs rm -rf src/mpi/coll/allreduce_group/.libs src/mpi/coll/allreduce_group/_libs rm -rf src/mpi/coll/alltoall/.libs src/mpi/coll/alltoall/_libs rm -rf src/mpi/coll/alltoallv/.libs src/mpi/coll/alltoallv/_libs rm -rf src/mpi/coll/alltoallw/.libs src/mpi/coll/alltoallw/_libs rm -rf src/mpi/coll/barrier/.libs src/mpi/coll/barrier/_libs rm -rf src/mpi/coll/bcast/.libs src/mpi/coll/bcast/_libs rm -rf src/mpi/coll/exscan/.libs src/mpi/coll/exscan/_libs rm -rf src/mpi/coll/gather/.libs src/mpi/coll/gather/_libs rm -rf src/mpi/coll/gatherv/.libs src/mpi/coll/gatherv/_libs rm -rf src/mpi/coll/iallgather/.libs src/mpi/coll/iallgather/_libs rm -rf src/mpi/coll/iallgatherv/.libs src/mpi/coll/iallgatherv/_libs rm -rf src/mpi/coll/iallreduce/.libs src/mpi/coll/iallreduce/_libs rm -rf src/mpi/coll/ialltoall/.libs src/mpi/coll/ialltoall/_libs rm -rf src/mpi/coll/ialltoallv/.libs src/mpi/coll/ialltoallv/_libs rm -rf src/mpi/coll/ialltoallw/.libs src/mpi/coll/ialltoallw/_libs rm -rf src/mpi/coll/ibarrier/.libs src/mpi/coll/ibarrier/_libs rm -rf src/mpi/coll/ibcast/.libs src/mpi/coll/ibcast/_libs rm -rf src/mpi/coll/iexscan/.libs src/mpi/coll/iexscan/_libs rm -rf src/mpi/coll/igather/.libs src/mpi/coll/igather/_libs rm -rf src/mpi/coll/igatherv/.libs src/mpi/coll/igatherv/_libs rm -rf src/mpi/coll/ineighbor_allgather/.libs src/mpi/coll/ineighbor_allgather/_libs rm -rf src/mpi/coll/ineighbor_allgatherv/.libs src/mpi/coll/ineighbor_allgatherv/_libs rm -rf src/mpi/coll/ineighbor_alltoall/.libs src/mpi/coll/ineighbor_alltoall/_libs rm -rf src/mpi/coll/ineighbor_alltoallv/.libs src/mpi/coll/ineighbor_alltoallv/_libs rm -rf src/mpi/coll/ineighbor_alltoallw/.libs src/mpi/coll/ineighbor_alltoallw/_libs rm -rf src/mpi/coll/ireduce/.libs src/mpi/coll/ireduce/_libs rm -rf src/mpi/coll/ireduce_scatter/.libs src/mpi/coll/ireduce_scatter/_libs rm -rf src/mpi/coll/ireduce_scatter_block/.libs src/mpi/coll/ireduce_scatter_block/_libs rm -rf src/mpi/coll/iscan/.libs src/mpi/coll/iscan/_libs rm -rf src/mpi/coll/iscatter/.libs src/mpi/coll/iscatter/_libs rm -rf src/mpi/coll/iscatterv/.libs src/mpi/coll/iscatterv/_libs rm -rf src/mpi/coll/neighbor_allgather/.libs src/mpi/coll/neighbor_allgather/_libs rm -rf src/mpi/coll/neighbor_allgatherv/.libs src/mpi/coll/neighbor_allgatherv/_libs rm -rf src/mpi/coll/neighbor_alltoall/.libs src/mpi/coll/neighbor_alltoall/_libs rm -rf src/mpi/coll/neighbor_alltoallv/.libs src/mpi/coll/neighbor_alltoallv/_libs rm -rf src/mpi/coll/neighbor_alltoallw/.libs src/mpi/coll/neighbor_alltoallw/_libs rm -rf src/mpi/coll/op/.libs src/mpi/coll/op/_libs rm -rf src/mpi/coll/reduce/.libs src/mpi/coll/reduce/_libs rm -rf src/mpi/coll/reduce_local/.libs src/mpi/coll/reduce_local/_libs rm -rf src/mpi/coll/reduce_scatter/.libs src/mpi/coll/reduce_scatter/_libs rm -rf src/mpi/coll/reduce_scatter_block/.libs src/mpi/coll/reduce_scatter_block/_libs rm -rf src/mpi/coll/scan/.libs src/mpi/coll/scan/_libs rm -rf src/mpi/coll/scatter/.libs src/mpi/coll/scatter/_libs rm -rf src/mpi/coll/scatterv/.libs src/mpi/coll/scatterv/_libs rm -rf src/mpi/coll/src/.libs src/mpi/coll/src/_libs rm -rf src/mpi/coll/transports/gentran/.libs src/mpi/coll/transports/gentran/_libs rm -rf src/mpi/coll/transports/stubtran/.libs src/mpi/coll/transports/stubtran/_libs rm -rf src/mpi/comm/.libs src/mpi/comm/_libs rm -rf src/mpi/datatype/.libs src/mpi/datatype/_libs rm -rf src/mpi/datatype/dataloop/.libs src/mpi/datatype/dataloop/_libs rm -rf src/mpi/debugger/.libs src/mpi/debugger/_libs rm -rf src/mpi/errhan/.libs src/mpi/errhan/_libs rm -rf src/mpi/group/.libs src/mpi/group/_libs rm -rf src/mpi/info/.libs src/mpi/info/_libs rm -rf src/mpi/init/.libs src/mpi/init/_libs rm -rf src/mpi/misc/.libs src/mpi/misc/_libs rm -rf src/mpi/pt2pt/.libs src/mpi/pt2pt/_libs rm -rf src/mpi/request/.libs src/mpi/request/_libs rm -rf src/mpi/rma/.libs src/mpi/rma/_libs rm -rf src/mpi/spawn/.libs src/mpi/spawn/_libs rm -rf src/mpi/timer/.libs src/mpi/timer/_libs rm -rf src/mpi/topo/.libs src/mpi/topo/_libs rm -rf src/mpi_t/.libs src/mpi_t/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/llc/.libs src/mpid/ch3/channels/nemesis/netmod/llc/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mxm/.libs src/mpid/ch3/channels/nemesis/netmod/mxm/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/none/.libs src/mpid/ch3/channels/nemesis/netmod/none/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/ofi/.libs src/mpid/ch3/channels/nemesis/netmod/ofi/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/portals4/.libs src/mpid/ch3/channels/nemesis/netmod/portals4/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/tcp/.libs src/mpid/ch3/channels/nemesis/netmod/tcp/_libs rm -rf src/mpid/ch3/channels/nemesis/src/.libs src/mpid/ch3/channels/nemesis/src/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/monitor/.libs src/mpid/ch3/channels/nemesis/utils/monitor/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/replacements/.libs src/mpid/ch3/channels/nemesis/utils/replacements/_libs rm -rf src/mpid/ch3/channels/sock/src/.libs src/mpid/ch3/channels/sock/src/_libs rm -rf src/mpid/ch3/src/.libs src/mpid/ch3/src/_libs rm -rf src/mpid/ch3/util/ftb/.libs src/mpid/ch3/util/ftb/_libs rm -rf src/mpid/ch3/util/sock/.libs src/mpid/ch3/util/sock/_libs rm -rf src/mpid/ch4/generic/.libs src/mpid/ch4/generic/_libs rm -rf src/mpid/ch4/netmod/ofi/.libs src/mpid/ch4/netmod/ofi/_libs rm -rf src/mpid/ch4/netmod/portals4/.libs src/mpid/ch4/netmod/portals4/_libs rm -rf src/mpid/ch4/netmod/stubnm/.libs src/mpid/ch4/netmod/stubnm/_libs rm -rf src/mpid/ch4/netmod/ucx/.libs src/mpid/ch4/netmod/ucx/_libs rm -rf src/mpid/ch4/shm/posix/.libs src/mpid/ch4/shm/posix/_libs rm -rf src/mpid/ch4/shm/src/.libs src/mpid/ch4/shm/src/_libs rm -rf src/mpid/ch4/shm/stubshm/.libs src/mpid/ch4/shm/stubshm/_libs rm -rf src/mpid/ch4/src/.libs src/mpid/ch4/src/_libs rm -rf src/mpid/common/bc/.libs src/mpid/common/bc/_libs rm -rf src/mpid/common/hcoll/.libs src/mpid/common/hcoll/_libs rm -rf src/mpid/common/sched/.libs src/mpid/common/sched/_libs rm -rf src/mpid/common/shm/.libs src/mpid/common/shm/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pm/util/.libs src/pm/util/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/util/assert/.libs src/util/assert/_libs rm -rf src/util/cvar/.libs src/util/cvar/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs ( cd test && /usr/bin/make clean ) make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test' Making clean in mpi make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi' Making clean in util make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/util' rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/util' Making clean in attr make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm keyval_double_free keyval_double_free_comm keyval_double_free_type keyval_double_free_win fkeyvaltype__BASIC__L23 fkeyvaltype__STRUCT__L34" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm keyval_double_free keyval_double_free_comm keyval_double_free_type keyval_double_free_win fkeyvaltype__BASIC__L23 fkeyvaltype__STRUCT__L34 rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/attr' Making clean in basic make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/basic' Making clean in datatype make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "blockindexed_misc blockindexed_zero_count concurrent_irecv contents contig_zero_count contigstruct cxx_types dataalign darray_pack darray_cyclic gaddress get_elements get_elements_pairtype getpartelm hindexed_zeros hindexed_block hindexed_block_contents hvecblklen indexed_misc large_count large_type large_type_sendrec large_vec lbub localpack longdouble lots_of_types pairtype_pack pairtype_size_extent sendrecvt2 sendrecvt4 simple_commit simple_pack simple_pack_external simple_pack_external2 simple_resized simple_size_extent sizedtypes slice_pack slice_pack_external struct_derived_zeros struct_empty_el struct_ezhov struct_no_real_types struct_pack structpack2 struct_verydeep struct_zero_count subarray subarray_pack tfree tmatchsize transpose_pack tresized tresized2 triangular_pack typecommit typefree typelb typename unpack unusual_noncontigs vecblklen zeroblks zeroparms" || rm -f blockindexed_misc blockindexed_zero_count concurrent_irecv contents contig_zero_count contigstruct cxx_types dataalign darray_pack darray_cyclic gaddress get_elements get_elements_pairtype getpartelm hindexed_zeros hindexed_block hindexed_block_contents hvecblklen indexed_misc large_count large_type large_type_sendrec large_vec lbub localpack longdouble lots_of_types pairtype_pack pairtype_size_extent sendrecvt2 sendrecvt4 simple_commit simple_pack simple_pack_external simple_pack_external2 simple_resized simple_size_extent sizedtypes slice_pack slice_pack_external struct_derived_zeros struct_empty_el struct_ezhov struct_no_real_types struct_pack structpack2 struct_verydeep struct_zero_count subarray subarray_pack tfree tmatchsize transpose_pack tresized tresized2 triangular_pack typecommit typefree typelb typename unpack unusual_noncontigs vecblklen zeroblks zeroparms rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/datatype' Making clean in coll make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allgather_struct allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 gather_big iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 nbicbarrier nbicallgather nbicallgatherv nbicallreduce nbicbcast nbicalltoall nbicalltoallw nbicalltoallv nbicgather nbicgatherv nbicreduce nbicscatter nbicscatterv neighb_coll bcast__BASIC__L24 bcast__BASIC__L25 bcast__STRUCT__L35" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allgather_struct allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 gather_big iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 nbicbarrier nbicallgather nbicallgatherv nbicallreduce nbicbcast nbicalltoall nbicalltoallw nbicalltoallv nbicgather nbicgatherv nbicreduce nbicscatter nbicscatterv neighb_coll bcast__BASIC__L24 bcast__BASIC__L25 bcast__STRUCT__L35 rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/coll' Making clean in comm make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe_intercomm comm_idup comm_idup_mul comm_idup_overlap comm_idup_isend comm_idup_nb comm_idup_iallreduce comm_idup_comm comm_idup_comm2 comm_create_group_idup comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe_intercomm comm_idup comm_idup_mul comm_idup_overlap comm_idup_isend comm_idup_nb comm_idup_iallreduce comm_idup_comm comm_idup_comm2 comm_create_group_idup comm_info rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/comm' Making clean in errhan make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errhan' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "adderr commcall errfatal predef_eh errstring2 dynamic_errcode_predefined_errclass" || rm -f adderr commcall errfatal predef_eh errstring2 dynamic_errcode_predefined_errclass rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errhan' Making clean in group make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/group' Making clean in info make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/info' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoget infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoget infoenv rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/info' Making clean in init make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/init' Making clean in pt2pt make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel isendirecv eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel scancel_unmatch sendflood sendrecv2 sendrecv3 waitany_null probe_unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status many_isend manylmt huge_underflow huge_anysrc huge_dupcomm dtype_send recv_any irecv_any large_tag pingping__BASIC__L28 sendrecv1__BASIC__L29 sendself__BASIC__L30 sendrecv1__STRUCT__L38 sendself__STRUCT__L39 pingping__STRUCT__L40" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel isendirecv eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel scancel_unmatch sendflood sendrecv2 sendrecv3 waitany_null probe_unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status many_isend manylmt huge_underflow huge_anysrc huge_dupcomm dtype_send recv_any irecv_any large_tag pingping__BASIC__L28 sendrecv1__BASIC__L29 sendself__BASIC__L30 sendrecv1__STRUCT__L38 sendself__STRUCT__L39 pingping__STRUCT__L40 rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/pt2pt' Making clean in rma make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allocmem test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfidx accfence2 adlb_mimic1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_shared_create_allocshm win_shared_create_no_allocshm win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double fetch_and_op_char_hwacc fetch_and_op_short_hwacc fetch_and_op_int_hwacc fetch_and_op_long_hwacc fetch_and_op_double_hwacc fetch_and_op_long_double_hwacc fetch_and_op_char_accop_hwacc fetch_and_op_short_accop_hwacc fetch_and_op_int_accop_hwacc fetch_and_op_long_accop_hwacc fetch_and_op_double_accop_hwacc fetch_and_op_long_double_accop_hwacc get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma_contig badrma nb_test acc_loc acc_ordering fence_shm get_struct rput_local_comp racc_local_comp at_complete atomic_rmw_fop atomic_rmw_cas atomic_rmw_gacc atomic_get_short_int atomic_get_2int atomic_get_long_int atomic_get_float_int atomic_get_double_int atomic_get_long_double_int acc_pairtype manyget derived_acc_flush_local large_acc_flush_local large_small_acc put_flush_get acc_flush_get gacc_flush_get fop_flush_get cas_flush_get win_shared_put_flush_load win_shared_acc_flush_load win_shared_gacc_flush_load win_shared_fop_flush_load win_shared_cas_flush_load overlap_wins_put overlap_wins_acc overlap_wins_gacc overlap_wins_fop overlap_wins_cas rget_unlock lock_nested rget_testall win_shared_query_null aint accfence1__BASIC__L31 accpscw1__BASIC__L32 epochtest__BASIC__L33 getfence1__BASIC__L34 getfence1__BASIC__L35 lock_contention_dt__BASIC__L36 lock_dt__BASIC__L37 lock_dt_flush__BASIC__L38 lock_dt_flushlocal__BASIC__L39 lockall_dt__BASIC__L40 lockall_dt_flush__BASIC__L41 lockall_dt_flushall__BASIC__L42 lockall_dt_flushlocal__BASIC__L43 lockall_dt_flushlocalall__BASIC__L44 putfence1__BASIC__L45 putfence1__BASIC__L46 putpscw1__BASIC__L47 accfence1__STRUCT__L41 accpscw1__STRUCT__L42 epochtest__STRUCT__L43 getfence1__STRUCT__L44 lock_contention_dt__STRUCT__L45 lock_dt__STRUCT__L46 lock_dt_flush__STRUCT__L47 lock_dt_flushlocal__STRUCT__L48 lockall_dt__STRUCT__L49 lockall_dt_flush__STRUCT__L50 lockall_dt_flushall__STRUCT__L51 lockall_dt_flushlocal__STRUCT__L52 lockall_dt_flushlocalall__STRUCT__L53 putfence1__STRUCT__L54 putpscw1__STRUCT__L55" || rm -f allocmem test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfidx accfence2 adlb_mimic1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_shared_create_allocshm win_shared_create_no_allocshm win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double fetch_and_op_char_hwacc fetch_and_op_short_hwacc fetch_and_op_int_hwacc fetch_and_op_long_hwacc fetch_and_op_double_hwacc fetch_and_op_long_double_hwacc fetch_and_op_char_accop_hwacc fetch_and_op_short_accop_hwacc fetch_and_op_int_accop_hwacc fetch_and_op_long_accop_hwacc fetch_and_op_double_accop_hwacc fetch_and_op_long_double_accop_hwacc get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma_contig badrma nb_test acc_loc acc_ordering fence_shm get_struct rput_local_comp racc_local_comp at_complete atomic_rmw_fop atomic_rmw_cas atomic_rmw_gacc atomic_get_short_int atomic_get_2int atomic_get_long_int atomic_get_float_int atomic_get_double_int atomic_get_long_double_int acc_pairtype manyget derived_acc_flush_local large_acc_flush_local large_small_acc put_flush_get acc_flush_get gacc_flush_get fop_flush_get cas_flush_get win_shared_put_flush_load win_shared_acc_flush_load win_shared_gacc_flush_load win_shared_fop_flush_load win_shared_cas_flush_load overlap_wins_put overlap_wins_acc overlap_wins_gacc overlap_wins_fop overlap_wins_cas rget_unlock lock_nested rget_testall win_shared_query_null aint accfence1__BASIC__L31 accpscw1__BASIC__L32 epochtest__BASIC__L33 getfence1__BASIC__L34 getfence1__BASIC__L35 lock_contention_dt__BASIC__L36 lock_dt__BASIC__L37 lock_dt_flush__BASIC__L38 lock_dt_flushlocal__BASIC__L39 lockall_dt__BASIC__L40 lockall_dt_flush__BASIC__L41 lockall_dt_flushall__BASIC__L42 lockall_dt_flushlocal__BASIC__L43 lockall_dt_flushlocalall__BASIC__L44 putfence1__BASIC__L45 putfence1__BASIC__L46 putpscw1__BASIC__L47 accfence1__STRUCT__L41 accpscw1__STRUCT__L42 epochtest__STRUCT__L43 getfence1__STRUCT__L44 lock_contention_dt__STRUCT__L45 lock_dt__STRUCT__L46 lock_dt_flush__STRUCT__L47 lock_dt_flushlocal__STRUCT__L48 lockall_dt__STRUCT__L49 lockall_dt_flush__STRUCT__L50 lockall_dt_flushall__STRUCT__L51 lockall_dt_flushlocal__STRUCT__L52 lockall_dt_flushlocalall__STRUCT__L53 putfence1__STRUCT__L54 putpscw1__STRUCT__L55 rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/rma' Making clean in topo make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 dims5 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt" || rm -f cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 dims5 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/topo' Making clean in errors make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors' Making clean in attr make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "keyvalmis" || rm -f keyvalmis rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/attr' Making clean in coll make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "noalias noalias2 noalias3 rerr bcastlength reduce_local nb_noalias nb_rerr ibcastlength" || rm -f noalias noalias2 noalias3 rerr bcastlength reduce_local nb_noalias nb_rerr ibcastlength rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/coll' Making clean in comm make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 too_many_icomms too_many_icomms2 comm_create_nullarg comm_create_group_nullarg comm_get_info_nullarg comm_group_nullarg comm_size_nullarg comm_split_nullarg comm_split_type_nullarg intercomm_create_nullarg subcomm_abort subcomm_abort2 intercomm_abort" || rm -f cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 too_many_icomms too_many_icomms2 comm_create_nullarg comm_create_group_nullarg comm_get_info_nullarg comm_group_nullarg comm_size_nullarg comm_split_nullarg comm_split_type_nullarg intercomm_create_nullarg subcomm_abort subcomm_abort2 intercomm_abort rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/comm' Making clean in datatype make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "getcnterr type_contiguous_nullarg type_extent_nullarg type_get_extent_nullarg type_get_true_extent_nullarg type_get_true_extent_x_nullarg type_lb_nullarg type_ub_nullarg type_size_x_nullarg type_vector_nullarg" || rm -f getcnterr type_contiguous_nullarg type_extent_nullarg type_get_extent_nullarg type_get_true_extent_nullarg type_get_true_extent_x_nullarg type_lb_nullarg type_ub_nullarg type_size_x_nullarg type_vector_nullarg rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/datatype' Making clean in group make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "gerr group_difference_nullarg group_intersection_nullarg group_range_excl_nullarg group_range_incl_nullarg group_rank_nullarg group_size_nullarg group_translate_ranks_nullarg group_union_nullarg" || rm -f gerr group_difference_nullarg group_intersection_nullarg group_range_excl_nullarg group_range_incl_nullarg group_rank_nullarg group_size_nullarg group_translate_ranks_nullarg group_union_nullarg rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/group' Making clean in pt2pt make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa" || rm -f proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/pt2pt' Making clean in rma make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op" || rm -f winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/rma' Making clean in topo make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartsmall" || rm -f cartsmall rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/topo' Making clean in basic make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "lefthandles debabort" || rm -f lefthandles debabort rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/basic' Making clean in faults make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/faults' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "pt2ptf1 pt2ptf2 collf1 collf2" || rm -f pt2ptf1 pt2ptf2 collf1 collf2 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/faults' Making clean in io make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "fileerrret openerr file_errhdl" || rm -f fileerrret openerr file_errhdl rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/io' Making clean in f77 make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' Making clean in io make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf" || rm -f uerrhandf rm -f *.o make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77/io' make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' Making clean in f90 make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' Making clean in io make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf90" || rm -f uerrhandf90 rm -f *.o make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90/io' make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' Making clean in cxx make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' Making clean in io make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrretx errgetfilex throwtestfilex" || rm -f fileerrretx errgetfilex throwtestfilex rm -f *.o make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/io' Making clean in errhan make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commerrx errgetx errsetx throwtest" || rm -f commerrx errgetx errsetx throwtest rm -f *.o make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/errhan' make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' Making clean in spawn make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "badport unpub lookup_name connect_timeout_no_accept connect_timeout_mismatch" || rm -f badport unpub lookup_name connect_timeout_no_accept connect_timeout_mismatch rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/spawn' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors' Making clean in manual make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual' Making clean in mpi_t make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size" || rm -f mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual/mpi_t' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual' test -z "summary.xml summary.tap summary.junit.xml test-port" || rm -f summary.xml summary.tap summary.junit.xml test-port test -z "singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault" || rm -f singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual' Making clean in perf make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/perf' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "transp_datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf" || rm -f transp_datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/perf' Making clean in mpi_t make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpi_t_str mpit_vars cvarwrite getindex" || rm -f mpi_t_str mpit_vars cvarwrite getindex rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/mpi_t' Making clean in impls make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls' Making clean in mpich make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' Making clean in mpi_t make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "collparmt" || rm -f collparmt rm -f *.o make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich/mpi_t' make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls' Making clean in ckpoint make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ckpoint' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "write_ckpoint" || rm -f write_ckpoint rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ckpoint' Making clean in ft make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ft' Making clean in dtpools make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' Making clean in src make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/src' rm -rf .libs _libs test -z "libdtpools.la" || rm -f libdtpools.la rm -f ./so_locations rm -f *.o rm -f *.lo make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/src' Making clean in include make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/include' rm -rf .libs _libs rm -f *.lo make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/include' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' rm -rf .libs _libs rm -f *.lo make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' Making clean in io make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml rm -f testfile testfile.* test -z "rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io simple_collective external32_derived_dtype tst_fileview i_bigtype i_hindexed_io i_rdwrord i_setviewcur i_aggregation1 i_aggregation2 i_coll_test i_darray_read i_hindexed i_noncontig_coll i_noncontig_coll2 i_types_with_zeros" || rm -f rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io simple_collective external32_derived_dtype tst_fileview i_bigtype i_hindexed_io i_rdwrord i_setviewcur i_aggregation1 i_aggregation2 i_coll_test i_darray_read i_hindexed i_noncontig_coll i_noncontig_coll2 i_types_with_zeros rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/io' Making clean in f77 make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77' Making clean in util make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/util' rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/util' Making clean in attr make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f commattr4f typeattrf typeattr2f typeattr3f" || rm -f attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f commattr4f typeattrf typeattr2f typeattr3f rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/attr' Making clean in datatype make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f bottom" || rm -f typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f bottom rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/datatype' Making clean in coll make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf" || rm -f uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/coll' Making clean in pt2pt make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sendf ssendf rsendf isendf irsendf issendf psendf prsendf pssendf sendrecvf sendrecvreplf statusesf greqf mprobef" || rm -f sendf ssendf rsendf isendf irsendf issendf psendf prsendf pssendf sendrecvf sendrecvreplf statusesf greqf mprobef rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/pt2pt' Making clean in info make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf infotest2f" || rm -f infotestf infotest2f rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/info' Making clean in init make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf" || rm -f baseenvf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/init' Making clean in comm make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef commerrf" || rm -f commnamef commerrf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/comm' Making clean in topo make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf dgraph_wgtf dgraph_unwgtf" || rm -f cartcrf dgraph_wgtf dgraph_unwgtf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/topo' Making clean in ext make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf ctypesinf c2fmult" || rm -f c2f2cf ctypesinf c2fmult rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/ext' Making clean in profile make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f" || rm -f profile1f rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/profile' Making clean in spawn make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/spawn' Making clean in io make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof i_setviewcurf iwriteatallf" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof i_setviewcurf iwriteatallf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/io' Making clean in rma make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f aintf" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f aintf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/rma' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77' Making clean in f90 make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90' Making clean in util make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/util' rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/util' Making clean in timer make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/timer' Making clean in attr make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 commattr4f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 commattr4f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/attr' Making clean in coll make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/coll' Making clean in datatype make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 bottom structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 bottom structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/datatype' Making clean in pt2pt make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sendf90 ssendf90 rsendf90 isendf90 irsendf90 issendf90 psendf90 prsendf90 pssendf90 sendrecvf90 sendrecvreplf90 statusesf90 greqf90 mprobef90" || rm -f sendf90 ssendf90 rsendf90 isendf90 irsendf90 issendf90 psendf90 prsendf90 pssendf90 sendrecvf90 sendrecvreplf90 statusesf90 greqf90 mprobef90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/pt2pt' Making clean in info make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/info' Making clean in comm make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/comm' Making clean in topo make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/topo' Making clean in ext make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/ext' Making clean in init make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/init' Making clean in misc make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/misc' Making clean in f90types make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/f90types' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "createf90types" || rm -f createf90types rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/f90types' Making clean in profile make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f90" || rm -f profile1f90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/profile' Making clean in rma make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 aintf90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 aintf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/rma' Making clean in spawn make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/spawn' Making clean in io make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 i_setviewcurf90 iwriteatallf90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 i_setviewcurf90 iwriteatallf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/io' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90' Making clean in cxx make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' Making clean in util make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/util' rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/util' Making clean in attr make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex__BASIC__L26" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex__BASIC__L26 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/attr' Making clean in pt2pt make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/pt2pt' Making clean in init make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/init' Making clean in info make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/info' Making clean in comm make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/comm' Making clean in coll make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk" || rm -f arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/coll' Making clean in datatype make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typecntsx typenamex typemiscx packsizex__BASIC__L27" || rm -f typecntsx typenamex typemiscx packsizex__BASIC__L27 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/datatype' Making clean in errhan make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/errhan' Making clean in topo make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/topo' Making clean in io make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/io' Making clean in rma make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/rma' Making clean in spawn make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/spawn' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' Making clean in threads make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads' Making clean in util make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/util' rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/util' Making clean in pt2pt make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/pt2pt' Making clean in comm make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_create_group_threads2 comm_idup idup_deadlock ctxidup idup_nb idup_comm_gen" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_create_group_threads2 comm_idup idup_deadlock ctxidup idup_nb idup_comm_gen rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/comm' Making clean in init make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "initth" || rm -f initth rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/init' Making clean in mpi_t make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_threading" || rm -f mpit_threading rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/mpi_t' Making clean in spawn make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/spawn' Making clean in rma make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multirma multiget multifence" || rm -f multirma multiget multifence rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/rma' Making clean in coll make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "iallred allred" || rm -f iallred allred rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/coll' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads' Making clean in spawn make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns spawn_rootargs" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns spawn_rootargs rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/spawn' Making clean in ft make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ft' Making clean in . make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi' Making clean in commands make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/commands' Making clean in . make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test' test -z "" || rm -f test -z " " || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/fortran/mpif_h/*.o rm -f src/binding/fortran/mpif_h/*.lo rm -f src/binding/fortran/use_mpi/*.o rm -f src/binding/fortran/use_mpi/*.lo rm -f src/binding/fortran/use_mpi_f08/*.o rm -f src/binding/fortran/use_mpi_f08/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/coll/algorithms/recexchalgo/*.o rm -f src/mpi/coll/algorithms/recexchalgo/*.lo rm -f src/mpi/coll/algorithms/stubalgo/*.o rm -f src/mpi/coll/algorithms/stubalgo/*.lo rm -f src/mpi/coll/algorithms/treealgo/*.o rm -f src/mpi/coll/algorithms/treealgo/*.lo rm -f src/mpi/coll/allgather/*.o rm -f src/mpi/coll/allgather/*.lo rm -f src/mpi/coll/allgatherv/*.o rm -f src/mpi/coll/allgatherv/*.lo rm -f src/mpi/coll/allreduce/*.o rm -f src/mpi/coll/allreduce/*.lo rm -f src/mpi/coll/allreduce_group/*.o rm -f src/mpi/coll/allreduce_group/*.lo rm -f src/mpi/coll/alltoall/*.o rm -f src/mpi/coll/alltoall/*.lo rm -f src/mpi/coll/alltoallv/*.o rm -f src/mpi/coll/alltoallv/*.lo rm -f src/mpi/coll/alltoallw/*.o rm -f src/mpi/coll/alltoallw/*.lo rm -f src/mpi/coll/barrier/*.o rm -f src/mpi/coll/barrier/*.lo rm -f src/mpi/coll/bcast/*.o rm -f src/mpi/coll/bcast/*.lo rm -f src/mpi/coll/exscan/*.o rm -f src/mpi/coll/exscan/*.lo rm -f src/mpi/coll/gather/*.o rm -f src/mpi/coll/gather/*.lo rm -f src/mpi/coll/gatherv/*.o rm -f src/mpi/coll/gatherv/*.lo rm -f src/mpi/coll/iallgather/*.o rm -f src/mpi/coll/iallgather/*.lo rm -f src/mpi/coll/iallgatherv/*.o rm -f src/mpi/coll/iallgatherv/*.lo rm -f src/mpi/coll/iallreduce/*.o rm -f src/mpi/coll/iallreduce/*.lo rm -f src/mpi/coll/ialltoall/*.o rm -f src/mpi/coll/ialltoall/*.lo rm -f src/mpi/coll/ialltoallv/*.o rm -f src/mpi/coll/ialltoallv/*.lo rm -f src/mpi/coll/ialltoallw/*.o rm -f src/mpi/coll/ialltoallw/*.lo rm -f src/mpi/coll/ibarrier/*.o rm -f src/mpi/coll/ibarrier/*.lo rm -f src/mpi/coll/ibcast/*.o rm -f src/mpi/coll/ibcast/*.lo rm -f src/mpi/coll/iexscan/*.o rm -f 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src/mpi/coll/src/*.o rm -f src/mpi/coll/src/*.lo rm -f src/mpi/coll/transports/gentran/*.o rm -f src/mpi/coll/transports/gentran/*.lo rm -f src/mpi/coll/transports/stubtran/*.o rm -f src/mpi/coll/transports/stubtran/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/datatype/dataloop/*.o rm -f src/mpi/datatype/dataloop/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f src/mpi/info/*.o rm -f src/mpi/info/*.lo rm -f src/mpi/init/*.o rm -f src/mpi/init/*.lo rm -f src/mpi/misc/*.o rm -f src/mpi/misc/*.lo rm -f src/mpi/pt2pt/*.o rm -f src/mpi/pt2pt/*.lo rm -f src/mpi/request/*.o rm -f src/mpi/request/*.lo rm -f src/mpi/rma/*.o rm -f src/mpi/rma/*.lo rm -f src/mpi/spawn/*.o rm -f src/mpi/spawn/*.lo rm -f src/mpi/timer/*.o rm -f src/mpi/timer/*.lo rm -f src/mpi/topo/*.o rm -f src/mpi/topo/*.lo rm -f src/mpi_t/*.o rm -f src/mpi_t/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/llc/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/llc/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/ofi/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/ofi/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.lo rm -f src/mpid/ch3/channels/nemesis/src/*.o rm -f src/mpid/ch3/channels/nemesis/src/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.o rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.o rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.lo rm -f src/mpid/ch3/channels/sock/src/*.o rm -f src/mpid/ch3/channels/sock/src/*.lo rm -f src/mpid/ch3/src/*.o rm -f src/mpid/ch3/src/*.lo rm -f src/mpid/ch3/util/ftb/*.o rm -f src/mpid/ch3/util/ftb/*.lo rm -f src/mpid/ch3/util/sock/*.o rm -f src/mpid/ch3/util/sock/*.lo rm -f src/mpid/ch4/generic/*.o rm -f src/mpid/ch4/generic/*.lo rm -f src/mpid/ch4/netmod/ofi/*.o rm -f src/mpid/ch4/netmod/ofi/*.lo rm -f src/mpid/ch4/netmod/portals4/*.o rm -f src/mpid/ch4/netmod/portals4/*.lo rm -f src/mpid/ch4/netmod/stubnm/*.o rm -f src/mpid/ch4/netmod/stubnm/*.lo rm -f src/mpid/ch4/netmod/ucx/*.o rm -f src/mpid/ch4/netmod/ucx/*.lo rm -f src/mpid/ch4/shm/posix/*.o rm -f src/mpid/ch4/shm/posix/*.lo rm -f src/mpid/ch4/shm/src/*.o rm -f src/mpid/ch4/shm/src/*.lo rm -f src/mpid/ch4/shm/stubshm/*.o rm -f src/mpid/ch4/shm/stubshm/*.lo rm -f src/mpid/ch4/src/*.o rm -f src/mpid/ch4/src/*.lo rm -f src/mpid/common/bc/*.o rm -f src/mpid/common/bc/*.lo rm -f src/mpid/common/hcoll/*.o rm -f src/mpid/common/hcoll/*.lo rm -f src/mpid/common/sched/*.o rm -f src/mpid/common/sched/*.lo rm -f src/mpid/common/shm/*.o rm -f src/mpid/common/shm/*.lo rm -f src/mutex/*.o rm -f src/mutex/*.lo rm -f src/nameserv/file/*.o rm -f src/nameserv/file/*.lo rm -f src/nameserv/pmi/*.o rm -f src/nameserv/pmi/*.lo rm -f src/pm/gforker/*.o rm -f src/pm/remshell/*.o rm -f src/pm/util/*.o rm -f src/pm/util/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/util/assert/*.o rm -f src/util/assert/*.lo rm -f src/util/cvar/*.o rm -f src/util/cvar/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f *.lo make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' Making clean in examples make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' Running Executable WITHOUT threads to time it out Executing: /usr/bin/make -j18 -l36.0 stdout: if test ! -h ./src/include/mpio.h ; then \ rm -f ./src/include/mpio.h ; \ ( cd ./src/include && \ ln -s ../mpi/romio/include/mpio.h ) ; \ fi /usr/bin/make all-recursive make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' Making all in src/mpl make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' CC src/bt/mpl_bt.lo CC src/dbg/mpl_dbg.lo CC src/env/mpl_env.lo CC src/mem/mpl_trmem.lo CC src/msg/mpl_msg.lo CC src/sock/mpl_sock.lo CC src/sock/mpl_sockaddr.lo CC src/sock/mpl_host.lo CC src/str/mpl_str.lo CC src/str/mpl_argstr.lo CC src/str/mpl_arg_serial.lo CC src/thread/mpl_thread.lo CC src/thread/mpl_thread_win.lo CC src/thread/mpl_thread_solaris.lo CC src/thread/mpl_thread_argobots.lo CC src/thread/mpl_thread_posix.lo CC src/timer/mpl_timer_clock_gettime.lo CC src/timer/mpl_timer_gcc_ia64_cycle.lo CC src/timer/mpl_timer_gethrtime.lo CC src/timer/mpl_timer_gettimeofday.lo CC src/timer/mpl_timer_linux86_cycle.lo CC src/timer/mpl_timer_ppc64_cycle.lo CC src/timer/mpl_timer_mach_absolute_time.lo CC src/timer/mpl_timer_query_performance_counter.lo CC src/timer/mpl_timer_win86_cycle.lo CC src/timer/mpl_timer_device.lo CC src/shm/mpl_shm.lo CC src/shm/mpl_shm_sysv.lo CC src/shm/mpl_shm_mmap.lo CC src/shm/mpl_shm_win.lo CCLD libmpl.la make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' Making all in src/openpa make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making all in src make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' /usr/bin/make all-am make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' CC opa_primitives.lo CC opa_queue.lo CCLD libopa.la make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making all in test make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making all in src/hwloc make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making all in include make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making all in hwloc make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' CC traversal.lo CC topology.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC shmem.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-xml-libxml.lo CC topology-linux.lo CC topology-hardwired.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making all in src/mpi/romio make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' CC mpi-io/close.lo CC mpi-io/delete.lo CC mpi-io/file_c2f.lo CC mpi-io/file_f2c.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_info.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_size.lo CC mpi-io/get_view.lo CC mpi-io/iread.lo CC mpi-io/iread_all.lo CC mpi-io/iread_at.lo CC mpi-io/iread_atall.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_all.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_atall.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/prealloc.lo CC mpi-io/rd_atallb.lo CC mpi-io/rd_atalle.lo CC mpi-io/read.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_atall.lo CC mpi-io/read_ord.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/mpich/mpio_file.lo CC mpi-io/glue/mpich/mpio_err.lo CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC mpi-io/mpir_cst_filesys.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_coll.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_coll.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str.lo CC adio/common/ad_read_str_naive.lo CC adio/common/ad_resize.lo CC adio/common/ad_seek.lo CC adio/common/ad_set_sh_fp.lo CC adio/common/ad_set_view.lo CC adio/common/ad_subarray.lo CC adio/common/ad_wait.lo CC adio/common/ad_wait_fake.lo CC adio/common/ad_write.lo CC adio/common/ad_write_coll.lo CC adio/common/ad_write_nolock.lo CC adio/common/ad_write_str.lo CC adio/common/ad_write_str_naive.lo CC adio/common/adi_close.lo CC adio/common/byte_offset.lo CC adio/common/cb_config_list.lo CC adio/common/eof_offset.lo CC adio/common/error.lo CC adio/common/flatten.lo CC adio/common/get_fp_posn.lo CC adio/common/greq_fns.lo CC adio/common/heap_sort.lo CC adio/common/iscontig.lo CC adio/common/lock.lo CC adio/common/malloc.lo CC adio/common/shfp_fname.lo CC adio/common/status_setb.lo CC adio/common/strfns.lo CC adio/common/system_hints.lo CC adio/common/hint_fns.lo CC adio/common/ad_threaded_io.lo CC adio/common/p2p_aggregation.lo CC adio/common/onesided_aggregation.lo CC adio/common/ad_tuning.lo CC adio/common/utils.lo CCLD libromio.la make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making all in src/pm/hydra make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making all in mpl make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' CC src/bt/mpl_bt.lo CC src/dbg/mpl_dbg.lo CC src/env/mpl_env.lo CC src/mem/mpl_trmem.lo CC src/msg/mpl_msg.lo CC src/sock/mpl_sock.lo CC src/sock/mpl_sockaddr.lo CC src/sock/mpl_host.lo CC src/str/mpl_str.lo CC src/str/mpl_argstr.lo CC src/str/mpl_arg_serial.lo CC src/thread/mpl_thread.lo CC src/thread/mpl_thread_win.lo CC src/thread/mpl_thread_solaris.lo CC src/thread/mpl_thread_argobots.lo CC src/thread/mpl_thread_posix.lo CC src/timer/mpl_timer_clock_gettime.lo CC src/timer/mpl_timer_gcc_ia64_cycle.lo CC src/timer/mpl_timer_gethrtime.lo CC src/timer/mpl_timer_gettimeofday.lo CC src/timer/mpl_timer_linux86_cycle.lo CC src/timer/mpl_timer_ppc64_cycle.lo CC src/timer/mpl_timer_mach_absolute_time.lo CC src/timer/mpl_timer_query_performance_counter.lo CC src/timer/mpl_timer_win86_cycle.lo CC src/timer/mpl_timer_device.lo CC src/shm/mpl_shm.lo CC src/shm/mpl_shm_sysv.lo CC src/shm/mpl_shm_mmap.lo CC src/shm/mpl_shm_win.lo CCLD libmpl.la make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making all in tools/topo/hwloc/hwloc make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in include make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making all in hwloc make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC shmem.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-xml.lo CC topology-synthetic.lo CC topology-xml-nolibxml.lo CC topology-xml-libxml.lo CC topology-linux.lo CC topology-hardwired.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in . make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' CC utils/alloc/alloc.lo CC utils/args/args.lo CC utils/dbg/dbg.lo CC utils/env/env.lo CC utils/launch/launch.lo CC utils/others/others.lo CC utils/signals/signals.lo CC utils/sock/sock.lo CC utils/string/string.lo CC tools/topo/topo.lo CC tools/topo/hwloc/topo_hwloc.lo CC tools/bootstrap/src/bsci_init.lo CC tools/bootstrap/src/bsci_launch.lo CC tools/bootstrap/src/bsci_finalize.lo CC tools/bootstrap/src/bsci_query_node_list.lo CC tools/bootstrap/src/bsci_query_proxy_id.lo CC tools/bootstrap/src/bsci_query_native_int.lo CC tools/bootstrap/src/bsci_wait.lo CC tools/bootstrap/src/bsci_env.lo CC tools/bootstrap/utils/bscu_wait.lo CC tools/bootstrap/utils/bscu_cb.lo CC tools/bootstrap/external/external_common.lo CC tools/bootstrap/external/external_common_launch.lo CC tools/bootstrap/external/fork_init.lo CC tools/bootstrap/external/user_init.lo CC tools/bootstrap/external/manual_init.lo CC tools/bootstrap/external/rsh_init.lo CC tools/bootstrap/external/rsh_env.lo CC tools/bootstrap/external/ssh_init.lo CC tools/bootstrap/external/ssh.lo CC tools/bootstrap/external/ssh_env.lo CC tools/bootstrap/external/ssh_finalize.lo CC tools/bootstrap/external/slurm_init.lo CC tools/bootstrap/external/slurm_launch.lo CC tools/bootstrap/external/slurm_env.lo CC tools/bootstrap/external/slurm_query_native_int.lo CC tools/bootstrap/external/slurm_query_node_list.lo CC tools/bootstrap/external/slurm_query_proxy_id.lo CC tools/bootstrap/external/ll_init.lo CC tools/bootstrap/external/ll_launch.lo CC tools/bootstrap/external/ll_query_native_int.lo CC tools/bootstrap/external/ll_query_node_list.lo CC tools/bootstrap/external/ll_query_proxy_id.lo CC tools/bootstrap/external/ll_env.lo CC tools/bootstrap/external/lsf_init.lo CC tools/bootstrap/external/lsf_query_native_int.lo CC tools/bootstrap/external/lsf_query_node_list.lo CC tools/bootstrap/external/lsf_env.lo CC tools/bootstrap/external/sge_init.lo CC tools/bootstrap/external/sge_query_native_int.lo CC tools/bootstrap/external/sge_query_node_list.lo CC tools/bootstrap/external/sge_env.lo CC tools/bootstrap/external/pbs_init.lo CC tools/bootstrap/external/pbs_query_native_int.lo CC tools/bootstrap/external/pbs_query_node_list.lo CC tools/bootstrap/external/cobalt_init.lo CC tools/bootstrap/external/cobalt_query_native_int.lo CC tools/bootstrap/external/cobalt_query_node_list.lo CC tools/bootstrap/persist/persist_init.lo CC tools/bootstrap/persist/persist_launch.lo CC tools/bootstrap/persist/persist_wait.lo CC tools/ckpoint/ckpoint.lo CC tools/demux/demux.lo CC tools/demux/demux_poll.lo CC tools/demux/demux_select.lo CC tools/debugger/debugger.lo CC ui/utils/uiu.lo CC pm/pmiserv/pmiserv_pmi.lo CC pm/pmiserv/pmiserv_pmi_v1.lo CC pm/pmiserv/pmiserv_pmi_v2.lo CC pm/pmiserv/pmiserv_pmci.lo CC pm/pmiserv/pmiserv_cb.lo CC pm/pmiserv/pmiserv_utils.lo CC pm/pmiserv/common.lo CC pm/pmiserv/pmi_v2_common.lo CC tools/bootstrap/persist/hydra_persist-persist_server.o CC tools/nameserver/hydra_nameserver-hydra_nameserver.o CC pm/pmiserv/hydra_pmi_proxy-pmip.o CC pm/pmiserv/hydra_pmi_proxy-pmip_utils.o CC pm/pmiserv/hydra_pmi_proxy-pmip_cb.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v1.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v2.o CC pm/pmiserv/hydra_pmi_proxy-common.o CC pm/pmiserv/hydra_pmi_proxy-pmi_v2_common.o CC ui/mpich/mpiexec.o CC ui/mpich/utils.o CCLD libhydra.la CCLD hydra_persist CCLD hydra_nameserver CCLD hydra_pmi_proxy CCLD libpm.la CCLD mpiexec.hydra make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making all in . make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' CC src/mpi/attr/lib_libmpi_la-attrutil.lo CC src/mpi/attr/lib_libmpi_la-dup_fn.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_allcomm_nb.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_recursive_doubling.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_brucks.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_ring.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_inter_local_gather_remote_bcast.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_allcomm_nb.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_recursive_doubling.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_brucks.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_ring.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_inter_remote_gather_local_bcast.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_allcomm_nb.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_recursive_doubling.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_reduce_scatter_allgather.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_smp.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_inter_reduce_exchange_bcast.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_allcomm_nb.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_brucks.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_scattered.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_pairwise.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_inter_pairwise_exchange.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_allcomm_nb.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_intra_scattered.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_inter_pairwise_exchange.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_allcomm_nb.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_intra_scattered.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_inter_pairwise_exchange.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_allcomm_nb.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_intra_dissemination.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_intra_smp.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_inter_bcast.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_utils.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_allcomm_nb.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_binomial.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_scatter_recursive_doubling_allgather.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_scatter_ring_allgather.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_inter_remote_send_local_bcast.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_smp.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan_allcomm_nb.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan_intra_recursive_doubling.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_allcomm_nb.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_intra_binomial.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_inter_linear.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_inter_local_gather_remote_send.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv_allcomm_nb.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv_allcomm_linear.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_allcomm_nb.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_recursive_halving.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_pairwise.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_recursive_doubling.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_noncommutative.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_inter_remote_reduce_local_scatter.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_allcomm_nb.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_recursive_halving.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_pairwise.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_recursive_doubling.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_noncommutative.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_inter_remote_reduce_local_scatter.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_allcomm_nb.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_intra_binomial.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_intra_reduce_scatter_gather.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_intra_smp.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_inter_local_reduce_remote_send.lo CC src/mpi/coll/scan/lib_libmpi_la-scan_allcomm_nb.lo CC src/mpi/coll/scan/lib_libmpi_la-scan_intra_recursive_doubling.lo CC src/mpi/coll/scan/lib_libmpi_la-scan_intra_smp.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_allcomm_nb.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_intra_binomial.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_inter_linear.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_inter_remote_send_local_scatter.lo CC src/mpi/coll/scatterv/lib_libmpi_la-scatterv_allcomm_linear.lo CC src/mpi/coll/scatterv/lib_libmpi_la-scatterv_allcomm_nb.lo CC src/mpi/coll/neighbor_allgather/lib_libmpi_la-neighbor_allgather_allcomm_nb.lo CC src/mpi/coll/neighbor_allgatherv/lib_libmpi_la-neighbor_allgatherv_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoall/lib_libmpi_la-neighbor_alltoall_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoallv/lib_libmpi_la-neighbor_alltoallv_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoallw/lib_libmpi_la-neighbor_alltoallw_allcomm_nb.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recursive_doubling.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_brucks.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_ring.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_inter_local_gather_remote_bcast.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_gentran_algos.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recexch_distance_doubling.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recexch_distance_halving.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_gentran_brucks.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_recursive_doubling.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_brucks.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_ring.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_inter_remote_gather_local_bcast.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_gentran_algos.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_recexch_distance_doubling.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_recexch_distance_halving.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_gentran_ring.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_naive.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_reduce_scatter_allgather.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_recursive_doubling.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_smp.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_inter_remote_reduce_local_bcast.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_gentran_algos.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_recexch_single_buffer.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_recexch_multiple_buffer.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_tree_kary.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_tree_knomial.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_inplace.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_brucks.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_permuted_sendrecv.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_pairwise.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_inter_pairwise_exchange.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv_intra_inplace.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv_intra_blocked.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv_inter_pairwise_exchange.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_intra_inplace.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_intra_blocked.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_inter_pairwise_exchange.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_intra_recursive_doubling.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_inter_bcast.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_intra_recexch.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_binomial.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_ring_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_recursive_doubling_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_smp.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_inter_flat.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_gentran_algos.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_tree.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_recexch_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_ring.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_utils.lo CC src/mpi/coll/iexscan/lib_libmpi_la-iexscan_intra_recursive_doubling.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_intra_binomial.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_inter_short.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_inter_long.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_gentran_algos.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_intra_tree.lo CC src/mpi/coll/igatherv/lib_libmpi_la-igatherv_allcomm_linear.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recursive_halving.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_pairwise.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recursive_doubling.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_noncommutative.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_inter_remote_reduce_local_scatterv.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_gentran_algos.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recexch.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recursive_halving.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_pairwise.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recursive_doubling.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_noncommutative.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_inter_remote_reduce_local_scatterv.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_gentran_algos.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recexch.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_binomial.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_reduce_scatter_gather.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_smp.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_inter_local_reduce_remote_send.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_gentran_algos.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_tree.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_ring.lo CC src/mpi/coll/iscan/lib_libmpi_la-iscan_intra_recursive_doubling.lo CC src/mpi/coll/iscan/lib_libmpi_la-iscan_intra_smp.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_intra_binomial.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_inter_linear.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_inter_remote_send_local_scatter.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_gentran_algos.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_intra_tree.lo CC src/mpi/coll/iscatterv/lib_libmpi_la-iscatterv_allcomm_linear.lo CC src/mpi/coll/ineighbor_allgather/lib_libmpi_la-ineighbor_allgather_allcomm_linear.lo CC src/mpi/coll/ineighbor_allgatherv/lib_libmpi_la-ineighbor_allgatherv_allcomm_linear.lo CC src/mpi/coll/ineighbor_alltoall/lib_libmpi_la-ineighbor_alltoall_allcomm_linear.lo CC src/mpi/coll/ineighbor_alltoallv/lib_libmpi_la-ineighbor_alltoallv_allcomm_linear.lo CC src/mpi/coll/ineighbor_alltoallw/lib_libmpi_la-ineighbor_alltoallw_allcomm_linear.lo CC src/mpi/coll/op/lib_libmpi_la-opsum.lo CC src/mpi/coll/op/lib_libmpi_la-opmax.lo CC src/mpi/coll/op/lib_libmpi_la-opmin.lo CC src/mpi/coll/op/lib_libmpi_la-opband.lo CC src/mpi/coll/op/lib_libmpi_la-opbor.lo CC src/mpi/coll/op/lib_libmpi_la-opbxor.lo CC src/mpi/coll/op/lib_libmpi_la-opland.lo CC src/mpi/coll/op/lib_libmpi_la-oplor.lo CC src/mpi/coll/op/lib_libmpi_la-oplxor.lo CC src/mpi/coll/op/lib_libmpi_la-opprod.lo CC src/mpi/coll/op/lib_libmpi_la-opminloc.lo CC src/mpi/coll/op/lib_libmpi_la-opmaxloc.lo CC src/mpi/coll/op/lib_libmpi_la-opno_op.lo CC src/mpi/coll/op/lib_libmpi_la-opreplace.lo CC src/mpi/comm/lib_libmpi_la-commutil.lo CC src/mpi/comm/lib_libmpi_la-contextid.lo CC src/mpi/datatype/lib_libmpi_la-typeutil.lo CC src/mpi/datatype/lib_libmpi_la-ext32_datatype.lo CC src/mpi/datatype/lib_libmpi_la-looputil.lo CC src/mpi/datatype/lib_libmpi_la-type_blockindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_create_pairtype.lo CC src/mpi/datatype/lib_libmpi_la-type_debug.lo CC src/mpi/datatype/lib_libmpi_la-type_flatten.lo CC src/mpi/errhan/lib_libmpi_la-errutil.lo CC src/mpi/errhan/lib_libmpi_la-dynerrutil.lo CC src/mpi/group/lib_libmpi_la-grouputil.lo CC src/mpi/info/lib_libmpi_la-infoutil.lo CC src/mpi/init/lib_libmpi_la-initinfo.lo CC src/mpi/init/lib_libmpi_la-async.lo CC src/mpi/init/lib_libmpi_la-netloc_util.lo CC src/mpi/pt2pt/lib_libmpi_la-bsendutil.lo CC src/mpi/request/lib_libmpi_la-mpir_request.lo CC src/mpi/rma/lib_libmpi_la-winutil.lo CC src/mpi/rma/lib_libmpi_la-rmatypeutil.lo CC src/mpi/topo/lib_libmpi_la-topoutil.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-fdebug.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-setbot.lo F77 src/binding/fortran/mpif_h/setbotf.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_util.lo CC src/glue/romio/lib_libmpi_la-glue_romio.lo CC src/mpi_t/lib_libmpi_la-mpit.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-exscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-redscatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouptranksf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_unionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupinterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupdifff.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_inclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_exclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprinclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprexclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dup_with_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_splitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commtesticf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrsizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrgroupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iccreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-icmergef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-topo_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dims_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graphdims_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cartdim_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_coordsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbcountf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbrsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_shiftf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_subf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getpnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_library_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhcreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhfreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_stringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_classf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initializedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-abortf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-close_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_acceptf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_connectf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdiscf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commparentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_joinf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_spawnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-spawnmultf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-lookup_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-open_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-publish_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpubnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_completef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_fencef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_postf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocate_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_shared_queryf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_create_dynamicf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_attachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_detachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fetch_and_opf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-compare_and_swapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rputf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-raccumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rget_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flushf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_local_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrclassf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrcodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrstringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgetnamf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqcompletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqstartf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isthrmainf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-query_threadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statgetclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statsetelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typenewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typefreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetcntsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetenvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_match_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-windelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alloc_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filegeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fileseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-free_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognthkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infovallenf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_setf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_externalf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packesizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reqgetstatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedarrayf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechindf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechvecf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecindbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_create_hindexed_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecresizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecstructf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecsubarrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetextentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegtextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wingeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_commutativef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_create_adjacentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighbors_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighborsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-improbef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-imrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_idupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibarrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iexscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_split_typef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-status_set_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_true_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_size_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_create_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_ackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_get_ackedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_revokef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_shrinkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_agreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_openf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_closef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-aint_addf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-aint_difff.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo rm -f src/binding/fortran/use_mpi/mpifnoext.h sed -e 's/^C/\!/g' -e '/EXTERNAL/d' \ -e '/REAL\*8/d' \ -e '/DOUBLE PRECISION/d' \ -e '/MPI_WTICK/d' src/binding/fortran/mpif_h/mpif.h > src/binding/fortran/use_mpi/mpifnoext.h cp -p src/env/mpicc.bash src/env/mpicc cp -p src/env/mpifort.bash src/env/mpifort cp -p src/env/mpicxx.bash src/env/mpicxx CC src/mpi/attr/lib_libmpi_la-attr_delete.lo CC src/mpi/attr/lib_libmpi_la-attr_get.lo CC src/mpi/attr/lib_libmpi_la-attr_put.lo CC src/mpi/attr/lib_libmpi_la-comm_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_get_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_set_attr.lo CC src/mpi/attr/lib_libmpi_la-keyval_create.lo CC src/mpi/attr/lib_libmpi_la-keyval_free.lo CC src/mpi/attr/lib_libmpi_la-type_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-type_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_get_attr.lo CC src/mpi/attr/lib_libmpi_la-type_set_attr.lo CC src/mpi/attr/lib_libmpi_la-win_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-win_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_get_attr.lo CC src/mpi/attr/lib_libmpi_la-win_set_attr.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan.lo CC src/mpi/coll/gather/lib_libmpi_la-gather.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce.lo CC src/mpi/coll/scan/lib_libmpi_la-scan.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter.lo CC src/mpi/coll/scatterv/lib_libmpi_la-scatterv.lo CC src/mpi/coll/neighbor_allgather/lib_libmpi_la-neighbor_allgather.lo CC src/mpi/coll/neighbor_allgatherv/lib_libmpi_la-neighbor_allgatherv.lo CC src/mpi/coll/neighbor_alltoall/lib_libmpi_la-neighbor_alltoall.lo CC src/mpi/coll/neighbor_alltoallv/lib_libmpi_la-neighbor_alltoallv.lo CC src/mpi/coll/neighbor_alltoallw/lib_libmpi_la-neighbor_alltoallw.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast.lo CC src/mpi/coll/iexscan/lib_libmpi_la-iexscan.lo CC src/mpi/coll/igather/lib_libmpi_la-igather.lo CC src/mpi/coll/igatherv/lib_libmpi_la-igatherv.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce.lo CC src/mpi/coll/iscan/lib_libmpi_la-iscan.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter.lo CC src/mpi/coll/iscatterv/lib_libmpi_la-iscatterv.lo CC src/mpi/coll/ineighbor_allgather/lib_libmpi_la-ineighbor_allgather.lo CC src/mpi/coll/ineighbor_allgatherv/lib_libmpi_la-ineighbor_allgatherv.lo CC src/mpi/coll/ineighbor_alltoall/lib_libmpi_la-ineighbor_alltoall.lo CC src/mpi/coll/ineighbor_alltoallv/lib_libmpi_la-ineighbor_alltoallv.lo CC src/mpi/coll/ineighbor_alltoallw/lib_libmpi_la-ineighbor_alltoallw.lo CC src/mpi/coll/op/lib_libmpi_la-op_create.lo CC src/mpi/coll/op/lib_libmpi_la-op_free.lo CC src/mpi/coll/op/lib_libmpi_la-op_commutative.lo CC src/mpi/coll/reduce_local/lib_libmpi_la-reduce_local.lo CC src/mpi/comm/lib_libmpi_la-comm_compare.lo CC src/mpi/comm/lib_libmpi_la-comm_create.lo CC src/mpi/comm/lib_libmpi_la-comm_create_group.lo CC src/mpi/comm/lib_libmpi_la-comm_dup.lo CC src/mpi/comm/lib_libmpi_la-comm_dup_with_info.lo CC src/mpi/comm/lib_libmpi_la-comm_free.lo CC src/mpi/comm/lib_libmpi_la-comm_get_name.lo CC src/mpi/comm/lib_libmpi_la-comm_get_info.lo CC src/mpi/comm/lib_libmpi_la-comm_set_info.lo CC src/mpi/comm/lib_libmpi_la-comm_group.lo CC src/mpi/comm/lib_libmpi_la-comm_idup.lo CC src/mpi/comm/lib_libmpi_la-comm_rank.lo CC src/mpi/comm/lib_libmpi_la-comm_size.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_group.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_size.lo CC src/mpi/comm/lib_libmpi_la-comm_set_name.lo CC src/mpi/comm/lib_libmpi_la-comm_split.lo CC src/mpi/comm/lib_libmpi_la-comm_test_inter.lo CC src/mpi/comm/lib_libmpi_la-intercomm_create.lo CC src/mpi/comm/lib_libmpi_la-intercomm_merge.lo CC src/mpi/comm/lib_libmpi_la-comm_split_type.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_ack.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_get_acked.lo CC src/mpi/comm/lib_libmpi_la-comm_revoke.lo CC src/mpi/comm/lib_libmpi_la-comm_shrink.lo CC src/mpi/comm/lib_libmpi_la-comm_agree.lo CC src/mpi/datatype/lib_libmpi_la-address.lo CC src/mpi/datatype/lib_libmpi_la-get_address.lo CC src/mpi/datatype/lib_libmpi_la-get_count.lo CC src/mpi/datatype/lib_libmpi_la-get_elements.lo CC src/mpi/datatype/lib_libmpi_la-get_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-pack.lo CC src/mpi/datatype/lib_libmpi_la-pack_external.lo CC src/mpi/datatype/lib_libmpi_la-pack_external_size.lo CC src/mpi/datatype/lib_libmpi_la-pack_size.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-type_get_name.lo CC src/mpi/datatype/lib_libmpi_la-type_set_name.lo CC src/mpi/datatype/lib_libmpi_la-type_size.lo CC src/mpi/datatype/lib_libmpi_la-type_size_x.lo CC src/mpi/datatype/lib_libmpi_la-type_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_vector.lo CC src/mpi/datatype/lib_libmpi_la-type_commit.lo CC src/mpi/datatype/lib_libmpi_la-type_indexed.lo CC src/mpi/datatype/lib_libmpi_la-type_hindexed.lo CC 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src/mpi/datatype/lib_libmpi_la-type_create_hindexed_block.lo CC src/mpi/datatype/lib_libmpi_la-type_create_resized.lo CC src/mpi/datatype/lib_libmpi_la-type_create_darray.lo CC src/mpi/datatype/lib_libmpi_la-type_create_subarray.lo CC src/mpi/datatype/lib_libmpi_la-unpack.lo CC src/mpi/datatype/lib_libmpi_la-unpack_external.lo CC src/mpi/errhan/lib_libmpi_la-add_error_code.lo CC src/mpi/errhan/lib_libmpi_la-add_error_class.lo CC src/mpi/errhan/lib_libmpi_la-add_error_string.lo CC src/mpi/errhan/lib_libmpi_la-comm_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_set_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_create.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_free.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_get.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_set.lo CC src/mpi/errhan/lib_libmpi_la-error_class.lo CC 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src/mpi/topo/lib_libmpi_la-graphdimsget.lo CC src/mpi/topo/lib_libmpi_la-graphnbrcnt.lo CC src/mpi/topo/lib_libmpi_la-cartdim_get.lo CC src/mpi/topo/lib_libmpi_la-topo_test.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_create_adj.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_create.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_neighb_count.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_neighb.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-statusf2c.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-statusc2f.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_int.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_real.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_complex.lo CC src/glue/romio/lib_libmpi_la-all_romio_symbols.lo CC src/mutex/lib_libmpi_la-mutex_create.lo CC src/mutex/lib_libmpi_la-mutex_free.lo CC src/mutex/lib_libmpi_la-mutex_lock.lo CC src/mutex/lib_libmpi_la-mutex_unlock.lo CC src/mpi_t/lib_libmpi_la-cat_changed.lo CC src/mpi_t/lib_libmpi_la-cat_get_categories.lo CC src/mpi_t/lib_libmpi_la-cat_get_cvars.lo CC src/mpi_t/lib_libmpi_la-cat_get_info.lo CC src/mpi_t/lib_libmpi_la-cat_get_num.lo CC src/mpi_t/lib_libmpi_la-cat_get_pvars.lo CC src/mpi_t/lib_libmpi_la-cvar_get_info.lo CC src/mpi_t/lib_libmpi_la-cvar_get_num.lo CC src/mpi_t/lib_libmpi_la-cvar_handle_alloc.lo CC src/mpi_t/lib_libmpi_la-cvar_handle_free.lo CC src/mpi_t/lib_libmpi_la-cvar_read.lo CC src/mpi_t/lib_libmpi_la-cvar_write.lo CC src/mpi_t/lib_libmpi_la-enum_get_info.lo CC src/mpi_t/lib_libmpi_la-enum_get_item.lo CC src/mpi_t/lib_libmpi_la-mpit_finalize.lo CC src/mpi_t/lib_libmpi_la-mpit_initthread.lo CC src/mpi_t/lib_libmpi_la-pvar_get_info.lo CC src/mpi_t/lib_libmpi_la-pvar_get_num.lo CC src/mpi_t/lib_libmpi_la-pvar_handle_alloc.lo CC src/mpi_t/lib_libmpi_la-pvar_handle_free.lo CC src/mpi_t/lib_libmpi_la-pvar_read.lo CC src/mpi_t/lib_libmpi_la-pvar_readreset.lo CC src/mpi_t/lib_libmpi_la-pvar_reset.lo CC src/mpi_t/lib_libmpi_la-pvar_session_create.lo CC src/mpi_t/lib_libmpi_la-pvar_session_free.lo CC src/mpi_t/lib_libmpi_la-pvar_start.lo CC src/mpi_t/lib_libmpi_la-pvar_stop.lo CC src/mpi_t/lib_libmpi_la-pvar_write.lo CC src/mpi_t/lib_libmpi_la-cat_get_index.lo CC src/mpi_t/lib_libmpi_la-cvar_get_index.lo CC src/mpi_t/lib_libmpi_la-pvar_get_index.lo CC src/mpi/coll/allreduce_group/lib_libmpi_la-allreduce_group.lo CC src/mpi/coll/src/lib_libmpi_la-coll_impl.lo CC src/mpi/coll/transports/gentran/lib_libmpi_la-gentran_impl.lo CC src/mpi/coll/transports/gentran/lib_libmpi_la-gentran_utils.lo CC src/mpi/coll/transports/gentran/lib_libmpi_la-tsp_gentran.lo CC src/mpi/coll/transports/stubtran/lib_libmpi_la-stubtran_impl.lo CC src/mpi/coll/transports/stubtran/lib_libmpi_la-tsp_stubtran.lo CC src/mpi/coll/algorithms/treealgo/lib_libmpi_la-treealgo.lo CC src/mpi/coll/algorithms/treealgo/lib_libmpi_la-treeutil.lo CC src/mpi/coll/algorithms/recexchalgo/lib_libmpi_la-recexchalgo.lo CC src/mpi/coll/algorithms/stubalgo/lib_libmpi_la-stubalgo.lo CC src/mpi/coll/lib_libmpi_la-helper_fns.lo CC src/mpi/coll/lib_libmpi_la-nbcutil.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-darray_support.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_blockindexed.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_contig.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_indexed.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_pairtype.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_struct.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_vector.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-segment.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-segment_count.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-segment_flatten.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-subarray_support.lo CC src/util/mem/lib_libmpi_la-handlemem.lo CC src/util/mem/lib_libmpi_la-strerror.lo CC src/util/cvar/lib_libmpi_la-mpir_cvars.lo CC src/util/procmap/lib_libmpi_la-local_proc.lo CC src/util/assert/lib_libmpi_la-assert.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_buffer.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_comm.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_comm_spawn_multiple.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_connection.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_recv_pkt.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_recv_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_revoke_pkt.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_send_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_op_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_port.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_recvq.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_request.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_progress.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_ops.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_reqops.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_sync.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_pkthandler.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rndv.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_eager.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_eagersync.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_win_fns.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_abort.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_cancel_recv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_cancel_send.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_disconnect.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_spawn_multiple.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_failure_ack.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_get_all_failed_procs.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_revoke.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_finalize.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_get_universe_size.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_getpname.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_improbe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_imrecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_init.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_iprobe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_irecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_irsend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_isend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_issend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_mprobe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_mrecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_port.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_probe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_recv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_rsend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_send.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_ssend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_startall.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_vc.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_rma.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_rma.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_aint.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_isend_self.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_pg.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_printf.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_finalize.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_init.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_isend.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_isendv.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_istartmsg.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_istartmsgv.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_progress.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_rma_shm.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_win_fns.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3i_comm.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3i_eagernoncontig.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_init.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_mpich.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_ckpt.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_finalize.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_network_poll.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_network.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_debug.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_lmt.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_lmt_shm.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_net_array.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_lmt_dma.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_lmt_vmsplice.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-tcp_finalize.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-tcp_init.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-tcp_send.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-tcp_utility.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-socksm.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-tcp_ckpt.lo CC src/mpid/ch3/channels/nemesis/netmod/none/lib_libmpi_la-none.lo CC src/mpid/ch3/channels/nemesis/utils/monitor/lib_libmpi_la-papi_defs.lo CC src/mpid/ch3/channels/nemesis/utils/replacements/lib_libmpi_la-mkstemp.lo CC src/mpid/common/sched/lib_libmpi_la-mpidu_sched.lo CC src/mpid/common/shm/lib_libmpi_la-mpidu_shm_alloc.lo CC src/mpid/common/shm/lib_libmpi_la-mpidu_shm_barrier.lo CC src/nameserv/pmi/lib_libmpi_la-pmi_nameserv.lo CC src/pmi/simple/lib_libmpi_la-simple_pmiutil.lo CC src/pmi/simple/lib_libmpi_la-simple_pmi.lo MOD src/binding/fortran/use_mpi/mpi_constants.mod-stamp MOD src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp CXX src/binding/cxx/initcxx.lo CC src/env/mpichversion.o CC src/env/mpivars.o MOD src/binding/fortran/use_mpi/mpi_base.mod-stamp MOD src/binding/fortran/use_mpi/mpi.mod-stamp GEN lib/libmpi.la CXXLD lib/libmpicxx.la GEN lib/libmpifort.la CCLD src/env/mpichversion CCLD src/env/mpivars make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' Making all in examples make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' CC cpi.o CCLD cpi make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' =============================================================================== Running make install on MPICH; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make install stdout: /usr/bin/make install-recursive make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' Making install in src/mpl make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' Making install in src/openpa make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making install in src make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[4]: Nothing to be done for `install-exec-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making install in test make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[4]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/home/fbrarda/petsc/arch-opt/lib/pkgconfig' /usr/bin/install -c -m 644 openpa.pc '/home/fbrarda/petsc/arch-opt/lib/pkgconfig' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making install in src/hwloc make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making install in include make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[4]: Nothing to be done for `install-exec-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making install in hwloc make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' /usr/bin/make install-exec-hook make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[5]: Nothing to be done for `install-exec-hook'. make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[4]: Nothing to be done for `install-exec-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making install in src/mpi/romio make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' mkdir -p '/home/fbrarda/petsc/arch-opt/include' /usr/bin/install -c -m 644 include/mpio.h include/mpiof.h '/home/fbrarda/petsc/arch-opt/include' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making install in src/pm/hydra make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making install in mpl make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making install in tools/topo/hwloc/hwloc make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in include make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Nothing to be done for `install-exec-am'. make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making install in hwloc make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' /usr/bin/make install-exec-hook make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[6]: Nothing to be done for `install-exec-hook'. make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Nothing to be done for `install-exec-am'. make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in . make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' mkdir -p '/home/fbrarda/petsc/arch-opt/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra '/home/fbrarda/petsc/arch-opt/bin' libtool: install: /usr/bin/install -c hydra_persist /home/fbrarda/petsc/arch-opt/bin/hydra_persist libtool: install: /usr/bin/install -c hydra_nameserver /home/fbrarda/petsc/arch-opt/bin/hydra_nameserver libtool: install: /usr/bin/install -c hydra_pmi_proxy /home/fbrarda/petsc/arch-opt/bin/hydra_pmi_proxy libtool: install: /usr/bin/install -c mpiexec.hydra /home/fbrarda/petsc/arch-opt/bin/mpiexec.hydra /usr/bin/make install-exec-hook make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' if [ -x /home/fbrarda/petsc/arch-opt/bin/mpiexec.hydra ] ; then \ cd /home/fbrarda/petsc/arch-opt/bin && ln -f -s mpiexec.hydra mpiexec ; \ cd /home/fbrarda/petsc/arch-opt/bin && ln -f -s mpiexec.hydra mpirun ; \ fi make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making install in . make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' mkdir -p '/home/fbrarda/petsc/arch-opt/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la '/home/fbrarda/petsc/arch-opt/lib' libtool: install: /usr/bin/install -c lib/.libs/libmpi.so.12.1.8 /home/fbrarda/petsc/arch-opt/lib/libmpi.so.12.1.8 libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpi.so.12.1.8 libmpi.so.12 || { rm -f libmpi.so.12 && ln -s libmpi.so.12.1.8 libmpi.so.12; }; }) libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpi.so.12.1.8 libmpi.so || { rm -f libmpi.so && ln -s libmpi.so.12.1.8 libmpi.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpi.lai /home/fbrarda/petsc/arch-opt/lib/libmpi.la libtool: install: (cd /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2; /bin/bash "/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/libtool" --silent --tag FC --mode=relink gfortran -Isrc/binding/fortran/use_mpi -fPIC -ffree-line-length-0 -g -O -O2 -version-info 13:8:1 -o lib/libmpifort.la -rpath /home/fbrarda/petsc/arch-opt/lib src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-exscanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-reducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-op_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-op_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allreducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-redscatf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_rankf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grouptranksf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_comparef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_unionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-groupinterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-groupdifff.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_inclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_exclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grouprinclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grouprexclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_rankf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_comparef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dup_with_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_splitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commtesticf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commrsizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commrgroupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iccreatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-icmergef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-attr_putf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-attr_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-attr_deletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-topo_testf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dims_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-graph_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-graphdims_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-graph_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cartdim_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_rankf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_coordsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbcountf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbrsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_shiftf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_subf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_mapf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-graph_mapf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-getpnamef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_versionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_library_versionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-errhcreatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-errhsetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-errhgetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-errhfreef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-error_stringf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-error_classf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-finalizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initializedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-abortf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-close_portf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_acceptf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_connectf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commdiscf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commparentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_joinf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_spawnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-spawnmultf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-lookup_namef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-open_portf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-publish_namef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-unpubnamef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-accumulatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-putf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_completef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_fencef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_lockf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_postf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_startf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_testf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlockf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_waitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocate_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_shared_queryf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_create_dynamicf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_attachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_detachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_accumulatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-fetch_and_opf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-compare_and_swapf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rputf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rgetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-raccumulatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rget_accumulatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_lock_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlock_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_flushf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_localf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_local_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_syncf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-adderrclassf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-adderrcodef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-adderrstringf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commcallerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commnewkeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commdelattrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commfreekeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_attrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commgetnamf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_attrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_namef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-filecallerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-greqcompletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-greqstartf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-isthrmainf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-query_threadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-statgetclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-statsetelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typenewkeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typedelattrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_dupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typefreekeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_attrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typegetcntsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typegetenvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typegnamef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typesetattrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typesetnamef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_match_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wincallerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-winnewkeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-windelattrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-winfreekeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_attrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_namef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_attrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_namef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alloc_memf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commcreerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commgeterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commseterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-filecreerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-filegeterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-fileseterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-finalizedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-free_memf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_deletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_dupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-infognkf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-infognthkf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-infovallenf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_setf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pack_externalf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-packesizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-reqgetstatf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typedarrayf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typechindf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typechvecf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecindbf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_create_hindexed_blockf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecresizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecstructf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecsubarrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typegetextentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typegtextf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-unpackextf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wincreerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wingeterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-winseterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_localf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-op_commutativef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_scatter_blockf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_create_adjacentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighbors_countf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighborsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-improbef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-imrecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-mprobef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-mrecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_idupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ibarrierf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ibcastf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-igatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-igathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iscatterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iscattervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iallgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iallgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ireducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iallreducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatter_blockf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iscanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iexscanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_split_typef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_elements_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-status_set_elements_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_extent_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_true_extent_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_size_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_create_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_ackf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_get_ackedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_revokef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_shrinkf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_agreef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_openf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_closef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-aint_addf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-aint_difff.lo src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_base.lo lib/libmpi.la ) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.so.12.1.8T /home/fbrarda/petsc/arch-opt/lib/libmpifort.so.12.1.8 libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpifort.so.12.1.8 libmpifort.so.12 || { rm -f libmpifort.so.12 && ln -s libmpifort.so.12.1.8 libmpifort.so.12; }; }) libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpifort.so.12.1.8 libmpifort.so || { rm -f libmpifort.so && ln -s libmpifort.so.12.1.8 libmpifort.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.lai /home/fbrarda/petsc/arch-opt/lib/libmpifort.la libtool: install: (cd /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2; /bin/bash "/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/libtool" --silent --tag CXX --mode=relink g++ -fstack-protector -g -O -fPIC -std=gnu++14 -O2 -version-info 13:8:1 -o lib/libmpicxx.la -rpath /home/fbrarda/petsc/arch-opt/lib src/binding/cxx/initcxx.lo lib/libmpi.la ) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.so.12.1.8T /home/fbrarda/petsc/arch-opt/lib/libmpicxx.so.12.1.8 libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpicxx.so.12.1.8 libmpicxx.so.12 || { rm -f libmpicxx.so.12 && ln -s libmpicxx.so.12.1.8 libmpicxx.so.12; }; }) libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpicxx.so.12.1.8 libmpicxx.so || { rm -f libmpicxx.so && ln -s libmpicxx.so.12.1.8 libmpicxx.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.lai /home/fbrarda/petsc/arch-opt/lib/libmpicxx.la libtool: install: /usr/bin/install -c lib/.libs/libmpi.a /home/fbrarda/petsc/arch-opt/lib/libmpi.a libtool: install: chmod 644 /home/fbrarda/petsc/arch-opt/lib/libmpi.a libtool: install: ranlib /home/fbrarda/petsc/arch-opt/lib/libmpi.a libtool: install: /usr/bin/install -c lib/.libs/libmpifort.a /home/fbrarda/petsc/arch-opt/lib/libmpifort.a libtool: install: chmod 644 /home/fbrarda/petsc/arch-opt/lib/libmpifort.a libtool: install: ranlib /home/fbrarda/petsc/arch-opt/lib/libmpifort.a libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.a /home/fbrarda/petsc/arch-opt/lib/libmpicxx.a libtool: install: chmod 644 /home/fbrarda/petsc/arch-opt/lib/libmpicxx.a libtool: install: ranlib /home/fbrarda/petsc/arch-opt/lib/libmpicxx.a libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/bin/anaconda2/bin:/opt/slurm/14.11.3/bin:/sbin" ldconfig -n /home/fbrarda/petsc/arch-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/fbrarda/petsc/arch-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- mkdir -p '/home/fbrarda/petsc/arch-opt/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c src/env/mpichversion src/env/mpivars '/home/fbrarda/petsc/arch-opt/bin' libtool: install: /usr/bin/install -c src/env/.libs/mpichversion /home/fbrarda/petsc/arch-opt/bin/mpichversion libtool: install: /usr/bin/install -c src/env/.libs/mpivars /home/fbrarda/petsc/arch-opt/bin/mpivars mkdir -p '/home/fbrarda/petsc/arch-opt/bin' /usr/bin/install -c src/env/mpicc src/env/parkill src/env/mpifort src/env/mpicxx '/home/fbrarda/petsc/arch-opt/bin' /usr/bin/make install-exec-hook make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' for e in /home/fbrarda/petsc/arch-opt/bin/mpicc /home/fbrarda/petsc/arch-opt/bin/mpicxx \ /home/fbrarda/petsc/arch-opt/bin/mpif77 /home/fbrarda/petsc/arch-opt/bin/mpifort ; do \ if test -e ${e} ; then \ sed -e 's|__PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/fbrarda/petsc/arch-opt|g' \ -e 's|__EXEC_PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/fbrarda/petsc/arch-opt|g' \ -e 's|__SYSCONFDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/fbrarda/petsc/arch-opt/etc|g' \ -e 's|__INCLUDEDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/fbrarda/petsc/arch-opt/include|g' \ -e 's|__LIBDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/fbrarda/petsc/arch-opt/lib|g' ${e} > ${e}.tmp ; \ /usr/bin/install -c ${e}.tmp ${e} ; \ rm -f ${e}.tmp ; \ fi ; \ done ; \ if test -e /home/fbrarda/petsc/arch-opt/bin/mpicxx ; then \ if test "mpicxx" != "mpic++" ; then \ cd /home/fbrarda/petsc/arch-opt/bin && ln -f -s mpicxx mpic++ ; \ fi ; \ fi ; \ if test -e /home/fbrarda/petsc/arch-opt/bin/mpifort ; then \ if test "mpifort" != "mpif90" ; then \ cd /home/fbrarda/petsc/arch-opt/bin && ln -f -s mpifort mpif90 ; \ fi ; \ fi ; \ if test -e /home/fbrarda/petsc/arch-opt/bin/mpifort -a ! -e /home/fbrarda/petsc/arch-opt/bin/mpif77 ; then \ if test "mpifort" != "mpif77" ; then \ cd /home/fbrarda/petsc/arch-opt/bin && ln -f -s mpifort mpif77 ; \ fi ; \ fi ; \ if test -e /home/fbrarda/petsc/arch-opt/lib/libmpi.so ; then \ if test "mpi" != "mpl" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpi.so libmpl.so ; \ fi ; \ if test "mpi" != "opa" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpi.so libopa.so ; \ fi ; \ if test "mpi" != "mpich" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpi.so libmpich.so ; \ fi ; \ fi ; \ if test -e /home/fbrarda/petsc/arch-opt/lib/libmpifort.so ; then \ if test "mpifort" != "fmpich" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpifort.so libfmpich.so ; \ fi ; \ if test "mpifort" != "mpichf90" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpifort.so libmpichf90.so ; \ fi ; \ fi ; \ if test -e /home/fbrarda/petsc/arch-opt/lib/libmpicxx.so ; then \ if test "mpicxx" != "mpichcxx" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpicxx.so libmpichcxx.so ; \ fi ; \ fi make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' /usr/bin/install -c -m 644 hydra_nameserver.1 /home/fbrarda/petsc/arch-opt/share/man/man1/hydra_nameserver.1 /usr/bin/install -c -m 644 hydra_persist.1 /home/fbrarda/petsc/arch-opt/share/man/man1/hydra_persist.1 /usr/bin/install -c -m 644 hydra_pmi_proxy.1 /home/fbrarda/petsc/arch-opt/share/man/man1/hydra_pmi_proxy.1 /usr/bin/install -c -m 644 mpicc.1 /home/fbrarda/petsc/arch-opt/share/man/man1/mpicc.1 /usr/bin/install -c -m 644 mpicxx.1 /home/fbrarda/petsc/arch-opt/share/man/man1/mpicxx.1 /usr/bin/install -c -m 644 mpiexec.1 /home/fbrarda/petsc/arch-opt/share/man/man1/mpiexec.1 /usr/bin/install -c -m 644 mpif77.1 /home/fbrarda/petsc/arch-opt/share/man/man1/mpif77.1 /usr/bin/install -c -m 644 mpifort.1 /home/fbrarda/petsc/arch-opt/share/man/man1/mpifort.1 /usr/bin/install -c -m 644 Constants.3 /home/fbrarda/petsc/arch-opt/share/man/man3/Constants.3 /usr/bin/install -c -m 644 MPI_Abort.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Abort.3 /usr/bin/install -c -m 644 MPI_Accumulate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Accumulate.3 /usr/bin/install -c -m 644 MPI_Add_error_class.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Add_error_class.3 /usr/bin/install -c -m 644 MPI_Add_error_code.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Add_error_code.3 /usr/bin/install -c -m 644 MPI_Add_error_string.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Add_error_string.3 /usr/bin/install -c -m 644 MPI_Address.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Address.3 /usr/bin/install -c -m 644 MPI_Aint_add.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Aint_add.3 /usr/bin/install -c -m 644 MPI_Aint_diff.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Aint_diff.3 /usr/bin/install -c -m 644 MPI_Allgather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Allgather.3 /usr/bin/install -c -m 644 MPI_Allgatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Allgatherv.3 /usr/bin/install -c -m 644 MPI_Alloc_mem.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Alloc_mem.3 /usr/bin/install -c -m 644 MPI_Allreduce.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Allreduce.3 /usr/bin/install -c -m 644 MPI_Alltoall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Alltoall.3 /usr/bin/install -c -m 644 MPI_Alltoallv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Alltoallv.3 /usr/bin/install -c -m 644 MPI_Alltoallw.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Alltoallw.3 /usr/bin/install -c -m 644 MPI_Attr_delete.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Attr_delete.3 /usr/bin/install -c -m 644 MPI_Attr_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Attr_get.3 /usr/bin/install -c -m 644 MPI_Attr_put.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Attr_put.3 /usr/bin/install -c -m 644 MPI_Barrier.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Barrier.3 /usr/bin/install -c -m 644 MPI_Bcast.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Bcast.3 /usr/bin/install -c -m 644 MPI_Bsend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Bsend.3 /usr/bin/install -c -m 644 MPI_Bsend_init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Bsend_init.3 /usr/bin/install -c -m 644 MPI_Buffer_attach.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Buffer_attach.3 /usr/bin/install -c -m 644 MPI_Buffer_detach.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Buffer_detach.3 /usr/bin/install -c -m 644 MPI_Cancel.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cancel.3 /usr/bin/install -c -m 644 MPI_Cart_coords.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_coords.3 /usr/bin/install -c -m 644 MPI_Cart_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_create.3 /usr/bin/install -c -m 644 MPI_Cartdim_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cartdim_get.3 /usr/bin/install -c -m 644 MPI_Cart_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_get.3 /usr/bin/install -c -m 644 MPI_Cart_map.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_map.3 /usr/bin/install -c -m 644 MPI_Cart_rank.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_rank.3 /usr/bin/install -c -m 644 MPI_Cart_shift.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_shift.3 /usr/bin/install -c -m 644 MPI_Cart_sub.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_sub.3 /usr/bin/install -c -m 644 MPI_Close_port.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Close_port.3 /usr/bin/install -c -m 644 MPI_Comm_accept.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_accept.3 /usr/bin/install -c -m 644 MPI_Comm_call_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_compare.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_compare.3 /usr/bin/install -c -m 644 MPI_Comm_connect.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_connect.3 /usr/bin/install -c -m 644 MPI_Comm_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_create.3 /usr/bin/install -c -m 644 MPI_Comm_create_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_create_group.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_create_group.3 /usr/bin/install -c -m 644 MPI_Comm_create_keyval.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_create_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_delete_attr.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_delete_attr.3 /usr/bin/install -c -m 644 MPI_Comm_disconnect.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_disconnect.3 /usr/bin/install -c -m 644 MPI_Comm_dup.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_dup.3 /usr/bin/install -c -m 644 MPI_Comm_dup_with_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_dup_with_info.3 /usr/bin/install -c -m 644 MPI_Comm_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_free.3 /usr/bin/install -c -m 644 MPI_Comm_free_keyval.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_free_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_get_attr.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_get_attr.3 /usr/bin/install -c -m 644 MPI_Comm_get_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_get_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_get_info.3 /usr/bin/install -c -m 644 MPI_Comm_get_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_get_name.3 /usr/bin/install -c -m 644 MPI_Comm_get_parent.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_get_parent.3 /usr/bin/install -c -m 644 MPI_Comm_group.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_group.3 /usr/bin/install -c -m 644 MPI_Comm_idup.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_idup.3 /usr/bin/install -c -m 644 MPI_Comm_join.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_join.3 /usr/bin/install -c -m 644 MPI_Comm_rank.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_rank.3 /usr/bin/install -c -m 644 MPI_Comm_remote_group.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_remote_group.3 /usr/bin/install -c -m 644 MPI_Comm_remote_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_remote_size.3 /usr/bin/install -c -m 644 MPI_Comm_set_attr.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_set_attr.3 /usr/bin/install -c -m 644 MPI_Comm_set_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_set_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_set_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_set_info.3 /usr/bin/install -c -m 644 MPI_Comm_set_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_set_name.3 /usr/bin/install -c -m 644 MPI_Comm_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_size.3 /usr/bin/install -c -m 644 MPI_Comm_spawn.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_spawn.3 /usr/bin/install -c -m 644 MPI_Comm_spawn_multiple.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_spawn_multiple.3 /usr/bin/install -c -m 644 MPI_Comm_split.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_split.3 /usr/bin/install -c -m 644 MPI_Comm_split_type.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_split_type.3 /usr/bin/install -c -m 644 MPI_Comm_test_inter.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_test_inter.3 /usr/bin/install -c -m 644 MPI_Compare_and_swap.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Compare_and_swap.3 /usr/bin/install -c -m 644 MPI_Dims_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Dims_create.3 /usr/bin/install -c -m 644 MPI_Dist_graph_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Dist_graph_create.3 /usr/bin/install -c -m 644 MPI_Dist_graph_create_adjacent.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Dist_graph_create_adjacent.3 /usr/bin/install -c -m 644 MPI_Dist_graph_neighbors.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Dist_graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Dist_graph_neighbors_count.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Dist_graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Errhandler_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Errhandler_create.3 /usr/bin/install -c -m 644 MPI_Errhandler_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Errhandler_free.3 /usr/bin/install -c -m 644 MPI_Errhandler_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Errhandler_get.3 /usr/bin/install -c -m 644 MPI_Errhandler_set.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Errhandler_set.3 /usr/bin/install -c -m 644 MPI_Error_class.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Error_class.3 /usr/bin/install -c -m 644 MPI_Error_string.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Error_string.3 /usr/bin/install -c -m 644 MPI_Exscan.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Exscan.3 /usr/bin/install -c -m 644 MPI_Fetch_and_op.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Fetch_and_op.3 /usr/bin/install -c -m 644 MPI_File_c2f.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_c2f.3 /usr/bin/install -c -m 644 MPI_File_call_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_call_errhandler.3 /usr/bin/install -c -m 644 MPI_File_close.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_close.3 /usr/bin/install -c -m 644 MPI_File_create_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_create_errhandler.3 /usr/bin/install -c -m 644 MPI_File_delete.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_delete.3 /usr/bin/install -c -m 644 MPI_File_f2c.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_f2c.3 /usr/bin/install -c -m 644 MPI_File_get_amode.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_amode.3 /usr/bin/install -c -m 644 MPI_File_get_atomicity.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_atomicity.3 /usr/bin/install -c -m 644 MPI_File_get_byte_offset.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_byte_offset.3 /usr/bin/install -c -m 644 MPI_File_get_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_errhandler.3 /usr/bin/install -c -m 644 MPI_File_get_group.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_group.3 /usr/bin/install -c -m 644 MPI_File_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_info.3 /usr/bin/install -c -m 644 MPI_File_get_position.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_position.3 /usr/bin/install -c -m 644 MPI_File_get_position_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_position_shared.3 /usr/bin/install -c -m 644 MPI_File_get_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_size.3 /usr/bin/install -c -m 644 MPI_File_get_type_extent.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_type_extent.3 /usr/bin/install -c -m 644 MPI_File_get_view.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_view.3 /usr/bin/install -c -m 644 MPI_File_iread.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iread.3 /usr/bin/install -c -m 644 MPI_File_iread_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iread_all.3 /usr/bin/install -c -m 644 MPI_File_iread_at.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iread_at.3 /usr/bin/install -c -m 644 MPI_File_iread_at_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iread_at_all.3 /usr/bin/install -c -m 644 MPI_File_iread_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iread_shared.3 /usr/bin/install -c -m 644 MPI_File_iwrite.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iwrite.3 /usr/bin/install -c -m 644 MPI_File_iwrite_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iwrite_all.3 /usr/bin/install -c -m 644 MPI_File_iwrite_at.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iwrite_at.3 /usr/bin/install -c -m 644 MPI_File_iwrite_at_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iwrite_at_all.3 /usr/bin/install -c -m 644 MPI_File_iwrite_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iwrite_shared.3 /usr/bin/install -c -m 644 MPI_File_open.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_open.3 /usr/bin/install -c -m 644 MPI_File_preallocate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_preallocate.3 /usr/bin/install -c -m 644 MPI_File_read.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read.3 /usr/bin/install -c -m 644 MPI_File_read_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_all.3 /usr/bin/install -c -m 644 MPI_File_read_all_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_all_begin.3 /usr/bin/install -c -m 644 MPI_File_read_all_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_all_end.3 /usr/bin/install -c -m 644 MPI_File_read_at.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_at.3 /usr/bin/install -c -m 644 MPI_File_read_at_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_at_all.3 /usr/bin/install -c -m 644 MPI_File_read_at_all_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_read_at_all_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_read_ordered.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_ordered.3 /usr/bin/install -c -m 644 MPI_File_read_ordered_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_ordered_begin.3 /usr/bin/install -c -m 644 MPI_File_read_ordered_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_ordered_end.3 /usr/bin/install -c -m 644 MPI_File_read_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_shared.3 /usr/bin/install -c -m 644 MPI_File_seek.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_seek.3 /usr/bin/install -c -m 644 MPI_File_seek_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_seek_shared.3 /usr/bin/install -c -m 644 MPI_File_set_atomicity.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_set_atomicity.3 /usr/bin/install -c -m 644 MPI_File_set_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_set_errhandler.3 /usr/bin/install -c -m 644 MPI_File_set_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_set_info.3 /usr/bin/install -c -m 644 MPI_File_set_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_set_size.3 /usr/bin/install -c -m 644 MPI_File_set_view.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_set_view.3 /usr/bin/install -c -m 644 MPI_File_sync.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_sync.3 /usr/bin/install -c -m 644 MPI_File_write.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write.3 /usr/bin/install -c -m 644 MPI_File_write_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_all.3 /usr/bin/install -c -m 644 MPI_File_write_all_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_all_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_at.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_at.3 /usr/bin/install -c -m 644 MPI_File_write_at_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_at_all.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_ordered.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_ordered.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_ordered_begin.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_ordered_end.3 /usr/bin/install -c -m 644 MPI_File_write_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_shared.3 /usr/bin/install -c -m 644 MPI_Finalize.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Finalize.3 /usr/bin/install -c -m 644 MPI_Finalized.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Finalized.3 /usr/bin/install -c -m 644 MPI_Free_mem.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Free_mem.3 /usr/bin/install -c -m 644 MPI_Gather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Gather.3 /usr/bin/install -c -m 644 MPI_Gatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Gatherv.3 /usr/bin/install -c -m 644 MPI_Get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get.3 /usr/bin/install -c -m 644 MPI_Get_accumulate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_accumulate.3 /usr/bin/install -c -m 644 MPI_Get_address.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_address.3 /usr/bin/install -c -m 644 MPI_Get_count.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_count.3 /usr/bin/install -c -m 644 MPI_Get_elements.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_elements.3 /usr/bin/install -c -m 644 MPI_Get_elements_x.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_elements_x.3 /usr/bin/install -c -m 644 MPI_Get_library_version.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_library_version.3 /usr/bin/install -c -m 644 MPI_Get_processor_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_processor_name.3 /usr/bin/install -c -m 644 MPI_Get_version.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_version.3 /usr/bin/install -c -m 644 MPI_Graph_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graph_create.3 /usr/bin/install -c -m 644 MPI_Graphdims_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graphdims_get.3 /usr/bin/install -c -m 644 MPI_Graph_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graph_get.3 /usr/bin/install -c -m 644 MPI_Graph_map.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graph_map.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors_count.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Grequest_complete.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Grequest_complete.3 /usr/bin/install -c -m 644 MPI_Grequest_start.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Grequest_start.3 /usr/bin/install -c -m 644 MPI_Group_compare.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_compare.3 /usr/bin/install -c -m 644 MPI_Group_difference.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_difference.3 /usr/bin/install -c -m 644 MPI_Group_excl.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_excl.3 /usr/bin/install -c -m 644 MPI_Group_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_free.3 /usr/bin/install -c -m 644 MPI_Group_incl.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_incl.3 /usr/bin/install -c -m 644 MPI_Group_intersection.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_intersection.3 /usr/bin/install -c -m 644 MPI_Group_range_excl.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_range_excl.3 /usr/bin/install -c -m 644 MPI_Group_range_incl.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_range_incl.3 /usr/bin/install -c -m 644 MPI_Group_rank.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_rank.3 /usr/bin/install -c -m 644 MPI_Group_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_size.3 /usr/bin/install -c -m 644 MPI_Group_translate_ranks.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_translate_ranks.3 /usr/bin/install -c -m 644 MPI_Group_union.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_union.3 /usr/bin/install -c -m 644 MPI_Iallgather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iallgather.3 /usr/bin/install -c -m 644 MPI_Iallgatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iallgatherv.3 /usr/bin/install -c -m 644 MPI_Iallreduce.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iallreduce.3 /usr/bin/install -c -m 644 MPI_Ialltoall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ialltoall.3 /usr/bin/install -c -m 644 MPI_Ialltoallv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ialltoallv.3 /usr/bin/install -c -m 644 MPI_Ialltoallw.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ialltoallw.3 /usr/bin/install -c -m 644 MPI_Ibarrier.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ibarrier.3 /usr/bin/install -c -m 644 MPI_Ibcast.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ibcast.3 /usr/bin/install -c -m 644 MPI_Ibsend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ibsend.3 /usr/bin/install -c -m 644 MPI_Iexscan.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iexscan.3 /usr/bin/install -c -m 644 MPI_Igather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Igather.3 /usr/bin/install -c -m 644 MPI_Igatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Igatherv.3 /usr/bin/install -c -m 644 MPI_Improbe.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Improbe.3 /usr/bin/install -c -m 644 MPI_Imrecv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Imrecv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ineighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ineighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ineighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ineighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallw.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ineighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Info_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_create.3 /usr/bin/install -c -m 644 MPI_Info_delete.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_delete.3 /usr/bin/install -c -m 644 MPI_Info_dup.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_dup.3 /usr/bin/install -c -m 644 MPI_Info_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_free.3 /usr/bin/install -c -m 644 MPI_Info_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_get.3 /usr/bin/install -c -m 644 MPI_Info_get_nkeys.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_get_nkeys.3 /usr/bin/install -c -m 644 MPI_Info_get_nthkey.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_get_nthkey.3 /usr/bin/install -c -m 644 MPI_Info_get_valuelen.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_get_valuelen.3 /usr/bin/install -c -m 644 MPI_Info_set.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_set.3 /usr/bin/install -c -m 644 MPI_Init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Init.3 /usr/bin/install -c -m 644 MPI_Initialized.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Initialized.3 /usr/bin/install -c -m 644 MPI_Init_thread.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Init_thread.3 /usr/bin/install -c -m 644 MPI_Intercomm_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Intercomm_create.3 /usr/bin/install -c -m 644 MPI_Intercomm_merge.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Intercomm_merge.3 /usr/bin/install -c -m 644 MPI_Iprobe.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iprobe.3 /usr/bin/install -c -m 644 MPI_Irecv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Irecv.3 /usr/bin/install -c -m 644 MPI_Ireduce.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ireduce.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ireduce_scatter.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter_block.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ireduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Irsend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Irsend.3 /usr/bin/install -c -m 644 MPI_Iscan.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iscan.3 /usr/bin/install -c -m 644 MPI_Iscatter.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iscatter.3 /usr/bin/install -c -m 644 MPI_Iscatterv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iscatterv.3 /usr/bin/install -c -m 644 MPI_Isend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Isend.3 /usr/bin/install -c -m 644 MPI_Issend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Issend.3 /usr/bin/install -c -m 644 MPI_Is_thread_main.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Is_thread_main.3 /usr/bin/install -c -m 644 MPI_Keyval_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Keyval_create.3 /usr/bin/install -c -m 644 MPI_Keyval_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Keyval_free.3 /usr/bin/install -c -m 644 MPI_Lookup_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Lookup_name.3 /usr/bin/install -c -m 644 MPI_Mprobe.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Mprobe.3 /usr/bin/install -c -m 644 MPI_Mrecv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Mrecv.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Neighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Neighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Neighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Neighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallw.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Neighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Op_commute.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Op_commute.3 /usr/bin/install -c -m 644 MPI_Op_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Op_create.3 /usr/bin/install -c -m 644 MPI_Open_port.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Open_port.3 /usr/bin/install -c -m 644 MPI_Op_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Op_free.3 /usr/bin/install -c -m 644 MPI_Pack.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Pack.3 /usr/bin/install -c -m 644 MPI_Pack_external.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Pack_external.3 /usr/bin/install -c -m 644 MPI_Pack_external_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Pack_external_size.3 /usr/bin/install -c -m 644 MPI_Pack_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Pack_size.3 /usr/bin/install -c -m 644 MPI_Pcontrol.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Pcontrol.3 /usr/bin/install -c -m 644 MPI_Probe.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Probe.3 /usr/bin/install -c -m 644 MPI_Publish_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Publish_name.3 /usr/bin/install -c -m 644 MPI_Put.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Put.3 /usr/bin/install -c -m 644 MPI_Query_thread.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Query_thread.3 /usr/bin/install -c -m 644 MPI_Raccumulate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Raccumulate.3 /usr/bin/install -c -m 644 MPI_Recv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Recv.3 /usr/bin/install -c -m 644 MPI_Recv_init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Recv_init.3 /usr/bin/install -c -m 644 MPI_Reduce.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Reduce.3 /usr/bin/install -c -m 644 MPI_Reduce_local.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Reduce_local.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Reduce_scatter.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter_block.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Reduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Register_datarep.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Register_datarep.3 /usr/bin/install -c -m 644 MPI_Request_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Request_free.3 /usr/bin/install -c -m 644 MPI_Request_get_status.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Request_get_status.3 /usr/bin/install -c -m 644 MPI_Rget.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Rget.3 /usr/bin/install -c -m 644 MPI_Rget_accumulate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Rget_accumulate.3 /usr/bin/install -c -m 644 MPI_Rput.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Rput.3 /usr/bin/install -c -m 644 MPI_Rsend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Rsend.3 /usr/bin/install -c -m 644 MPI_Rsend_init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Rsend_init.3 /usr/bin/install -c -m 644 MPIR_Type_commit.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_commit.3 /usr/bin/install -c -m 644 MPIR_Type_contiguous.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_contiguous.3 /usr/bin/install -c -m 644 MPIR_Type_dup.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_dup.3 /usr/bin/install -c -m 644 MPIR_Type_get_contents.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_get_contents.3 /usr/bin/install -c -m 644 MPIR_Type_indexed.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_indexed.3 /usr/bin/install -c -m 644 MPIR_Type_struct.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_struct.3 /usr/bin/install -c -m 644 MPIR_Type_vector.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_vector.3 /usr/bin/install -c -m 644 MPI_Scan.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Scan.3 /usr/bin/install -c -m 644 MPI_Scatter.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Scatter.3 /usr/bin/install -c -m 644 MPI_Scatterv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Scatterv.3 /usr/bin/install -c -m 644 MPI_Send.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Send.3 /usr/bin/install -c -m 644 MPI_Send_init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Send_init.3 /usr/bin/install -c -m 644 MPI_Sendrecv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Sendrecv.3 /usr/bin/install -c -m 644 MPI_Sendrecv_replace.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Sendrecv_replace.3 /usr/bin/install -c -m 644 MPI_Ssend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ssend.3 /usr/bin/install -c -m 644 MPI_Ssend_init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ssend_init.3 /usr/bin/install -c -m 644 MPI_Start.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Start.3 /usr/bin/install -c -m 644 MPI_Startall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Startall.3 /usr/bin/install -c -m 644 MPI_Status_set_cancelled.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Status_set_cancelled.3 /usr/bin/install -c -m 644 MPI_Status_set_elements.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Status_set_elements.3 /usr/bin/install -c -m 644 MPI_Status_set_elements_x.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Status_set_elements_x.3 /usr/bin/install -c -m 644 MPI_T_category_changed.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_changed.3 /usr/bin/install -c -m 644 MPI_T_category_get_categories.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_categories.3 /usr/bin/install -c -m 644 MPI_T_category_get_cvars.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_cvars.3 /usr/bin/install -c -m 644 MPI_T_category_get_index.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_index.3 /usr/bin/install -c -m 644 MPI_T_category_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_info.3 /usr/bin/install -c -m 644 MPI_T_category_get_num.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_num.3 /usr/bin/install -c -m 644 MPI_T_category_get_pvars.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_pvars.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_index.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_get_index.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_num.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_alloc.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_cvar_read.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_read.3 /usr/bin/install -c -m 644 MPI_T_cvar_write.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_write.3 /usr/bin/install -c -m 644 MPI_T_enum_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_enum_get_info.3 /usr/bin/install -c -m 644 MPI_T_enum_get_item.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_enum_get_item.3 /usr/bin/install -c -m 644 MPI_Test.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Test.3 /usr/bin/install -c -m 644 MPI_Testall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Testall.3 /usr/bin/install -c -m 644 MPI_Testany.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Testany.3 /usr/bin/install -c -m 644 MPI_Test_cancelled.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Test_cancelled.3 /usr/bin/install -c -m 644 MPI_Testsome.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Testsome.3 /usr/bin/install -c -m 644 MPI_T_finalize.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_finalize.3 /usr/bin/install -c -m 644 MPI_T_init_thread.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_init_thread.3 /usr/bin/install -c -m 644 MPI_Topo_test.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Topo_test.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_index.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_get_index.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_num.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_alloc.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_pvar_read.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_read.3 /usr/bin/install -c -m 644 MPI_T_pvar_readreset.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_readreset.3 /usr/bin/install -c -m 644 MPI_T_pvar_reset.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_reset.3 /usr/bin/install -c -m 644 MPI_T_pvar_session_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_session_create.3 /usr/bin/install -c -m 644 MPI_T_pvar_session_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_session_free.3 /usr/bin/install -c -m 644 MPI_T_pvar_start.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_start.3 /usr/bin/install -c -m 644 MPI_T_pvar_stop.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_stop.3 /usr/bin/install -c -m 644 MPI_T_pvar_write.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_write.3 /usr/bin/install -c -m 644 MPI_Type_commit.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_commit.3 /usr/bin/install -c -m 644 MPI_Type_contiguous.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_contiguous.3 /usr/bin/install -c -m 644 MPI_Type_create_darray.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_create_darray.3 /usr/bin/install -c -m 644 MPI_Type_create_hindexed.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_create_hindexed.3 /usr/bin/install -c -m 644 MPI_Type_create_hindexed_block.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_create_hindexed_block.3 /usr/bin/install -c -m 644 MPI_Type_create_hvector.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_create_hvector.3 /usr/bin/install -c -m 644 MPI_Type_create_indexed_block.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_create_indexed_block.3 /usr/bin/install -c -m 644 MPI_Type_create_keyval.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_create_keyval.3 /usr/bin/install -c -m 644 MPI_Type_create_resized.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_create_resized.3 /usr/bin/install -c -m 644 MPI_Type_create_struct.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_create_struct.3 /usr/bin/install -c -m 644 MPI_Type_create_subarray.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_create_subarray.3 /usr/bin/install -c -m 644 MPI_Type_delete_attr.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_delete_attr.3 /usr/bin/install -c -m 644 MPI_Type_dup.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_dup.3 /usr/bin/install -c -m 644 MPI_Type_extent.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_extent.3 /usr/bin/install -c -m 644 MPI_Type_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_free.3 /usr/bin/install -c -m 644 MPI_Type_free_keyval.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_free_keyval.3 /usr/bin/install -c -m 644 MPI_Type_get_attr.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_get_attr.3 /usr/bin/install -c -m 644 MPI_Type_get_contents.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_get_contents.3 /usr/bin/install -c -m 644 MPI_Type_get_envelope.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_get_envelope.3 /usr/bin/install -c -m 644 MPI_Type_get_extent.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_get_extent.3 /usr/bin/install -c -m 644 MPI_Type_get_extent_x.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_get_extent_x.3 /usr/bin/install -c -m 644 MPI_Type_get_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_get_name.3 /usr/bin/install -c -m 644 MPI_Type_get_true_extent.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_get_true_extent.3 /usr/bin/install -c -m 644 MPI_Type_get_true_extent_x.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_get_true_extent_x.3 /usr/bin/install -c -m 644 MPI_Type_hindexed.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_hindexed.3 /usr/bin/install -c -m 644 MPI_Type_hvector.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_hvector.3 /usr/bin/install -c -m 644 MPI_Type_indexed.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_indexed.3 /usr/bin/install -c -m 644 MPI_Type_lb.3 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/home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Unpack.3 /usr/bin/install -c -m 644 MPI_Unpack_external.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Unpack_external.3 /usr/bin/install -c -m 644 MPI_Unpublish_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Unpublish_name.3 /usr/bin/install -c -m 644 MPI_Wait.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Wait.3 /usr/bin/install -c -m 644 MPI_Waitall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Waitall.3 /usr/bin/install -c -m 644 MPI_Waitany.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Waitany.3 /usr/bin/install -c -m 644 MPI_Waitsome.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Waitsome.3 /usr/bin/install -c -m 644 MPI_Win_allocate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_allocate.3 /usr/bin/install -c -m 644 MPI_Win_allocate_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_allocate_shared.3 /usr/bin/install -c -m 644 MPI_Win_attach.3 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/usr/bin/install -c -m 644 MPI_Win_get_group.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_get_group.3 /usr/bin/install -c -m 644 MPI_Win_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_get_info.3 /usr/bin/install -c -m 644 MPI_Win_get_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_get_name.3 /usr/bin/install -c -m 644 MPI_Win_lock.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_lock.3 /usr/bin/install -c -m 644 MPI_Win_lock_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_lock_all.3 /usr/bin/install -c -m 644 MPI_Win_post.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_post.3 /usr/bin/install -c -m 644 MPI_Win_set_attr.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_set_attr.3 /usr/bin/install -c -m 644 MPI_Win_set_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_set_errhandler.3 /usr/bin/install -c -m 644 MPI_Win_set_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Win_set_info.3 /usr/bin/install -c 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/home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_hvector.html /usr/bin/install -c -m 644 MPI_Type_indexed.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_indexed.html /usr/bin/install -c -m 644 MPI_Type_lb.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_lb.html /usr/bin/install -c -m 644 MPI_Type_match_size.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_match_size.html /usr/bin/install -c -m 644 MPI_TYPE_NULL_COPY_FN.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_TYPE_NULL_COPY_FN.htm /usr/bin/install -c -m 644 MPI_TYPE_NULL_DELETE_FN.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_TYPE_NULL_DELETE_FN.htm /usr/bin/install -c -m 644 MPI_Type_set_attr.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_set_attr.html /usr/bin/install -c -m 644 MPI_Type_set_name.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_set_name.html /usr/bin/install -c -m 644 MPI_Type_size.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_size.html /usr/bin/install -c -m 644 MPI_Type_size_x.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_size_x.html /usr/bin/install -c -m 644 MPI_Type_struct.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_struct.html /usr/bin/install -c -m 644 MPI_Type_ub.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_ub.html /usr/bin/install -c -m 644 MPI_Type_vector.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Type_vector.html /usr/bin/install -c -m 644 MPI_UB.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UB.htm /usr/bin/install -c -m 644 MPI_UINT16_T.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UINT16_T.htm /usr/bin/install -c -m 644 MPI_UINT32_T.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UINT32_T.htm /usr/bin/install -c -m 644 MPI_UINT64_T.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UINT64_T.htm /usr/bin/install -c -m 644 MPI_UINT8_T.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UINT8_T.htm /usr/bin/install -c -m 644 MPI_UNDEFINED.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UNDEFINED.htm /usr/bin/install -c -m 644 MPI_UNDEFINED_RANK.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UNDEFINED_RANK.htm /usr/bin/install -c -m 644 MPI_UNEQUAL.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UNEQUAL.htm /usr/bin/install -c -m 644 MPI_UNIVERSE_SIZE.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UNIVERSE_SIZE.htm /usr/bin/install -c -m 644 MPI_Unpack_external.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Unpack_external.html /usr/bin/install -c -m 644 MPI_Unpack.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Unpack.html /usr/bin/install -c -m 644 MPI_Unpublish_name.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Unpublish_name.html /usr/bin/install -c -m 644 MPI_UNSIGNED_CHAR.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UNSIGNED_CHAR.htm /usr/bin/install -c -m 644 MPI_UNSIGNED.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UNSIGNED.htm /usr/bin/install -c -m 644 MPI_UNSIGNED_LONG.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UNSIGNED_LONG.htm /usr/bin/install -c -m 644 MPI_UNSIGNED_LONG_LONG.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UNSIGNED_LONG_LONG.htm /usr/bin/install -c -m 644 MPI_UNSIGNED_SHORT.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UNSIGNED_SHORT.htm /usr/bin/install -c -m 644 MPI_UNWEIGHTED.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_UNWEIGHTED.htm /usr/bin/install -c -m 644 MPI_User_function.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_User_function.htm /usr/bin/install -c -m 644 MPI_VERSION.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_VERSION.htm /usr/bin/install -c -m 644 MPI_Waitall.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Waitall.html /usr/bin/install -c -m 644 MPI_Waitany.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Waitany.html /usr/bin/install -c -m 644 MPI_Wait.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Wait.html /usr/bin/install -c -m 644 MPI_Waitsome.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Waitsome.html /usr/bin/install -c -m 644 MPI_WCHAR.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WCHAR.htm /usr/bin/install -c -m 644 MPI_WEIGHTS_EMPTY.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WEIGHTS_EMPTY.htm /usr/bin/install -c -m 644 MPI_Win_allocate.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_allocate.html /usr/bin/install -c -m 644 MPI_Win_allocate_shared.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_allocate_shared.html /usr/bin/install -c -m 644 MPI_Win_attach.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_attach.html /usr/bin/install -c -m 644 MPI_WIN_BASE.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_BASE.htm /usr/bin/install -c -m 644 MPI_Win_call_errhandler.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_call_errhandler.html /usr/bin/install -c -m 644 MPI_Win_complete.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_complete.html /usr/bin/install -c -m 644 MPI_Win_create_dynamic.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_create_dynamic.html /usr/bin/install -c -m 644 MPI_Win_create_errhandler.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_create_errhandler.html /usr/bin/install -c -m 644 MPI_WIN_CREATE_FLAVOR.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_CREATE_FLAVOR.htm /usr/bin/install -c -m 644 MPI_Win_create.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_create.html /usr/bin/install -c -m 644 MPI_Win_create_keyval.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_create_keyval.html /usr/bin/install -c -m 644 MPI_Win_delete_attr.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_delete_attr.html /usr/bin/install -c -m 644 MPI_Win_detach.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_detach.html /usr/bin/install -c -m 644 MPI_WIN_DISP_UNIT.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_DISP_UNIT.htm /usr/bin/install -c -m 644 MPI_WIN_DUP_FN.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_DUP_FN.htm /usr/bin/install -c -m 644 MPI_Win_fence.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_fence.html /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_ALLOCATE.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_ALLOCATE.htm /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_CREATE.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_CREATE.htm /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_DYNAMIC.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_DYNAMIC.htm /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_SHARED.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_SHARED.htm /usr/bin/install -c -m 644 MPI_Win_flush_all.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_flush_all.html /usr/bin/install -c -m 644 MPI_Win_flush.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_flush.html /usr/bin/install -c -m 644 MPI_Win_flush_local_all.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_flush_local_all.html /usr/bin/install -c -m 644 MPI_Win_flush_local.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_flush_local.html /usr/bin/install -c -m 644 MPI_Win_free.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_free.html /usr/bin/install -c -m 644 MPI_Win_free_keyval.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_free_keyval.html /usr/bin/install -c -m 644 MPI_Win_get_attr.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_get_attr.html /usr/bin/install -c -m 644 MPI_Win_get_errhandler.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_get_errhandler.html /usr/bin/install -c -m 644 MPI_Win_get_group.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_get_group.html /usr/bin/install -c -m 644 MPI_Win_get_info.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_get_info.html /usr/bin/install -c -m 644 MPI_Win_get_name.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_get_name.html /usr/bin/install -c -m 644 MPI_Win_lock_all.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_lock_all.html /usr/bin/install -c -m 644 MPI_Win_lock.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_lock.html /usr/bin/install -c -m 644 MPI_WIN_MODEL.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_MODEL.htm /usr/bin/install -c -m 644 MPI_WIN_NULL_COPY_FN.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_NULL_COPY_FN.htm /usr/bin/install -c -m 644 MPI_WIN_NULL_DELETE_FN.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_NULL_DELETE_FN.htm /usr/bin/install -c -m 644 MPI_WIN_NULL.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_NULL.htm /usr/bin/install -c -m 644 MPI_Win_post.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_post.html /usr/bin/install -c -m 644 MPI_WIN_SEPARATE.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_SEPARATE.htm /usr/bin/install -c -m 644 MPI_Win_set_attr.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_set_attr.html /usr/bin/install -c -m 644 MPI_Win_set_errhandler.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_set_errhandler.html /usr/bin/install -c -m 644 MPI_Win_set_info.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_set_info.html /usr/bin/install -c -m 644 MPI_Win_set_name.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_set_name.html /usr/bin/install -c -m 644 MPI_Win_shared_query.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_shared_query.html /usr/bin/install -c -m 644 MPI_WIN_SIZE.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_SIZE.htm /usr/bin/install -c -m 644 MPI_Win_start.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_start.html /usr/bin/install -c -m 644 MPI_Win_sync.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_sync.html /usr/bin/install -c -m 644 MPI_Win_test.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_test.html /usr/bin/install -c -m 644 MPI_WIN_UNIFIED.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_UNIFIED.htm /usr/bin/install -c -m 644 MPI_Win_unlock_all.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_unlock_all.html /usr/bin/install -c -m 644 MPI_Win_unlock.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_unlock.html /usr/bin/install -c -m 644 MPI_Win_wait.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_wait.html /usr/bin/install -c -m 644 MPI_Wtick.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Wtick.html /usr/bin/install -c -m 644 MPI_Wtime.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Wtime.html /usr/bin/install -c -m 644 MPI_WTIME_IS_GLOBAL.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WTIME_IS_GLOBAL.htm /usr/bin/install -c -m 644 MPIX_Comm_agree.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPIX_Comm_agree.html /usr/bin/install -c -m 644 MPIX_Comm_failure_ack.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPIX_Comm_failure_ack.html /usr/bin/install -c -m 644 MPIX_Comm_failure_get_acked.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPIX_Comm_failure_get_acked.html /usr/bin/install -c -m 644 MPIX_Comm_revoke.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPIX_Comm_revoke.html /usr/bin/install -c -m 644 MPIX_Comm_shrink.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPIX_Comm_shrink.html if [ ! -e /home/fbrarda/petsc/arch-opt/share/doc/mpich ] ; then mkdir -p /home/fbrarda/petsc/arch-opt/share/doc/mpich ; fi if [ -s ./doc/userguide/user.pdf ] ; then /usr/bin/install -c -m 644 ./doc/userguide/user.pdf /home/fbrarda/petsc/arch-opt/share/doc/mpich/user.pdf ; fi if [ -s ./doc/installguide/install.pdf ] ; then /usr/bin/install -c -m 644 ./doc/installguide/install.pdf /home/fbrarda/petsc/arch-opt/share/doc/mpich/install.pdf ; fi if [ -s ./doc/logging/logging.pdf ] ; then /usr/bin/install -c -m 644 ./doc/logging/logging.pdf /home/fbrarda/petsc/arch-opt/share/doc/mpich/logging.pdf ; fi mkdir -p '/home/fbrarda/petsc/arch-opt/include' /usr/bin/install -c -m 644 src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod '/home/fbrarda/petsc/arch-opt/include' mkdir -p '/home/fbrarda/petsc/arch-opt/include' /usr/bin/install -c -m 644 src/binding/cxx/mpicxx.h src/binding/fortran/mpif_h/mpif.h src/include/mpi.h '/home/fbrarda/petsc/arch-opt/include' mkdir -p '/home/fbrarda/petsc/arch-opt/lib/pkgconfig' /usr/bin/install -c -m 644 src/packaging/pkgconfig/mpich.pc '/home/fbrarda/petsc/arch-opt/lib/pkgconfig' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' Making install in examples make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' ********Output of running make on MPICH follows ******* Configuring MPICH version 3.3.2 with '--prefix=/home/fbrarda/petsc/arch-opt' 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' Running on system: Linux srvulx13 3.13.0-44-generic #73-Ubuntu SMP Tue Dec 16 00:22:43 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... 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(cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate Parsing Arguments for OFI Netmod checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no configure: RUNNING PREREQ FOR ch3:nemesis configure: ===== configuring src/mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' --disable-versioning --enable-embedded 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14 ' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O ' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O ' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes configure: Timer type selected is CLOCK_GETTIME checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no configure: POSIX will be used for thread package. checking for thread local storage... _Thread_local checking for pthread_mutex_init... yes checking for pthread_mutexattr_setpshared... yes configure: POSIX will be used for interprocess mutex package. checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... no checking for getpid... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking for usleep... (cached) yes checking whether usleep needs a declaration... (cached) no checking for posix_memalign... yes checking for aligned_alloc... yes checking whether aligned_alloc needs a declaration... no checking for backtrace_symbols... yes checking whether backtrace_create_state is declared... no checking whether backtrace_print is declared... no checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking for __attribute__((fallthrough))... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' --disable-versioning --enable-embedded --with-atomic-primitives=auto_allow_emulation 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14 ' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O ' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O ' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with src/openpa configure ===== checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc configure: hwloc srcdir: /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc checking for hwloc version... 2.0.3rc2-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... src/hwloc/ checking for hwloc symbol prefix... hwloc_ checking for gcc option to accept ISO C99... none needed checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking whether to enable symbol visibility... no (disabled) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strcasecmp... yes checking whether strcasecmp is declared... yes checking whether function strcasecmp has a complete prototype... yes checking for strncasecmp... yes checking whether strncasecmp is declared... yes checking whether function strncasecmp has a complete prototype... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for PROCESSOR_NUMBER... no checking for main in -lgdi32... no checking for PostQuitMessage in -luser32... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking whether modff is declared... yes checking for modff in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking whether strtoull is declared... yes checking for ssize_t... yes checking whether snprintf is declared... yes checking whether _strdup is declared... no checking whether _putenv is declared... no checking whether getprogname is declared... no checking whether getexecname is declared... no checking whether GetModuleFileName is declared... no checking for program_invocation_name... yes checking for __progname... yes checking for pthread_t... yes checking whether sched_getcpu is declared... yes checking whether sched_setaffinity is declared... yes checking whether function sched_setaffinity has a complete prototype... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working syscall with 6 parameters... yes checking for lib... no checking for bash... /bin/bash checking for ffs... yes checking whether ffs is declared... yes checking whether function ffs has a complete prototype... yes checking for ffsl... yes checking whether ffsl is declared... yes checking whether function ffsl has a complete prototype... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking libudev.h usability... no checking libudev.h presence... no checking for libudev.h... no checking for PCIACCESS... no checking pciaccess.h usability... no checking pciaccess.h presence... no checking for pciaccess.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking for gethostbyname... yes checking for connect... yes 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(cached) yes checking whether we can use struct ifconf... yes checking whether we can use struct ifreq... yes checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no configure: ===== configuring src/mpi/romio ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O -O2' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by /usr/bin/make... 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(cached) 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking sys/aio.h usability... no checking sys/aio.h presence... no checking for sys/aio.h... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for struct aiocb.aio_fildes... yes checking for struct aiocb.aio_whence... no checking for struct aiocb.aio_handle... no checking for struct aiocb.aio_reqprio... yes checking for struct aiocb.aio_sigevent... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking for statfs... yes checking whether struct statfs properly defined... yes checking for f_type member of statfs structure... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for blksize_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking whether pwrite is declared... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... no checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for usleep... yes checking whether usleep needs a declaration... no setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to gfortran setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpifort setting CFLAGS to -fPIC -fstack-protector -g -O -O2 -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O -O2' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking whether /usr/bin/make supports nested variables... (cached) yes checking for perl... /usr/bin/perl checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 8 checking for size_t... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for variable argument list macro functionality... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes configure: ===== configuring mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' --disable-versioning --enable-embedded 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O -O2 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O -O2' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src -D_REENTRANT -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio/include' 'MPLLIBNAME=mpl' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes configure: Timer type selected is CLOCK_GETTIME checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no configure: POSIX will be used for thread package. checking for thread local storage... _Thread_local checking for pthread_mutex_init... yes checking for pthread_mutexattr_setpshared... yes configure: POSIX will be used for interprocess mutex package. checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... no checking for getpid... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking for usleep... (cached) yes checking whether usleep needs a declaration... (cached) no checking for posix_memalign... yes checking for aligned_alloc... yes checking whether aligned_alloc needs a declaration... no checking for backtrace_symbols... yes checking whether backtrace_create_state is declared... no checking whether backtrace_print is declared... no checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking for __attribute__((fallthrough))... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with mpl configure ===== configure: sourcing mpl/localdefs checking for doxygen... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking for strings.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking for library containing hstrerror... none required checking for gettimeofday... yes checking for time... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strsignal... yes checking for stat... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for killpg... yes checking for hstrerror... yes checking whether hstrerror needs a declaration... no checking whether gettimeofday needs a declaration... no checking whether getpgid needs a declaration... no checking whether killpg needs a declaration... no checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc configure: hwloc srcdir: /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc checking for hwloc version... 2.0.3rc2-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... tools/topo/hwloc/hwloc/ checking for hwloc symbol prefix... hwloc_ checking for gcc option to accept ISO C99... none needed checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... (cached) 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strcasecmp... yes checking whether strcasecmp is declared... yes checking whether function strcasecmp has a complete prototype... yes checking for strncasecmp... yes checking whether strncasecmp is declared... yes checking whether function strncasecmp has a complete prototype... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for PROCESSOR_NUMBER... no checking for main in -lgdi32... no checking for PostQuitMessage in -luser32... no checking for windows.h... (cached) no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking whether modff is declared... yes checking for modff in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking whether strtoull is declared... yes checking for ssize_t... yes checking whether snprintf is declared... yes checking whether _strdup is declared... no checking whether _putenv is declared... no checking whether getprogname is declared... no checking whether getexecname is declared... no checking whether GetModuleFileName is declared... no checking for program_invocation_name... yes checking for __progname... yes checking for pthread_t... yes checking whether sched_getcpu is declared... yes checking whether sched_setaffinity is declared... yes checking whether function sched_setaffinity has a complete prototype... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working syscall with 6 parameters... yes checking for lib... no checking for bash... /bin/bash checking for ffs... yes checking whether ffs is declared... yes checking whether function ffs has a complete prototype... yes checking for ffsl... yes checking whether ffsl is declared... yes checking whether function ffsl has a complete prototype... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking libudev.h usability... no checking libudev.h presence... no checking for libudev.h... no checking for PCIACCESS... no checking pciaccess.h usability... no checking pciaccess.h presence... no checking for pciaccess.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for XOpenDisplay in -lX11... yes checking for X11/Xutil.h... yes checking X11/keysym.h usability... yes checking X11/keysym.h presence... yes checking for X11/keysym.h... yes checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... yes checking libxml/parser.h usability... yes checking libxml/parser.h presence... yes checking for libxml/parser.h... yes checking for xmlNewDoc... yes checking for final LIBXML2 support... yes checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic xml_nolibxml linux linuxio xml_libxml x86 checking components to build as plugins... checking available processor topology libraries... hwloc checking slurm/slurm.h usability... no checking slurm/slurm.h presence... no checking for slurm/slurm.h... no checking for slurm_hostlist_create in -lslurm... yes checking whether POSIX compliant regcomp()/regexec()... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... no checking libcr.h presence... no checking for libcr.h... no checking for cr_init in -lcr... no checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... meminit checking error checking... yes checking warnings... no checking profiling... yes checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/hwloc/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes checking for size of MPI_Status... 20 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... 16 checking the minimum alignment of Fortran common block of 5 integers... 16, too small! reset to 32 configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/hwloc/Makefile config.status: creating src/hwloc/include/Makefile config.status: creating src/hwloc/hwloc/Makefile config.status: creating src/binding/fortran/use_mpi/mpif90model.h config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/mpir_ext.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/fortran/mpif_h/mpif.h config.status: creating src/binding/fortran/mpif_h/setbotf.f config.status: creating src/binding/fortran/mpif_h/setbot.c config.status: creating src/binding/fortran/use_mpi/mpi_sizeofs.f90 config.status: creating src/binding/fortran/use_mpi/mpi_base.f90 config.status: creating src/binding/fortran/use_mpi/mpi_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_f08_compile_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_c_interface_types.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.bash config.status: creating src/env/mpifort.sh config.status: creating src/env/mpifort.bash config.status: creating src/env/parkill config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/userguide/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: creating src/hwloc/include/private/autogen/config.h config.status: creating src/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands === configuring in test/mpi (/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking the archiver (/usr/bin/ar) interface... ar checking for grep that handles long lines and -e... /bin/grep checking for fgrep... /bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of void *... 8 checking for library containing socket... none required checking for library containing gethostbyname... none required checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/opt/slurm/14.11.3/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L. -L/opt/slurm/14.11.3/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lpthread -lgfortran -lm -lquadmath checking for Fortran 77 name mangling... lower uscore checking whether gfortran allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... yes checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g -O ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -g -O ) is a cross-compiler... no checking for Fortran flag needed to accept free-form source... none checking whether Fortran 90 supports Cray-style pointer... yes checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... (cached) 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating attr/testlist config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating coll/testlist config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating datatype/testlist config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating pt2pt/testlist config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating rma/testlist config.status: creating spawn/Makefile config.status: creating spawn/testlist config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating io/testlist config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f77/io/testlist config.status: creating f77/profile/Makefile config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/io/testlist config.status: creating f90/misc/Makefile config.status: creating f90/profile/Makefile config.status: creating f08/Makefile config.status: creating f08/attr/Makefile config.status: creating f08/datatype/Makefile config.status: creating f08/util/Makefile config.status: creating f08/coll/Makefile config.status: creating f08/comm/Makefile config.status: creating f08/pt2pt/Makefile config.status: creating f08/rma/Makefile config.status: creating f08/subarray/Makefile config.status: creating f08/topo/Makefile config.status: creating f08/io/Makefile config.status: creating f08/io/testlist config.status: creating f08/init/Makefile config.status: creating f08/info/Makefile config.status: creating f08/spawn/Makefile config.status: creating f08/spawn/testlist config.status: creating f08/timer/Makefile config.status: creating f08/ext/Makefile config.status: creating f08/misc/Makefile config.status: creating f08/profile/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/attr/testlist config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/datatype/testlist config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating cxx/spawn/testlist config.status: creating cxx/topo/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/comm/testlist config.status: creating threads/init/Makefile config.status: creating threads/mpi_t/Makefile config.status: creating threads/spawn/Makefile config.status: creating threads/rma/Makefile config.status: creating threads/coll/Makefile config.status: creating threads/coll/testlist config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/spawn/testlist config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/io/Makefile config.status: creating errors/f77/io/addsize.h config.status: creating errors/f77/io/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/io/Makefile config.status: creating errors/f08/Makefile config.status: creating errors/f08/io/Makefile config.status: creating ckpoint/Makefile config.status: creating ft/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating cxx/topo/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating f08/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating errors/f77/testlist config.status: creating errors/f90/testlist config.status: creating impls/testlist config.status: creating f77/rma/testlist config.status: creating f90/rma/testlist config.status: creating f08/rma/testlist config.status: creating impls/Makefile config.status: creating impls/hydra/Makefile config.status: creating impls/hydra/proc_binding.sh config.status: creating impls/mpich/Makefile config.status: creating impls/mpich/testlist config.status: creating impls/mpich/mpi_t/Makefile config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands === configuring in dtpools (/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/fbrarda/petsc/arch-opt' 'MAKE=/usr/bin/make' '--libdir=/home/fbrarda/petsc/arch-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14' 'FFLAGS=-fPIC -ffree-line-length-0 -g -O' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -g -O' '--enable-shared' '--with-pm=hydra' '--with-device=ch3:nemesis' '--enable-g=meminit' 'master_top_builddir=/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' 'master_top_srcdir=/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' 'FROM_MPICH=yes' 'MPICH_THREAD_LEVEL=MPI_THREAD_MULTIPLE' 'MPICH_ENABLE_F77=yes' 'MPICH_ENABLE_FC=yes' 'MPICH_ENABLE_CXX=yes' 'MPI_NO_SPAWN=' 'MPI_NO_RMA=' 'WRAPPER_CFLAGS=-fPIC -fstack-protector -g -O' 'WRAPPER_CPPFLAGS=' 'WRAPPER_LDFLAGS=' 'WRAPPER_LIBS=-lm -lxml2 -lbacktrace -lpthread -lrt ' 'WRAPPER_FFLAGS=-fPIC -ffree-line-length-0 -g -O' 'WRAPPER_FCFLAGS=-fPIC -ffree-line-length-0 -g -O' 'WRAPPER_CXXFLAGS=-fstack-protector -g -O -fPIC -std=gnu++14' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src -D_REENTRANT -I/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio/include' 'MPI_SIZEOF_AINT=8' 'MPI_SIZEOF_OFFSET=8' --cache-file=/dev/null --srcdir=. checking for gawk... gawk checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether /usr/bin/make sets $(MAKE)... yes checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether /usr/bin/make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdint.h... (cached) yes checking for sys/types.h... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for memset... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating dtpoolsconf.h config.status: executing depfiles commands config.status: executing libtool commands Configuration completed../configure: line 12600: printf %s\n: command not found ./configure: line 12601: printf %s\n: command not found configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types. configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this ./configure: line 12535: printf %s\n: command not found ./configure: line 12536: printf %s\n: command not found configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS configure: WARNING: The ch3:nemesis device did not set the maximum size of an error string, 512 being used. config.status: WARNING: 'src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting Making clean in src/mpl make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' rm -f strsep test -z "" || rm -f rm -rf .libs _libs rm -rf src/bt/.libs src/bt/_libs rm -rf src/dbg/.libs src/dbg/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/mem/.libs src/mem/_libs rm -rf src/msg/.libs src/msg/_libs rm -rf src/shm/.libs src/shm/_libs rm -rf src/sock/.libs src/sock/_libs rm -rf src/str/.libs src/str/_libs rm -rf src/thread/.libs src/thread/_libs rm -rf src/timer/.libs src/timer/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/bt/*.o rm -f src/bt/*.lo rm -f src/dbg/*.o rm -f src/dbg/*.lo rm -f src/env/*.o rm -f src/env/*.lo rm -f src/mem/*.o rm -f src/mem/*.lo rm -f src/msg/*.o rm -f src/msg/*.lo rm -f src/shm/*.o rm -f src/shm/*.lo rm -f src/sock/*.o rm -f src/sock/*.lo rm -f src/str/*.o rm -f src/str/*.lo rm -f src/thread/*.o rm -f src/thread/*.lo rm -f src/timer/*.o rm -f src/timer/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' Making clean in src/openpa make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making clean in src make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' rm -rf .libs _libs test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making clean in test make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o test -z "sanity.log test_primitives.log test_barriers.log test_queue.log" || rm -f sanity.log test_primitives.log test_barriers.log test_queue.log test -z "sanity.trs test_primitives.trs test_barriers.trs test_queue.trs" || rm -f sanity.trs test_primitives.trs test_barriers.trs test_queue.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making clean in src/hwloc make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making clean in include make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making clean in hwloc make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making clean in src/mpi/romio make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' test -z "" || rm -f rm -rf .libs _libs rm -rf adio/ad_gpfs/.libs adio/ad_gpfs/_libs rm -rf adio/ad_gpfs/bg/.libs adio/ad_gpfs/bg/_libs rm -rf adio/ad_gpfs/pe/.libs adio/ad_gpfs/pe/_libs rm -rf adio/ad_ime/.libs adio/ad_ime/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/.libs mpi-io/glue/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la " || rm -f libromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_gpfs/*.o rm -f adio/ad_gpfs/*.lo rm -f adio/ad_gpfs/bg/*.o rm -f adio/ad_gpfs/bg/*.lo rm -f adio/ad_gpfs/pe/*.o rm -f adio/ad_gpfs/pe/*.lo rm -f adio/ad_ime/*.o rm -f adio/ad_ime/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/*.o rm -f mpi-io/glue/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making clean in src/pm/hydra make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making clean in mpl make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' rm -f strsep test -z "" || rm -f rm -rf .libs _libs rm -rf src/bt/.libs src/bt/_libs rm -rf src/dbg/.libs src/dbg/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/mem/.libs src/mem/_libs rm -rf src/msg/.libs src/msg/_libs rm -rf src/shm/.libs src/shm/_libs rm -rf src/sock/.libs src/sock/_libs rm -rf src/str/.libs src/str/_libs rm -rf src/thread/.libs src/thread/_libs rm -rf src/timer/.libs src/timer/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/bt/*.o rm -f src/bt/*.lo rm -f src/dbg/*.o rm -f src/dbg/*.lo rm -f src/env/*.o rm -f src/env/*.lo rm -f src/mem/*.o rm -f src/mem/*.lo rm -f src/msg/*.o rm -f src/msg/*.lo rm -f src/shm/*.o rm -f src/shm/*.lo rm -f src/sock/*.o rm -f src/sock/*.lo rm -f src/str/*.o rm -f src/str/*.lo rm -f src/thread/*.o rm -f src/thread/*.lo rm -f src/timer/*.o rm -f src/timer/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making clean in tools/topo/hwloc/hwloc make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in include make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making clean in hwloc make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs rm -rf pm/pmiserv/.libs pm/pmiserv/_libs rm -rf tools/bootstrap/external/.libs tools/bootstrap/external/_libs rm -rf tools/bootstrap/persist/.libs tools/bootstrap/persist/_libs rm -rf tools/bootstrap/src/.libs tools/bootstrap/src/_libs rm -rf tools/bootstrap/utils/.libs tools/bootstrap/utils/_libs rm -rf tools/ckpoint/.libs tools/ckpoint/_libs rm -rf tools/ckpoint/blcr/.libs tools/ckpoint/blcr/_libs rm -rf tools/debugger/.libs tools/debugger/_libs rm -rf tools/demux/.libs tools/demux/_libs rm -rf tools/topo/.libs tools/topo/_libs rm -rf tools/topo/hwloc/.libs tools/topo/hwloc/_libs rm -rf ui/utils/.libs ui/utils/_libs rm -rf utils/alloc/.libs utils/alloc/_libs rm -rf utils/args/.libs utils/args/_libs rm -rf utils/dbg/.libs utils/dbg/_libs rm -rf utils/env/.libs utils/env/_libs rm -rf utils/launch/.libs utils/launch/_libs rm -rf utils/others/.libs utils/others/_libs rm -rf utils/signals/.libs utils/signals/_libs rm -rf utils/sock/.libs utils/sock/_libs rm -rf utils/string/.libs utils/string/_libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f pm/pmiserv/*.o rm -f pm/pmiserv/*.lo rm -f tools/bootstrap/external/*.o rm -f tools/bootstrap/external/*.lo rm -f tools/bootstrap/persist/*.o rm -f tools/bootstrap/persist/*.lo rm -f tools/bootstrap/src/*.o rm -f tools/bootstrap/src/*.lo rm -f tools/bootstrap/utils/*.o rm -f tools/bootstrap/utils/*.lo rm -f tools/ckpoint/*.o rm -f tools/ckpoint/*.lo rm -f tools/ckpoint/blcr/*.o rm -f tools/ckpoint/blcr/*.lo rm -f tools/debugger/*.o rm -f tools/debugger/*.lo rm -f tools/demux/*.o rm -f tools/demux/*.lo rm -f tools/nameserver/*.o rm -f tools/topo/*.o rm -f tools/topo/*.lo rm -f tools/topo/hwloc/*.o rm -f tools/topo/hwloc/*.lo rm -f ui/mpich/*.o rm -f ui/utils/*.o rm -f ui/utils/*.lo rm -f utils/alloc/*.o rm -f utils/alloc/*.lo rm -f utils/args/*.o rm -f utils/args/*.lo rm -f utils/dbg/*.o rm -f utils/dbg/*.lo rm -f utils/env/*.o rm -f utils/env/*.lo rm -f utils/launch/*.o rm -f utils/launch/*.lo rm -f utils/others/*.o rm -f utils/others/*.lo rm -f utils/signals/*.o rm -f utils/signals/*.lo rm -f utils/sock/*.o rm -f utils/sock/*.lo rm -f utils/string/*.o rm -f utils/string/*.lo rm -f *.lo make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making clean in . make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' rm -f src/env/mpichversion src/env/mpivars test -z "src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod " || rm -f src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod test -z " lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la" || rm -f lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/fortran/mpif_h/.libs src/binding/fortran/mpif_h/_libs rm -rf src/binding/fortran/use_mpi/.libs src/binding/fortran/use_mpi/_libs rm -rf src/binding/fortran/use_mpi_f08/.libs src/binding/fortran/use_mpi_f08/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_c/.libs src/binding/fortran/use_mpi_f08/wrappers_c/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/.libs src/binding/fortran/use_mpi_f08/wrappers_f/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/profiling/.libs src/binding/fortran/use_mpi_f08/wrappers_f/profiling/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf src/mpi/coll/algorithms/recexchalgo/.libs src/mpi/coll/algorithms/recexchalgo/_libs rm -rf src/mpi/coll/algorithms/stubalgo/.libs src/mpi/coll/algorithms/stubalgo/_libs rm -rf src/mpi/coll/algorithms/treealgo/.libs src/mpi/coll/algorithms/treealgo/_libs rm -rf src/mpi/coll/allgather/.libs src/mpi/coll/allgather/_libs rm -rf src/mpi/coll/allgatherv/.libs src/mpi/coll/allgatherv/_libs rm -rf src/mpi/coll/allreduce/.libs src/mpi/coll/allreduce/_libs rm -rf src/mpi/coll/allreduce_group/.libs src/mpi/coll/allreduce_group/_libs rm -rf src/mpi/coll/alltoall/.libs src/mpi/coll/alltoall/_libs rm -rf src/mpi/coll/alltoallv/.libs src/mpi/coll/alltoallv/_libs rm -rf src/mpi/coll/alltoallw/.libs src/mpi/coll/alltoallw/_libs rm -rf src/mpi/coll/barrier/.libs src/mpi/coll/barrier/_libs rm -rf src/mpi/coll/bcast/.libs src/mpi/coll/bcast/_libs rm -rf src/mpi/coll/exscan/.libs src/mpi/coll/exscan/_libs rm -rf src/mpi/coll/gather/.libs src/mpi/coll/gather/_libs rm -rf src/mpi/coll/gatherv/.libs src/mpi/coll/gatherv/_libs rm -rf src/mpi/coll/iallgather/.libs src/mpi/coll/iallgather/_libs rm -rf src/mpi/coll/iallgatherv/.libs src/mpi/coll/iallgatherv/_libs rm -rf src/mpi/coll/iallreduce/.libs src/mpi/coll/iallreduce/_libs rm -rf src/mpi/coll/ialltoall/.libs src/mpi/coll/ialltoall/_libs rm -rf src/mpi/coll/ialltoallv/.libs src/mpi/coll/ialltoallv/_libs rm -rf src/mpi/coll/ialltoallw/.libs src/mpi/coll/ialltoallw/_libs rm -rf src/mpi/coll/ibarrier/.libs src/mpi/coll/ibarrier/_libs rm -rf src/mpi/coll/ibcast/.libs src/mpi/coll/ibcast/_libs rm -rf src/mpi/coll/iexscan/.libs src/mpi/coll/iexscan/_libs rm -rf src/mpi/coll/igather/.libs src/mpi/coll/igather/_libs rm -rf src/mpi/coll/igatherv/.libs src/mpi/coll/igatherv/_libs rm -rf src/mpi/coll/ineighbor_allgather/.libs src/mpi/coll/ineighbor_allgather/_libs rm -rf src/mpi/coll/ineighbor_allgatherv/.libs src/mpi/coll/ineighbor_allgatherv/_libs rm -rf src/mpi/coll/ineighbor_alltoall/.libs src/mpi/coll/ineighbor_alltoall/_libs rm -rf src/mpi/coll/ineighbor_alltoallv/.libs src/mpi/coll/ineighbor_alltoallv/_libs rm -rf src/mpi/coll/ineighbor_alltoallw/.libs src/mpi/coll/ineighbor_alltoallw/_libs rm -rf src/mpi/coll/ireduce/.libs src/mpi/coll/ireduce/_libs rm -rf src/mpi/coll/ireduce_scatter/.libs src/mpi/coll/ireduce_scatter/_libs rm -rf src/mpi/coll/ireduce_scatter_block/.libs src/mpi/coll/ireduce_scatter_block/_libs rm -rf src/mpi/coll/iscan/.libs src/mpi/coll/iscan/_libs rm -rf src/mpi/coll/iscatter/.libs src/mpi/coll/iscatter/_libs rm -rf src/mpi/coll/iscatterv/.libs src/mpi/coll/iscatterv/_libs rm -rf src/mpi/coll/neighbor_allgather/.libs src/mpi/coll/neighbor_allgather/_libs rm -rf src/mpi/coll/neighbor_allgatherv/.libs src/mpi/coll/neighbor_allgatherv/_libs rm -rf src/mpi/coll/neighbor_alltoall/.libs src/mpi/coll/neighbor_alltoall/_libs rm -rf src/mpi/coll/neighbor_alltoallv/.libs src/mpi/coll/neighbor_alltoallv/_libs rm -rf src/mpi/coll/neighbor_alltoallw/.libs src/mpi/coll/neighbor_alltoallw/_libs rm -rf src/mpi/coll/op/.libs src/mpi/coll/op/_libs rm -rf src/mpi/coll/reduce/.libs src/mpi/coll/reduce/_libs rm -rf src/mpi/coll/reduce_local/.libs src/mpi/coll/reduce_local/_libs rm -rf src/mpi/coll/reduce_scatter/.libs src/mpi/coll/reduce_scatter/_libs rm -rf src/mpi/coll/reduce_scatter_block/.libs src/mpi/coll/reduce_scatter_block/_libs rm -rf src/mpi/coll/scan/.libs src/mpi/coll/scan/_libs rm -rf src/mpi/coll/scatter/.libs src/mpi/coll/scatter/_libs rm -rf src/mpi/coll/scatterv/.libs src/mpi/coll/scatterv/_libs rm -rf src/mpi/coll/src/.libs src/mpi/coll/src/_libs rm -rf src/mpi/coll/transports/gentran/.libs src/mpi/coll/transports/gentran/_libs rm -rf src/mpi/coll/transports/stubtran/.libs src/mpi/coll/transports/stubtran/_libs rm -rf src/mpi/comm/.libs src/mpi/comm/_libs rm -rf src/mpi/datatype/.libs src/mpi/datatype/_libs rm -rf src/mpi/datatype/dataloop/.libs src/mpi/datatype/dataloop/_libs rm -rf src/mpi/debugger/.libs src/mpi/debugger/_libs rm -rf src/mpi/errhan/.libs src/mpi/errhan/_libs rm -rf src/mpi/group/.libs src/mpi/group/_libs rm -rf src/mpi/info/.libs src/mpi/info/_libs rm -rf src/mpi/init/.libs src/mpi/init/_libs rm -rf src/mpi/misc/.libs src/mpi/misc/_libs rm -rf src/mpi/pt2pt/.libs src/mpi/pt2pt/_libs rm -rf src/mpi/request/.libs src/mpi/request/_libs rm -rf src/mpi/rma/.libs src/mpi/rma/_libs rm -rf src/mpi/spawn/.libs src/mpi/spawn/_libs rm -rf src/mpi/timer/.libs src/mpi/timer/_libs rm -rf src/mpi/topo/.libs src/mpi/topo/_libs rm -rf src/mpi_t/.libs src/mpi_t/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/llc/.libs src/mpid/ch3/channels/nemesis/netmod/llc/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mxm/.libs src/mpid/ch3/channels/nemesis/netmod/mxm/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/none/.libs src/mpid/ch3/channels/nemesis/netmod/none/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/ofi/.libs src/mpid/ch3/channels/nemesis/netmod/ofi/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/portals4/.libs src/mpid/ch3/channels/nemesis/netmod/portals4/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/tcp/.libs src/mpid/ch3/channels/nemesis/netmod/tcp/_libs rm -rf src/mpid/ch3/channels/nemesis/src/.libs src/mpid/ch3/channels/nemesis/src/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/monitor/.libs src/mpid/ch3/channels/nemesis/utils/monitor/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/replacements/.libs src/mpid/ch3/channels/nemesis/utils/replacements/_libs rm -rf src/mpid/ch3/channels/sock/src/.libs src/mpid/ch3/channels/sock/src/_libs rm -rf src/mpid/ch3/src/.libs src/mpid/ch3/src/_libs rm -rf src/mpid/ch3/util/ftb/.libs src/mpid/ch3/util/ftb/_libs rm -rf src/mpid/ch3/util/sock/.libs src/mpid/ch3/util/sock/_libs rm -rf src/mpid/ch4/generic/.libs src/mpid/ch4/generic/_libs rm -rf src/mpid/ch4/netmod/ofi/.libs src/mpid/ch4/netmod/ofi/_libs rm -rf src/mpid/ch4/netmod/portals4/.libs src/mpid/ch4/netmod/portals4/_libs rm -rf src/mpid/ch4/netmod/stubnm/.libs src/mpid/ch4/netmod/stubnm/_libs rm -rf src/mpid/ch4/netmod/ucx/.libs src/mpid/ch4/netmod/ucx/_libs rm -rf src/mpid/ch4/shm/posix/.libs src/mpid/ch4/shm/posix/_libs rm -rf src/mpid/ch4/shm/src/.libs src/mpid/ch4/shm/src/_libs rm -rf src/mpid/ch4/shm/stubshm/.libs src/mpid/ch4/shm/stubshm/_libs rm -rf src/mpid/ch4/src/.libs src/mpid/ch4/src/_libs rm -rf src/mpid/common/bc/.libs src/mpid/common/bc/_libs rm -rf src/mpid/common/hcoll/.libs src/mpid/common/hcoll/_libs rm -rf src/mpid/common/sched/.libs src/mpid/common/sched/_libs rm -rf src/mpid/common/shm/.libs src/mpid/common/shm/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pm/util/.libs src/pm/util/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/util/assert/.libs src/util/assert/_libs rm -rf src/util/cvar/.libs src/util/cvar/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs ( cd test && /usr/bin/make clean ) make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test' Making clean in mpi make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi' Making clean in util make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/util' rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/util' Making clean in attr make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm keyval_double_free keyval_double_free_comm keyval_double_free_type keyval_double_free_win fkeyvaltype__BASIC__L23 fkeyvaltype__STRUCT__L34" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm keyval_double_free keyval_double_free_comm keyval_double_free_type keyval_double_free_win fkeyvaltype__BASIC__L23 fkeyvaltype__STRUCT__L34 rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/attr' Making clean in basic make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/basic' Making clean in datatype make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "blockindexed_misc blockindexed_zero_count concurrent_irecv contents contig_zero_count contigstruct cxx_types dataalign darray_pack darray_cyclic gaddress get_elements get_elements_pairtype getpartelm hindexed_zeros hindexed_block hindexed_block_contents hvecblklen indexed_misc large_count large_type large_type_sendrec large_vec lbub localpack longdouble lots_of_types pairtype_pack pairtype_size_extent sendrecvt2 sendrecvt4 simple_commit simple_pack simple_pack_external simple_pack_external2 simple_resized simple_size_extent sizedtypes slice_pack slice_pack_external struct_derived_zeros struct_empty_el struct_ezhov struct_no_real_types struct_pack structpack2 struct_verydeep struct_zero_count subarray subarray_pack tfree tmatchsize transpose_pack tresized tresized2 triangular_pack typecommit typefree typelb typename unpack unusual_noncontigs vecblklen zeroblks zeroparms" || rm -f blockindexed_misc blockindexed_zero_count concurrent_irecv contents contig_zero_count contigstruct cxx_types dataalign darray_pack darray_cyclic gaddress get_elements get_elements_pairtype getpartelm hindexed_zeros hindexed_block hindexed_block_contents hvecblklen indexed_misc large_count large_type large_type_sendrec large_vec lbub localpack longdouble lots_of_types pairtype_pack pairtype_size_extent sendrecvt2 sendrecvt4 simple_commit simple_pack simple_pack_external simple_pack_external2 simple_resized simple_size_extent sizedtypes slice_pack slice_pack_external struct_derived_zeros struct_empty_el struct_ezhov struct_no_real_types struct_pack structpack2 struct_verydeep struct_zero_count subarray subarray_pack tfree tmatchsize transpose_pack tresized tresized2 triangular_pack typecommit typefree typelb typename unpack unusual_noncontigs vecblklen zeroblks zeroparms rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/datatype' Making clean in coll make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allgather_struct allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 gather_big iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 nbicbarrier nbicallgather nbicallgatherv nbicallreduce nbicbcast nbicalltoall nbicalltoallw nbicalltoallv nbicgather nbicgatherv nbicreduce nbicscatter nbicscatterv neighb_coll bcast__BASIC__L24 bcast__BASIC__L25 bcast__STRUCT__L35" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allgather_struct allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 gather_big iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 nbicbarrier nbicallgather nbicallgatherv nbicallreduce nbicbcast nbicalltoall nbicalltoallw nbicalltoallv nbicgather nbicgatherv nbicreduce nbicscatter nbicscatterv neighb_coll bcast__BASIC__L24 bcast__BASIC__L25 bcast__STRUCT__L35 rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/coll' Making clean in comm make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe_intercomm comm_idup comm_idup_mul comm_idup_overlap comm_idup_isend comm_idup_nb comm_idup_iallreduce comm_idup_comm comm_idup_comm2 comm_create_group_idup comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe_intercomm comm_idup comm_idup_mul comm_idup_overlap comm_idup_isend comm_idup_nb comm_idup_iallreduce comm_idup_comm comm_idup_comm2 comm_create_group_idup comm_info rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/comm' Making clean in errhan make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errhan' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "adderr commcall errfatal predef_eh errstring2 dynamic_errcode_predefined_errclass" || rm -f adderr commcall errfatal predef_eh errstring2 dynamic_errcode_predefined_errclass rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errhan' Making clean in group make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/group' Making clean in info make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/info' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoget infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoget infoenv rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/info' Making clean in init make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/init' Making clean in pt2pt make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel isendirecv eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel scancel_unmatch sendflood sendrecv2 sendrecv3 waitany_null probe_unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status many_isend manylmt huge_underflow huge_anysrc huge_dupcomm dtype_send recv_any irecv_any large_tag pingping__BASIC__L28 sendrecv1__BASIC__L29 sendself__BASIC__L30 sendrecv1__STRUCT__L38 sendself__STRUCT__L39 pingping__STRUCT__L40" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel isendirecv eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel scancel_unmatch sendflood sendrecv2 sendrecv3 waitany_null probe_unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status many_isend manylmt huge_underflow huge_anysrc huge_dupcomm dtype_send recv_any irecv_any large_tag pingping__BASIC__L28 sendrecv1__BASIC__L29 sendself__BASIC__L30 sendrecv1__STRUCT__L38 sendself__STRUCT__L39 pingping__STRUCT__L40 rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/pt2pt' Making clean in rma make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allocmem test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfidx accfence2 adlb_mimic1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_shared_create_allocshm win_shared_create_no_allocshm win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double fetch_and_op_char_hwacc fetch_and_op_short_hwacc fetch_and_op_int_hwacc fetch_and_op_long_hwacc fetch_and_op_double_hwacc fetch_and_op_long_double_hwacc fetch_and_op_char_accop_hwacc fetch_and_op_short_accop_hwacc fetch_and_op_int_accop_hwacc fetch_and_op_long_accop_hwacc fetch_and_op_double_accop_hwacc fetch_and_op_long_double_accop_hwacc get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma_contig badrma nb_test acc_loc acc_ordering fence_shm get_struct rput_local_comp racc_local_comp at_complete atomic_rmw_fop atomic_rmw_cas atomic_rmw_gacc atomic_get_short_int atomic_get_2int atomic_get_long_int atomic_get_float_int atomic_get_double_int atomic_get_long_double_int acc_pairtype manyget derived_acc_flush_local large_acc_flush_local large_small_acc put_flush_get acc_flush_get gacc_flush_get fop_flush_get cas_flush_get win_shared_put_flush_load win_shared_acc_flush_load win_shared_gacc_flush_load win_shared_fop_flush_load win_shared_cas_flush_load overlap_wins_put overlap_wins_acc overlap_wins_gacc overlap_wins_fop overlap_wins_cas rget_unlock lock_nested rget_testall win_shared_query_null aint accfence1__BASIC__L31 accpscw1__BASIC__L32 epochtest__BASIC__L33 getfence1__BASIC__L34 getfence1__BASIC__L35 lock_contention_dt__BASIC__L36 lock_dt__BASIC__L37 lock_dt_flush__BASIC__L38 lock_dt_flushlocal__BASIC__L39 lockall_dt__BASIC__L40 lockall_dt_flush__BASIC__L41 lockall_dt_flushall__BASIC__L42 lockall_dt_flushlocal__BASIC__L43 lockall_dt_flushlocalall__BASIC__L44 putfence1__BASIC__L45 putfence1__BASIC__L46 putpscw1__BASIC__L47 accfence1__STRUCT__L41 accpscw1__STRUCT__L42 epochtest__STRUCT__L43 getfence1__STRUCT__L44 lock_contention_dt__STRUCT__L45 lock_dt__STRUCT__L46 lock_dt_flush__STRUCT__L47 lock_dt_flushlocal__STRUCT__L48 lockall_dt__STRUCT__L49 lockall_dt_flush__STRUCT__L50 lockall_dt_flushall__STRUCT__L51 lockall_dt_flushlocal__STRUCT__L52 lockall_dt_flushlocalall__STRUCT__L53 putfence1__STRUCT__L54 putpscw1__STRUCT__L55" || rm -f allocmem test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfidx accfence2 adlb_mimic1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_shared_create_allocshm win_shared_create_no_allocshm win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double fetch_and_op_char_hwacc fetch_and_op_short_hwacc fetch_and_op_int_hwacc fetch_and_op_long_hwacc fetch_and_op_double_hwacc fetch_and_op_long_double_hwacc fetch_and_op_char_accop_hwacc fetch_and_op_short_accop_hwacc fetch_and_op_int_accop_hwacc fetch_and_op_long_accop_hwacc fetch_and_op_double_accop_hwacc fetch_and_op_long_double_accop_hwacc get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma_contig badrma nb_test acc_loc acc_ordering fence_shm get_struct rput_local_comp racc_local_comp at_complete atomic_rmw_fop atomic_rmw_cas atomic_rmw_gacc atomic_get_short_int atomic_get_2int atomic_get_long_int atomic_get_float_int atomic_get_double_int atomic_get_long_double_int acc_pairtype manyget derived_acc_flush_local large_acc_flush_local large_small_acc put_flush_get acc_flush_get gacc_flush_get fop_flush_get cas_flush_get win_shared_put_flush_load win_shared_acc_flush_load win_shared_gacc_flush_load win_shared_fop_flush_load win_shared_cas_flush_load overlap_wins_put overlap_wins_acc overlap_wins_gacc overlap_wins_fop overlap_wins_cas rget_unlock lock_nested rget_testall win_shared_query_null aint accfence1__BASIC__L31 accpscw1__BASIC__L32 epochtest__BASIC__L33 getfence1__BASIC__L34 getfence1__BASIC__L35 lock_contention_dt__BASIC__L36 lock_dt__BASIC__L37 lock_dt_flush__BASIC__L38 lock_dt_flushlocal__BASIC__L39 lockall_dt__BASIC__L40 lockall_dt_flush__BASIC__L41 lockall_dt_flushall__BASIC__L42 lockall_dt_flushlocal__BASIC__L43 lockall_dt_flushlocalall__BASIC__L44 putfence1__BASIC__L45 putfence1__BASIC__L46 putpscw1__BASIC__L47 accfence1__STRUCT__L41 accpscw1__STRUCT__L42 epochtest__STRUCT__L43 getfence1__STRUCT__L44 lock_contention_dt__STRUCT__L45 lock_dt__STRUCT__L46 lock_dt_flush__STRUCT__L47 lock_dt_flushlocal__STRUCT__L48 lockall_dt__STRUCT__L49 lockall_dt_flush__STRUCT__L50 lockall_dt_flushall__STRUCT__L51 lockall_dt_flushlocal__STRUCT__L52 lockall_dt_flushlocalall__STRUCT__L53 putfence1__STRUCT__L54 putpscw1__STRUCT__L55 rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/rma' Making clean in topo make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 dims5 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt" || rm -f cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 dims5 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/topo' Making clean in errors make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors' Making clean in attr make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "keyvalmis" || rm -f keyvalmis rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/attr' Making clean in coll make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "noalias noalias2 noalias3 rerr bcastlength reduce_local nb_noalias nb_rerr ibcastlength" || rm -f noalias noalias2 noalias3 rerr bcastlength reduce_local nb_noalias nb_rerr ibcastlength rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/coll' Making clean in comm make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 too_many_icomms too_many_icomms2 comm_create_nullarg comm_create_group_nullarg comm_get_info_nullarg comm_group_nullarg comm_size_nullarg comm_split_nullarg comm_split_type_nullarg intercomm_create_nullarg subcomm_abort subcomm_abort2 intercomm_abort" || rm -f cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 too_many_icomms too_many_icomms2 comm_create_nullarg comm_create_group_nullarg comm_get_info_nullarg comm_group_nullarg comm_size_nullarg comm_split_nullarg comm_split_type_nullarg intercomm_create_nullarg subcomm_abort subcomm_abort2 intercomm_abort rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/comm' Making clean in datatype make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "getcnterr type_contiguous_nullarg type_extent_nullarg type_get_extent_nullarg type_get_true_extent_nullarg type_get_true_extent_x_nullarg type_lb_nullarg type_ub_nullarg type_size_x_nullarg type_vector_nullarg" || rm -f getcnterr type_contiguous_nullarg type_extent_nullarg type_get_extent_nullarg type_get_true_extent_nullarg type_get_true_extent_x_nullarg type_lb_nullarg type_ub_nullarg type_size_x_nullarg type_vector_nullarg rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/datatype' Making clean in group make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "gerr group_difference_nullarg group_intersection_nullarg group_range_excl_nullarg group_range_incl_nullarg group_rank_nullarg group_size_nullarg group_translate_ranks_nullarg group_union_nullarg" || rm -f gerr group_difference_nullarg group_intersection_nullarg group_range_excl_nullarg group_range_incl_nullarg group_rank_nullarg group_size_nullarg group_translate_ranks_nullarg group_union_nullarg rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/group' Making clean in pt2pt make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa" || rm -f proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/pt2pt' Making clean in rma make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op" || rm -f winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/rma' Making clean in topo make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartsmall" || rm -f cartsmall rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/topo' Making clean in basic make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "lefthandles debabort" || rm -f lefthandles debabort rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/basic' Making clean in faults make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/faults' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "pt2ptf1 pt2ptf2 collf1 collf2" || rm -f pt2ptf1 pt2ptf2 collf1 collf2 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/faults' Making clean in io make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "fileerrret openerr file_errhdl" || rm -f fileerrret openerr file_errhdl rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/io' Making clean in f77 make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' Making clean in io make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf" || rm -f uerrhandf rm -f *.o make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77/io' make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' Making clean in f90 make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' Making clean in io make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf90" || rm -f uerrhandf90 rm -f *.o make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90/io' make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' Making clean in cxx make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' Making clean in io make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrretx errgetfilex throwtestfilex" || rm -f fileerrretx errgetfilex throwtestfilex rm -f *.o make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/io' Making clean in errhan make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commerrx errgetx errsetx throwtest" || rm -f commerrx errgetx errsetx throwtest rm -f *.o make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/errhan' make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' Making clean in spawn make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "badport unpub lookup_name connect_timeout_no_accept connect_timeout_mismatch" || rm -f badport unpub lookup_name connect_timeout_no_accept connect_timeout_mismatch rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors/spawn' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/errors' Making clean in manual make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual' Making clean in mpi_t make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size" || rm -f mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual/mpi_t' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual' test -z "summary.xml summary.tap summary.junit.xml test-port" || rm -f summary.xml summary.tap summary.junit.xml test-port test -z "singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault" || rm -f singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/manual' Making clean in perf make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/perf' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "transp_datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf" || rm -f transp_datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/perf' Making clean in mpi_t make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpi_t_str mpit_vars cvarwrite getindex" || rm -f mpi_t_str mpit_vars cvarwrite getindex rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/mpi_t' Making clean in impls make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls' Making clean in mpich make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' Making clean in mpi_t make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "collparmt" || rm -f collparmt rm -f *.o make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich/mpi_t' make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/impls' Making clean in ckpoint make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ckpoint' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "write_ckpoint" || rm -f write_ckpoint rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ckpoint' Making clean in ft make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ft' Making clean in dtpools make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' Making clean in src make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/src' rm -rf .libs _libs test -z "libdtpools.la" || rm -f libdtpools.la rm -f ./so_locations rm -f *.o rm -f *.lo make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/src' Making clean in include make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/include' rm -rf .libs _libs rm -f *.lo make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/include' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' rm -rf .libs _libs rm -f *.lo make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' Making clean in io make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml rm -f testfile testfile.* test -z "rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io simple_collective external32_derived_dtype tst_fileview i_bigtype i_hindexed_io i_rdwrord i_setviewcur i_aggregation1 i_aggregation2 i_coll_test i_darray_read i_hindexed i_noncontig_coll i_noncontig_coll2 i_types_with_zeros" || rm -f rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io simple_collective external32_derived_dtype tst_fileview i_bigtype i_hindexed_io i_rdwrord i_setviewcur i_aggregation1 i_aggregation2 i_coll_test i_darray_read i_hindexed i_noncontig_coll i_noncontig_coll2 i_types_with_zeros rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/io' Making clean in f77 make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77' Making clean in util make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/util' rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/util' Making clean in attr make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f commattr4f typeattrf typeattr2f typeattr3f" || rm -f attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f commattr4f typeattrf typeattr2f typeattr3f rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/attr' Making clean in datatype make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f bottom" || rm -f typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f bottom rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/datatype' Making clean in coll make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf" || rm -f uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/coll' Making clean in pt2pt make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sendf ssendf rsendf isendf irsendf issendf psendf prsendf pssendf sendrecvf sendrecvreplf statusesf greqf mprobef" || rm -f sendf ssendf rsendf isendf irsendf issendf psendf prsendf pssendf sendrecvf sendrecvreplf statusesf greqf mprobef rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/pt2pt' Making clean in info make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf infotest2f" || rm -f infotestf infotest2f rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/info' Making clean in init make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf" || rm -f baseenvf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/init' Making clean in comm make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef commerrf" || rm -f commnamef commerrf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/comm' Making clean in topo make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf dgraph_wgtf dgraph_unwgtf" || rm -f cartcrf dgraph_wgtf dgraph_unwgtf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/topo' Making clean in ext make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf ctypesinf c2fmult" || rm -f c2f2cf ctypesinf c2fmult rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/ext' Making clean in profile make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f" || rm -f profile1f rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/profile' Making clean in spawn make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/spawn' Making clean in io make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof i_setviewcurf iwriteatallf" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof i_setviewcurf iwriteatallf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/io' Making clean in rma make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f aintf" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f aintf rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77/rma' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f77' Making clean in f90 make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90' Making clean in util make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/util' rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/util' Making clean in timer make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/timer' Making clean in attr make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 commattr4f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 commattr4f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/attr' Making clean in coll make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/coll' Making clean in datatype make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 bottom structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 bottom structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/datatype' Making clean in pt2pt make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sendf90 ssendf90 rsendf90 isendf90 irsendf90 issendf90 psendf90 prsendf90 pssendf90 sendrecvf90 sendrecvreplf90 statusesf90 greqf90 mprobef90" || rm -f sendf90 ssendf90 rsendf90 isendf90 irsendf90 issendf90 psendf90 prsendf90 pssendf90 sendrecvf90 sendrecvreplf90 statusesf90 greqf90 mprobef90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/pt2pt' Making clean in info make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/info' Making clean in comm make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/comm' Making clean in topo make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/topo' Making clean in ext make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/ext' Making clean in init make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/init' Making clean in misc make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/misc' Making clean in f90types make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/f90types' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "createf90types" || rm -f createf90types rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/f90types' Making clean in profile make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f90" || rm -f profile1f90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/profile' Making clean in rma make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 aintf90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 aintf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/rma' Making clean in spawn make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/spawn' Making clean in io make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 i_setviewcurf90 iwriteatallf90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 i_setviewcurf90 iwriteatallf90 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90/io' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/f90' Making clean in cxx make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' Making clean in util make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/util' rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/util' Making clean in attr make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex__BASIC__L26" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex__BASIC__L26 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/attr' Making clean in pt2pt make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/pt2pt' Making clean in init make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/init' Making clean in info make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/info' Making clean in comm make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/comm' Making clean in coll make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk" || rm -f arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/coll' Making clean in datatype make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typecntsx typenamex typemiscx packsizex__BASIC__L27" || rm -f typecntsx typenamex typemiscx packsizex__BASIC__L27 rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/datatype' Making clean in errhan make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/errhan' Making clean in topo make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/topo' Making clean in io make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/io' Making clean in rma make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/rma' Making clean in spawn make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/spawn' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' Making clean in threads make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads' Making clean in util make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/util' rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/util' Making clean in pt2pt make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/pt2pt' Making clean in comm make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_create_group_threads2 comm_idup idup_deadlock ctxidup idup_nb idup_comm_gen" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_create_group_threads2 comm_idup idup_deadlock ctxidup idup_nb idup_comm_gen rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/comm' Making clean in init make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "initth" || rm -f initth rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/init' Making clean in mpi_t make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_threading" || rm -f mpit_threading rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/mpi_t' Making clean in spawn make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/spawn' Making clean in rma make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multirma multiget multifence" || rm -f multirma multiget multifence rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/rma' Making clean in coll make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "iallred allred" || rm -f iallred allred rm -f *.o make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads/coll' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/threads' Making clean in spawn make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns spawn_rootargs" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns spawn_rootargs rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/spawn' Making clean in ft make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll rm -f *.o make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi/ft' Making clean in . make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/mpi' Making clean in commands make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test/commands' Making clean in . make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/test' test -z "" || rm -f test -z " " || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/fortran/mpif_h/*.o rm -f src/binding/fortran/mpif_h/*.lo rm -f src/binding/fortran/use_mpi/*.o rm -f src/binding/fortran/use_mpi/*.lo rm -f src/binding/fortran/use_mpi_f08/*.o rm -f src/binding/fortran/use_mpi_f08/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/coll/algorithms/recexchalgo/*.o rm -f src/mpi/coll/algorithms/recexchalgo/*.lo rm -f src/mpi/coll/algorithms/stubalgo/*.o rm -f src/mpi/coll/algorithms/stubalgo/*.lo rm -f src/mpi/coll/algorithms/treealgo/*.o rm -f src/mpi/coll/algorithms/treealgo/*.lo rm -f src/mpi/coll/allgather/*.o rm -f src/mpi/coll/allgather/*.lo rm -f src/mpi/coll/allgatherv/*.o rm -f src/mpi/coll/allgatherv/*.lo rm -f src/mpi/coll/allreduce/*.o rm -f src/mpi/coll/allreduce/*.lo rm -f src/mpi/coll/allreduce_group/*.o rm -f src/mpi/coll/allreduce_group/*.lo rm -f src/mpi/coll/alltoall/*.o rm -f src/mpi/coll/alltoall/*.lo rm -f src/mpi/coll/alltoallv/*.o rm -f src/mpi/coll/alltoallv/*.lo rm -f src/mpi/coll/alltoallw/*.o rm -f src/mpi/coll/alltoallw/*.lo rm -f src/mpi/coll/barrier/*.o rm -f src/mpi/coll/barrier/*.lo rm -f src/mpi/coll/bcast/*.o rm -f src/mpi/coll/bcast/*.lo rm -f src/mpi/coll/exscan/*.o rm -f src/mpi/coll/exscan/*.lo rm -f src/mpi/coll/gather/*.o rm -f src/mpi/coll/gather/*.lo rm -f src/mpi/coll/gatherv/*.o rm -f src/mpi/coll/gatherv/*.lo rm -f src/mpi/coll/iallgather/*.o rm -f src/mpi/coll/iallgather/*.lo rm -f src/mpi/coll/iallgatherv/*.o rm -f src/mpi/coll/iallgatherv/*.lo rm -f src/mpi/coll/iallreduce/*.o rm -f src/mpi/coll/iallreduce/*.lo rm -f src/mpi/coll/ialltoall/*.o rm -f src/mpi/coll/ialltoall/*.lo rm -f src/mpi/coll/ialltoallv/*.o rm -f src/mpi/coll/ialltoallv/*.lo rm -f src/mpi/coll/ialltoallw/*.o rm -f src/mpi/coll/ialltoallw/*.lo rm -f src/mpi/coll/ibarrier/*.o rm -f src/mpi/coll/ibarrier/*.lo rm -f src/mpi/coll/ibcast/*.o rm -f src/mpi/coll/ibcast/*.lo rm -f src/mpi/coll/iexscan/*.o rm -f src/mpi/coll/iexscan/*.lo rm -f src/mpi/coll/igather/*.o rm -f src/mpi/coll/igather/*.lo rm -f src/mpi/coll/igatherv/*.o rm -f src/mpi/coll/igatherv/*.lo rm -f src/mpi/coll/ineighbor_allgather/*.o rm -f src/mpi/coll/ineighbor_allgather/*.lo rm -f src/mpi/coll/ineighbor_allgatherv/*.o rm -f src/mpi/coll/ineighbor_allgatherv/*.lo rm -f src/mpi/coll/ineighbor_alltoall/*.o rm -f src/mpi/coll/ineighbor_alltoall/*.lo rm -f src/mpi/coll/ineighbor_alltoallv/*.o rm -f src/mpi/coll/ineighbor_alltoallv/*.lo rm -f src/mpi/coll/ineighbor_alltoallw/*.o rm -f src/mpi/coll/ineighbor_alltoallw/*.lo rm -f src/mpi/coll/ireduce/*.o rm -f src/mpi/coll/ireduce/*.lo rm -f src/mpi/coll/ireduce_scatter/*.o rm -f src/mpi/coll/ireduce_scatter/*.lo rm -f src/mpi/coll/ireduce_scatter_block/*.o rm -f src/mpi/coll/ireduce_scatter_block/*.lo rm -f src/mpi/coll/iscan/*.o rm -f src/mpi/coll/iscan/*.lo rm -f src/mpi/coll/iscatter/*.o rm -f src/mpi/coll/iscatter/*.lo rm -f src/mpi/coll/iscatterv/*.o rm -f src/mpi/coll/iscatterv/*.lo rm -f src/mpi/coll/neighbor_allgather/*.o rm -f src/mpi/coll/neighbor_allgather/*.lo rm -f src/mpi/coll/neighbor_allgatherv/*.o rm -f src/mpi/coll/neighbor_allgatherv/*.lo rm -f src/mpi/coll/neighbor_alltoall/*.o rm -f src/mpi/coll/neighbor_alltoall/*.lo rm -f src/mpi/coll/neighbor_alltoallv/*.o rm -f src/mpi/coll/neighbor_alltoallv/*.lo rm -f src/mpi/coll/neighbor_alltoallw/*.o rm -f src/mpi/coll/neighbor_alltoallw/*.lo rm -f src/mpi/coll/op/*.o rm -f src/mpi/coll/op/*.lo rm -f src/mpi/coll/reduce/*.o rm -f src/mpi/coll/reduce/*.lo rm -f src/mpi/coll/reduce_local/*.o rm -f src/mpi/coll/reduce_local/*.lo rm -f src/mpi/coll/reduce_scatter/*.o rm -f src/mpi/coll/reduce_scatter/*.lo rm -f src/mpi/coll/reduce_scatter_block/*.o rm -f src/mpi/coll/reduce_scatter_block/*.lo rm -f src/mpi/coll/scan/*.o rm -f src/mpi/coll/scan/*.lo rm -f src/mpi/coll/scatter/*.o rm -f src/mpi/coll/scatter/*.lo rm -f src/mpi/coll/scatterv/*.o rm -f src/mpi/coll/scatterv/*.lo rm -f src/mpi/coll/src/*.o rm -f src/mpi/coll/src/*.lo rm -f src/mpi/coll/transports/gentran/*.o rm -f src/mpi/coll/transports/gentran/*.lo rm -f src/mpi/coll/transports/stubtran/*.o rm -f src/mpi/coll/transports/stubtran/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/datatype/dataloop/*.o rm -f src/mpi/datatype/dataloop/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f src/mpi/info/*.o rm -f src/mpi/info/*.lo rm -f src/mpi/init/*.o rm -f src/mpi/init/*.lo rm -f src/mpi/misc/*.o rm -f src/mpi/misc/*.lo rm -f src/mpi/pt2pt/*.o rm -f src/mpi/pt2pt/*.lo rm -f src/mpi/request/*.o rm -f src/mpi/request/*.lo rm -f src/mpi/rma/*.o rm -f src/mpi/rma/*.lo rm -f src/mpi/spawn/*.o rm -f src/mpi/spawn/*.lo rm -f src/mpi/timer/*.o rm -f src/mpi/timer/*.lo rm -f src/mpi/topo/*.o rm -f src/mpi/topo/*.lo rm -f src/mpi_t/*.o rm -f src/mpi_t/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/llc/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/llc/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/ofi/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/ofi/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.lo rm -f src/mpid/ch3/channels/nemesis/src/*.o rm -f src/mpid/ch3/channels/nemesis/src/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.o rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.o rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.lo rm -f src/mpid/ch3/channels/sock/src/*.o rm -f src/mpid/ch3/channels/sock/src/*.lo rm -f src/mpid/ch3/src/*.o rm -f src/mpid/ch3/src/*.lo rm -f src/mpid/ch3/util/ftb/*.o rm -f src/mpid/ch3/util/ftb/*.lo rm -f src/mpid/ch3/util/sock/*.o rm -f src/mpid/ch3/util/sock/*.lo rm -f src/mpid/ch4/generic/*.o rm -f src/mpid/ch4/generic/*.lo rm -f src/mpid/ch4/netmod/ofi/*.o rm -f src/mpid/ch4/netmod/ofi/*.lo rm -f src/mpid/ch4/netmod/portals4/*.o rm -f src/mpid/ch4/netmod/portals4/*.lo rm -f src/mpid/ch4/netmod/stubnm/*.o rm -f src/mpid/ch4/netmod/stubnm/*.lo rm -f src/mpid/ch4/netmod/ucx/*.o rm -f src/mpid/ch4/netmod/ucx/*.lo rm -f src/mpid/ch4/shm/posix/*.o rm -f src/mpid/ch4/shm/posix/*.lo rm -f src/mpid/ch4/shm/src/*.o rm -f src/mpid/ch4/shm/src/*.lo rm -f src/mpid/ch4/shm/stubshm/*.o rm -f src/mpid/ch4/shm/stubshm/*.lo rm -f src/mpid/ch4/src/*.o rm -f src/mpid/ch4/src/*.lo rm -f src/mpid/common/bc/*.o rm -f src/mpid/common/bc/*.lo rm -f src/mpid/common/hcoll/*.o rm -f src/mpid/common/hcoll/*.lo rm -f src/mpid/common/sched/*.o rm -f src/mpid/common/sched/*.lo rm -f src/mpid/common/shm/*.o rm -f src/mpid/common/shm/*.lo rm -f src/mutex/*.o rm -f src/mutex/*.lo rm -f src/nameserv/file/*.o rm -f src/nameserv/file/*.lo rm -f src/nameserv/pmi/*.o rm -f src/nameserv/pmi/*.lo rm -f src/pm/gforker/*.o rm -f src/pm/remshell/*.o rm -f src/pm/util/*.o rm -f src/pm/util/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/util/assert/*.o rm -f src/util/assert/*.lo rm -f src/util/cvar/*.o rm -f src/util/cvar/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f *.lo make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' Making clean in examples make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples'if test ! -h ./src/include/mpio.h ; then \ rm -f ./src/include/mpio.h ; \ ( cd ./src/include && \ ln -s ../mpi/romio/include/mpio.h ) ; \ fi /usr/bin/make all-recursive make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' Making all in src/mpl make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' CC src/bt/mpl_bt.lo CC src/dbg/mpl_dbg.lo CC src/env/mpl_env.lo CC src/mem/mpl_trmem.lo CC src/msg/mpl_msg.lo CC src/sock/mpl_sock.lo CC src/sock/mpl_sockaddr.lo CC src/sock/mpl_host.lo CC src/str/mpl_str.lo CC src/str/mpl_argstr.lo CC src/str/mpl_arg_serial.lo CC src/thread/mpl_thread.lo CC src/thread/mpl_thread_win.lo CC src/thread/mpl_thread_solaris.lo CC src/thread/mpl_thread_argobots.lo CC src/thread/mpl_thread_posix.lo CC src/timer/mpl_timer_clock_gettime.lo CC src/timer/mpl_timer_gcc_ia64_cycle.lo CC src/timer/mpl_timer_gethrtime.lo CC src/timer/mpl_timer_gettimeofday.lo CC src/timer/mpl_timer_linux86_cycle.lo CC src/timer/mpl_timer_ppc64_cycle.lo CC src/timer/mpl_timer_mach_absolute_time.lo CC src/timer/mpl_timer_query_performance_counter.lo CC src/timer/mpl_timer_win86_cycle.lo CC src/timer/mpl_timer_device.lo CC src/shm/mpl_shm.lo CC src/shm/mpl_shm_sysv.lo CC src/shm/mpl_shm_mmap.lo CC src/shm/mpl_shm_win.lo CCLD libmpl.la make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' Making all in src/openpa make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making all in src make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' /usr/bin/make all-am make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' CC opa_primitives.lo CC opa_queue.lo CCLD libopa.la make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making all in test make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making all in src/hwloc make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making all in include make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making all in hwloc make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' CC traversal.lo CC topology.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC shmem.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-xml-libxml.lo CC topology-linux.lo CC topology-hardwired.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making all in src/mpi/romio make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' CC mpi-io/close.lo CC mpi-io/delete.lo CC mpi-io/file_c2f.lo CC mpi-io/file_f2c.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_info.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_size.lo CC mpi-io/get_view.lo CC mpi-io/iread.lo CC mpi-io/iread_all.lo CC mpi-io/iread_at.lo CC mpi-io/iread_atall.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_all.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_atall.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/prealloc.lo CC mpi-io/rd_atallb.lo CC mpi-io/rd_atalle.lo CC mpi-io/read.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_atall.lo CC mpi-io/read_ord.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/mpich/mpio_file.lo CC mpi-io/glue/mpich/mpio_err.lo CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC mpi-io/mpir_cst_filesys.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_coll.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_coll.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str.lo CC adio/common/ad_read_str_naive.lo CC adio/common/ad_resize.lo CC adio/common/ad_seek.lo CC adio/common/ad_set_sh_fp.lo CC adio/common/ad_set_view.lo CC adio/common/ad_subarray.lo CC adio/common/ad_wait.lo CC adio/common/ad_wait_fake.lo CC adio/common/ad_write.lo CC adio/common/ad_write_coll.lo CC adio/common/ad_write_nolock.lo CC adio/common/ad_write_str.lo CC adio/common/ad_write_str_naive.lo CC adio/common/adi_close.lo CC adio/common/byte_offset.lo CC adio/common/cb_config_list.lo CC adio/common/eof_offset.lo CC adio/common/error.lo CC adio/common/flatten.lo CC adio/common/get_fp_posn.lo CC adio/common/greq_fns.lo CC adio/common/heap_sort.lo CC adio/common/iscontig.lo CC adio/common/lock.lo CC adio/common/malloc.lo CC adio/common/shfp_fname.lo CC adio/common/status_setb.lo CC adio/common/strfns.lo CC adio/common/system_hints.lo CC adio/common/hint_fns.lo CC adio/common/ad_threaded_io.lo CC adio/common/p2p_aggregation.lo CC adio/common/onesided_aggregation.lo CC adio/common/ad_tuning.lo CC adio/common/utils.lo CCLD libromio.la make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making all in src/pm/hydra make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making all in mpl make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' CC src/bt/mpl_bt.lo CC src/dbg/mpl_dbg.lo CC src/env/mpl_env.lo CC src/mem/mpl_trmem.lo CC src/msg/mpl_msg.lo CC src/sock/mpl_sock.lo CC src/sock/mpl_sockaddr.lo CC src/sock/mpl_host.lo CC src/str/mpl_str.lo CC src/str/mpl_argstr.lo CC src/str/mpl_arg_serial.lo CC src/thread/mpl_thread.lo CC src/thread/mpl_thread_win.lo CC src/thread/mpl_thread_solaris.lo CC src/thread/mpl_thread_argobots.lo CC src/thread/mpl_thread_posix.lo CC src/timer/mpl_timer_clock_gettime.lo CC src/timer/mpl_timer_gcc_ia64_cycle.lo CC src/timer/mpl_timer_gethrtime.lo CC src/timer/mpl_timer_gettimeofday.lo CC src/timer/mpl_timer_linux86_cycle.lo CC src/timer/mpl_timer_ppc64_cycle.lo CC src/timer/mpl_timer_mach_absolute_time.lo CC src/timer/mpl_timer_query_performance_counter.lo CC src/timer/mpl_timer_win86_cycle.lo CC src/timer/mpl_timer_device.lo CC src/shm/mpl_shm.lo CC src/shm/mpl_shm_sysv.lo CC src/shm/mpl_shm_mmap.lo CC src/shm/mpl_shm_win.lo CCLD libmpl.la make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making all in tools/topo/hwloc/hwloc make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in include make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making all in hwloc make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC shmem.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-xml.lo CC topology-synthetic.lo CC topology-xml-nolibxml.lo CC topology-xml-libxml.lo CC topology-linux.lo CC topology-hardwired.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in . make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' CC utils/alloc/alloc.lo CC utils/args/args.lo CC utils/dbg/dbg.lo CC utils/env/env.lo CC utils/launch/launch.lo CC utils/others/others.lo CC utils/signals/signals.lo CC utils/sock/sock.lo CC utils/string/string.lo CC tools/topo/topo.lo CC tools/topo/hwloc/topo_hwloc.lo CC tools/bootstrap/src/bsci_init.lo CC tools/bootstrap/src/bsci_launch.lo CC tools/bootstrap/src/bsci_finalize.lo CC tools/bootstrap/src/bsci_query_node_list.lo CC tools/bootstrap/src/bsci_query_proxy_id.lo CC tools/bootstrap/src/bsci_query_native_int.lo CC tools/bootstrap/src/bsci_wait.lo CC tools/bootstrap/src/bsci_env.lo CC tools/bootstrap/utils/bscu_wait.lo CC tools/bootstrap/utils/bscu_cb.lo CC tools/bootstrap/external/external_common.lo CC tools/bootstrap/external/external_common_launch.lo CC tools/bootstrap/external/fork_init.lo CC tools/bootstrap/external/user_init.lo CC tools/bootstrap/external/manual_init.lo CC tools/bootstrap/external/rsh_init.lo CC tools/bootstrap/external/rsh_env.lo CC tools/bootstrap/external/ssh_init.lo CC tools/bootstrap/external/ssh.lo CC tools/bootstrap/external/ssh_env.lo CC tools/bootstrap/external/ssh_finalize.lo CC tools/bootstrap/external/slurm_init.lo CC tools/bootstrap/external/slurm_launch.lo CC tools/bootstrap/external/slurm_env.lo CC tools/bootstrap/external/slurm_query_native_int.lo CC tools/bootstrap/external/slurm_query_node_list.lo CC tools/bootstrap/external/slurm_query_proxy_id.lo CC tools/bootstrap/external/ll_init.lo CC tools/bootstrap/external/ll_launch.lo CC tools/bootstrap/external/ll_query_native_int.lo CC tools/bootstrap/external/ll_query_node_list.lo CC 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tools/debugger/debugger.lo CC ui/utils/uiu.lo CC pm/pmiserv/pmiserv_pmi.lo CC pm/pmiserv/pmiserv_pmi_v1.lo CC pm/pmiserv/pmiserv_pmi_v2.lo CC pm/pmiserv/pmiserv_pmci.lo CC pm/pmiserv/pmiserv_cb.lo CC pm/pmiserv/pmiserv_utils.lo CC pm/pmiserv/common.lo CC pm/pmiserv/pmi_v2_common.lo CC tools/bootstrap/persist/hydra_persist-persist_server.o CC tools/nameserver/hydra_nameserver-hydra_nameserver.o CC pm/pmiserv/hydra_pmi_proxy-pmip.o CC pm/pmiserv/hydra_pmi_proxy-pmip_utils.o CC pm/pmiserv/hydra_pmi_proxy-pmip_cb.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v1.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v2.o CC pm/pmiserv/hydra_pmi_proxy-common.o CC pm/pmiserv/hydra_pmi_proxy-pmi_v2_common.o CC ui/mpich/mpiexec.o CC ui/mpich/utils.o CCLD libhydra.la CCLD hydra_persist CCLD hydra_nameserver CCLD hydra_pmi_proxy CCLD libpm.la CCLD mpiexec.hydra make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making all in . make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' CC src/mpi/attr/lib_libmpi_la-attrutil.lo CC src/mpi/attr/lib_libmpi_la-dup_fn.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_allcomm_nb.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_recursive_doubling.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_brucks.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_ring.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_inter_local_gather_remote_bcast.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_allcomm_nb.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_recursive_doubling.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_brucks.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_ring.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_inter_remote_gather_local_bcast.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_allcomm_nb.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_recursive_doubling.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_reduce_scatter_allgather.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_smp.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_inter_reduce_exchange_bcast.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_allcomm_nb.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_brucks.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_scattered.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_pairwise.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_inter_pairwise_exchange.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_allcomm_nb.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_intra_scattered.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_inter_pairwise_exchange.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_allcomm_nb.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_intra_scattered.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_inter_pairwise_exchange.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_allcomm_nb.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_intra_dissemination.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_intra_smp.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_inter_bcast.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_utils.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_allcomm_nb.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_binomial.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_scatter_recursive_doubling_allgather.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_scatter_ring_allgather.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_inter_remote_send_local_bcast.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_smp.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan_allcomm_nb.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan_intra_recursive_doubling.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_allcomm_nb.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_intra_binomial.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_inter_linear.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_inter_local_gather_remote_send.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv_allcomm_nb.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv_allcomm_linear.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_allcomm_nb.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_recursive_halving.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_pairwise.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_recursive_doubling.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_noncommutative.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_inter_remote_reduce_local_scatter.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_allcomm_nb.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_recursive_halving.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_pairwise.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_recursive_doubling.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_noncommutative.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_inter_remote_reduce_local_scatter.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_allcomm_nb.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_intra_binomial.lo CC 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src/mpi/coll/neighbor_alltoall/lib_libmpi_la-neighbor_alltoall_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoallv/lib_libmpi_la-neighbor_alltoallv_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoallw/lib_libmpi_la-neighbor_alltoallw_allcomm_nb.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recursive_doubling.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_brucks.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_ring.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_inter_local_gather_remote_bcast.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_gentran_algos.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recexch_distance_doubling.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recexch_distance_halving.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_gentran_brucks.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_recursive_doubling.lo CC 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src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_intra_inplace.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_intra_blocked.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_inter_pairwise_exchange.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_intra_recursive_doubling.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_inter_bcast.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_intra_recexch.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_binomial.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_ring_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_recursive_doubling_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_smp.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_inter_flat.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_gentran_algos.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_tree.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_recexch_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_ring.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_utils.lo CC src/mpi/coll/iexscan/lib_libmpi_la-iexscan_intra_recursive_doubling.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_intra_binomial.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_inter_short.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_inter_long.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_gentran_algos.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_intra_tree.lo CC src/mpi/coll/igatherv/lib_libmpi_la-igatherv_allcomm_linear.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recursive_halving.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_pairwise.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recursive_doubling.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_noncommutative.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_inter_remote_reduce_local_scatterv.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_gentran_algos.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recexch.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recursive_halving.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_pairwise.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recursive_doubling.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_noncommutative.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_inter_remote_reduce_local_scatterv.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_gentran_algos.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recexch.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_binomial.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_reduce_scatter_gather.lo CC 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src/mpi/comm/lib_libmpi_la-contextid.lo CC src/mpi/datatype/lib_libmpi_la-typeutil.lo CC src/mpi/datatype/lib_libmpi_la-ext32_datatype.lo CC src/mpi/datatype/lib_libmpi_la-looputil.lo CC src/mpi/datatype/lib_libmpi_la-type_blockindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_create_pairtype.lo CC src/mpi/datatype/lib_libmpi_la-type_debug.lo CC src/mpi/datatype/lib_libmpi_la-type_flatten.lo CC src/mpi/errhan/lib_libmpi_la-errutil.lo CC src/mpi/errhan/lib_libmpi_la-dynerrutil.lo CC src/mpi/group/lib_libmpi_la-grouputil.lo CC src/mpi/info/lib_libmpi_la-infoutil.lo CC src/mpi/init/lib_libmpi_la-initinfo.lo CC src/mpi/init/lib_libmpi_la-async.lo CC src/mpi/init/lib_libmpi_la-netloc_util.lo CC src/mpi/pt2pt/lib_libmpi_la-bsendutil.lo CC src/mpi/request/lib_libmpi_la-mpir_request.lo CC src/mpi/rma/lib_libmpi_la-winutil.lo CC src/mpi/rma/lib_libmpi_la-rmatypeutil.lo CC src/mpi/topo/lib_libmpi_la-topoutil.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-fdebug.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-setbot.lo F77 src/binding/fortran/mpif_h/setbotf.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_util.lo CC src/glue/romio/lib_libmpi_la-glue_romio.lo CC src/mpi_t/lib_libmpi_la-mpit.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-exscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-redscatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouptranksf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_unionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupinterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupdifff.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_inclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_exclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprinclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprexclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dup_with_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_splitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commtesticf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrsizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrgroupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iccreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-icmergef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-topo_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dims_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graphdims_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cartdim_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_coordsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbcountf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbrsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_shiftf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_subf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getpnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_library_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhcreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhfreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_stringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_classf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initializedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-abortf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-close_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_acceptf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_connectf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdiscf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commparentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_joinf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_spawnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-spawnmultf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-lookup_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-open_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-publish_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpubnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_completef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_fencef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_postf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocate_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_shared_queryf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_create_dynamicf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_attachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_detachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fetch_and_opf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-compare_and_swapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rputf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-raccumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rget_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flushf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_local_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrclassf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrcodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrstringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgetnamf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqcompletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqstartf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isthrmainf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-query_threadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statgetclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statsetelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typenewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typefreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetcntsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetenvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_match_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-windelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alloc_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filegeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fileseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-free_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognthkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infovallenf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_setf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_externalf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packesizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reqgetstatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedarrayf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechindf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechvecf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecindbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_create_hindexed_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecresizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecstructf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecsubarrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetextentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegtextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wingeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_commutativef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_create_adjacentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighbors_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighborsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-improbef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-imrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_idupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibarrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iexscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_split_typef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-status_set_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_true_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_size_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_create_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_ackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_get_ackedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_revokef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_shrinkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_agreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_openf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_closef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-aint_addf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-aint_difff.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo rm -f src/binding/fortran/use_mpi/mpifnoext.h sed -e 's/^C/\!/g' -e '/EXTERNAL/d' \ -e '/REAL\*8/d' \ -e '/DOUBLE PRECISION/d' \ -e '/MPI_WTICK/d' src/binding/fortran/mpif_h/mpif.h > src/binding/fortran/use_mpi/mpifnoext.h cp -p src/env/mpicc.bash src/env/mpicc cp -p src/env/mpifort.bash src/env/mpifort cp -p src/env/mpicxx.bash src/env/mpicxx CC src/mpi/attr/lib_libmpi_la-attr_delete.lo CC src/mpi/attr/lib_libmpi_la-attr_get.lo CC src/mpi/attr/lib_libmpi_la-attr_put.lo CC src/mpi/attr/lib_libmpi_la-comm_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_get_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_set_attr.lo CC src/mpi/attr/lib_libmpi_la-keyval_create.lo CC src/mpi/attr/lib_libmpi_la-keyval_free.lo CC src/mpi/attr/lib_libmpi_la-type_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-type_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_get_attr.lo CC src/mpi/attr/lib_libmpi_la-type_set_attr.lo CC src/mpi/attr/lib_libmpi_la-win_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-win_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_get_attr.lo CC src/mpi/attr/lib_libmpi_la-win_set_attr.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan.lo CC src/mpi/coll/gather/lib_libmpi_la-gather.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce.lo CC src/mpi/coll/scan/lib_libmpi_la-scan.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter.lo CC src/mpi/coll/scatterv/lib_libmpi_la-scatterv.lo CC src/mpi/coll/neighbor_allgather/lib_libmpi_la-neighbor_allgather.lo CC src/mpi/coll/neighbor_allgatherv/lib_libmpi_la-neighbor_allgatherv.lo CC src/mpi/coll/neighbor_alltoall/lib_libmpi_la-neighbor_alltoall.lo CC src/mpi/coll/neighbor_alltoallv/lib_libmpi_la-neighbor_alltoallv.lo CC src/mpi/coll/neighbor_alltoallw/lib_libmpi_la-neighbor_alltoallw.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast.lo CC src/mpi/coll/iexscan/lib_libmpi_la-iexscan.lo CC src/mpi/coll/igather/lib_libmpi_la-igather.lo CC src/mpi/coll/igatherv/lib_libmpi_la-igatherv.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce.lo CC src/mpi/coll/iscan/lib_libmpi_la-iscan.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter.lo CC src/mpi/coll/iscatterv/lib_libmpi_la-iscatterv.lo CC src/mpi/coll/ineighbor_allgather/lib_libmpi_la-ineighbor_allgather.lo CC src/mpi/coll/ineighbor_allgatherv/lib_libmpi_la-ineighbor_allgatherv.lo CC src/mpi/coll/ineighbor_alltoall/lib_libmpi_la-ineighbor_alltoall.lo CC src/mpi/coll/ineighbor_alltoallv/lib_libmpi_la-ineighbor_alltoallv.lo CC src/mpi/coll/ineighbor_alltoallw/lib_libmpi_la-ineighbor_alltoallw.lo CC src/mpi/coll/op/lib_libmpi_la-op_create.lo CC src/mpi/coll/op/lib_libmpi_la-op_free.lo CC src/mpi/coll/op/lib_libmpi_la-op_commutative.lo CC src/mpi/coll/reduce_local/lib_libmpi_la-reduce_local.lo CC src/mpi/comm/lib_libmpi_la-comm_compare.lo CC src/mpi/comm/lib_libmpi_la-comm_create.lo CC src/mpi/comm/lib_libmpi_la-comm_create_group.lo CC src/mpi/comm/lib_libmpi_la-comm_dup.lo CC src/mpi/comm/lib_libmpi_la-comm_dup_with_info.lo CC src/mpi/comm/lib_libmpi_la-comm_free.lo CC src/mpi/comm/lib_libmpi_la-comm_get_name.lo CC src/mpi/comm/lib_libmpi_la-comm_get_info.lo CC src/mpi/comm/lib_libmpi_la-comm_set_info.lo CC src/mpi/comm/lib_libmpi_la-comm_group.lo CC src/mpi/comm/lib_libmpi_la-comm_idup.lo CC src/mpi/comm/lib_libmpi_la-comm_rank.lo CC src/mpi/comm/lib_libmpi_la-comm_size.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_group.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_size.lo CC src/mpi/comm/lib_libmpi_la-comm_set_name.lo CC src/mpi/comm/lib_libmpi_la-comm_split.lo CC src/mpi/comm/lib_libmpi_la-comm_test_inter.lo CC src/mpi/comm/lib_libmpi_la-intercomm_create.lo CC src/mpi/comm/lib_libmpi_la-intercomm_merge.lo CC src/mpi/comm/lib_libmpi_la-comm_split_type.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_ack.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_get_acked.lo CC src/mpi/comm/lib_libmpi_la-comm_revoke.lo CC src/mpi/comm/lib_libmpi_la-comm_shrink.lo CC src/mpi/comm/lib_libmpi_la-comm_agree.lo CC src/mpi/datatype/lib_libmpi_la-address.lo CC src/mpi/datatype/lib_libmpi_la-get_address.lo CC src/mpi/datatype/lib_libmpi_la-get_count.lo CC src/mpi/datatype/lib_libmpi_la-get_elements.lo CC src/mpi/datatype/lib_libmpi_la-get_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-pack.lo CC src/mpi/datatype/lib_libmpi_la-pack_external.lo CC src/mpi/datatype/lib_libmpi_la-pack_external_size.lo CC src/mpi/datatype/lib_libmpi_la-pack_size.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-type_get_name.lo CC src/mpi/datatype/lib_libmpi_la-type_set_name.lo CC src/mpi/datatype/lib_libmpi_la-type_size.lo CC src/mpi/datatype/lib_libmpi_la-type_size_x.lo CC src/mpi/datatype/lib_libmpi_la-type_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_vector.lo CC src/mpi/datatype/lib_libmpi_la-type_commit.lo CC src/mpi/datatype/lib_libmpi_la-type_indexed.lo CC src/mpi/datatype/lib_libmpi_la-type_hindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_struct.lo CC src/mpi/datatype/lib_libmpi_la-type_contiguous.lo CC src/mpi/datatype/lib_libmpi_la-type_free.lo CC src/mpi/datatype/lib_libmpi_la-type_hvector.lo CC src/mpi/datatype/lib_libmpi_la-type_dup.lo CC src/mpi/datatype/lib_libmpi_la-type_get_envelope.lo CC src/mpi/datatype/lib_libmpi_la-type_get_contents.lo CC src/mpi/datatype/lib_libmpi_la-type_ub.lo CC src/mpi/datatype/lib_libmpi_la-type_lb.lo CC src/mpi/datatype/lib_libmpi_la-type_get_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_get_extent_x.lo CC src/mpi/datatype/lib_libmpi_la-type_get_true_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_get_true_extent_x.lo CC src/mpi/datatype/lib_libmpi_la-type_match_size.lo CC src/mpi/datatype/lib_libmpi_la-type_create_struct.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hvector.lo CC src/mpi/datatype/lib_libmpi_la-type_create_indexed_block.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hindexed_block.lo CC src/mpi/datatype/lib_libmpi_la-type_create_resized.lo CC src/mpi/datatype/lib_libmpi_la-type_create_darray.lo CC src/mpi/datatype/lib_libmpi_la-type_create_subarray.lo CC src/mpi/datatype/lib_libmpi_la-unpack.lo CC src/mpi/datatype/lib_libmpi_la-unpack_external.lo CC src/mpi/errhan/lib_libmpi_la-add_error_code.lo CC src/mpi/errhan/lib_libmpi_la-add_error_class.lo CC src/mpi/errhan/lib_libmpi_la-add_error_string.lo CC src/mpi/errhan/lib_libmpi_la-comm_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_set_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_create.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_free.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_get.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_set.lo CC src/mpi/errhan/lib_libmpi_la-error_class.lo CC src/mpi/errhan/lib_libmpi_la-error_string.lo CC src/mpi/errhan/lib_libmpi_la-file_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_set_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_set_errhandler.lo CC src/mpi/group/lib_libmpi_la-group_compare.lo CC src/mpi/group/lib_libmpi_la-group_difference.lo CC src/mpi/group/lib_libmpi_la-group_excl.lo CC src/mpi/group/lib_libmpi_la-group_free.lo CC src/mpi/group/lib_libmpi_la-group_incl.lo CC src/mpi/group/lib_libmpi_la-group_intersection.lo CC src/mpi/group/lib_libmpi_la-group_range_excl.lo CC src/mpi/group/lib_libmpi_la-group_range_incl.lo CC src/mpi/group/lib_libmpi_la-group_rank.lo CC src/mpi/group/lib_libmpi_la-group_size.lo CC src/mpi/group/lib_libmpi_la-group_translate_ranks.lo CC src/mpi/group/lib_libmpi_la-group_union.lo CC src/mpi/info/lib_libmpi_la-info_create.lo CC src/mpi/info/lib_libmpi_la-info_delete.lo CC src/mpi/info/lib_libmpi_la-info_dup.lo CC src/mpi/info/lib_libmpi_la-info_free.lo CC src/mpi/info/lib_libmpi_la-info_get.lo CC src/mpi/info/lib_libmpi_la-info_getn.lo CC src/mpi/info/lib_libmpi_la-info_getnth.lo CC src/mpi/info/lib_libmpi_la-info_getvallen.lo CC src/mpi/info/lib_libmpi_la-info_set.lo CC src/mpi/init/lib_libmpi_la-abort.lo CC src/mpi/init/lib_libmpi_la-init.lo CC src/mpi/init/lib_libmpi_la-initialized.lo CC src/mpi/init/lib_libmpi_la-initthread.lo CC src/mpi/init/lib_libmpi_la-ismain.lo CC src/mpi/init/lib_libmpi_la-finalize.lo CC src/mpi/init/lib_libmpi_la-finalized.lo CC src/mpi/init/lib_libmpi_la-querythread.lo CC src/mpi/misc/lib_libmpi_la-getpname.lo CC src/mpi/misc/lib_libmpi_la-pcontrol.lo CC src/mpi/misc/lib_libmpi_la-version.lo CC src/mpi/misc/lib_libmpi_la-library_version.lo CC src/mpi/misc/lib_libmpi_la-aint_add.lo CC src/mpi/misc/lib_libmpi_la-aint_diff.lo CC src/mpi/misc/lib_libmpi_la-utils.lo CC src/mpi/pt2pt/lib_libmpi_la-bsend.lo CC src/mpi/pt2pt/lib_libmpi_la-bsend_init.lo CC src/mpi/pt2pt/lib_libmpi_la-bufattach.lo CC src/mpi/pt2pt/lib_libmpi_la-buffree.lo CC src/mpi/pt2pt/lib_libmpi_la-ibsend.lo CC src/mpi/pt2pt/lib_libmpi_la-improbe.lo CC src/mpi/pt2pt/lib_libmpi_la-imrecv.lo CC src/mpi/pt2pt/lib_libmpi_la-iprobe.lo CC src/mpi/pt2pt/lib_libmpi_la-irecv.lo CC src/mpi/pt2pt/lib_libmpi_la-irsend.lo CC src/mpi/pt2pt/lib_libmpi_la-isend.lo CC src/mpi/pt2pt/lib_libmpi_la-issend.lo CC src/mpi/pt2pt/lib_libmpi_la-mprobe.lo CC src/mpi/pt2pt/lib_libmpi_la-mrecv.lo CC src/mpi/pt2pt/lib_libmpi_la-probe.lo CC src/mpi/pt2pt/lib_libmpi_la-recv.lo CC src/mpi/pt2pt/lib_libmpi_la-recv_init.lo CC src/mpi/pt2pt/lib_libmpi_la-rsend.lo CC src/mpi/pt2pt/lib_libmpi_la-rsend_init.lo CC src/mpi/pt2pt/lib_libmpi_la-send.lo CC src/mpi/pt2pt/lib_libmpi_la-send_init.lo CC src/mpi/pt2pt/lib_libmpi_la-sendrecv.lo CC src/mpi/pt2pt/lib_libmpi_la-sendrecv_rep.lo CC src/mpi/pt2pt/lib_libmpi_la-ssend.lo CC src/mpi/pt2pt/lib_libmpi_la-ssend_init.lo CC src/mpi/request/lib_libmpi_la-cancel.lo CC src/mpi/request/lib_libmpi_la-greq_start.lo CC src/mpi/request/lib_libmpi_la-greq_complete.lo CC src/mpi/request/lib_libmpi_la-request_free.lo CC src/mpi/request/lib_libmpi_la-request_get_status.lo CC src/mpi/request/lib_libmpi_la-status_set_cancelled.lo CC src/mpi/request/lib_libmpi_la-start.lo CC src/mpi/request/lib_libmpi_la-startall.lo CC src/mpi/request/lib_libmpi_la-test.lo CC src/mpi/request/lib_libmpi_la-test_cancelled.lo CC src/mpi/request/lib_libmpi_la-testall.lo CC src/mpi/request/lib_libmpi_la-testany.lo CC src/mpi/request/lib_libmpi_la-testsome.lo CC src/mpi/request/lib_libmpi_la-wait.lo CC src/mpi/request/lib_libmpi_la-waitall.lo CC src/mpi/request/lib_libmpi_la-waitany.lo CC src/mpi/request/lib_libmpi_la-waitsome.lo CC src/mpi/rma/lib_libmpi_la-accumulate.lo CC src/mpi/rma/lib_libmpi_la-alloc_mem.lo CC src/mpi/rma/lib_libmpi_la-compare_and_swap.lo CC src/mpi/rma/lib_libmpi_la-fetch_and_op.lo CC src/mpi/rma/lib_libmpi_la-free_mem.lo CC src/mpi/rma/lib_libmpi_la-get.lo CC src/mpi/rma/lib_libmpi_la-get_accumulate.lo CC src/mpi/rma/lib_libmpi_la-put.lo CC src/mpi/rma/lib_libmpi_la-raccumulate.lo CC src/mpi/rma/lib_libmpi_la-rget.lo CC src/mpi/rma/lib_libmpi_la-rget_accumulate.lo CC src/mpi/rma/lib_libmpi_la-rput.lo CC src/mpi/rma/lib_libmpi_la-win_allocate.lo CC src/mpi/rma/lib_libmpi_la-win_allocate_shared.lo CC src/mpi/rma/lib_libmpi_la-win_attach.lo CC src/mpi/rma/lib_libmpi_la-win_complete.lo CC src/mpi/rma/lib_libmpi_la-win_create.lo CC src/mpi/rma/lib_libmpi_la-win_create_dynamic.lo CC src/mpi/rma/lib_libmpi_la-win_detach.lo CC src/mpi/rma/lib_libmpi_la-win_fence.lo CC src/mpi/rma/lib_libmpi_la-win_flush.lo CC src/mpi/rma/lib_libmpi_la-win_flush_all.lo CC src/mpi/rma/lib_libmpi_la-win_flush_local.lo CC src/mpi/rma/lib_libmpi_la-win_flush_local_all.lo CC src/mpi/rma/lib_libmpi_la-win_free.lo CC src/mpi/rma/lib_libmpi_la-win_get_group.lo CC src/mpi/rma/lib_libmpi_la-win_get_info.lo CC src/mpi/rma/lib_libmpi_la-win_get_name.lo CC src/mpi/rma/lib_libmpi_la-win_lock.lo CC src/mpi/rma/lib_libmpi_la-win_lock_all.lo CC src/mpi/rma/lib_libmpi_la-win_post.lo CC src/mpi/rma/lib_libmpi_la-win_set_info.lo CC src/mpi/rma/lib_libmpi_la-win_set_name.lo CC src/mpi/rma/lib_libmpi_la-win_shared_query.lo CC src/mpi/rma/lib_libmpi_la-win_start.lo CC src/mpi/rma/lib_libmpi_la-win_sync.lo CC src/mpi/rma/lib_libmpi_la-win_test.lo CC src/mpi/rma/lib_libmpi_la-win_unlock.lo CC src/mpi/rma/lib_libmpi_la-win_unlock_all.lo CC src/mpi/rma/lib_libmpi_la-win_wait.lo CC src/mpi/spawn/lib_libmpi_la-comm_disconnect.lo CC src/mpi/spawn/lib_libmpi_la-comm_get_parent.lo CC src/mpi/spawn/lib_libmpi_la-comm_join.lo CC src/mpi/spawn/lib_libmpi_la-comm_spawn.lo CC src/mpi/spawn/lib_libmpi_la-comm_spawn_multiple.lo CC src/mpi/spawn/lib_libmpi_la-lookup_name.lo CC src/mpi/spawn/lib_libmpi_la-publish_name.lo CC src/mpi/spawn/lib_libmpi_la-unpublish_name.lo CC src/mpi/spawn/lib_libmpi_la-open_port.lo CC src/mpi/spawn/lib_libmpi_la-close_port.lo CC src/mpi/spawn/lib_libmpi_la-comm_connect.lo CC src/mpi/spawn/lib_libmpi_la-comm_accept.lo CC src/mpi/timer/lib_libmpi_la-wtime.lo CC src/mpi/timer/lib_libmpi_la-wtick.lo CC src/mpi/topo/lib_libmpi_la-cart_coords.lo CC src/mpi/topo/lib_libmpi_la-cart_create.lo CC src/mpi/topo/lib_libmpi_la-cart_get.lo CC src/mpi/topo/lib_libmpi_la-cart_map.lo CC src/mpi/topo/lib_libmpi_la-cart_rank.lo CC src/mpi/topo/lib_libmpi_la-cart_shift.lo CC src/mpi/topo/lib_libmpi_la-cart_sub.lo CC src/mpi/topo/lib_libmpi_la-dims_create.lo CC src/mpi/topo/lib_libmpi_la-graph_get.lo CC src/mpi/topo/lib_libmpi_la-graph_nbr.lo CC src/mpi/topo/lib_libmpi_la-graph_map.lo CC src/mpi/topo/lib_libmpi_la-graphcreate.lo CC src/mpi/topo/lib_libmpi_la-graphdimsget.lo CC src/mpi/topo/lib_libmpi_la-graphnbrcnt.lo CC src/mpi/topo/lib_libmpi_la-cartdim_get.lo CC src/mpi/topo/lib_libmpi_la-topo_test.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_create_adj.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_create.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_neighb_count.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_neighb.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-statusf2c.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-statusc2f.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_int.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_real.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_complex.lo CC src/glue/romio/lib_libmpi_la-all_romio_symbols.lo CC src/mutex/lib_libmpi_la-mutex_create.lo CC src/mutex/lib_libmpi_la-mutex_free.lo CC src/mutex/lib_libmpi_la-mutex_lock.lo CC src/mutex/lib_libmpi_la-mutex_unlock.lo CC src/mpi_t/lib_libmpi_la-cat_changed.lo CC src/mpi_t/lib_libmpi_la-cat_get_categories.lo CC src/mpi_t/lib_libmpi_la-cat_get_cvars.lo CC src/mpi_t/lib_libmpi_la-cat_get_info.lo CC src/mpi_t/lib_libmpi_la-cat_get_num.lo CC src/mpi_t/lib_libmpi_la-cat_get_pvars.lo CC src/mpi_t/lib_libmpi_la-cvar_get_info.lo CC src/mpi_t/lib_libmpi_la-cvar_get_num.lo CC src/mpi_t/lib_libmpi_la-cvar_handle_alloc.lo CC src/mpi_t/lib_libmpi_la-cvar_handle_free.lo CC src/mpi_t/lib_libmpi_la-cvar_read.lo CC src/mpi_t/lib_libmpi_la-cvar_write.lo CC src/mpi_t/lib_libmpi_la-enum_get_info.lo CC src/mpi_t/lib_libmpi_la-enum_get_item.lo CC src/mpi_t/lib_libmpi_la-mpit_finalize.lo CC src/mpi_t/lib_libmpi_la-mpit_initthread.lo CC src/mpi_t/lib_libmpi_la-pvar_get_info.lo CC src/mpi_t/lib_libmpi_la-pvar_get_num.lo CC src/mpi_t/lib_libmpi_la-pvar_handle_alloc.lo CC src/mpi_t/lib_libmpi_la-pvar_handle_free.lo CC src/mpi_t/lib_libmpi_la-pvar_read.lo CC src/mpi_t/lib_libmpi_la-pvar_readreset.lo CC src/mpi_t/lib_libmpi_la-pvar_reset.lo CC src/mpi_t/lib_libmpi_la-pvar_session_create.lo CC src/mpi_t/lib_libmpi_la-pvar_session_free.lo CC src/mpi_t/lib_libmpi_la-pvar_start.lo CC src/mpi_t/lib_libmpi_la-pvar_stop.lo CC src/mpi_t/lib_libmpi_la-pvar_write.lo CC src/mpi_t/lib_libmpi_la-cat_get_index.lo CC src/mpi_t/lib_libmpi_la-cvar_get_index.lo CC src/mpi_t/lib_libmpi_la-pvar_get_index.lo CC src/mpi/coll/allreduce_group/lib_libmpi_la-allreduce_group.lo CC src/mpi/coll/src/lib_libmpi_la-coll_impl.lo CC src/mpi/coll/transports/gentran/lib_libmpi_la-gentran_impl.lo CC src/mpi/coll/transports/gentran/lib_libmpi_la-gentran_utils.lo CC src/mpi/coll/transports/gentran/lib_libmpi_la-tsp_gentran.lo CC src/mpi/coll/transports/stubtran/lib_libmpi_la-stubtran_impl.lo CC src/mpi/coll/transports/stubtran/lib_libmpi_la-tsp_stubtran.lo CC src/mpi/coll/algorithms/treealgo/lib_libmpi_la-treealgo.lo CC src/mpi/coll/algorithms/treealgo/lib_libmpi_la-treeutil.lo CC src/mpi/coll/algorithms/recexchalgo/lib_libmpi_la-recexchalgo.lo CC src/mpi/coll/algorithms/stubalgo/lib_libmpi_la-stubalgo.lo CC src/mpi/coll/lib_libmpi_la-helper_fns.lo CC src/mpi/coll/lib_libmpi_la-nbcutil.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-darray_support.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_blockindexed.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_contig.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_indexed.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_pairtype.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_struct.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_vector.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-segment.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-segment_count.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-segment_flatten.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-subarray_support.lo CC src/util/mem/lib_libmpi_la-handlemem.lo CC src/util/mem/lib_libmpi_la-strerror.lo CC src/util/cvar/lib_libmpi_la-mpir_cvars.lo CC src/util/procmap/lib_libmpi_la-local_proc.lo CC src/util/assert/lib_libmpi_la-assert.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_buffer.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_comm.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_comm_spawn_multiple.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_connection.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_recv_pkt.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_recv_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_revoke_pkt.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_send_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_op_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_port.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_recvq.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_request.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_progress.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_ops.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_reqops.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_sync.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_pkthandler.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rndv.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_eager.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_eagersync.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_win_fns.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_abort.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_cancel_recv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_cancel_send.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_disconnect.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_spawn_multiple.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_failure_ack.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_get_all_failed_procs.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_revoke.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_finalize.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_get_universe_size.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_getpname.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_improbe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_imrecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_init.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_iprobe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_irecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_irsend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_isend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_issend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_mprobe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_mrecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_port.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_probe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_recv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_rsend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_send.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_ssend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_startall.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_vc.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_rma.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_rma.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_aint.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_isend_self.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_pg.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_printf.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_finalize.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_init.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_isend.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_isendv.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_istartmsg.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_istartmsgv.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_progress.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_rma_shm.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3_win_fns.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3i_comm.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-ch3i_eagernoncontig.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_init.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_mpich.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_ckpt.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_finalize.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_network_poll.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_network.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_debug.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_lmt.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_lmt_shm.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_net_array.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_lmt_dma.lo CC src/mpid/ch3/channels/nemesis/src/lib_libmpi_la-mpid_nem_lmt_vmsplice.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-tcp_finalize.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-tcp_init.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-tcp_send.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-tcp_utility.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-socksm.lo CC src/mpid/ch3/channels/nemesis/netmod/tcp/lib_libmpi_la-tcp_ckpt.lo CC src/mpid/ch3/channels/nemesis/netmod/none/lib_libmpi_la-none.lo CC src/mpid/ch3/channels/nemesis/utils/monitor/lib_libmpi_la-papi_defs.lo CC src/mpid/ch3/channels/nemesis/utils/replacements/lib_libmpi_la-mkstemp.lo CC src/mpid/common/sched/lib_libmpi_la-mpidu_sched.lo CC src/mpid/common/shm/lib_libmpi_la-mpidu_shm_alloc.lo CC src/mpid/common/shm/lib_libmpi_la-mpidu_shm_barrier.lo CC src/nameserv/pmi/lib_libmpi_la-pmi_nameserv.lo CC src/pmi/simple/lib_libmpi_la-simple_pmiutil.lo CC src/pmi/simple/lib_libmpi_la-simple_pmi.lo MOD src/binding/fortran/use_mpi/mpi_constants.mod-stamp MOD src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp CXX src/binding/cxx/initcxx.lo CC src/env/mpichversion.o CC src/env/mpivars.o MOD src/binding/fortran/use_mpi/mpi_base.mod-stamp MOD src/binding/fortran/use_mpi/mpi.mod-stamp GEN lib/libmpi.la CXXLD lib/libmpicxx.la GEN lib/libmpifort.la CCLD src/env/mpichversion CCLD src/env/mpivars make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' Making all in examples make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' CC cpi.o CCLD cpi make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2'/usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/make install-recursive make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' Making install in src/mpl make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpl' Making install in src/openpa make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making install in src make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[4]: Nothing to be done for `install-exec-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making install in test make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[4]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/home/fbrarda/petsc/arch-opt/lib/pkgconfig' /usr/bin/install -c -m 644 openpa.pc '/home/fbrarda/petsc/arch-opt/lib/pkgconfig' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/openpa' Making install in src/hwloc make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making install in include make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[4]: Nothing to be done for `install-exec-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making install in hwloc make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' /usr/bin/make install-exec-hook make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[5]: Nothing to be done for `install-exec-hook'. make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[4]: Nothing to be done for `install-exec-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/hwloc' Making install in src/mpi/romio make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' mkdir -p '/home/fbrarda/petsc/arch-opt/include' /usr/bin/install -c -m 644 include/mpio.h include/mpiof.h '/home/fbrarda/petsc/arch-opt/include' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making install in src/pm/hydra make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making install in mpl make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making install in tools/topo/hwloc/hwloc make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in include make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Nothing to be done for `install-exec-am'. make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making install in hwloc make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' /usr/bin/make install-exec-hook make[6]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[6]: Nothing to be done for `install-exec-hook'. make[6]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Nothing to be done for `install-exec-am'. make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in . make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' mkdir -p '/home/fbrarda/petsc/arch-opt/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra '/home/fbrarda/petsc/arch-opt/bin' libtool: install: /usr/bin/install -c hydra_persist /home/fbrarda/petsc/arch-opt/bin/hydra_persist libtool: install: /usr/bin/install -c hydra_nameserver /home/fbrarda/petsc/arch-opt/bin/hydra_nameserver libtool: install: /usr/bin/install -c hydra_pmi_proxy /home/fbrarda/petsc/arch-opt/bin/hydra_pmi_proxy libtool: install: /usr/bin/install -c mpiexec.hydra /home/fbrarda/petsc/arch-opt/bin/mpiexec.hydra /usr/bin/make install-exec-hook make[5]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' if [ -x /home/fbrarda/petsc/arch-opt/bin/mpiexec.hydra ] ; then \ cd /home/fbrarda/petsc/arch-opt/bin && ln -f -s mpiexec.hydra mpiexec ; \ cd /home/fbrarda/petsc/arch-opt/bin && ln -f -s mpiexec.hydra mpirun ; \ fi make[5]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making install in . make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' mkdir -p '/home/fbrarda/petsc/arch-opt/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la '/home/fbrarda/petsc/arch-opt/lib' libtool: install: /usr/bin/install -c lib/.libs/libmpi.so.12.1.8 /home/fbrarda/petsc/arch-opt/lib/libmpi.so.12.1.8 libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpi.so.12.1.8 libmpi.so.12 || { rm -f libmpi.so.12 && ln -s libmpi.so.12.1.8 libmpi.so.12; }; }) libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpi.so.12.1.8 libmpi.so || { rm -f libmpi.so && ln -s libmpi.so.12.1.8 libmpi.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpi.lai /home/fbrarda/petsc/arch-opt/lib/libmpi.la libtool: install: (cd /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2; /bin/bash "/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/libtool" --silent --tag FC --mode=relink gfortran -Isrc/binding/fortran/use_mpi -fPIC -ffree-line-length-0 -g -O -O2 -version-info 13:8:1 -o lib/libmpifort.la -rpath /home/fbrarda/petsc/arch-opt/lib src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-exscanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-reducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-op_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-op_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allreducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-redscatf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_rankf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grouptranksf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_comparef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_unionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-groupinterf.lo 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src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-aint_addf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-aint_difff.lo src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_base.lo lib/libmpi.la ) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.so.12.1.8T /home/fbrarda/petsc/arch-opt/lib/libmpifort.so.12.1.8 libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpifort.so.12.1.8 libmpifort.so.12 || { rm -f libmpifort.so.12 && ln -s libmpifort.so.12.1.8 libmpifort.so.12; }; }) libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpifort.so.12.1.8 libmpifort.so || { rm -f libmpifort.so && ln -s libmpifort.so.12.1.8 libmpifort.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.lai /home/fbrarda/petsc/arch-opt/lib/libmpifort.la libtool: install: (cd /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2; /bin/bash "/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/libtool" --silent --tag CXX --mode=relink g++ -fstack-protector -g -O -fPIC -std=gnu++14 -O2 -version-info 13:8:1 -o lib/libmpicxx.la -rpath /home/fbrarda/petsc/arch-opt/lib src/binding/cxx/initcxx.lo lib/libmpi.la ) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.so.12.1.8T /home/fbrarda/petsc/arch-opt/lib/libmpicxx.so.12.1.8 libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpicxx.so.12.1.8 libmpicxx.so.12 || { rm -f libmpicxx.so.12 && ln -s libmpicxx.so.12.1.8 libmpicxx.so.12; }; }) libtool: install: (cd /home/fbrarda/petsc/arch-opt/lib && { ln -s -f libmpicxx.so.12.1.8 libmpicxx.so || { rm -f libmpicxx.so && ln -s libmpicxx.so.12.1.8 libmpicxx.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.lai /home/fbrarda/petsc/arch-opt/lib/libmpicxx.la libtool: install: /usr/bin/install -c lib/.libs/libmpi.a /home/fbrarda/petsc/arch-opt/lib/libmpi.a libtool: install: chmod 644 /home/fbrarda/petsc/arch-opt/lib/libmpi.a libtool: install: ranlib /home/fbrarda/petsc/arch-opt/lib/libmpi.a libtool: install: /usr/bin/install -c lib/.libs/libmpifort.a /home/fbrarda/petsc/arch-opt/lib/libmpifort.a libtool: install: chmod 644 /home/fbrarda/petsc/arch-opt/lib/libmpifort.a libtool: install: ranlib /home/fbrarda/petsc/arch-opt/lib/libmpifort.a libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.a /home/fbrarda/petsc/arch-opt/lib/libmpicxx.a libtool: install: chmod 644 /home/fbrarda/petsc/arch-opt/lib/libmpicxx.a libtool: install: ranlib /home/fbrarda/petsc/arch-opt/lib/libmpicxx.a libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/bin/anaconda2/bin:/opt/slurm/14.11.3/bin:/sbin" ldconfig -n /home/fbrarda/petsc/arch-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/fbrarda/petsc/arch-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- mkdir -p '/home/fbrarda/petsc/arch-opt/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c src/env/mpichversion src/env/mpivars '/home/fbrarda/petsc/arch-opt/bin' libtool: install: /usr/bin/install -c src/env/.libs/mpichversion /home/fbrarda/petsc/arch-opt/bin/mpichversion libtool: install: /usr/bin/install -c src/env/.libs/mpivars /home/fbrarda/petsc/arch-opt/bin/mpivars mkdir -p '/home/fbrarda/petsc/arch-opt/bin' /usr/bin/install -c src/env/mpicc src/env/parkill src/env/mpifort src/env/mpicxx '/home/fbrarda/petsc/arch-opt/bin' /usr/bin/make install-exec-hook make[4]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' for e in /home/fbrarda/petsc/arch-opt/bin/mpicc /home/fbrarda/petsc/arch-opt/bin/mpicxx \ /home/fbrarda/petsc/arch-opt/bin/mpif77 /home/fbrarda/petsc/arch-opt/bin/mpifort ; do \ if test -e ${e} ; then \ sed -e 's|__PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/fbrarda/petsc/arch-opt|g' \ -e 's|__EXEC_PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/fbrarda/petsc/arch-opt|g' \ -e 's|__SYSCONFDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/fbrarda/petsc/arch-opt/etc|g' \ -e 's|__INCLUDEDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/fbrarda/petsc/arch-opt/include|g' \ -e 's|__LIBDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/fbrarda/petsc/arch-opt/lib|g' ${e} > ${e}.tmp ; \ /usr/bin/install -c ${e}.tmp ${e} ; \ rm -f ${e}.tmp ; \ fi ; \ done ; \ if test -e /home/fbrarda/petsc/arch-opt/bin/mpicxx ; then \ if test "mpicxx" != "mpic++" ; then \ cd /home/fbrarda/petsc/arch-opt/bin && ln -f -s mpicxx mpic++ ; \ fi ; \ fi ; \ if test -e /home/fbrarda/petsc/arch-opt/bin/mpifort ; then \ if test "mpifort" != "mpif90" ; then \ cd /home/fbrarda/petsc/arch-opt/bin && ln -f -s mpifort mpif90 ; \ fi ; \ fi ; \ if test -e /home/fbrarda/petsc/arch-opt/bin/mpifort -a ! -e /home/fbrarda/petsc/arch-opt/bin/mpif77 ; then \ if test "mpifort" != "mpif77" ; then \ cd /home/fbrarda/petsc/arch-opt/bin && ln -f -s mpifort mpif77 ; \ fi ; \ fi ; \ if test -e /home/fbrarda/petsc/arch-opt/lib/libmpi.so ; then \ if test "mpi" != "mpl" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpi.so libmpl.so ; \ fi ; \ if test "mpi" != "opa" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpi.so libopa.so ; \ fi ; \ if test "mpi" != "mpich" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpi.so libmpich.so ; \ fi ; \ fi ; \ if test -e /home/fbrarda/petsc/arch-opt/lib/libmpifort.so ; then \ if test "mpifort" != "fmpich" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpifort.so libfmpich.so ; \ fi ; \ if test "mpifort" != "mpichf90" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpifort.so libmpichf90.so ; \ fi ; \ fi ; \ if test -e /home/fbrarda/petsc/arch-opt/lib/libmpicxx.so ; then \ if test "mpicxx" != "mpichcxx" ; then \ cd /home/fbrarda/petsc/arch-opt/lib && ln -f -s libmpicxx.so libmpichcxx.so ; \ fi ; \ fi make[4]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' /usr/bin/install -c -m 644 hydra_nameserver.1 /home/fbrarda/petsc/arch-opt/share/man/man1/hydra_nameserver.1 /usr/bin/install -c -m 644 hydra_persist.1 /home/fbrarda/petsc/arch-opt/share/man/man1/hydra_persist.1 /usr/bin/install -c -m 644 hydra_pmi_proxy.1 /home/fbrarda/petsc/arch-opt/share/man/man1/hydra_pmi_proxy.1 /usr/bin/install -c -m 644 mpicc.1 /home/fbrarda/petsc/arch-opt/share/man/man1/mpicc.1 /usr/bin/install -c -m 644 mpicxx.1 /home/fbrarda/petsc/arch-opt/share/man/man1/mpicxx.1 /usr/bin/install -c -m 644 mpiexec.1 /home/fbrarda/petsc/arch-opt/share/man/man1/mpiexec.1 /usr/bin/install -c -m 644 mpif77.1 /home/fbrarda/petsc/arch-opt/share/man/man1/mpif77.1 /usr/bin/install -c -m 644 mpifort.1 /home/fbrarda/petsc/arch-opt/share/man/man1/mpifort.1 /usr/bin/install -c -m 644 Constants.3 /home/fbrarda/petsc/arch-opt/share/man/man3/Constants.3 /usr/bin/install -c -m 644 MPI_Abort.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Abort.3 /usr/bin/install -c -m 644 MPI_Accumulate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Accumulate.3 /usr/bin/install -c -m 644 MPI_Add_error_class.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Add_error_class.3 /usr/bin/install -c -m 644 MPI_Add_error_code.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Add_error_code.3 /usr/bin/install -c -m 644 MPI_Add_error_string.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Add_error_string.3 /usr/bin/install -c -m 644 MPI_Address.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Address.3 /usr/bin/install -c -m 644 MPI_Aint_add.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Aint_add.3 /usr/bin/install -c -m 644 MPI_Aint_diff.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Aint_diff.3 /usr/bin/install -c -m 644 MPI_Allgather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Allgather.3 /usr/bin/install -c -m 644 MPI_Allgatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Allgatherv.3 /usr/bin/install -c -m 644 MPI_Alloc_mem.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Alloc_mem.3 /usr/bin/install -c -m 644 MPI_Allreduce.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Allreduce.3 /usr/bin/install -c -m 644 MPI_Alltoall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Alltoall.3 /usr/bin/install -c -m 644 MPI_Alltoallv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Alltoallv.3 /usr/bin/install -c -m 644 MPI_Alltoallw.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Alltoallw.3 /usr/bin/install -c -m 644 MPI_Attr_delete.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Attr_delete.3 /usr/bin/install -c -m 644 MPI_Attr_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Attr_get.3 /usr/bin/install -c -m 644 MPI_Attr_put.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Attr_put.3 /usr/bin/install -c -m 644 MPI_Barrier.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Barrier.3 /usr/bin/install -c -m 644 MPI_Bcast.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Bcast.3 /usr/bin/install -c -m 644 MPI_Bsend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Bsend.3 /usr/bin/install -c -m 644 MPI_Bsend_init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Bsend_init.3 /usr/bin/install -c -m 644 MPI_Buffer_attach.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Buffer_attach.3 /usr/bin/install -c -m 644 MPI_Buffer_detach.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Buffer_detach.3 /usr/bin/install -c -m 644 MPI_Cancel.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cancel.3 /usr/bin/install -c -m 644 MPI_Cart_coords.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_coords.3 /usr/bin/install -c -m 644 MPI_Cart_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_create.3 /usr/bin/install -c -m 644 MPI_Cartdim_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cartdim_get.3 /usr/bin/install -c -m 644 MPI_Cart_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_get.3 /usr/bin/install -c -m 644 MPI_Cart_map.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_map.3 /usr/bin/install -c -m 644 MPI_Cart_rank.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_rank.3 /usr/bin/install -c -m 644 MPI_Cart_shift.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_shift.3 /usr/bin/install -c -m 644 MPI_Cart_sub.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Cart_sub.3 /usr/bin/install -c -m 644 MPI_Close_port.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Close_port.3 /usr/bin/install -c -m 644 MPI_Comm_accept.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_accept.3 /usr/bin/install -c -m 644 MPI_Comm_call_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_compare.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_compare.3 /usr/bin/install -c -m 644 MPI_Comm_connect.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_connect.3 /usr/bin/install -c -m 644 MPI_Comm_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_create.3 /usr/bin/install -c -m 644 MPI_Comm_create_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_create_group.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_create_group.3 /usr/bin/install -c -m 644 MPI_Comm_create_keyval.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_create_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_delete_attr.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_delete_attr.3 /usr/bin/install -c -m 644 MPI_Comm_disconnect.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_disconnect.3 /usr/bin/install -c -m 644 MPI_Comm_dup.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_dup.3 /usr/bin/install -c -m 644 MPI_Comm_dup_with_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_dup_with_info.3 /usr/bin/install -c -m 644 MPI_Comm_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_free.3 /usr/bin/install -c -m 644 MPI_Comm_free_keyval.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_free_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_get_attr.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_get_attr.3 /usr/bin/install -c -m 644 MPI_Comm_get_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_get_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_get_info.3 /usr/bin/install -c -m 644 MPI_Comm_get_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_get_name.3 /usr/bin/install -c -m 644 MPI_Comm_get_parent.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_get_parent.3 /usr/bin/install -c -m 644 MPI_Comm_group.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_group.3 /usr/bin/install -c -m 644 MPI_Comm_idup.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_idup.3 /usr/bin/install -c -m 644 MPI_Comm_join.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_join.3 /usr/bin/install -c -m 644 MPI_Comm_rank.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_rank.3 /usr/bin/install -c -m 644 MPI_Comm_remote_group.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_remote_group.3 /usr/bin/install -c -m 644 MPI_Comm_remote_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_remote_size.3 /usr/bin/install -c -m 644 MPI_Comm_set_attr.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_set_attr.3 /usr/bin/install -c -m 644 MPI_Comm_set_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_set_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_set_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_set_info.3 /usr/bin/install -c -m 644 MPI_Comm_set_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_set_name.3 /usr/bin/install -c -m 644 MPI_Comm_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_size.3 /usr/bin/install -c -m 644 MPI_Comm_spawn.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_spawn.3 /usr/bin/install -c -m 644 MPI_Comm_spawn_multiple.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_spawn_multiple.3 /usr/bin/install -c -m 644 MPI_Comm_split.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_split.3 /usr/bin/install -c -m 644 MPI_Comm_split_type.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_split_type.3 /usr/bin/install -c -m 644 MPI_Comm_test_inter.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Comm_test_inter.3 /usr/bin/install -c -m 644 MPI_Compare_and_swap.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Compare_and_swap.3 /usr/bin/install -c -m 644 MPI_Dims_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Dims_create.3 /usr/bin/install -c -m 644 MPI_Dist_graph_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Dist_graph_create.3 /usr/bin/install -c -m 644 MPI_Dist_graph_create_adjacent.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Dist_graph_create_adjacent.3 /usr/bin/install -c -m 644 MPI_Dist_graph_neighbors.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Dist_graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Dist_graph_neighbors_count.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Dist_graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Errhandler_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Errhandler_create.3 /usr/bin/install -c -m 644 MPI_Errhandler_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Errhandler_free.3 /usr/bin/install -c -m 644 MPI_Errhandler_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Errhandler_get.3 /usr/bin/install -c -m 644 MPI_Errhandler_set.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Errhandler_set.3 /usr/bin/install -c -m 644 MPI_Error_class.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Error_class.3 /usr/bin/install -c -m 644 MPI_Error_string.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Error_string.3 /usr/bin/install -c -m 644 MPI_Exscan.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Exscan.3 /usr/bin/install -c -m 644 MPI_Fetch_and_op.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Fetch_and_op.3 /usr/bin/install -c -m 644 MPI_File_c2f.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_c2f.3 /usr/bin/install -c -m 644 MPI_File_call_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_call_errhandler.3 /usr/bin/install -c -m 644 MPI_File_close.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_close.3 /usr/bin/install -c -m 644 MPI_File_create_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_create_errhandler.3 /usr/bin/install -c -m 644 MPI_File_delete.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_delete.3 /usr/bin/install -c -m 644 MPI_File_f2c.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_f2c.3 /usr/bin/install -c -m 644 MPI_File_get_amode.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_amode.3 /usr/bin/install -c -m 644 MPI_File_get_atomicity.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_atomicity.3 /usr/bin/install -c -m 644 MPI_File_get_byte_offset.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_byte_offset.3 /usr/bin/install -c -m 644 MPI_File_get_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_errhandler.3 /usr/bin/install -c -m 644 MPI_File_get_group.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_group.3 /usr/bin/install -c -m 644 MPI_File_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_info.3 /usr/bin/install -c -m 644 MPI_File_get_position.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_position.3 /usr/bin/install -c -m 644 MPI_File_get_position_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_position_shared.3 /usr/bin/install -c -m 644 MPI_File_get_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_size.3 /usr/bin/install -c -m 644 MPI_File_get_type_extent.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_type_extent.3 /usr/bin/install -c -m 644 MPI_File_get_view.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_get_view.3 /usr/bin/install -c -m 644 MPI_File_iread.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iread.3 /usr/bin/install -c -m 644 MPI_File_iread_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iread_all.3 /usr/bin/install -c -m 644 MPI_File_iread_at.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iread_at.3 /usr/bin/install -c -m 644 MPI_File_iread_at_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iread_at_all.3 /usr/bin/install -c -m 644 MPI_File_iread_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iread_shared.3 /usr/bin/install -c -m 644 MPI_File_iwrite.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iwrite.3 /usr/bin/install -c -m 644 MPI_File_iwrite_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iwrite_all.3 /usr/bin/install -c -m 644 MPI_File_iwrite_at.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iwrite_at.3 /usr/bin/install -c -m 644 MPI_File_iwrite_at_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iwrite_at_all.3 /usr/bin/install -c -m 644 MPI_File_iwrite_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_iwrite_shared.3 /usr/bin/install -c -m 644 MPI_File_open.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_open.3 /usr/bin/install -c -m 644 MPI_File_preallocate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_preallocate.3 /usr/bin/install -c -m 644 MPI_File_read.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read.3 /usr/bin/install -c -m 644 MPI_File_read_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_all.3 /usr/bin/install -c -m 644 MPI_File_read_all_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_all_begin.3 /usr/bin/install -c -m 644 MPI_File_read_all_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_all_end.3 /usr/bin/install -c -m 644 MPI_File_read_at.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_at.3 /usr/bin/install -c -m 644 MPI_File_read_at_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_at_all.3 /usr/bin/install -c -m 644 MPI_File_read_at_all_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_read_at_all_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_read_ordered.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_ordered.3 /usr/bin/install -c -m 644 MPI_File_read_ordered_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_ordered_begin.3 /usr/bin/install -c -m 644 MPI_File_read_ordered_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_ordered_end.3 /usr/bin/install -c -m 644 MPI_File_read_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_read_shared.3 /usr/bin/install -c -m 644 MPI_File_seek.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_seek.3 /usr/bin/install -c -m 644 MPI_File_seek_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_seek_shared.3 /usr/bin/install -c -m 644 MPI_File_set_atomicity.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_set_atomicity.3 /usr/bin/install -c -m 644 MPI_File_set_errhandler.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_set_errhandler.3 /usr/bin/install -c -m 644 MPI_File_set_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_set_info.3 /usr/bin/install -c -m 644 MPI_File_set_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_set_size.3 /usr/bin/install -c -m 644 MPI_File_set_view.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_set_view.3 /usr/bin/install -c -m 644 MPI_File_sync.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_sync.3 /usr/bin/install -c -m 644 MPI_File_write.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write.3 /usr/bin/install -c -m 644 MPI_File_write_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_all.3 /usr/bin/install -c -m 644 MPI_File_write_all_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_all_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_at.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_at.3 /usr/bin/install -c -m 644 MPI_File_write_at_all.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_at_all.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_ordered.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_ordered.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_begin.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_ordered_begin.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_end.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_ordered_end.3 /usr/bin/install -c -m 644 MPI_File_write_shared.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_File_write_shared.3 /usr/bin/install -c -m 644 MPI_Finalize.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Finalize.3 /usr/bin/install -c -m 644 MPI_Finalized.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Finalized.3 /usr/bin/install -c -m 644 MPI_Free_mem.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Free_mem.3 /usr/bin/install -c -m 644 MPI_Gather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Gather.3 /usr/bin/install -c -m 644 MPI_Gatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Gatherv.3 /usr/bin/install -c -m 644 MPI_Get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get.3 /usr/bin/install -c -m 644 MPI_Get_accumulate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_accumulate.3 /usr/bin/install -c -m 644 MPI_Get_address.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_address.3 /usr/bin/install -c -m 644 MPI_Get_count.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_count.3 /usr/bin/install -c -m 644 MPI_Get_elements.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_elements.3 /usr/bin/install -c -m 644 MPI_Get_elements_x.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_elements_x.3 /usr/bin/install -c -m 644 MPI_Get_library_version.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_library_version.3 /usr/bin/install -c -m 644 MPI_Get_processor_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_processor_name.3 /usr/bin/install -c -m 644 MPI_Get_version.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Get_version.3 /usr/bin/install -c -m 644 MPI_Graph_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graph_create.3 /usr/bin/install -c -m 644 MPI_Graphdims_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graphdims_get.3 /usr/bin/install -c -m 644 MPI_Graph_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graph_get.3 /usr/bin/install -c -m 644 MPI_Graph_map.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graph_map.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors_count.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Grequest_complete.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Grequest_complete.3 /usr/bin/install -c -m 644 MPI_Grequest_start.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Grequest_start.3 /usr/bin/install -c -m 644 MPI_Group_compare.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_compare.3 /usr/bin/install -c -m 644 MPI_Group_difference.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_difference.3 /usr/bin/install -c -m 644 MPI_Group_excl.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_excl.3 /usr/bin/install -c -m 644 MPI_Group_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_free.3 /usr/bin/install -c -m 644 MPI_Group_incl.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_incl.3 /usr/bin/install -c -m 644 MPI_Group_intersection.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_intersection.3 /usr/bin/install -c -m 644 MPI_Group_range_excl.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_range_excl.3 /usr/bin/install -c -m 644 MPI_Group_range_incl.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_range_incl.3 /usr/bin/install -c -m 644 MPI_Group_rank.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_rank.3 /usr/bin/install -c -m 644 MPI_Group_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_size.3 /usr/bin/install -c -m 644 MPI_Group_translate_ranks.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_translate_ranks.3 /usr/bin/install -c -m 644 MPI_Group_union.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Group_union.3 /usr/bin/install -c -m 644 MPI_Iallgather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iallgather.3 /usr/bin/install -c -m 644 MPI_Iallgatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iallgatherv.3 /usr/bin/install -c -m 644 MPI_Iallreduce.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iallreduce.3 /usr/bin/install -c -m 644 MPI_Ialltoall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ialltoall.3 /usr/bin/install -c -m 644 MPI_Ialltoallv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ialltoallv.3 /usr/bin/install -c -m 644 MPI_Ialltoallw.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ialltoallw.3 /usr/bin/install -c -m 644 MPI_Ibarrier.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ibarrier.3 /usr/bin/install -c -m 644 MPI_Ibcast.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ibcast.3 /usr/bin/install -c -m 644 MPI_Ibsend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ibsend.3 /usr/bin/install -c -m 644 MPI_Iexscan.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iexscan.3 /usr/bin/install -c -m 644 MPI_Igather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Igather.3 /usr/bin/install -c -m 644 MPI_Igatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Igatherv.3 /usr/bin/install -c -m 644 MPI_Improbe.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Improbe.3 /usr/bin/install -c -m 644 MPI_Imrecv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Imrecv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ineighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ineighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ineighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ineighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallw.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ineighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Info_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_create.3 /usr/bin/install -c -m 644 MPI_Info_delete.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_delete.3 /usr/bin/install -c -m 644 MPI_Info_dup.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_dup.3 /usr/bin/install -c -m 644 MPI_Info_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_free.3 /usr/bin/install -c -m 644 MPI_Info_get.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_get.3 /usr/bin/install -c -m 644 MPI_Info_get_nkeys.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_get_nkeys.3 /usr/bin/install -c -m 644 MPI_Info_get_nthkey.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_get_nthkey.3 /usr/bin/install -c -m 644 MPI_Info_get_valuelen.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_get_valuelen.3 /usr/bin/install -c -m 644 MPI_Info_set.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Info_set.3 /usr/bin/install -c -m 644 MPI_Init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Init.3 /usr/bin/install -c -m 644 MPI_Initialized.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Initialized.3 /usr/bin/install -c -m 644 MPI_Init_thread.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Init_thread.3 /usr/bin/install -c -m 644 MPI_Intercomm_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Intercomm_create.3 /usr/bin/install -c -m 644 MPI_Intercomm_merge.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Intercomm_merge.3 /usr/bin/install -c -m 644 MPI_Iprobe.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iprobe.3 /usr/bin/install -c -m 644 MPI_Irecv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Irecv.3 /usr/bin/install -c -m 644 MPI_Ireduce.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ireduce.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ireduce_scatter.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter_block.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ireduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Irsend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Irsend.3 /usr/bin/install -c -m 644 MPI_Iscan.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iscan.3 /usr/bin/install -c -m 644 MPI_Iscatter.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iscatter.3 /usr/bin/install -c -m 644 MPI_Iscatterv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Iscatterv.3 /usr/bin/install -c -m 644 MPI_Isend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Isend.3 /usr/bin/install -c -m 644 MPI_Issend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Issend.3 /usr/bin/install -c -m 644 MPI_Is_thread_main.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Is_thread_main.3 /usr/bin/install -c -m 644 MPI_Keyval_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Keyval_create.3 /usr/bin/install -c -m 644 MPI_Keyval_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Keyval_free.3 /usr/bin/install -c -m 644 MPI_Lookup_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Lookup_name.3 /usr/bin/install -c -m 644 MPI_Mprobe.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Mprobe.3 /usr/bin/install -c -m 644 MPI_Mrecv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Mrecv.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgather.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Neighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgatherv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Neighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Neighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Neighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallw.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Neighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Op_commute.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Op_commute.3 /usr/bin/install -c -m 644 MPI_Op_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Op_create.3 /usr/bin/install -c -m 644 MPI_Open_port.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Open_port.3 /usr/bin/install -c -m 644 MPI_Op_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Op_free.3 /usr/bin/install -c -m 644 MPI_Pack.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Pack.3 /usr/bin/install -c -m 644 MPI_Pack_external.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Pack_external.3 /usr/bin/install -c -m 644 MPI_Pack_external_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Pack_external_size.3 /usr/bin/install -c -m 644 MPI_Pack_size.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Pack_size.3 /usr/bin/install -c -m 644 MPI_Pcontrol.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Pcontrol.3 /usr/bin/install -c -m 644 MPI_Probe.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Probe.3 /usr/bin/install -c -m 644 MPI_Publish_name.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Publish_name.3 /usr/bin/install -c -m 644 MPI_Put.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Put.3 /usr/bin/install -c -m 644 MPI_Query_thread.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Query_thread.3 /usr/bin/install -c -m 644 MPI_Raccumulate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Raccumulate.3 /usr/bin/install -c -m 644 MPI_Recv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Recv.3 /usr/bin/install -c -m 644 MPI_Recv_init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Recv_init.3 /usr/bin/install -c -m 644 MPI_Reduce.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Reduce.3 /usr/bin/install -c -m 644 MPI_Reduce_local.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Reduce_local.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Reduce_scatter.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter_block.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Reduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Register_datarep.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Register_datarep.3 /usr/bin/install -c -m 644 MPI_Request_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Request_free.3 /usr/bin/install -c -m 644 MPI_Request_get_status.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Request_get_status.3 /usr/bin/install -c -m 644 MPI_Rget.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Rget.3 /usr/bin/install -c -m 644 MPI_Rget_accumulate.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Rget_accumulate.3 /usr/bin/install -c -m 644 MPI_Rput.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Rput.3 /usr/bin/install -c -m 644 MPI_Rsend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Rsend.3 /usr/bin/install -c -m 644 MPI_Rsend_init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Rsend_init.3 /usr/bin/install -c -m 644 MPIR_Type_commit.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_commit.3 /usr/bin/install -c -m 644 MPIR_Type_contiguous.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_contiguous.3 /usr/bin/install -c -m 644 MPIR_Type_dup.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_dup.3 /usr/bin/install -c -m 644 MPIR_Type_get_contents.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_get_contents.3 /usr/bin/install -c -m 644 MPIR_Type_indexed.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_indexed.3 /usr/bin/install -c -m 644 MPIR_Type_struct.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_struct.3 /usr/bin/install -c -m 644 MPIR_Type_vector.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPIR_Type_vector.3 /usr/bin/install -c -m 644 MPI_Scan.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Scan.3 /usr/bin/install -c -m 644 MPI_Scatter.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Scatter.3 /usr/bin/install -c -m 644 MPI_Scatterv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Scatterv.3 /usr/bin/install -c -m 644 MPI_Send.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Send.3 /usr/bin/install -c -m 644 MPI_Send_init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Send_init.3 /usr/bin/install -c -m 644 MPI_Sendrecv.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Sendrecv.3 /usr/bin/install -c -m 644 MPI_Sendrecv_replace.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Sendrecv_replace.3 /usr/bin/install -c -m 644 MPI_Ssend.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ssend.3 /usr/bin/install -c -m 644 MPI_Ssend_init.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Ssend_init.3 /usr/bin/install -c -m 644 MPI_Start.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Start.3 /usr/bin/install -c -m 644 MPI_Startall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Startall.3 /usr/bin/install -c -m 644 MPI_Status_set_cancelled.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Status_set_cancelled.3 /usr/bin/install -c -m 644 MPI_Status_set_elements.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Status_set_elements.3 /usr/bin/install -c -m 644 MPI_Status_set_elements_x.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Status_set_elements_x.3 /usr/bin/install -c -m 644 MPI_T_category_changed.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_changed.3 /usr/bin/install -c -m 644 MPI_T_category_get_categories.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_categories.3 /usr/bin/install -c -m 644 MPI_T_category_get_cvars.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_cvars.3 /usr/bin/install -c -m 644 MPI_T_category_get_index.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_index.3 /usr/bin/install -c -m 644 MPI_T_category_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_info.3 /usr/bin/install -c -m 644 MPI_T_category_get_num.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_num.3 /usr/bin/install -c -m 644 MPI_T_category_get_pvars.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_category_get_pvars.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_index.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_get_index.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_num.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_alloc.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_cvar_read.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_read.3 /usr/bin/install -c -m 644 MPI_T_cvar_write.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_cvar_write.3 /usr/bin/install -c -m 644 MPI_T_enum_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_enum_get_info.3 /usr/bin/install -c -m 644 MPI_T_enum_get_item.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_enum_get_item.3 /usr/bin/install -c -m 644 MPI_Test.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Test.3 /usr/bin/install -c -m 644 MPI_Testall.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Testall.3 /usr/bin/install -c -m 644 MPI_Testany.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Testany.3 /usr/bin/install -c -m 644 MPI_Test_cancelled.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Test_cancelled.3 /usr/bin/install -c -m 644 MPI_Testsome.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Testsome.3 /usr/bin/install -c -m 644 MPI_T_finalize.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_finalize.3 /usr/bin/install -c -m 644 MPI_T_init_thread.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_init_thread.3 /usr/bin/install -c -m 644 MPI_Topo_test.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Topo_test.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_index.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_get_index.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_info.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_num.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_alloc.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_pvar_read.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_read.3 /usr/bin/install -c -m 644 MPI_T_pvar_readreset.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_readreset.3 /usr/bin/install -c -m 644 MPI_T_pvar_reset.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_reset.3 /usr/bin/install -c -m 644 MPI_T_pvar_session_create.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_session_create.3 /usr/bin/install -c -m 644 MPI_T_pvar_session_free.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_session_free.3 /usr/bin/install -c -m 644 MPI_T_pvar_start.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_start.3 /usr/bin/install -c -m 644 MPI_T_pvar_stop.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_stop.3 /usr/bin/install -c -m 644 MPI_T_pvar_write.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_T_pvar_write.3 /usr/bin/install -c -m 644 MPI_Type_commit.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_commit.3 /usr/bin/install -c -m 644 MPI_Type_contiguous.3 /home/fbrarda/petsc/arch-opt/share/man/man3/MPI_Type_contiguous.3 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/home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_create_keyval.html /usr/bin/install -c -m 644 MPI_Win_delete_attr.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_delete_attr.html /usr/bin/install -c -m 644 MPI_Win_detach.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_detach.html /usr/bin/install -c -m 644 MPI_WIN_DISP_UNIT.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_DISP_UNIT.htm /usr/bin/install -c -m 644 MPI_WIN_DUP_FN.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_DUP_FN.htm /usr/bin/install -c -m 644 MPI_Win_fence.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_fence.html /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_ALLOCATE.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_ALLOCATE.htm /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_CREATE.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_CREATE.htm /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_DYNAMIC.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_DYNAMIC.htm /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_SHARED.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_SHARED.htm /usr/bin/install -c -m 644 MPI_Win_flush_all.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_flush_all.html /usr/bin/install -c -m 644 MPI_Win_flush.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_flush.html /usr/bin/install -c -m 644 MPI_Win_flush_local_all.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_flush_local_all.html /usr/bin/install -c -m 644 MPI_Win_flush_local.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_flush_local.html /usr/bin/install -c -m 644 MPI_Win_free.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_free.html /usr/bin/install -c -m 644 MPI_Win_free_keyval.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_free_keyval.html /usr/bin/install -c -m 644 MPI_Win_get_attr.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_get_attr.html /usr/bin/install -c -m 644 MPI_Win_get_errhandler.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_get_errhandler.html /usr/bin/install -c -m 644 MPI_Win_get_group.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_get_group.html /usr/bin/install -c -m 644 MPI_Win_get_info.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_get_info.html /usr/bin/install -c -m 644 MPI_Win_get_name.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_get_name.html /usr/bin/install -c -m 644 MPI_Win_lock_all.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_lock_all.html /usr/bin/install -c -m 644 MPI_Win_lock.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_lock.html /usr/bin/install -c -m 644 MPI_WIN_MODEL.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_MODEL.htm /usr/bin/install -c -m 644 MPI_WIN_NULL_COPY_FN.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_NULL_COPY_FN.htm /usr/bin/install -c -m 644 MPI_WIN_NULL_DELETE_FN.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_NULL_DELETE_FN.htm /usr/bin/install -c -m 644 MPI_WIN_NULL.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_NULL.htm /usr/bin/install -c -m 644 MPI_Win_post.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_post.html /usr/bin/install -c -m 644 MPI_WIN_SEPARATE.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_SEPARATE.htm /usr/bin/install -c -m 644 MPI_Win_set_attr.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_set_attr.html /usr/bin/install -c -m 644 MPI_Win_set_errhandler.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_set_errhandler.html /usr/bin/install -c -m 644 MPI_Win_set_info.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_set_info.html /usr/bin/install -c -m 644 MPI_Win_set_name.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_set_name.html /usr/bin/install -c -m 644 MPI_Win_shared_query.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_shared_query.html /usr/bin/install -c -m 644 MPI_WIN_SIZE.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_SIZE.htm /usr/bin/install -c -m 644 MPI_Win_start.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_start.html /usr/bin/install -c -m 644 MPI_Win_sync.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_sync.html /usr/bin/install -c -m 644 MPI_Win_test.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_test.html /usr/bin/install -c -m 644 MPI_WIN_UNIFIED.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WIN_UNIFIED.htm /usr/bin/install -c -m 644 MPI_Win_unlock_all.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_unlock_all.html /usr/bin/install -c -m 644 MPI_Win_unlock.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_unlock.html /usr/bin/install -c -m 644 MPI_Win_wait.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Win_wait.html /usr/bin/install -c -m 644 MPI_Wtick.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Wtick.html /usr/bin/install -c -m 644 MPI_Wtime.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_Wtime.html /usr/bin/install -c -m 644 MPI_WTIME_IS_GLOBAL.htm /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPI_WTIME_IS_GLOBAL.htm /usr/bin/install -c -m 644 MPIX_Comm_agree.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPIX_Comm_agree.html /usr/bin/install -c -m 644 MPIX_Comm_failure_ack.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPIX_Comm_failure_ack.html /usr/bin/install -c -m 644 MPIX_Comm_failure_get_acked.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPIX_Comm_failure_get_acked.html /usr/bin/install -c -m 644 MPIX_Comm_revoke.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPIX_Comm_revoke.html /usr/bin/install -c -m 644 MPIX_Comm_shrink.html /home/fbrarda/petsc/arch-opt/share/doc/mpich/www3/MPIX_Comm_shrink.html if [ ! -e /home/fbrarda/petsc/arch-opt/share/doc/mpich ] ; then mkdir -p /home/fbrarda/petsc/arch-opt/share/doc/mpich ; fi if [ -s ./doc/userguide/user.pdf ] ; then /usr/bin/install -c -m 644 ./doc/userguide/user.pdf /home/fbrarda/petsc/arch-opt/share/doc/mpich/user.pdf ; fi if [ -s ./doc/installguide/install.pdf ] ; then /usr/bin/install -c -m 644 ./doc/installguide/install.pdf /home/fbrarda/petsc/arch-opt/share/doc/mpich/install.pdf ; fi if [ -s ./doc/logging/logging.pdf ] ; then /usr/bin/install -c -m 644 ./doc/logging/logging.pdf /home/fbrarda/petsc/arch-opt/share/doc/mpich/logging.pdf ; fi mkdir -p '/home/fbrarda/petsc/arch-opt/include' /usr/bin/install -c -m 644 src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod '/home/fbrarda/petsc/arch-opt/include' mkdir -p '/home/fbrarda/petsc/arch-opt/include' /usr/bin/install -c -m 644 src/binding/cxx/mpicxx.h src/binding/fortran/mpif_h/mpif.h src/include/mpi.h '/home/fbrarda/petsc/arch-opt/include' mkdir -p '/home/fbrarda/petsc/arch-opt/lib/pkgconfig' /usr/bin/install -c -m 644 src/packaging/pkgconfig/mpich.pc '/home/fbrarda/petsc/arch-opt/lib/pkgconfig' make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2' Making install in examples make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2/examples' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2'libtool: warning: relinking 'lib/libmpifort.la' libtool: warning: relinking 'lib/libmpicxx.la' ********End of Output of running make on MPICH ******* Deleting "CC" Deleting "CXX" Deleting "FC" ================================================================================ TEST printEnvVariables from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1907) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1907) **** printenv **** MODULESHOME=/opt/Modules/3.2.10 BASH_FUNC_module%%=() { eval `/opt/Modules/$MODULE_VERSION/bin/modulecmd bash $*` } _=./configure MODULEPATH=/opt/Modules/versions/:/opt/Modules/$MODULE_VERSION/modulefiles SHLVL=1 SHELL=/bin/bash LOGNAME=fbrarda LANGUAGE=en_US:en MODULE_VERSION_STACK=3.2.10 PWD=/home/fbrarda/petsc LESSOPEN=| /usr/bin/lesspipe %s SSH_CLIENT=10.112.0.1 51280 22 TERM=xterm-256color MAIL=/var/mail/fbrarda USER=fbrarda PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/bin/anaconda2/bin:/opt/slurm/14.11.3/bin XDG_SESSION_ID=5874 SINFO_FORMAT=%10P %.5a %.12l %.8D %.6t %.10N %.7G %.15C LOADEDMODULES= CONDA_SHLVL=0 SQUEUE_FORMAT=%8i %15u %.9P %.14j %.8T %.12M %.4D %.3C %.8b %.20e %r LD_LIBRARY_PATH=:/opt/slurm/14.11.3/lib:/home/fbrarda/petsc/arch-opt/lib CPATH=:/opt/slurm/14.11.3/include/slurm OLDPWD=/home/fbrarda HOME=/home/fbrarda LIBRARY_PATH=:/opt/slurm/14.11.3/lib SSH_TTY=/dev/pts/1 SSH_CONNECTION=10.112.0.1 51280 10.112.10.5 22 XDG_RUNTIME_DIR=/run/user/1012 LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36: MODULE_VERSION=3.2.10 LANG=en_US.UTF-8 LESSCLOSE=/usr/bin/lesspipe %s %s ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1914) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1914) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1944) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1944) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1877) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1877) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1898) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1898) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:479) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:479) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPCCFLAGS to Initialized HIPCCFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPCC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:660) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:660) Locate a functional C compiler Checking for program /home/fbrarda/petsc/arch-opt/bin/mpicc...found Defined make macro "CC" to "/home/fbrarda/petsc/arch-opt/bin/mpicc" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Testing executable /tmp/petsc-l6ax4d0t/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc --version stdout: gcc (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:699) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:699) Locate a functional C preprocessor Checking for program /home/fbrarda/petsc/arch-opt/bin/mpicc...found Defined make macro "CPP" to "/home/fbrarda/petsc/arch-opt/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:735) Locate a functional CUDA compiler Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/local/games/nvcc...not found Checking for program /usr/bin/anaconda2/bin/nvcc...not found Checking for program /opt/slurm/14.11.3/bin/nvcc...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 'g_anaeig', 'lwp-mirror', 'lesspipe', 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'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:775) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:775) Locate a functional CUDA preprocessor ================================================================================ TEST checkHIPCompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:809) TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:809) Locate a functional HIP compiler Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /sbin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /usr/games/hipcc...not found Checking for program /usr/local/games/hipcc...not found Checking for program /usr/bin/anaconda2/bin/hipcc...not found Checking for program /opt/slurm/14.11.3/bin/hipcc...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/hipcc...not found Unable to find programs ['hipcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 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'groff', 'gpg-zip', 'awk', 'nvidia-bug-report.sh', 'g_spol', 'ddd', 'ompi-top', 'grotty', 'x86_64-linux-gnu-ranlib', 'nstat', 'gen-preseed', 'xkill', 'bsd-write', 'gcore', 'linux-check-removal', 'atrm', 'lessfile', 'dh_auto_build', 'pdf2dsc', 'mysql_plugin', 'cpp-4.9', 'getopt', 'lsattr', 'glib-compile-schemas', 'debugapp', 'libtool', 'xwininfo', 'nano', 'lli-child-target-3.5', 'newaliases', 'x86_64-linux-gnu-gcc-ar-5', 'ptx', 'genconf_d', 'g_potential_d', 'llvm-dis', 'perlbug', 'watch', 'cpp-4.8', 'autogsdoc', 'gcc-ar-4.9', 'vim', 'piconv', 'obrotamer', 'localectl', 'g_angle', 'docker-init', 'byobu-launcher-install', 'munindoc', 'plget', 'ps2ascii', 'obspectrophore', 'obabel', 'mandb', 'as', 'mdrun', 'gtester-report', 'dh_installlogcheck', 'dh_installgsettings', 'volname', 'msgexec', 'byobu-status', 'cal', 'g_sans', 'ompi-ps', 'g_mindist_d', 'g_spatial', 'g_chi', 'ischroot', 'g_chi_d', 'split', 'lsusb', 'rstudio', 'x86_64-linux-gnu-g++-4.8', 'g_sas_d', 'mpic++.openmpi', 'm17n-db', 'xterm', 'json_pp', 'dh_scrollkeeper', 'gvimtutor', 'perldoc', 'ntpq', 'poff', 'ex', 'llvm-stress-3.4', 'gs', 'pon', 'gcc-nm-4.9', 'dh_installifupdown', 'dh_ucf', 'report-hw', 'docker-containerd', 'xkbcomp', 'ubuntu-bug', 'getkeycodes', 'obconf', 'docker-proxy', 'g_dielectric', 'g_current', 'g_select', 'gprof', 'dgawk', 'babel', 'loadunimap', 'erb', 'dockerd', 'pkttyagent', 'demux', 'perlivp', 'dh_strip', 'cmp', 'g_luck', 'g_bar_d', 'make_strings', 'myisampack', 'ar', 'x86_64-linux-gnu-g++', 'lsipc', 'rpm2cpio', 'c89-gcc', 'apt-config', 'ngmx_d', 'patch', 'xpm2ps', 'rename', 'peekfd', 'xsetroot', 'fc-list', 'mysql_config', 'aspell-import', 'zeitgeist-datahub', 'ssh-import-id-gh', 'llvm-config', 'genrestr', 'ssh-import-id-lp', 'mysql_zap', 'ssh-keyscan', 'gettext.sh', 'openbox', 'g_h2order', 'eview', 'deb-systemd-invoke', 'grub-glue-efi', 'htop', 'unexpand', 'macho-dump-3.5', 'expr', 'gcc-4.9', 'g_densorder', 'cpan5.22-x86_64-linux-gnu', 'g_densmap_d', 'from', 'llvm-diff-3.5', 'xstdcmap', 'autoreconf', 'x86_64-linux-gnu-cpp-4.9', 'plog', 'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /sbin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /usr/games/opt/rocm/bin/hipcc...not found Checking for program /usr/local/games/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/anaconda2/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/slurm/14.11.3/bin/opt/rocm/bin/hipcc...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found Unable to find programs ['opt/rocm/bin/hipcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 'g_anaeig', 'lwp-mirror', 'lesspipe', 'dpkg-query', 'enchant', 'g_select_d', 'lspgpot', 'telnet', 'py3clean', 'dh_fixperms', 'g_rotmat_d', 'autogen', 'ompi-server', 'pygettext3', 'pdb3.4', 'chattr', 'printenv', 'ngettext', 'preconv', 'ldd', 'dpkg-source', 'gedit', 'g_lie', 'rpm', 'unlzma', 'xxd', 'uxterm', 'obminimize', 'clang-check-3.5', 'printf', 'g_confrms_d', 'top', 'ssh-agent', 'lsb_release', 'dbus-launch', 'setarch', 'grub-mkrelpath', 'x86_64-linux-gnu-gfortran-4.8', 'dpkg-split', 'on_ac_power', 'genbox_d', 'iceauth', 'g_spol_d', 'xlsclients', 'dh_installxfonts', 'sfparse', 'x86_64-linux-gnu-cpp-4.8', 'dotlockfile', 'wpa_passphrase', 'pldd', 'mysql_fix_extensions', 'gdebi', 'g_sorient_d', 'x86_64-linux-gnu-python-config', 'dh_pypy', 'dpkg-gencontrol', 'xpm2ps_d', 'orted', 'llvm-as-3.4', 'llvm-mc-3.4', 'emacs', 'splain', 'g_nmeig_d', 'aptitude-run-state-bundle', 'trjcat', 'aptitude-create-state-bundle', 'ncursesw5-config', 'f2py2.7', 'icu-config', 'gslj', 'info', 'etags', 'byobu-tmux', 'intltoolize', '*', 'dh_suidregister', 'pycompile', 'xfd', 'msgunfmt', 'gtbl', 'ri1.9.1', 'gracebat', 'git-shell', 'loadkeys', 'x86_64-linux-gnu-objdump', 'gcc-ar', 'fdf2fit', 'reset', 'logger', 'dh_gconf', 'sg', 'gconf-merge-tree', 'eneconv_d', 'rpmdb', 'join', 'gcov-4.8', 'dh_installdocs', 'savelog', 'rake1.9.1', 'llvm-diff', 'byobu-janitor', 'genion_d', 'xzcmp', 'x86_64-linux-gnu-gprof', 'llvm-ar', 'grub-syslinux2cfg', 'xmessage', 'svnlook', 'dpkg-checkbuilddeps', 'xhost', 'gcov-tool', 'nvidia-debugdump', 'traceroute6', 'x86_64-linux-gnu-python3.4m-config', 'c89', 'mpiexec.openmpi', 'dh_listpackages', 'prename', 'g_angle_d', 'w', 'g_mdmat', 'dbilogstrip', 'inxi', 'xdg-icon-resource', 'edit', 'byobu-screen', 'do_dssp_d', 'diff3', 'ntpsweep', 'x86_64-linux-gnu-gcc-4.9', 'setxkbmap', 'intltool-merge', 'uptime', 'pygettext2.7', 'dh_dkms', 'test', 'x86_64-linux-gnu-python3.4-config', 'dh_bash-completion', 'g_analyze', 'tr', 'basename', 'opal_wrapper', 'llvm-dis-3.4', 'opalcc', 'mdrun_d', 'unlink', 'grub-mknetdir', 'g_covar_d', 'ubuntu-support-status', 'xlsfonts', 'gpgv', 'llvm-diff-3.4', 'taskset', 'colrm', 'orte-top', 'munge', 'faked-tcp', 'g_sorient', 'wc', 'aptitude', 'x86_64-linux-gnu-elfedit', 'gtester', 'msgcmp', 'pathchk', 'mysqlshow', 'llvm-objdump-3.4', 'grace', 'glib-genmarshal', 'vi', 'python2.7', 'llvm-dis-3.5', 'llvm-profdata-3.5', 'envsubst', 'xzegrep', 'g_hydorder_d', 'pod2html', 'slabtop', 'xset', 'pilconvert', 'getfacl', 'dvipdf', 'stat', 'x86_64-linux-gnu-gcc', 'pkcheck', 'printerbanner', 'install', 'w3m', 'c++', 'g_protonate', 'g_sigeps_d', 'byobu-ugraph', 'byobu-keybindings', 'g_dielectric_d', 'update-gconf-defaults', 'mpif90.openmpi', 'gcc-ranlib-4.8', 'x86_64-linux-gnu-cpp-5', 'nslookup', 'rdoc', 'obgrep', 'x86_64-linux-gnu-gcc-ar', 'cvtenc', 'pdb2.7', 'g_spatial_d', 'alien', 'resize', 'dh_desktop', 'macho-dump', 'g_gyrate', 'llvm-config-3.4', 'gnome-help', 'mysql_waitpid', 'twistd', 'easy_install-3.4', 'readelf', 'grub-mkimage', 'dh_scour', 'gsbj', 'gspath', 'dpkg', 'fakeroot', 'colormgr', 'gdialog', 'g_potential', 'troff', 'make_ndx', 'zxpdf', 'pkaction', 'g_polystat_d', 'easy_install3', 'dh_installinit', 'gettextize', 'run-this-one', 'updatedb.mlocate', 'passwd', 'grub-editenv', 'llvm-as-3.5', 'factor', 'dh_translations', 'vim.tiny', 'xsetpointer', 'dh_perl', 'xkbprint', 'g_sham_d', 'select-editor', 'llvm-nm-3.5', 'debconf-escape', 'llvm-rtdyld-3.4', 'prtstat', 'g_dyndom_d', 'gsettings-schema-convert', 'ntfsdecrypt', 'update-perl-sax-parsers', 'aubrsync', 'g_h2order_d', 'g_sas', 'x86_64-linux-gnu-gcov-4.9', 'g_hbond_d', 'ionice', 'dh_installdeb', 'chrt', 'x86_64-linux-gnu-objcopy', 'infotocap', 'pinky', 'ftp', 'ptar', 'getconf', 'pfbtopfa', 'see', 'rpmbuild', 'setpci', 'gtf', 'pilfont.py', 'x-terminal-emulator', 'nroff', 'obrotate', 'renice', 'logname', 'podselect', 'g_rotmat', 'x86_64-linux-gnu-gcc-nm-4.8', 'newgrp', 'dh_installcron', 'unzip', 'head', 'dpkg-parsechangelog', 'ssh-copy-id', 'gview', 'luit', 'g_dist_d', 'shred', 'dh_autotools-dev_updateconfig', 'Xorg', 'g_helix_d', 'debconf-set-selections', 'g_sgangle', 'mail-unlock', 'x86_64-linux-gnu-gcc-nm-5', 'byobu-disable', 'tracepath', 'rcp', 'last', 'word-list-compress', 'ntptrace', 'utmpdump', 'infocmp', 'llvm-ar-3.4', 'which', 'mysqlcheck', 'chcon', 'hexdump', 'autom4te', 'x86_64-linux-gnu-gcc-ranlib', 'lspci', 'xkeystone', 'R', 'bsd-mailx', 'col', 'gsnd', 'g_rmsf_d', 'calendar', 'g_helixorient_d', 'gvim', 'obprobe', 'g_rmsf', 'lastb', 'm4', 'rvim', 'most', 'nice', 'g_bond', 'podchecker', 'make_ndx_d', 'file', 'cvt', 'dig', 'gpic', 'dpkg-scanpackages', 'msginit', 'xmgrace', 'dh_gencontrol', 'trjorder', 'dh_installmanpages', 'ruby', 'apt-mark', 'chardetect3', 'nvidia-smi', 'byobu-status-detail', 'usbhid-dump', 'aptitude-curses', 'zsoelim', 'mysqlrepair', 'g_bundle', 'g_vanhove_d', 'testrb', 'python3.4m', 'rpmverify', 'x86_64-linux-gnu-ld', 'x86_64-linux-gnu-gcov', 'aubusy', 'orte-clean', 'smem', 'c_rehash', 'dpkg-distaddfile', 'xsubpp', 'byobu-launch', 'select-default-iwrap', 'chardet3', 'mailx', 'lzdiff', 'irb', 'fold', 'python-config', 'sudoedit', 'unicode_stop', 'lessecho', 'add-apt-repository', 'dpkg-vendor', 'xdg-mime', 'py3versions', 'debconf-updatepo', 'pydoc2.7', 'f2py3', 'dh_installwm', 'llvm-cov-3.4', 'g_rmsdist', 'hsmarkdown', 'pod2man', 'po2debconf', 'dh_auto_install', 'listres', 'dh_testdir', 'hwe-support-status', 'grog', 'xpdf', '2to3', 'nosetests3', 'dbiproxy', 'g_x2top', 'x86_64-linux-gnu-strip', 'whatis', 'python3m-config', 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'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkHIPPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:845) TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:845) Placeholder for now ================================================================================ TEST checkSYCLCompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:866) TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:866) Locate a functional SYCL compiler ================================================================================ TEST checkSYCLPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:892) TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:892) Placeholder for now ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:981) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:981) Locate a functional Cxx compiler Checking for program /home/fbrarda/petsc/arch-opt/bin/mpicxx...found Defined make macro "CXX" to "/home/fbrarda/petsc/arch-opt/bin/mpicxx" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Testing executable /tmp/petsc-l6ax4d0t/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx --version stdout: g++ (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1022) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1022) Locate a functional Cxx preprocessor Checking for program /home/fbrarda/petsc/arch-opt/bin/mpicxx...found Defined make macro "CXXPP" to "/home/fbrarda/petsc/arch-opt/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -E -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1123) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1123) Locate a functional Fortran compiler Checking for program /home/fbrarda/petsc/arch-opt/bin/mpif90...found Defined make macro "FC" to "/home/fbrarda/petsc/arch-opt/bin/mpif90" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Testing executable /tmp/petsc-l6ax4d0t/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1160) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1160) Locate a functional Fortran preprocessor Checking for program /home/fbrarda/petsc/arch-opt/bin/mpif90...found Defined make macro "FPP" to "/home/fbrarda/petsc/arch-opt/bin/mpif90 -E" Deleting "FPP" Checking for program /home/fbrarda/petsc/arch-opt/bin/mpif90...found Defined make macro "FPP" to "/home/fbrarda/petsc/arch-opt/bin/mpif90 --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1182) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1182) Make sure fortran comment "!" works Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1317) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1317) ================================================================================ TEST checkArchiver from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1416) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-l6ax4d0t/config.setCompilers/libconf1.a /tmp/petsc-l6ax4d0t/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /tmp/petsc-l6ax4d0t/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-l6ax4d0t/config.setCompilers/libconf1.a /tmp/petsc-l6ax4d0t/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib /tmp/petsc-l6ax4d0t/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -L/tmp/petsc-l6ax4d0t/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkArchiverRecipeArgfile from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1480) TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1480) Checks if AR handles @ notation Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1560) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1560) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking shared linker /home/fbrarda/petsc/arch-opt/bin/mpicc using flags ['-shared'] Checking for program /home/fbrarda/petsc/arch-opt/bin/mpicc...found Defined make macro "LD_SHARED" to "/home/fbrarda/petsc/arch-opt/bin/mpicc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -shared /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -L/tmp/petsc-l6ax4d0t/config.setCompilers -lconftest Using shared linker /home/fbrarda/petsc/arch-opt/bin/mpicc with flags ['-shared'] and library extension so Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1260) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1260) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying FC for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Accepted FC PIC code without compiler flag ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1672) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1672) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wl,-rpath,/home/fbrarda/petsc /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/fbrarda/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wl,-rpath,/home/fbrarda/petsc /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/fbrarda/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -V Trying FC linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wl,-rpath,/home/fbrarda/petsc /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/fbrarda/petsc ================================================================================ TEST checkLibC from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1711) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1711) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1757) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1757) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking dynamic linker /home/fbrarda/petsc/arch-opt/bin/mpicc using flags ['-shared'] Checking for program /home/fbrarda/petsc/arch-opt/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/home/fbrarda/petsc/arch-opt/bin/mpicc" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -shared /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -ldl Using dynamic linker /home/fbrarda/petsc/arch-opt/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/fbrarda/petsc/config/BuildSystem/config/setCompilers.py:1806) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1806) Output module data as defines and substitutions Substituting "CC" with "/home/fbrarda/petsc/arch-opt/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/fbrarda/petsc/arch-opt/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/home/fbrarda/petsc/arch-opt/bin/mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/home/fbrarda/petsc/arch-opt/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "/home/fbrarda/petsc/arch-opt/bin/mpif90" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" Defined make macro "C_VERSION" to "gcc (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413" Defined make macro "MPICC_SHOW" to "gcc -fPIC -fstack-protector -g -O -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "MPICC_SHOW" to "gcc -fPIC -fstack-protector -g -O -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "Cxx_VERSION" to "g++ (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413" Defined make macro "MPICXX_SHOW" to "g++ -fstack-protector -g -O -fPIC -std=gnu++14 -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -lmpicxx -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "MPICXX_SHOW" to "g++ -fstack-protector -g -O -fPIC -std=gnu++14 -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -lmpicxx -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "FC_VERSION" to "GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4" Defined make macro "MPIFC_SHOW" to "gfortran -fPIC -ffree-line-length-0 -g -O -I/home/fbrarda/petsc/arch-opt/include -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "MPIFC_SHOW" to "gfortran -fPIC -ffree-line-length-0 -g -O -I/home/fbrarda/petsc/arch-opt/include -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/fbrarda/petsc/config/BuildSystem/config/compilerFlags.py:81) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:81) Get the default compiler flags Trying C compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Trying C compiler flag -g Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g Trying C compiler flag -O Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O Trying Cxx compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Trying Cxx compiler flag -O Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O Trying FC compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -g Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -g Trying FC compiler flag -O Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -O Accepted C99 compile flag: Defined make macro "C_DEPFLAGS" to "-MMD -MP" Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkC99Flag from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:1416) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1416) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } ================================================================================ TEST checkRestrict from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:156) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -V Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.compilers/conftest.c:5:20: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:411) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:411) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:126) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:126) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:422) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:422) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:220) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:220) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:1367) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1367) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -MMD -MP /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -MMD -MP /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkRestrict from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:156) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -V Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:5:20: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxDialect from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:469) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:469) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:441) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:441) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:141) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:141) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:553) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:553) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.compilers/confc.o: In function `asub()': /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `std::cout' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-l6ax4d0t/config.compilers/confc.o: In function `__static_initialization_and_destruction_0': /usr/include/c++/5/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/include/c++/5/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-l6ax4d0t/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-l6ax4d0t/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl C++ libraries are not needed when using FC linker Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -V ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:860) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:860) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Defined "FORTRAN_CHARLEN_T" to "int" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:898) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:898) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.compilers/conftest.o: In function `MAIN__': /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status ================================================================================ TEST checkFortranLibraries from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:908) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:908) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.compilers/confc.o: In function `asub_': /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' collect2: error: ld returned 1 exit status Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -v -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -lstdc++ -ldl stdout: mpifort for MPICH version 3.3.2 Possible ERROR while running linker: stdout: mpifort for MPICH version 3.3.2stderr: Driving: gfortran -fPIC -ffree-line-length-0 -g -O -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -v -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -lstdc++ -ldl -I/home/fbrarda/petsc/arch-opt/include -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.4-2ubuntu1~14.04.4' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.8.4 (Ubuntu 4.8.4-2ubuntu1~14.04.4) Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-fPIC' '-ffree-line-length-0' '-g' '-O' '-o' '/tmp/petsc-l6ax4d0t/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/home/fbrarda/petsc/arch-opt/include' '-I' '/home/fbrarda/petsc/arch-opt/include' '-L/home/fbrarda/petsc/arch-opt/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/opt/slurm/14.11.3/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:./:/opt/slurm/14.11.3/lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-fPIC' '-ffree-line-length-0' '-g' '-O' '-o' '/tmp/petsc-l6ax4d0t/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/home/fbrarda/petsc/arch-opt/include' '-I' '/home/fbrarda/petsc/arch-opt/include' '-L/home/fbrarda/petsc/arch-opt/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-l6ax4d0t/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o -L/home/fbrarda/petsc/arch-opt/lib -L/opt/slurm/14.11.3/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L. -L/opt/slurm/14.11.3/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -lstdc++ -ldl -lmpifort -rpath /home/fbrarda/petsc/arch-opt/lib --enable-new-dtags -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Checking arg mpifort compilers: Unknown arg mpifort compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.3.2 compilers: Unknown arg 3.3.2 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-l6ax4d0t/config.compilers/conftest compilers: Unknown arg /tmp/petsc-l6ax4d0t/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg /tmp/petsc-l6ax4d0t/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-l6ax4d0t/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -I/home/fbrarda/petsc/arch-opt/include compilers: Found include directory: /home/fbrarda/petsc/arch-opt/include compilers: Checking arg -I/home/fbrarda/petsc/arch-opt/include compilers: Found include directory: /home/fbrarda/petsc/arch-opt/include compilers: Checking arg -L/home/fbrarda/petsc/arch-opt/lib compilers: Found library directory: -L/home/fbrarda/petsc/arch-opt/lib compilers: Checking arg -lmpifort compilers: Found library: -lmpifort compilers: Checking arg -Wl,-rpath compilers: Unknown arg -Wl,-rpath compilers: Checking arg -Wl,/home/fbrarda/petsc/arch-opt/lib compilers: Unknown arg -Wl,/home/fbrarda/petsc/arch-opt/lib compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs compilers: Checking arg --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.8 compilers: Unknown arg --program-suffix=-4.8 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.8 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.8 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-libmudflap compilers: Unknown arg --disable-libmudflap compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --disable-browser-plugin compilers: Unknown arg --disable-browser-plugin compilers: Checking arg --enable-java-awt=gtk compilers: Unknown arg --enable-java-awt=gtk compilers: Checking arg --enable-gtk-cairo compilers: Unknown arg --enable-gtk-cairo compilers: Checking arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre compilers: Unknown arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre compilers: Checking arg --enable-java-home compilers: Unknown arg --enable-java-home compilers: Checking arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 compilers: Unknown arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 compilers: Checking arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 compilers: Unknown arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 compilers: Checking arg --with-arch-directory=amd64 compilers: Unknown arg --with-arch-directory=amd64 compilers: Checking arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.4 compilers: Unknown arg 4.8.4 compilers: Checking arg (Ubuntu compilers: Unknown arg (Ubuntu compilers: Checking arg 4.8.4-2ubuntu1~14.04.4) compilers: Unknown arg 4.8.4-2ubuntu1~14.04.4) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/opt/slurm/14.11.3/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:./:/opt/slurm/14.11.3/lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/opt/slurm/14.11.3/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:./:/opt/slurm/14.11.3/lib/:/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-l6ax4d0t/config.compilers/conftest compilers: Unknown arg /tmp/petsc-l6ax4d0t/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbegin.o compilers: Checking arg -L/home/fbrarda/petsc/arch-opt/lib compilers: Already in lflags so skipping: -L/home/fbrarda/petsc/arch-opt/lib compilers: Checking arg -L/opt/slurm/14.11.3/lib/../lib compilers: Found library directory: -L/opt/slurm/14.11.3/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.8 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L. compilers: Found library directory: -L/home/fbrarda/petsc compilers: Checking arg -L/opt/slurm/14.11.3/lib compilers: Already in lflags so skipping: -L/opt/slurm/14.11.3/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. compilers: Checking arg /tmp/petsc-l6ax4d0t/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-l6ax4d0t/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -rpath compilers: Found -rpath library: /home/fbrarda/petsc/arch-opt/lib compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-lstdc++', '-ldl', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-L/home/fbrarda/petsc/arch-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/opt/slurm/14.11.3/lib', '-L/opt/slurm/14.11.3/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/fbrarda/petsc', '-L/home/fbrarda/petsc', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.setCompilers/conftest ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:1332) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1332) Check that Fortran can link C++ libraries Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.compilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.compilers/conftest.o /tmp/petsc-l6ax4d0t/config.compilers/cxxobj.o /tmp/petsc-l6ax4d0t/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/fbrarda/petsc/config/BuildSystem/config/compilers.py:1487) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1487) Not checking for library in Download MPICH: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download MPICH: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Found header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Checking for headers [] in Download MPICH: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkVersion from config.packages.MPICH(/home/fbrarda/petsc/config/BuildSystem/config/package.py:1024) TESTING: checkVersion from config.packages.MPICH(config/BuildSystem/config/package.py:1024) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.MPICH(/home/fbrarda/petsc/config/BuildSystem/config/package.py:953) TESTING: checkSharedLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.MPICH 283.486062 ================================================================================ TEST consistencyChecks from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/package.py:870) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:870) ================================================================================ TEST configureLibrary from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:692) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:692) ================================================================================== Checking for a functional MPI Checking for library in Package specific search directory MPI: [] Contents: ['share', 'externalpackages', 'include', 'bin', 'lib'] ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Package specific search directory MPI: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Found header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Checking for headers ['mpi.h'] in Package specific search directory MPI: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/home/fbrarda/petsc/arch-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/fbrarda/petsc/arch-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkMPIDistro from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:553) TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:553) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.packages.MPI Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:4:25: error: ‘I_MPI_VERSION’ undeclared here (not in a function) const char *mpich_ver = I_MPI_VERSION; ^ Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:4:17: error: ‘I_MPI_NUMVERSION’ undeclared here (not in a function) int mpich_ver = I_MPI_NUMVERSION; ^ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:4:17: error: ‘MVAPICH2_NUMVERSION’ undeclared here (not in a function) int mpich_ver = MVAPICH2_NUMVERSION; ^ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30302300" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST configureMPI2 from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:328) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:328) Check for functions added to the interface in MPI-2 Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:373) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:373) Check for functions added to the interface in MPI-3 Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:6:30: warning: ‘win’ is used uninitialized in this function [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:6:47: warning: ‘win’ is used uninitialized in this function [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:176) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:176) Checking for location of mpiexec Checking for program /home/fbrarda/petsc/arch-opt/bin/mpiexec...found Checking for program /home/fbrarda/petsc/arch-opt/bin/mpiexec...found Defined make macro "MPIEXECEXECUTABLE" to "/home/fbrarda/petsc/arch-opt/bin/mpiexec" Running Executable with threads to time it out at 120 Executing: /home/fbrarda/petsc/arch-opt/bin/mpiexec -n 1 printenv stdout: LIBRARY_PATH=:/opt/slurm/14.11.3/lib LESSOPEN=| /usr/bin/lesspipe %s SINFO_FORMAT=%10P %.5a %.12l %.8D %.6t %.10N %.7G %.15C MAIL=/var/mail/fbrarda SSH_CLIENT=10.112.0.1 51280 22 USER=fbrarda LANGUAGE=en_US:en LD_LIBRARY_PATH=:/opt/slurm/14.11.3/lib:/home/fbrarda/petsc/arch-opt/lib SHLVL=1 CONDA_SHLVL=0 HOME=/home/fbrarda OLDPWD=/home/fbrarda SSH_TTY=/dev/pts/1 SQUEUE_FORMAT=%8i %15u %.9P %.14j %.8T %.12M %.4D %.3C %.8b %.20e %r LOGNAME=fbrarda _=./configure BASH_FUNC_module%%=() { eval `/opt/Modules/$MODULE_VERSION/bin/modulecmd bash $*` } XDG_SESSION_ID=5874 TERM=xterm-256color COLUMNS=189 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/bin/anaconda2/bin:/opt/slurm/14.11.3/bin XDG_RUNTIME_DIR=/run/user/1012 LANG=en_US.UTF-8 LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36: SHELL=/bin/bash LESSCLOSE=/usr/bin/lesspipe %s %s MODULE_VERSION=3.2.10 MODULE_VERSION_STACK=3.2.10 PWD=/home/fbrarda/petsc LOADEDMODULES= SSH_CONNECTION=10.112.0.1 51280 10.112.10.5 22 LINES=48 CPATH=:/opt/slurm/14.11.3/include/slurm MODULEPATH=/opt/Modules/versions/:/opt/Modules/$MODULE_VERSION/modulefiles MODULESHOME=/opt/Modules/3.2.10 HYDI_CONTROL_FD=7 GFORTRAN_UNBUFFERED_PRECONNECTED=y MPIR_CVAR_CH3_INTERFACE_HOSTNAME=srvulx13 MPI_LOCALNRANKS=1 MPI_LOCALRANKID=0 PMI_RANK=0 PMI_FD=6 PMI_SIZE=1 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "MPIR_CVAR_CH3" Defined make macro "MPIEXEC" to "/home/fbrarda/petsc/arch-opt/bin/mpiexec" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/socketfilterfw...not found Unable to find programs ['socketfilterfw'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/libexec/ApplicationFirewall gives errors: [Errno 2] No such file or directory: '/usr/libexec/ApplicationFirewall' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/sbin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/sbin/hostname...not found Checking for program /usr/bin/hostname...not found Checking for program /sbin/hostname...not found Checking for program /bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: srvulx13 Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...not found Checking for program /usr/local/sbin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/sbin/ping...not found Checking for program /usr/bin/ping...not found Checking for program /sbin/ping...not found Checking for program /bin/ping...found Defined make macro "PING" to "ping" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable with threads to time it out at 60 Executing: ping -c 2 srvulx13 stdout: PING srvulx13.bcamath.org (10.112.10.5) 56(84) bytes of data. 64 bytes from srvulx13.bcamath.org (10.112.10.5): icmp_seq=1 ttl=64 time=0.071 ms 64 bytes from srvulx13.bcamath.org (10.112.10.5): icmp_seq=2 ttl=64 time=0.039 ms --- srvulx13.bcamath.org ping statistics --- 2 packets transmitted, 2 received, 0% packet loss, time 999ms rtt min/avg/max/mdev = 0.039/0.055/0.071/0.016 ms Return code from ping: 0 =============================================================================== Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest to see if it can be run Executing: /home/fbrarda/petsc/arch-opt/bin/mpiexec -n 1 /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: /home/fbrarda/petsc/arch-opt/bin/mpiexec -n 1 /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest ================================================================================ TEST configureMPITypes from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:420) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:420) Checking for MPI Datatype handles Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest to see if it can be run Executing: /home/fbrarda/petsc/arch-opt/bin/mpiexec -n 1 /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: /home/fbrarda/petsc/arch-opt/bin/mpiexec -n 1 /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest to see if it can be run Executing: /home/fbrarda/petsc/arch-opt/bin/mpiexec -n 1 /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: /home/fbrarda/petsc/arch-opt/bin/mpiexec -n 1 /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest to see if it can be run Executing: /home/fbrarda/petsc/arch-opt/bin/mpiexec -n 1 /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: /home/fbrarda/petsc/arch-opt/bin/mpiexec -n 1 /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" ================================================================================ TEST SGIMPICheck from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:481) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:481) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:491) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:491) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.cc: In function ‘void _check_MPI_Finalize()’: /tmp/petsc-l6ax4d0t/config.libraries/conftest.cc:5:41: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl ================================================================================ TEST FortranMPICheck from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:507) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:507) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Checking for mpi.mod Checking for functions [] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpif90 -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_F90MODULE" to "1" ================================================================================ TEST configureIO from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:529) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:529) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:12:5: warning: ‘buf’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:18:5: warning: ‘disp’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:18:5: warning: ‘info’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:633) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:633) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ================================================================================ TEST PetscArchMPICheck from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/packages/MPI.py:667) TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:667) mpi.h found in build dir! Checking if its a bad copy. Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c mpi_h_line: # 1 "/home/fbrarda/petsc/arch-opt/include/mpi.h" 1 Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/home/fbrarda/petsc/arch-opt/include -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c mpi_h_line: # 1 "/home/fbrarda/petsc/arch-opt/include/mpi.h" 1 Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' collect2: error: ld returned 1 exit status Checking for functions [MPIX_Ibarrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_MPIX_Ibarrier': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5: undefined reference to `MPIX_Ibarrier' collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_NAMED;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ================================================================================ TEST checkVersion from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/package.py:1024) TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1024) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/home/fbrarda/petsc/config/BuildSystem/config/package.py:953) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.MPI 11.215662 ================================================================================ TEST consistencyChecks from config.packages.zstd(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.zstd(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.003243 ================================================================================ TEST consistencyChecks from config.packages.yaml(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.002648 ================================================================================ TEST consistencyChecks from config.packages.valgrind(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST configureLibrary from config.packages.valgrind(/home/fbrarda/petsc/config/BuildSystem/config/package.py:895) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Found header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/home/fbrarda/petsc/arch-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/fbrarda/petsc/arch-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/home/fbrarda/petsc//" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directorycompilation terminated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/home/fbrarda/petsc/arch-opt/include'] Found header files [] in ['/usr/local/include', '/home/fbrarda/petsc/arch-opt/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/home/fbrarda/petsc/arch-opt/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/home/fbrarda/petsc/arch-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/usr/local/include -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/home/fbrarda/petsc//" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" # 1 "/tmp/petsc-l6ax4d0t/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 # 1 "/tmp/petsc-l6ax4d0t/config.headers/conffix.h" 1 # 3 "/tmp/petsc-l6ax4d0t/config.headers/conftest.c" 2 stderr: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-l6ax4d0t/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directorycompilation terminated.: VALGRIND: DirPath not found.. skipping: /usr/local/lib64 VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux =============================================================================== It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure =============================================================================== child config.packages.valgrind 0.087771 ================================================================================ TEST consistencyChecks from config.packages.sycl(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.sycl(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.002960 ================================================================================ TEST consistencyChecks from config.packages.ssl(/home/fbrarda/petsc/config/BuildSystem/config/packages/ssl.py:31) TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ================================================================================ TEST alternateConfigureLibrary from config.packages.ssl(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.002517 ================================================================================ TEST consistencyChecks from config.packages.sprng(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.002611 PETSc clone, checking for Sowing Checking for program /usr/local/sbin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /sbin/pdflatex...not found Checking for program /bin/pdflatex...not found Checking for program /usr/games/pdflatex...not found Checking for program /usr/local/games/pdflatex...not found Checking for program /usr/bin/anaconda2/bin/pdflatex...not found Checking for program /opt/slurm/14.11.3/bin/pdflatex...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/pdflatex...not found Unable to find programs ['pdflatex'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 'g_anaeig', 'lwp-mirror', 'lesspipe', 'dpkg-query', 'enchant', 'g_select_d', 'lspgpot', 'telnet', 'py3clean', 'dh_fixperms', 'g_rotmat_d', 'autogen', 'ompi-server', 'pygettext3', 'pdb3.4', 'chattr', 'printenv', 'ngettext', 'preconv', 'ldd', 'dpkg-source', 'gedit', 'g_lie', 'rpm', 'unlzma', 'xxd', 'uxterm', 'obminimize', 'clang-check-3.5', 'printf', 'g_confrms_d', 'top', 'ssh-agent', 'lsb_release', 'dbus-launch', 'setarch', 'grub-mkrelpath', 'x86_64-linux-gnu-gfortran-4.8', 'dpkg-split', 'on_ac_power', 'genbox_d', 'iceauth', 'g_spol_d', 'xlsclients', 'dh_installxfonts', 'sfparse', 'x86_64-linux-gnu-cpp-4.8', 'dotlockfile', 'wpa_passphrase', 'pldd', 'mysql_fix_extensions', 'gdebi', 'g_sorient_d', 'x86_64-linux-gnu-python-config', 'dh_pypy', 'dpkg-gencontrol', 'xpm2ps_d', 'orted', 'llvm-as-3.4', 'llvm-mc-3.4', 'emacs', 'splain', 'g_nmeig_d', 'aptitude-run-state-bundle', 'trjcat', 'aptitude-create-state-bundle', 'ncursesw5-config', 'f2py2.7', 'icu-config', 'gslj', 'info', 'etags', 'byobu-tmux', 'intltoolize', '*', 'dh_suidregister', 'pycompile', 'xfd', 'msgunfmt', 'gtbl', 'ri1.9.1', 'gracebat', 'git-shell', 'loadkeys', 'x86_64-linux-gnu-objdump', 'gcc-ar', 'fdf2fit', 'reset', 'logger', 'dh_gconf', 'sg', 'gconf-merge-tree', 'eneconv_d', 'rpmdb', 'join', 'gcov-4.8', 'dh_installdocs', 'savelog', 'rake1.9.1', 'llvm-diff', 'byobu-janitor', 'genion_d', 'xzcmp', 'x86_64-linux-gnu-gprof', 'llvm-ar', 'grub-syslinux2cfg', 'xmessage', 'svnlook', 'dpkg-checkbuilddeps', 'xhost', 'gcov-tool', 'nvidia-debugdump', 'traceroute6', 'x86_64-linux-gnu-python3.4m-config', 'c89', 'mpiexec.openmpi', 'dh_listpackages', 'prename', 'g_angle_d', 'w', 'g_mdmat', 'dbilogstrip', 'inxi', 'xdg-icon-resource', 'edit', 'byobu-screen', 'do_dssp_d', 'diff3', 'ntpsweep', 'x86_64-linux-gnu-gcc-4.9', 'setxkbmap', 'intltool-merge', 'uptime', 'pygettext2.7', 'dh_dkms', 'test', 'x86_64-linux-gnu-python3.4-config', 'dh_bash-completion', 'g_analyze', 'tr', 'basename', 'opal_wrapper', 'llvm-dis-3.4', 'opalcc', 'mdrun_d', 'unlink', 'grub-mknetdir', 'g_covar_d', 'ubuntu-support-status', 'xlsfonts', 'gpgv', 'llvm-diff-3.4', 'taskset', 'colrm', 'orte-top', 'munge', 'faked-tcp', 'g_sorient', 'wc', 'aptitude', 'x86_64-linux-gnu-elfedit', 'gtester', 'msgcmp', 'pathchk', 'mysqlshow', 'llvm-objdump-3.4', 'grace', 'glib-genmarshal', 'vi', 'python2.7', 'llvm-dis-3.5', 'llvm-profdata-3.5', 'envsubst', 'xzegrep', 'g_hydorder_d', 'pod2html', 'slabtop', 'xset', 'pilconvert', 'getfacl', 'dvipdf', 'stat', 'x86_64-linux-gnu-gcc', 'pkcheck', 'printerbanner', 'install', 'w3m', 'c++', 'g_protonate', 'g_sigeps_d', 'byobu-ugraph', 'byobu-keybindings', 'g_dielectric_d', 'update-gconf-defaults', 'mpif90.openmpi', 'gcc-ranlib-4.8', 'x86_64-linux-gnu-cpp-5', 'nslookup', 'rdoc', 'obgrep', 'x86_64-linux-gnu-gcc-ar', 'cvtenc', 'pdb2.7', 'g_spatial_d', 'alien', 'resize', 'dh_desktop', 'macho-dump', 'g_gyrate', 'llvm-config-3.4', 'gnome-help', 'mysql_waitpid', 'twistd', 'easy_install-3.4', 'readelf', 'grub-mkimage', 'dh_scour', 'gsbj', 'gspath', 'dpkg', 'fakeroot', 'colormgr', 'gdialog', 'g_potential', 'troff', 'make_ndx', 'zxpdf', 'pkaction', 'g_polystat_d', 'easy_install3', 'dh_installinit', 'gettextize', 'run-this-one', 'updatedb.mlocate', 'passwd', 'grub-editenv', 'llvm-as-3.5', 'factor', 'dh_translations', 'vim.tiny', 'xsetpointer', 'dh_perl', 'xkbprint', 'g_sham_d', 'select-editor', 'llvm-nm-3.5', 'debconf-escape', 'llvm-rtdyld-3.4', 'prtstat', 'g_dyndom_d', 'gsettings-schema-convert', 'ntfsdecrypt', 'update-perl-sax-parsers', 'aubrsync', 'g_h2order_d', 'g_sas', 'x86_64-linux-gnu-gcov-4.9', 'g_hbond_d', 'ionice', 'dh_installdeb', 'chrt', 'x86_64-linux-gnu-objcopy', 'infotocap', 'pinky', 'ftp', 'ptar', 'getconf', 'pfbtopfa', 'see', 'rpmbuild', 'setpci', 'gtf', 'pilfont.py', 'x-terminal-emulator', 'nroff', 'obrotate', 'renice', 'logname', 'podselect', 'g_rotmat', 'x86_64-linux-gnu-gcc-nm-4.8', 'newgrp', 'dh_installcron', 'unzip', 'head', 'dpkg-parsechangelog', 'ssh-copy-id', 'gview', 'luit', 'g_dist_d', 'shred', 'dh_autotools-dev_updateconfig', 'Xorg', 'g_helix_d', 'debconf-set-selections', 'g_sgangle', 'mail-unlock', 'x86_64-linux-gnu-gcc-nm-5', 'byobu-disable', 'tracepath', 'rcp', 'last', 'word-list-compress', 'ntptrace', 'utmpdump', 'infocmp', 'llvm-ar-3.4', 'which', 'mysqlcheck', 'chcon', 'hexdump', 'autom4te', 'x86_64-linux-gnu-gcc-ranlib', 'lspci', 'xkeystone', 'R', 'bsd-mailx', 'col', 'gsnd', 'g_rmsf_d', 'calendar', 'g_helixorient_d', 'gvim', 'obprobe', 'g_rmsf', 'lastb', 'm4', 'rvim', 'most', 'nice', 'g_bond', 'podchecker', 'make_ndx_d', 'file', 'cvt', 'dig', 'gpic', 'dpkg-scanpackages', 'msginit', 'xmgrace', 'dh_gencontrol', 'trjorder', 'dh_installmanpages', 'ruby', 'apt-mark', 'chardetect3', 'nvidia-smi', 'byobu-status-detail', 'usbhid-dump', 'aptitude-curses', 'zsoelim', 'mysqlrepair', 'g_bundle', 'g_vanhove_d', 'testrb', 'python3.4m', 'rpmverify', 'x86_64-linux-gnu-ld', 'x86_64-linux-gnu-gcov', 'aubusy', 'orte-clean', 'smem', 'c_rehash', 'dpkg-distaddfile', 'xsubpp', 'byobu-launch', 'select-default-iwrap', 'chardet3', 'mailx', 'lzdiff', 'irb', 'fold', 'python-config', 'sudoedit', 'unicode_stop', 'lessecho', 'add-apt-repository', 'dpkg-vendor', 'xdg-mime', 'py3versions', 'debconf-updatepo', 'pydoc2.7', 'f2py3', 'dh_installwm', 'llvm-cov-3.4', 'g_rmsdist', 'hsmarkdown', 'pod2man', 'po2debconf', 'dh_auto_install', 'listres', 'dh_testdir', 'hwe-support-status', 'grog', 'xpdf', '2to3', 'nosetests3', 'dbiproxy', 'g_x2top', 'x86_64-linux-gnu-strip', 'whatis', 'python3m-config', 'vmstat', 'pkill', 'xml2-config', 'llvm-link-3.4', 'llvm-ld', 'pilprint.py', 'bcp', 'g_tune_pme_d', 'x86_64-linux-gnu-addr2line', 'opentool', 'irb1.9.1', 'ispell-wrapper', 'pager', 'gvimdiff', 'gcc-ranlib-5', 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'linux-check-removal', 'atrm', 'lessfile', 'dh_auto_build', 'pdf2dsc', 'mysql_plugin', 'cpp-4.9', 'getopt', 'lsattr', 'glib-compile-schemas', 'debugapp', 'libtool', 'xwininfo', 'nano', 'lli-child-target-3.5', 'newaliases', 'x86_64-linux-gnu-gcc-ar-5', 'ptx', 'genconf_d', 'g_potential_d', 'llvm-dis', 'perlbug', 'watch', 'cpp-4.8', 'autogsdoc', 'gcc-ar-4.9', 'vim', 'piconv', 'obrotamer', 'localectl', 'g_angle', 'docker-init', 'byobu-launcher-install', 'munindoc', 'plget', 'ps2ascii', 'obspectrophore', 'obabel', 'mandb', 'as', 'mdrun', 'gtester-report', 'dh_installlogcheck', 'dh_installgsettings', 'volname', 'msgexec', 'byobu-status', 'cal', 'g_sans', 'ompi-ps', 'g_mindist_d', 'g_spatial', 'g_chi', 'ischroot', 'g_chi_d', 'split', 'lsusb', 'rstudio', 'x86_64-linux-gnu-g++-4.8', 'g_sas_d', 'mpic++.openmpi', 'm17n-db', 'xterm', 'json_pp', 'dh_scrollkeeper', 'gvimtutor', 'perldoc', 'ntpq', 'poff', 'ex', 'llvm-stress-3.4', 'gs', 'pon', 'gcc-nm-4.9', 'dh_installifupdown', 'dh_ucf', 'report-hw', 'docker-containerd', 'xkbcomp', 'ubuntu-bug', 'getkeycodes', 'obconf', 'docker-proxy', 'g_dielectric', 'g_current', 'g_select', 'gprof', 'dgawk', 'babel', 'loadunimap', 'erb', 'dockerd', 'pkttyagent', 'demux', 'perlivp', 'dh_strip', 'cmp', 'g_luck', 'g_bar_d', 'make_strings', 'myisampack', 'ar', 'x86_64-linux-gnu-g++', 'lsipc', 'rpm2cpio', 'c89-gcc', 'apt-config', 'ngmx_d', 'patch', 'xpm2ps', 'rename', 'peekfd', 'xsetroot', 'fc-list', 'mysql_config', 'aspell-import', 'zeitgeist-datahub', 'ssh-import-id-gh', 'llvm-config', 'genrestr', 'ssh-import-id-lp', 'mysql_zap', 'ssh-keyscan', 'gettext.sh', 'openbox', 'g_h2order', 'eview', 'deb-systemd-invoke', 'grub-glue-efi', 'htop', 'unexpand', 'macho-dump-3.5', 'expr', 'gcc-4.9', 'g_densorder', 'cpan5.22-x86_64-linux-gnu', 'g_densmap_d', 'from', 'llvm-diff-3.5', 'xstdcmap', 'autoreconf', 'x86_64-linux-gnu-cpp-4.9', 'plog', 'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/sbin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /sbin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/games/bfort...not found Checking for program /usr/local/games/bfort...not found Checking for program /usr/bin/anaconda2/bin/bfort...not found Checking for program /opt/slurm/14.11.3/bin/bfort...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/bfort...not found Unable to find programs ['bfort'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 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'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/sbin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /sbin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/games/doctext...not found Checking for program /usr/local/games/doctext...not found Checking for program /usr/bin/anaconda2/bin/doctext...not found Checking for program /opt/slurm/14.11.3/bin/doctext...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/doctext...not found Unable to find programs ['doctext'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 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'dh_strip', 'cmp', 'g_luck', 'g_bar_d', 'make_strings', 'myisampack', 'ar', 'x86_64-linux-gnu-g++', 'lsipc', 'rpm2cpio', 'c89-gcc', 'apt-config', 'ngmx_d', 'patch', 'xpm2ps', 'rename', 'peekfd', 'xsetroot', 'fc-list', 'mysql_config', 'aspell-import', 'zeitgeist-datahub', 'ssh-import-id-gh', 'llvm-config', 'genrestr', 'ssh-import-id-lp', 'mysql_zap', 'ssh-keyscan', 'gettext.sh', 'openbox', 'g_h2order', 'eview', 'deb-systemd-invoke', 'grub-glue-efi', 'htop', 'unexpand', 'macho-dump-3.5', 'expr', 'gcc-4.9', 'g_densorder', 'cpan5.22-x86_64-linux-gnu', 'g_densmap_d', 'from', 'llvm-diff-3.5', 'xstdcmap', 'autoreconf', 'x86_64-linux-gnu-cpp-4.9', 'plog', 'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/sbin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /sbin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/games/mapnames...not found Checking for program /usr/local/games/mapnames...not found Checking for program /usr/bin/anaconda2/bin/mapnames...not found Checking for program /opt/slurm/14.11.3/bin/mapnames...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/mapnames...not found Unable to find programs ['mapnames'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 'g_anaeig', 'lwp-mirror', 'lesspipe', 'dpkg-query', 'enchant', 'g_select_d', 'lspgpot', 'telnet', 'py3clean', 'dh_fixperms', 'g_rotmat_d', 'autogen', 'ompi-server', 'pygettext3', 'pdb3.4', 'chattr', 'printenv', 'ngettext', 'preconv', 'ldd', 'dpkg-source', 'gedit', 'g_lie', 'rpm', 'unlzma', 'xxd', 'uxterm', 'obminimize', 'clang-check-3.5', 'printf', 'g_confrms_d', 'top', 'ssh-agent', 'lsb_release', 'dbus-launch', 'setarch', 'grub-mkrelpath', 'x86_64-linux-gnu-gfortran-4.8', 'dpkg-split', 'on_ac_power', 'genbox_d', 'iceauth', 'g_spol_d', 'xlsclients', 'dh_installxfonts', 'sfparse', 'x86_64-linux-gnu-cpp-4.8', 'dotlockfile', 'wpa_passphrase', 'pldd', 'mysql_fix_extensions', 'gdebi', 'g_sorient_d', 'x86_64-linux-gnu-python-config', 'dh_pypy', 'dpkg-gencontrol', 'xpm2ps_d', 'orted', 'llvm-as-3.4', 'llvm-mc-3.4', 'emacs', 'splain', 'g_nmeig_d', 'aptitude-run-state-bundle', 'trjcat', 'aptitude-create-state-bundle', 'ncursesw5-config', 'f2py2.7', 'icu-config', 'gslj', 'info', 'etags', 'byobu-tmux', 'intltoolize', '*', 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'grub-mknetdir', 'g_covar_d', 'ubuntu-support-status', 'xlsfonts', 'gpgv', 'llvm-diff-3.4', 'taskset', 'colrm', 'orte-top', 'munge', 'faked-tcp', 'g_sorient', 'wc', 'aptitude', 'x86_64-linux-gnu-elfedit', 'gtester', 'msgcmp', 'pathchk', 'mysqlshow', 'llvm-objdump-3.4', 'grace', 'glib-genmarshal', 'vi', 'python2.7', 'llvm-dis-3.5', 'llvm-profdata-3.5', 'envsubst', 'xzegrep', 'g_hydorder_d', 'pod2html', 'slabtop', 'xset', 'pilconvert', 'getfacl', 'dvipdf', 'stat', 'x86_64-linux-gnu-gcc', 'pkcheck', 'printerbanner', 'install', 'w3m', 'c++', 'g_protonate', 'g_sigeps_d', 'byobu-ugraph', 'byobu-keybindings', 'g_dielectric_d', 'update-gconf-defaults', 'mpif90.openmpi', 'gcc-ranlib-4.8', 'x86_64-linux-gnu-cpp-5', 'nslookup', 'rdoc', 'obgrep', 'x86_64-linux-gnu-gcc-ar', 'cvtenc', 'pdb2.7', 'g_spatial_d', 'alien', 'resize', 'dh_desktop', 'macho-dump', 'g_gyrate', 'llvm-config-3.4', 'gnome-help', 'mysql_waitpid', 'twistd', 'easy_install-3.4', 'readelf', 'grub-mkimage', 'dh_scour', 'gsbj', 'gspath', 'dpkg', 'fakeroot', 'colormgr', 'gdialog', 'g_potential', 'troff', 'make_ndx', 'zxpdf', 'pkaction', 'g_polystat_d', 'easy_install3', 'dh_installinit', 'gettextize', 'run-this-one', 'updatedb.mlocate', 'passwd', 'grub-editenv', 'llvm-as-3.5', 'factor', 'dh_translations', 'vim.tiny', 'xsetpointer', 'dh_perl', 'xkbprint', 'g_sham_d', 'select-editor', 'llvm-nm-3.5', 'debconf-escape', 'llvm-rtdyld-3.4', 'prtstat', 'g_dyndom_d', 'gsettings-schema-convert', 'ntfsdecrypt', 'update-perl-sax-parsers', 'aubrsync', 'g_h2order_d', 'g_sas', 'x86_64-linux-gnu-gcov-4.9', 'g_hbond_d', 'ionice', 'dh_installdeb', 'chrt', 'x86_64-linux-gnu-objcopy', 'infotocap', 'pinky', 'ftp', 'ptar', 'getconf', 'pfbtopfa', 'see', 'rpmbuild', 'setpci', 'gtf', 'pilfont.py', 'x-terminal-emulator', 'nroff', 'obrotate', 'renice', 'logname', 'podselect', 'g_rotmat', 'x86_64-linux-gnu-gcc-nm-4.8', 'newgrp', 'dh_installcron', 'unzip', 'head', 'dpkg-parsechangelog', 'ssh-copy-id', 'gview', 'luit', 'g_dist_d', 'shred', 'dh_autotools-dev_updateconfig', 'Xorg', 'g_helix_d', 'debconf-set-selections', 'g_sgangle', 'mail-unlock', 'x86_64-linux-gnu-gcc-nm-5', 'byobu-disable', 'tracepath', 'rcp', 'last', 'word-list-compress', 'ntptrace', 'utmpdump', 'infocmp', 'llvm-ar-3.4', 'which', 'mysqlcheck', 'chcon', 'hexdump', 'autom4te', 'x86_64-linux-gnu-gcc-ranlib', 'lspci', 'xkeystone', 'R', 'bsd-mailx', 'col', 'gsnd', 'g_rmsf_d', 'calendar', 'g_helixorient_d', 'gvim', 'obprobe', 'g_rmsf', 'lastb', 'm4', 'rvim', 'most', 'nice', 'g_bond', 'podchecker', 'make_ndx_d', 'file', 'cvt', 'dig', 'gpic', 'dpkg-scanpackages', 'msginit', 'xmgrace', 'dh_gencontrol', 'trjorder', 'dh_installmanpages', 'ruby', 'apt-mark', 'chardetect3', 'nvidia-smi', 'byobu-status-detail', 'usbhid-dump', 'aptitude-curses', 'zsoelim', 'mysqlrepair', 'g_bundle', 'g_vanhove_d', 'testrb', 'python3.4m', 'rpmverify', 'x86_64-linux-gnu-ld', 'x86_64-linux-gnu-gcov', 'aubusy', 'orte-clean', 'smem', 'c_rehash', 'dpkg-distaddfile', 'xsubpp', 'byobu-launch', 'select-default-iwrap', 'chardet3', 'mailx', 'lzdiff', 'irb', 'fold', 'python-config', 'sudoedit', 'unicode_stop', 'lessecho', 'add-apt-repository', 'dpkg-vendor', 'xdg-mime', 'py3versions', 'debconf-updatepo', 'pydoc2.7', 'f2py3', 'dh_installwm', 'llvm-cov-3.4', 'g_rmsdist', 'hsmarkdown', 'pod2man', 'po2debconf', 'dh_auto_install', 'listres', 'dh_testdir', 'hwe-support-status', 'grog', 'xpdf', '2to3', 'nosetests3', 'dbiproxy', 'g_x2top', 'x86_64-linux-gnu-strip', 'whatis', 'python3m-config', 'vmstat', 'pkill', 'xml2-config', 'llvm-link-3.4', 'llvm-ld', 'pilprint.py', 'bcp', 'g_tune_pme_d', 'x86_64-linux-gnu-addr2line', 'opentool', 'irb1.9.1', 'ispell-wrapper', 'pager', 'gvimdiff', 'gcc-ranlib-5', 'python3.4', 'g_rotacf_d', 'addr2line', 'ccze-cssdump', 'expand', 'clang-tblgen-3.5', 'dh_lintian', 'xmlparse', 'updatedb', 'mysqldumpslow', 'iptables-xml', 'setkeycodes', 'g++', 'ebrowse', 'grub-file', 'captoinfo', 'byobu-launcher', 'tapconvert', 'ld', 'orteCC', 'gcc-nm', 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'make_strings', 'myisampack', 'ar', 'x86_64-linux-gnu-g++', 'lsipc', 'rpm2cpio', 'c89-gcc', 'apt-config', 'ngmx_d', 'patch', 'xpm2ps', 'rename', 'peekfd', 'xsetroot', 'fc-list', 'mysql_config', 'aspell-import', 'zeitgeist-datahub', 'ssh-import-id-gh', 'llvm-config', 'genrestr', 'ssh-import-id-lp', 'mysql_zap', 'ssh-keyscan', 'gettext.sh', 'openbox', 'g_h2order', 'eview', 'deb-systemd-invoke', 'grub-glue-efi', 'htop', 'unexpand', 'macho-dump-3.5', 'expr', 'gcc-4.9', 'g_densorder', 'cpan5.22-x86_64-linux-gnu', 'g_densmap_d', 'from', 'llvm-diff-3.5', 'xstdcmap', 'autoreconf', 'x86_64-linux-gnu-cpp-4.9', 'plog', 'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/sbin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /sbin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/games/bib2html...not found Checking for program /usr/local/games/bib2html...not found Checking for program /usr/bin/anaconda2/bin/bib2html...not found Checking for program /opt/slurm/14.11.3/bin/bib2html...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/bib2html...not found Unable to find programs ['bib2html'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 'g_anaeig', 'lwp-mirror', 'lesspipe', 'dpkg-query', 'enchant', 'g_select_d', 'lspgpot', 'telnet', 'py3clean', 'dh_fixperms', 'g_rotmat_d', 'autogen', 'ompi-server', 'pygettext3', 'pdb3.4', 'chattr', 'printenv', 'ngettext', 'preconv', 'ldd', 'dpkg-source', 'gedit', 'g_lie', 'rpm', 'unlzma', 'xxd', 'uxterm', 'obminimize', 'clang-check-3.5', 'printf', 'g_confrms_d', 'top', 'ssh-agent', 'lsb_release', 'dbus-launch', 'setarch', 'grub-mkrelpath', 'x86_64-linux-gnu-gfortran-4.8', 'dpkg-split', 'on_ac_power', 'genbox_d', 'iceauth', 'g_spol_d', 'xlsclients', 'dh_installxfonts', 'sfparse', 'x86_64-linux-gnu-cpp-4.8', 'dotlockfile', 'wpa_passphrase', 'pldd', 'mysql_fix_extensions', 'gdebi', 'g_sorient_d', 'x86_64-linux-gnu-python-config', 'dh_pypy', 'dpkg-gencontrol', 'xpm2ps_d', 'orted', 'llvm-as-3.4', 'llvm-mc-3.4', 'emacs', 'splain', 'g_nmeig_d', 'aptitude-run-state-bundle', 'trjcat', 'aptitude-create-state-bundle', 'ncursesw5-config', 'f2py2.7', 'icu-config', 'gslj', 'info', 'etags', 'byobu-tmux', 'intltoolize', '*', 'dh_suidregister', 'pycompile', 'xfd', 'msgunfmt', 'gtbl', 'ri1.9.1', 'gracebat', 'git-shell', 'loadkeys', 'x86_64-linux-gnu-objdump', 'gcc-ar', 'fdf2fit', 'reset', 'logger', 'dh_gconf', 'sg', 'gconf-merge-tree', 'eneconv_d', 'rpmdb', 'join', 'gcov-4.8', 'dh_installdocs', 'savelog', 'rake1.9.1', 'llvm-diff', 'byobu-janitor', 'genion_d', 'xzcmp', 'x86_64-linux-gnu-gprof', 'llvm-ar', 'grub-syslinux2cfg', 'xmessage', 'svnlook', 'dpkg-checkbuilddeps', 'xhost', 'gcov-tool', 'nvidia-debugdump', 'traceroute6', 'x86_64-linux-gnu-python3.4m-config', 'c89', 'mpiexec.openmpi', 'dh_listpackages', 'prename', 'g_angle_d', 'w', 'g_mdmat', 'dbilogstrip', 'inxi', 'xdg-icon-resource', 'edit', 'byobu-screen', 'do_dssp_d', 'diff3', 'ntpsweep', 'x86_64-linux-gnu-gcc-4.9', 'setxkbmap', 'intltool-merge', 'uptime', 'pygettext2.7', 'dh_dkms', 'test', 'x86_64-linux-gnu-python3.4-config', 'dh_bash-completion', 'g_analyze', 'tr', 'basename', 'opal_wrapper', 'llvm-dis-3.4', 'opalcc', 'mdrun_d', 'unlink', 'grub-mknetdir', 'g_covar_d', 'ubuntu-support-status', 'xlsfonts', 'gpgv', 'llvm-diff-3.4', 'taskset', 'colrm', 'orte-top', 'munge', 'faked-tcp', 'g_sorient', 'wc', 'aptitude', 'x86_64-linux-gnu-elfedit', 'gtester', 'msgcmp', 'pathchk', 'mysqlshow', 'llvm-objdump-3.4', 'grace', 'glib-genmarshal', 'vi', 'python2.7', 'llvm-dis-3.5', 'llvm-profdata-3.5', 'envsubst', 'xzegrep', 'g_hydorder_d', 'pod2html', 'slabtop', 'xset', 'pilconvert', 'getfacl', 'dvipdf', 'stat', 'x86_64-linux-gnu-gcc', 'pkcheck', 'printerbanner', 'install', 'w3m', 'c++', 'g_protonate', 'g_sigeps_d', 'byobu-ugraph', 'byobu-keybindings', 'g_dielectric_d', 'update-gconf-defaults', 'mpif90.openmpi', 'gcc-ranlib-4.8', 'x86_64-linux-gnu-cpp-5', 'nslookup', 'rdoc', 'obgrep', 'x86_64-linux-gnu-gcc-ar', 'cvtenc', 'pdb2.7', 'g_spatial_d', 'alien', 'resize', 'dh_desktop', 'macho-dump', 'g_gyrate', 'llvm-config-3.4', 'gnome-help', 'mysql_waitpid', 'twistd', 'easy_install-3.4', 'readelf', 'grub-mkimage', 'dh_scour', 'gsbj', 'gspath', 'dpkg', 'fakeroot', 'colormgr', 'gdialog', 'g_potential', 'troff', 'make_ndx', 'zxpdf', 'pkaction', 'g_polystat_d', 'easy_install3', 'dh_installinit', 'gettextize', 'run-this-one', 'updatedb.mlocate', 'passwd', 'grub-editenv', 'llvm-as-3.5', 'factor', 'dh_translations', 'vim.tiny', 'xsetpointer', 'dh_perl', 'xkbprint', 'g_sham_d', 'select-editor', 'llvm-nm-3.5', 'debconf-escape', 'llvm-rtdyld-3.4', 'prtstat', 'g_dyndom_d', 'gsettings-schema-convert', 'ntfsdecrypt', 'update-perl-sax-parsers', 'aubrsync', 'g_h2order_d', 'g_sas', 'x86_64-linux-gnu-gcov-4.9', 'g_hbond_d', 'ionice', 'dh_installdeb', 'chrt', 'x86_64-linux-gnu-objcopy', 'infotocap', 'pinky', 'ftp', 'ptar', 'getconf', 'pfbtopfa', 'see', 'rpmbuild', 'setpci', 'gtf', 'pilfont.py', 'x-terminal-emulator', 'nroff', 'obrotate', 'renice', 'logname', 'podselect', 'g_rotmat', 'x86_64-linux-gnu-gcc-nm-4.8', 'newgrp', 'dh_installcron', 'unzip', 'head', 'dpkg-parsechangelog', 'ssh-copy-id', 'gview', 'luit', 'g_dist_d', 'shred', 'dh_autotools-dev_updateconfig', 'Xorg', 'g_helix_d', 'debconf-set-selections', 'g_sgangle', 'mail-unlock', 'x86_64-linux-gnu-gcc-nm-5', 'byobu-disable', 'tracepath', 'rcp', 'last', 'word-list-compress', 'ntptrace', 'utmpdump', 'infocmp', 'llvm-ar-3.4', 'which', 'mysqlcheck', 'chcon', 'hexdump', 'autom4te', 'x86_64-linux-gnu-gcc-ranlib', 'lspci', 'xkeystone', 'R', 'bsd-mailx', 'col', 'gsnd', 'g_rmsf_d', 'calendar', 'g_helixorient_d', 'gvim', 'obprobe', 'g_rmsf', 'lastb', 'm4', 'rvim', 'most', 'nice', 'g_bond', 'podchecker', 'make_ndx_d', 'file', 'cvt', 'dig', 'gpic', 'dpkg-scanpackages', 'msginit', 'xmgrace', 'dh_gencontrol', 'trjorder', 'dh_installmanpages', 'ruby', 'apt-mark', 'chardetect3', 'nvidia-smi', 'byobu-status-detail', 'usbhid-dump', 'aptitude-curses', 'zsoelim', 'mysqlrepair', 'g_bundle', 'g_vanhove_d', 'testrb', 'python3.4m', 'rpmverify', 'x86_64-linux-gnu-ld', 'x86_64-linux-gnu-gcov', 'aubusy', 'orte-clean', 'smem', 'c_rehash', 'dpkg-distaddfile', 'xsubpp', 'byobu-launch', 'select-default-iwrap', 'chardet3', 'mailx', 'lzdiff', 'irb', 'fold', 'python-config', 'sudoedit', 'unicode_stop', 'lessecho', 'add-apt-repository', 'dpkg-vendor', 'xdg-mime', 'py3versions', 'debconf-updatepo', 'pydoc2.7', 'f2py3', 'dh_installwm', 'llvm-cov-3.4', 'g_rmsdist', 'hsmarkdown', 'pod2man', 'po2debconf', 'dh_auto_install', 'listres', 'dh_testdir', 'hwe-support-status', 'grog', 'xpdf', '2to3', 'nosetests3', 'dbiproxy', 'g_x2top', 'x86_64-linux-gnu-strip', 'whatis', 'python3m-config', 'vmstat', 'pkill', 'xml2-config', 'llvm-link-3.4', 'llvm-ld', 'pilprint.py', 'bcp', 'g_tune_pme_d', 'x86_64-linux-gnu-addr2line', 'opentool', 'irb1.9.1', 'ispell-wrapper', 'pager', 'gvimdiff', 'gcc-ranlib-5', 'python3.4', 'g_rotacf_d', 'addr2line', 'ccze-cssdump', 'expand', 'clang-tblgen-3.5', 'dh_lintian', 'xmlparse', 'updatedb', 'mysqldumpslow', 'iptables-xml', 'setkeycodes', 'g++', 'ebrowse', 'grub-file', 'captoinfo', 'byobu-launcher', 'tapconvert', 'ld', 'orteCC', 'gcc-nm', 'pkgdata', 'uconv', 'msgmerge', 'clang-query-3.5', 'nosetests-2.7', 'xzgrep', 'enchant-lsmod', 'HTMLLinker', 'strace', 'rev', 'nohup', 'run-one-until-failure', 'dpkg-divert', 'localedef', 'zipcloak', 'x86_64-linux-gnu-dwp', 'remunge', 'g_order', 'mpif90', 'getdefs', 'manpath', 'pkg-config', 'h2xs', 'md5sum', 'emacsclient.emacs24', 'g_enemat', 'python3.4-config', 'linux-update-symlinks', 'pico', 'dh_compress', 'gdbus', 'g_rms_d', 'script', 'recode-sr-latin', 'zipdetails', 'llvm-readobj-3.5', 'scan-view-3.5', 'svn-rep-sharing-stats', 'os-prober', 'svnserve', 'g_disre', 'unzipsfx', 'bdftopcf', 'apropos', 'xdg-email', 'encguess', 'lastlog', 'obconformer', 'anaconda2', 'mysqldump', 'POST', 'byobu-ulevel', 'rgview', 'llvm-symbolizer-3.4', 'sensible-browser', 'lwp-dump', 'grub-kbdcomp', 'vimtutor', 'g_wham_d', 'apt-sortpkgs', 'fonttosfnt', 'apport-cli', 'ctstat', 'rpmgraph', 'strip', 'svnsync', 'g_cluster_d', 'mysqladmin', 'llvm-mcmarkup-3.5', 'comm', 'llvm-cov-3.5', 'xdg-settings', 'lxterm', 'nm', 'grops', 'csplit', 'xkbvleds', 'dbus-daemon', 'llvm-size', 'mail-touchlock', 'tracepath6', 'obenergy', 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'fc-list', 'mysql_config', 'aspell-import', 'zeitgeist-datahub', 'ssh-import-id-gh', 'llvm-config', 'genrestr', 'ssh-import-id-lp', 'mysql_zap', 'ssh-keyscan', 'gettext.sh', 'openbox', 'g_h2order', 'eview', 'deb-systemd-invoke', 'grub-glue-efi', 'htop', 'unexpand', 'macho-dump-3.5', 'expr', 'gcc-4.9', 'g_densorder', 'cpan5.22-x86_64-linux-gnu', 'g_densmap_d', 'from', 'llvm-diff-3.5', 'xstdcmap', 'autoreconf', 'x86_64-linux-gnu-cpp-4.9', 'plog', 'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 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'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Bfort not found. Installing sowing for FortranStubs ================================================================================ TEST consistencyChecks from config.packages.sowing(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.sowing(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.sowing(/home/fbrarda/petsc/config/BuildSystem/config/package.py:870) TESTING: checkDependencies from config.packages.sowing(config/BuildSystem/config/package.py:870) ================================================================================ TEST configureLibrary from config.packages.sowing(/home/fbrarda/petsc/config/BuildSystem/config/package.py:895) TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing'] Could not locate an existing copy of SOWING: ['mpich-3.3.2'] Downloading sowing =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-sowing.git for SOWING =============================================================================== ERROR: Unable to download sowing Could not execute "['git clone https://bitbucket.org/petsc/pkg-sowing.git /home/fbrarda/petsc/arch-opt/externalpackages/git.sowing']": Cloning into '/home/fbrarda/petsc/arch-opt/externalpackages/git.sowing'... fatal: unable to access 'https://bitbucket.org/petsc/pkg-sowing.git/': gnutls_handshake() failed: Handshake failed Unable to download package SOWING from: git://https://bitbucket.org/petsc/pkg-sowing.git * If URL specified manually - perhaps there is a typo? * If your network is disconnected - please reconnect and rerun ./configure * Or perhaps you have a firewall blocking the download * You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually * or you can download the above URL manually, to /yourselectedlocation and use the configure option: --download-sowing=/yourselectedlocation =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-sowing.git for SOWING =============================================================================== ERROR: Unable to download sowing Could not execute "['git clone https://bitbucket.org/petsc/pkg-sowing.git /home/fbrarda/petsc/arch-opt/externalpackages/git.sowing']": Cloning into '/home/fbrarda/petsc/arch-opt/externalpackages/git.sowing'... fatal: unable to access 'https://bitbucket.org/petsc/pkg-sowing.git/': gnutls_handshake() failed: Handshake failed Unable to download package SOWING from: git://https://bitbucket.org/petsc/pkg-sowing.git * If URL specified manually - perhaps there is a typo? * If your network is disconnected - please reconnect and rerun ./configure * Or perhaps you have a firewall blocking the download * You can run with --with-packages-download-dir=/adirectory and ./configure will instruct you what packages to download manually * or you can download the above URL manually, to /yourselectedlocation and use the configure option: --download-sowing=/yourselectedlocation =============================================================================== Trying to download https://bitbucket.org/petsc/pkg-sowing/get/v1.1.26-p1.tar.gz for SOWING =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://bitbucket.org/petsc/pkg-sowing.git /home/fbrarda/petsc/arch-opt/externalpackages/git.sowing ERROR: Could not execute "['git clone https://bitbucket.org/petsc/pkg-sowing.git /home/fbrarda/petsc/arch-opt/externalpackages/git.sowing']": Cloning into '/home/fbrarda/petsc/arch-opt/externalpackages/git.sowing'... fatal: unable to access 'https://bitbucket.org/petsc/pkg-sowing.git/': gnutls_handshake() failed: Handshake failed Running Executable WITHOUT threads to time it out Executing: git clone https://bitbucket.org/petsc/pkg-sowing.git /home/fbrarda/petsc/arch-opt/externalpackages/git.sowing ERROR: Could not execute "['git clone https://bitbucket.org/petsc/pkg-sowing.git /home/fbrarda/petsc/arch-opt/externalpackages/git.sowing']": Cloning into '/home/fbrarda/petsc/arch-opt/externalpackages/git.sowing'... fatal: unable to access 'https://bitbucket.org/petsc/pkg-sowing.git/': gnutls_handshake() failed: Handshake failed Downloading https://bitbucket.org/petsc/pkg-sowing/get/v1.1.26-p1.tar.gz to /home/fbrarda/petsc/arch-opt/externalpackages/_d_v1.1.26-p1.tar.gz Extracting /home/fbrarda/petsc/arch-opt/externalpackages/_d_v1.1.26-p1.tar.gz Running Executable WITHOUT threads to time it out Executing: cd /home/fbrarda/petsc/arch-opt/externalpackages; chmod -R a+r petsc-pkg-sowing-674d5f3c1bf3;find petsc-pkg-sowing-674d5f3c1bf3 -type d -name "*" -exec chmod a+rx {} \; Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing'] Found a copy of SOWING in petsc-pkg-sowing-674d5f3c1bf3 SOWING was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Running configure on SOWING; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./configure --prefix=/home/fbrarda/petsc/arch-opt stdout: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... no checking for gs... /usr/bin/gs checking for pnmcrop... no checking for pbmtoxbm... no checking for ppmtogif... no checking for pnmquant... no checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for egrep... /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/bfort/Makefile config.status: creating docs/doctext/Makefile config.status: creating docs/install/Makefile config.status: creating docs/tohtml/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating src/bfort/testing2/Makefile config.status: creating include/sowingconfig.h config.status: executing bib2html commands =============================================================================== Running make on SOWING; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make clean stdout: for dir in src docs ; do ( cd $dir && /usr/bin/make clean ) ; done make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/make clean ) ; done make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/sys' rm -f *.o *~ make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/sys' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort' rm -f *.o *~ bfort-old bfort rm -f bfort\ win32/debug/* rm -f *.gcda *.gcno *.gcov (cd testing && /usr/bin/make clean ) make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort/testing' rm -f n1f.c n2f.c tstpgmaf.c tstpgma2f.c tstpgmbf.c tstcf.c tst2cf.c tst3cf.c tstpgmaf90.f90 tstpgmbf90.f90 config.log make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort/testing' (cd testing2 && /usr/bin/make clean ) make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort/testing2' rm -f tbasef.c tbasef2.c tbasef3.c tbasef4.c tcharf.c tcharf2.c tmpif.c tretf.c tpetscf.c thandlef.c theadhf.c tmp/tbasef.c tmp/tbasef2.c tpetsc.f90 thandle.f90 malformf.c tbaserm.c rm -rf tmp make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort/testing2' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/make clean ) make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml/testing' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/make clean ; fi ) make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext/test' rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext/test' /bin/rm -f doctext\ win32/debug/* make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' /bin/rm -f *.o *~ make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/mapnames' /bin/rm -f *.o *~ mapnames ccc test1.html test1.tex test1nc.tex test1nc.html test1.pmap make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/mapnames' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bib2html' rm -f tout.htm tout-bib.htm make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bib2html' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src' make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/bfort' rm -f bfort.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/bfort' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/doctext' rm -f doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/doctext' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/install' rm -f install.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/install' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/tohtml' rm -f tohtml.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/tohtml' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a Running Executable WITHOUT threads to time it out Executing: /usr/bin/make stdout: (cd src/sys && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/sys' (cd src/tohtml && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml' gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml' (cd src/bfort && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort' gcc -DBASEDEF='"/home/fbrarda/petsc/arch-opt/share/bfort-base.txt"' -DBASEPATH='"/home/fbrarda/petsc/arch-opt/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/home/fbrarda/petsc/arch-opt/share/bfort-base.txt"' -DBASEPATH='"/home/fbrarda/petsc/arch-opt/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort' (cd src/textfilt && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' (cd src/doctext && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext' (cd src/textfilt && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' make[1]: Nothing to be done for `ALL'. make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' (cd src/mapnames && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/mapnames' =============================================================================== Running make install on SOWING; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make install stdout: /usr/bin/install -c bin/bib2html /home/fbrarda/petsc/arch-opt/bin/bib2html /usr/bin/install -c src/doctext/doctext /home/fbrarda/petsc/arch-opt/bin/doctext /usr/bin/install -c src/doctext/doc2lt /home/fbrarda/petsc/arch-opt/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /home/fbrarda/petsc/arch-opt/bin/tohtml if [ "`cd bin && pwd`" != "`cd /home/fbrarda/petsc/arch-opt/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /home/fbrarda/petsc/arch-opt/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /home/fbrarda/petsc/arch-opt/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /home/fbrarda/petsc/arch-opt/bin/bfort /usr/bin/install -c src/mapnames/mapnames /home/fbrarda/petsc/arch-opt/bin/mapnames INSTALL_DATA ./share/pstoppm.ps /home/fbrarda/petsc/arch-opt/share/pstoppm.ps INSTALL_DATA ./share/basedefs.txt /home/fbrarda/petsc/arch-opt/share/basedefs.txt INSTALL_DATA ./share/blueball.gif /home/fbrarda/petsc/arch-opt/share/blueball.gif INSTALL_DATA ./share/greenball.gif /home/fbrarda/petsc/arch-opt/share/greenball.gif INSTALL_DATA ./share/purpleball.gif /home/fbrarda/petsc/arch-opt/share/purpleball.gif INSTALL_DATA ./share/redball.gif /home/fbrarda/petsc/arch-opt/share/redball.gif INSTALL_DATA ./share/yellowball.gif /home/fbrarda/petsc/arch-opt/share/yellowball.gif INSTALL_DATA ./share/next.gif /home/fbrarda/petsc/arch-opt/share/next.gif INSTALL_DATA ./share/up.gif /home/fbrarda/petsc/arch-opt/share/up.gif INSTALL_DATA ./share/previous.gif /home/fbrarda/petsc/arch-opt/share/previous.gif INSTALL_DATA ./share/html.def /home/fbrarda/petsc/arch-opt/share/html.def INSTALL_DATA ./share/latex.def /home/fbrarda/petsc/arch-opt/share/latex.def INSTALL_DATA ./share/nroff.def /home/fbrarda/petsc/arch-opt/share/nroff.def INSTALL_DATA ./share/refman.def /home/fbrarda/petsc/arch-opt/share/refman.def INSTALL_DATA ./share/refman.sty /home/fbrarda/petsc/arch-opt/share/refman.sty INSTALL_DATA ./share/next.xbm /home/fbrarda/petsc/arch-opt/share/next.xbm INSTALL_DATA ./share/up.xbm /home/fbrarda/petsc/arch-opt/share/up.xbm INSTALL_DATA ./share/previous.xbm /home/fbrarda/petsc/arch-opt/share/previous.xbm INSTALL_DATA ./share/doctext/html.def /home/fbrarda/petsc/arch-opt/share/doctext/html.def INSTALL_DATA ./share/doctext/htmlcolor.def /home/fbrarda/petsc/arch-opt/share/doctext/htmlcolor.def INSTALL_DATA ./share/doctext/htmltabl.def /home/fbrarda/petsc/arch-opt/share/doctext/htmltabl.def INSTALL_DATA ./share/doctext/htmlargtbl.def /home/fbrarda/petsc/arch-opt/share/doctext/htmlargtbl.def INSTALL_DATA ./share/doctext/latex.def /home/fbrarda/petsc/arch-opt/share/doctext/latex.def INSTALL_DATA ./share/doctext/latexargtbl.def /home/fbrarda/petsc/arch-opt/share/doctext/latexargtbl.def INSTALL_DATA ./share/doctext/nroff.def /home/fbrarda/petsc/arch-opt/share/doctext/nroff.def INSTALL_DATA ./share/bfort-base.txt /home/fbrarda/petsc/arch-opt/share/bfort-base.txt INSTALL_DATA ./share/bfort-mpi.txt /home/fbrarda/petsc/arch-opt/share/bfort-mpi.txt INSTALL_DATA ./share/bfort-petsc.txt /home/fbrarda/petsc/arch-opt/share/bfort-petsc.txt INSTALL_DATA ./man/man1/tohtml.1 /home/fbrarda/petsc/arch-opt/share/man/man1/tohtml.1 INSTALL_DATA ./man/man1/doctext.1 /home/fbrarda/petsc/arch-opt/share/man/man1/doctext.1 INSTALL_DATA ./man/man1/bfort.1 /home/fbrarda/petsc/arch-opt/share/man/man1/bfort.1 ********Output of running make on SOWING follows ******* checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... no checking for gs... /usr/bin/gs checking for pnmcrop... no checking for pbmtoxbm... no checking for ppmtogif... no checking for pnmquant... no checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for egrep... /bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/bfort/Makefile config.status: creating docs/doctext/Makefile config.status: creating docs/install/Makefile config.status: creating docs/tohtml/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating src/bfort/testing2/Makefile config.status: creating include/sowingconfig.h config.status: executing bib2html commandsfor dir in src docs ; do ( cd $dir && /usr/bin/make clean ) ; done make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/make clean ) ; done make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/sys' rm -f *.o *~ make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/sys' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort' rm -f *.o *~ bfort-old bfort rm -f bfort\ win32/debug/* rm -f *.gcda *.gcno *.gcov (cd testing && /usr/bin/make clean ) make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort/testing' rm -f n1f.c n2f.c tstpgmaf.c tstpgma2f.c tstpgmbf.c tstcf.c tst2cf.c tst3cf.c tstpgmaf90.f90 tstpgmbf90.f90 config.log make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort/testing' (cd testing2 && /usr/bin/make clean ) make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort/testing2' rm -f tbasef.c tbasef2.c tbasef3.c tbasef4.c tcharf.c tcharf2.c tmpif.c tretf.c tpetscf.c thandlef.c theadhf.c tmp/tbasef.c tmp/tbasef2.c tpetsc.f90 thandle.f90 malformf.c tbaserm.c rm -rf tmp make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort/testing2' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/make clean ) make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml/testing' make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/make clean ; fi ) make[3]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext/test' rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit make[3]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext/test' /bin/rm -f doctext\ win32/debug/* make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' /bin/rm -f *.o *~ make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/mapnames' /bin/rm -f *.o *~ mapnames ccc test1.html test1.tex test1nc.tex test1nc.html test1.pmap make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/mapnames' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bib2html' rm -f tout.htm tout-bib.htm make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bib2html' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src' make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/bfort' rm -f bfort.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/bfort' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/doctext' rm -f doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/doctext' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/install' rm -f install.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/install' make[2]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/tohtml' rm -f tohtml.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs/tohtml' make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a(cd src/sys && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/sys' (cd src/tohtml && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml' gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/tohtml' (cd src/bfort && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort' gcc -DBASEDEF='"/home/fbrarda/petsc/arch-opt/share/bfort-base.txt"' -DBASEPATH='"/home/fbrarda/petsc/arch-opt/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/home/fbrarda/petsc/arch-opt/share/bfort-base.txt"' -DBASEPATH='"/home/fbrarda/petsc/arch-opt/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/bfort' (cd src/textfilt && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' (cd src/doctext && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/doctext' (cd src/textfilt && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' make[1]: Nothing to be done for `ALL'. make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/textfilt' (cd src/mapnames && /usr/bin/make ) make[1]: Entering directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a make[1]: Leaving directory `/home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3/src/mapnames'../../lib/libsowing.a(file.o): In function `SYOpenWritableFile': file.c:(.text+0xdb4): warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' ../../lib/libsowing.a(file.o): In function `SYOpenWritableFile': file.c:(.text+0xdb4): warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' /usr/bin/install -c bin/bib2html /home/fbrarda/petsc/arch-opt/bin/bib2html /usr/bin/install -c src/doctext/doctext /home/fbrarda/petsc/arch-opt/bin/doctext /usr/bin/install -c src/doctext/doc2lt /home/fbrarda/petsc/arch-opt/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /home/fbrarda/petsc/arch-opt/bin/tohtml if [ "`cd bin && pwd`" != "`cd /home/fbrarda/petsc/arch-opt/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /home/fbrarda/petsc/arch-opt/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /home/fbrarda/petsc/arch-opt/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /home/fbrarda/petsc/arch-opt/bin/bfort /usr/bin/install -c src/mapnames/mapnames /home/fbrarda/petsc/arch-opt/bin/mapnames INSTALL_DATA ./share/pstoppm.ps /home/fbrarda/petsc/arch-opt/share/pstoppm.ps INSTALL_DATA ./share/basedefs.txt /home/fbrarda/petsc/arch-opt/share/basedefs.txt INSTALL_DATA ./share/blueball.gif /home/fbrarda/petsc/arch-opt/share/blueball.gif INSTALL_DATA ./share/greenball.gif /home/fbrarda/petsc/arch-opt/share/greenball.gif INSTALL_DATA ./share/purpleball.gif /home/fbrarda/petsc/arch-opt/share/purpleball.gif INSTALL_DATA ./share/redball.gif /home/fbrarda/petsc/arch-opt/share/redball.gif INSTALL_DATA ./share/yellowball.gif /home/fbrarda/petsc/arch-opt/share/yellowball.gif INSTALL_DATA ./share/next.gif /home/fbrarda/petsc/arch-opt/share/next.gif INSTALL_DATA ./share/up.gif /home/fbrarda/petsc/arch-opt/share/up.gif INSTALL_DATA ./share/previous.gif /home/fbrarda/petsc/arch-opt/share/previous.gif INSTALL_DATA ./share/html.def /home/fbrarda/petsc/arch-opt/share/html.def INSTALL_DATA ./share/latex.def /home/fbrarda/petsc/arch-opt/share/latex.def INSTALL_DATA ./share/nroff.def /home/fbrarda/petsc/arch-opt/share/nroff.def INSTALL_DATA ./share/refman.def /home/fbrarda/petsc/arch-opt/share/refman.def INSTALL_DATA ./share/refman.sty /home/fbrarda/petsc/arch-opt/share/refman.sty INSTALL_DATA ./share/next.xbm /home/fbrarda/petsc/arch-opt/share/next.xbm INSTALL_DATA ./share/up.xbm /home/fbrarda/petsc/arch-opt/share/up.xbm INSTALL_DATA ./share/previous.xbm /home/fbrarda/petsc/arch-opt/share/previous.xbm INSTALL_DATA ./share/doctext/html.def /home/fbrarda/petsc/arch-opt/share/doctext/html.def INSTALL_DATA ./share/doctext/htmlcolor.def /home/fbrarda/petsc/arch-opt/share/doctext/htmlcolor.def INSTALL_DATA ./share/doctext/htmltabl.def /home/fbrarda/petsc/arch-opt/share/doctext/htmltabl.def INSTALL_DATA ./share/doctext/htmlargtbl.def /home/fbrarda/petsc/arch-opt/share/doctext/htmlargtbl.def INSTALL_DATA ./share/doctext/latex.def /home/fbrarda/petsc/arch-opt/share/doctext/latex.def INSTALL_DATA ./share/doctext/latexargtbl.def /home/fbrarda/petsc/arch-opt/share/doctext/latexargtbl.def INSTALL_DATA ./share/doctext/nroff.def /home/fbrarda/petsc/arch-opt/share/doctext/nroff.def INSTALL_DATA ./share/bfort-base.txt /home/fbrarda/petsc/arch-opt/share/bfort-base.txt INSTALL_DATA ./share/bfort-mpi.txt /home/fbrarda/petsc/arch-opt/share/bfort-mpi.txt INSTALL_DATA ./share/bfort-petsc.txt /home/fbrarda/petsc/arch-opt/share/bfort-petsc.txt INSTALL_DATA ./man/man1/tohtml.1 /home/fbrarda/petsc/arch-opt/share/man/man1/tohtml.1 INSTALL_DATA ./man/man1/doctext.1 /home/fbrarda/petsc/arch-opt/share/man/man1/doctext.1 INSTALL_DATA ./man/man1/bfort.1 /home/fbrarda/petsc/arch-opt/share/man/man1/bfort.1********End of Output of running make on SOWING ******* Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download SOWING: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Found header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Checking for headers [] in Download SOWING: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkVersion from config.packages.sowing(/home/fbrarda/petsc/config/BuildSystem/config/package.py:1024) TESTING: checkVersion from config.packages.sowing(config/BuildSystem/config/package.py:1024) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For sowing unable to find version information since includes and version includes are missing skipping version check ================================================================================ TEST checkSharedLibrary from config.packages.sowing(/home/fbrarda/petsc/config/BuildSystem/config/package.py:953) TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared Checking for program /home/fbrarda/petsc/arch-opt/bin/bfort...found Defined make macro "BFORT" to "/home/fbrarda/petsc/arch-opt/bin/bfort" Checking for program /home/fbrarda/petsc/arch-opt/bin/doctext...found Defined make macro "DOCTEXT" to "/home/fbrarda/petsc/arch-opt/bin/doctext" Checking for program /home/fbrarda/petsc/arch-opt/bin/mapnames...found Defined make macro "MAPNAMES" to "/home/fbrarda/petsc/arch-opt/bin/mapnames" Checking for program /home/fbrarda/petsc/arch-opt/bin/bib2html...found Defined make macro "BIB2HTML" to "/home/fbrarda/petsc/arch-opt/bin/bib2html" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/bfort -version stdout: bfort (sowing) release 1.1.26 of Date unknown Running /home/fbrarda/petsc/arch-opt/bin/bfort to generate fortran stubs child config.packages.sowing 20.075538 ================================================================================ TEST consistencyChecks from config.packages.revolve(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.003669 ================================================================================ TEST consistencyChecks from config.packages.radau5(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.radau5(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.002759 ================================================================================ TEST consistencyChecks from config.packages.pami(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.002352 ================================================================================ TEST consistencyChecks from config.packages.opengles(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.002342 ================================================================================ TEST consistencyChecks from config.packages.opencl(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.002332 ================================================================================ TEST consistencyChecks from config.packages.muparser(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.muparser(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.002686 ================================================================================ TEST consistencyChecks from config.packages.mpe(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.002695 ================================================================================ TEST consistencyChecks from config.packages.memkind(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.memkind(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.002359 ================================================================================ TEST consistencyChecks from config.packages.libmesh(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.libmesh(/home/fbrarda/petsc/config/BuildSystem/config/packages/libmesh.py:76) TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.003264 ================================================================================ TEST consistencyChecks from config.packages.moose(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.moose(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.002423 ================================================================================ TEST consistencyChecks from config.packages.libjpeg(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.002661 ================================================================================ TEST consistencyChecks from config.packages.libceed(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.libceed(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.002660 Checking for program /usr/local/sbin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/games/lgrind...not found Checking for program /usr/local/games/lgrind...not found Checking for program /usr/bin/anaconda2/bin/lgrind...not found Checking for program /opt/slurm/14.11.3/bin/lgrind...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/lgrind...not found Unable to find programs ['lgrind'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 'g_anaeig', 'lwp-mirror', 'lesspipe', 'dpkg-query', 'enchant', 'g_select_d', 'lspgpot', 'telnet', 'py3clean', 'dh_fixperms', 'g_rotmat_d', 'autogen', 'ompi-server', 'pygettext3', 'pdb3.4', 'chattr', 'printenv', 'ngettext', 'preconv', 'ldd', 'dpkg-source', 'gedit', 'g_lie', 'rpm', 'unlzma', 'xxd', 'uxterm', 'obminimize', 'clang-check-3.5', 'printf', 'g_confrms_d', 'top', 'ssh-agent', 'lsb_release', 'dbus-launch', 'setarch', 'grub-mkrelpath', 'x86_64-linux-gnu-gfortran-4.8', 'dpkg-split', 'on_ac_power', 'genbox_d', 'iceauth', 'g_spol_d', 'xlsclients', 'dh_installxfonts', 'sfparse', 'x86_64-linux-gnu-cpp-4.8', 'dotlockfile', 'wpa_passphrase', 'pldd', 'mysql_fix_extensions', 'gdebi', 'g_sorient_d', 'x86_64-linux-gnu-python-config', 'dh_pypy', 'dpkg-gencontrol', 'xpm2ps_d', 'orted', 'llvm-as-3.4', 'llvm-mc-3.4', 'emacs', 'splain', 'g_nmeig_d', 'aptitude-run-state-bundle', 'trjcat', 'aptitude-create-state-bundle', 'ncursesw5-config', 'f2py2.7', 'icu-config', 'gslj', 'info', 'etags', 'byobu-tmux', 'intltoolize', '*', 'dh_suidregister', 'pycompile', 'xfd', 'msgunfmt', 'gtbl', 'ri1.9.1', 'gracebat', 'git-shell', 'loadkeys', 'x86_64-linux-gnu-objdump', 'gcc-ar', 'fdf2fit', 'reset', 'logger', 'dh_gconf', 'sg', 'gconf-merge-tree', 'eneconv_d', 'rpmdb', 'join', 'gcov-4.8', 'dh_installdocs', 'savelog', 'rake1.9.1', 'llvm-diff', 'byobu-janitor', 'genion_d', 'xzcmp', 'x86_64-linux-gnu-gprof', 'llvm-ar', 'grub-syslinux2cfg', 'xmessage', 'svnlook', 'dpkg-checkbuilddeps', 'xhost', 'gcov-tool', 'nvidia-debugdump', 'traceroute6', 'x86_64-linux-gnu-python3.4m-config', 'c89', 'mpiexec.openmpi', 'dh_listpackages', 'prename', 'g_angle_d', 'w', 'g_mdmat', 'dbilogstrip', 'inxi', 'xdg-icon-resource', 'edit', 'byobu-screen', 'do_dssp_d', 'diff3', 'ntpsweep', 'x86_64-linux-gnu-gcc-4.9', 'setxkbmap', 'intltool-merge', 'uptime', 'pygettext2.7', 'dh_dkms', 'test', 'x86_64-linux-gnu-python3.4-config', 'dh_bash-completion', 'g_analyze', 'tr', 'basename', 'opal_wrapper', 'llvm-dis-3.4', 'opalcc', 'mdrun_d', 'unlink', 'grub-mknetdir', 'g_covar_d', 'ubuntu-support-status', 'xlsfonts', 'gpgv', 'llvm-diff-3.4', 'taskset', 'colrm', 'orte-top', 'munge', 'faked-tcp', 'g_sorient', 'wc', 'aptitude', 'x86_64-linux-gnu-elfedit', 'gtester', 'msgcmp', 'pathchk', 'mysqlshow', 'llvm-objdump-3.4', 'grace', 'glib-genmarshal', 'vi', 'python2.7', 'llvm-dis-3.5', 'llvm-profdata-3.5', 'envsubst', 'xzegrep', 'g_hydorder_d', 'pod2html', 'slabtop', 'xset', 'pilconvert', 'getfacl', 'dvipdf', 'stat', 'x86_64-linux-gnu-gcc', 'pkcheck', 'printerbanner', 'install', 'w3m', 'c++', 'g_protonate', 'g_sigeps_d', 'byobu-ugraph', 'byobu-keybindings', 'g_dielectric_d', 'update-gconf-defaults', 'mpif90.openmpi', 'gcc-ranlib-4.8', 'x86_64-linux-gnu-cpp-5', 'nslookup', 'rdoc', 'obgrep', 'x86_64-linux-gnu-gcc-ar', 'cvtenc', 'pdb2.7', 'g_spatial_d', 'alien', 'resize', 'dh_desktop', 'macho-dump', 'g_gyrate', 'llvm-config-3.4', 'gnome-help', 'mysql_waitpid', 'twistd', 'easy_install-3.4', 'readelf', 'grub-mkimage', 'dh_scour', 'gsbj', 'gspath', 'dpkg', 'fakeroot', 'colormgr', 'gdialog', 'g_potential', 'troff', 'make_ndx', 'zxpdf', 'pkaction', 'g_polystat_d', 'easy_install3', 'dh_installinit', 'gettextize', 'run-this-one', 'updatedb.mlocate', 'passwd', 'grub-editenv', 'llvm-as-3.5', 'factor', 'dh_translations', 'vim.tiny', 'xsetpointer', 'dh_perl', 'xkbprint', 'g_sham_d', 'select-editor', 'llvm-nm-3.5', 'debconf-escape', 'llvm-rtdyld-3.4', 'prtstat', 'g_dyndom_d', 'gsettings-schema-convert', 'ntfsdecrypt', 'update-perl-sax-parsers', 'aubrsync', 'g_h2order_d', 'g_sas', 'x86_64-linux-gnu-gcov-4.9', 'g_hbond_d', 'ionice', 'dh_installdeb', 'chrt', 'x86_64-linux-gnu-objcopy', 'infotocap', 'pinky', 'ftp', 'ptar', 'getconf', 'pfbtopfa', 'see', 'rpmbuild', 'setpci', 'gtf', 'pilfont.py', 'x-terminal-emulator', 'nroff', 'obrotate', 'renice', 'logname', 'podselect', 'g_rotmat', 'x86_64-linux-gnu-gcc-nm-4.8', 'newgrp', 'dh_installcron', 'unzip', 'head', 'dpkg-parsechangelog', 'ssh-copy-id', 'gview', 'luit', 'g_dist_d', 'shred', 'dh_autotools-dev_updateconfig', 'Xorg', 'g_helix_d', 'debconf-set-selections', 'g_sgangle', 'mail-unlock', 'x86_64-linux-gnu-gcc-nm-5', 'byobu-disable', 'tracepath', 'rcp', 'last', 'word-list-compress', 'ntptrace', 'utmpdump', 'infocmp', 'llvm-ar-3.4', 'which', 'mysqlcheck', 'chcon', 'hexdump', 'autom4te', 'x86_64-linux-gnu-gcc-ranlib', 'lspci', 'xkeystone', 'R', 'bsd-mailx', 'col', 'gsnd', 'g_rmsf_d', 'calendar', 'g_helixorient_d', 'gvim', 'obprobe', 'g_rmsf', 'lastb', 'm4', 'rvim', 'most', 'nice', 'g_bond', 'podchecker', 'make_ndx_d', 'file', 'cvt', 'dig', 'gpic', 'dpkg-scanpackages', 'msginit', 'xmgrace', 'dh_gencontrol', 'trjorder', 'dh_installmanpages', 'ruby', 'apt-mark', 'chardetect3', 'nvidia-smi', 'byobu-status-detail', 'usbhid-dump', 'aptitude-curses', 'zsoelim', 'mysqlrepair', 'g_bundle', 'g_vanhove_d', 'testrb', 'python3.4m', 'rpmverify', 'x86_64-linux-gnu-ld', 'x86_64-linux-gnu-gcov', 'aubusy', 'orte-clean', 'smem', 'c_rehash', 'dpkg-distaddfile', 'xsubpp', 'byobu-launch', 'select-default-iwrap', 'chardet3', 'mailx', 'lzdiff', 'irb', 'fold', 'python-config', 'sudoedit', 'unicode_stop', 'lessecho', 'add-apt-repository', 'dpkg-vendor', 'xdg-mime', 'py3versions', 'debconf-updatepo', 'pydoc2.7', 'f2py3', 'dh_installwm', 'llvm-cov-3.4', 'g_rmsdist', 'hsmarkdown', 'pod2man', 'po2debconf', 'dh_auto_install', 'listres', 'dh_testdir', 'hwe-support-status', 'grog', 'xpdf', '2to3', 'nosetests3', 'dbiproxy', 'g_x2top', 'x86_64-linux-gnu-strip', 'whatis', 'python3m-config', 'vmstat', 'pkill', 'xml2-config', 'llvm-link-3.4', 'llvm-ld', 'pilprint.py', 'bcp', 'g_tune_pme_d', 'x86_64-linux-gnu-addr2line', 'opentool', 'irb1.9.1', 'ispell-wrapper', 'pager', 'gvimdiff', 'gcc-ranlib-5', 'python3.4', 'g_rotacf_d', 'addr2line', 'ccze-cssdump', 'expand', 'clang-tblgen-3.5', 'dh_lintian', 'xmlparse', 'updatedb', 'mysqldumpslow', 'iptables-xml', 'setkeycodes', 'g++', 'ebrowse', 'grub-file', 'captoinfo', 'byobu-launcher', 'tapconvert', 'ld', 'orteCC', 'gcc-nm', 'pkgdata', 'uconv', 'msgmerge', 'clang-query-3.5', 'nosetests-2.7', 'xzgrep', 'enchant-lsmod', 'HTMLLinker', 'strace', 'rev', 'nohup', 'run-one-until-failure', 'dpkg-divert', 'localedef', 'zipcloak', 'x86_64-linux-gnu-dwp', 'remunge', 'g_order', 'mpif90', 'getdefs', 'manpath', 'pkg-config', 'h2xs', 'md5sum', 'emacsclient.emacs24', 'g_enemat', 'python3.4-config', 'linux-update-symlinks', 'pico', 'dh_compress', 'gdbus', 'g_rms_d', 'script', 'recode-sr-latin', 'zipdetails', 'llvm-readobj-3.5', 'scan-view-3.5', 'svn-rep-sharing-stats', 'os-prober', 'svnserve', 'g_disre', 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'partx', 'deallocvt', 'pydoc3', 'apt-key', 'x86_64-linux-gnu-python2.7-config', 'sum', 'stop-nvidia-persistenced', 'gobject-query', 'glxdemo', 'xvidtune', 'llvm-bcanalyzer-3.5', 'run-one-constantly', 'grub-mount', 'g_tune_pme', 'mysql_install_db', 'lockfile-remove', 'du', 'ps2epsi', 'g_tcaf', 'timeout', 'c++filt', 'size', 'c2ph', 'pdb2gmx', 'yes', 'grub-mkrescue', 'xlsatoms', 'guild', 'g_dyndom', 'dh_installppp', 'sconsign', 'mtr', 'appres', 'x-session-manager', 'bjam', 'mysqlslap', 'enc2xs', 'llvm-stress-3.5', 'llvm-tblgen', 'dh_installlogrotate', 'g_dos', 'tclsh8.4', 'g_options_d', 'opt-3.4', 'zip', 'byobu-config', 'f2py', 'ssh', 'pyversions', 'grub-ntldr-img', 'nsenter', 'lzfgrep', 'g_gyrate_d', 'stdbuf', 'llvm-nm-3.4', 'byobu-select-profile', 'snmpkey', 'obxprop', 'emacs24', 'kbdinfo', 'xauth', 'do_dssp', 'w3mman', 'obprop', 'automake', 'perl5.22-x86_64-linux-gnu', 'setleds', 'setfacl', 'mpirun', 'ncurses5-config', 'mpirun.openmpi', 'dh_bugfiles', 'flock', 'man', 'gcov', 'diff', 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'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 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'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.packages.lgrind 0.006933 ================================================================================ TEST consistencyChecks from config.packages.hip(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.hip(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.002464 Looking for default Gmsh executable Checking for program /usr/local/sbin/gmsh...not found Checking for program /usr/local/bin/gmsh...not found Checking for program /usr/sbin/gmsh...not found Checking for program /usr/bin/gmsh...not found Checking for program /sbin/gmsh...not found Checking for program /bin/gmsh...not found Checking for program /usr/games/gmsh...not found Checking for program /usr/local/games/gmsh...not found Checking for program /usr/bin/anaconda2/bin/gmsh...not found Checking for program /opt/slurm/14.11.3/bin/gmsh...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/gmsh...not found Unable to find programs ['gmsh'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 'g_anaeig', 'lwp-mirror', 'lesspipe', 'dpkg-query', 'enchant', 'g_select_d', 'lspgpot', 'telnet', 'py3clean', 'dh_fixperms', 'g_rotmat_d', 'autogen', 'ompi-server', 'pygettext3', 'pdb3.4', 'chattr', 'printenv', 'ngettext', 'preconv', 'ldd', 'dpkg-source', 'gedit', 'g_lie', 'rpm', 'unlzma', 'xxd', 'uxterm', 'obminimize', 'clang-check-3.5', 'printf', 'g_confrms_d', 'top', 'ssh-agent', 'lsb_release', 'dbus-launch', 'setarch', 'grub-mkrelpath', 'x86_64-linux-gnu-gfortran-4.8', 'dpkg-split', 'on_ac_power', 'genbox_d', 'iceauth', 'g_spol_d', 'xlsclients', 'dh_installxfonts', 'sfparse', 'x86_64-linux-gnu-cpp-4.8', 'dotlockfile', 'wpa_passphrase', 'pldd', 'mysql_fix_extensions', 'gdebi', 'g_sorient_d', 'x86_64-linux-gnu-python-config', 'dh_pypy', 'dpkg-gencontrol', 'xpm2ps_d', 'orted', 'llvm-as-3.4', 'llvm-mc-3.4', 'emacs', 'splain', 'g_nmeig_d', 'aptitude-run-state-bundle', 'trjcat', 'aptitude-create-state-bundle', 'ncursesw5-config', 'f2py2.7', 'icu-config', 'gslj', 'info', 'etags', 'byobu-tmux', 'intltoolize', '*', 'dh_suidregister', 'pycompile', 'xfd', 'msgunfmt', 'gtbl', 'ri1.9.1', 'gracebat', 'git-shell', 'loadkeys', 'x86_64-linux-gnu-objdump', 'gcc-ar', 'fdf2fit', 'reset', 'logger', 'dh_gconf', 'sg', 'gconf-merge-tree', 'eneconv_d', 'rpmdb', 'join', 'gcov-4.8', 'dh_installdocs', 'savelog', 'rake1.9.1', 'llvm-diff', 'byobu-janitor', 'genion_d', 'xzcmp', 'x86_64-linux-gnu-gprof', 'llvm-ar', 'grub-syslinux2cfg', 'xmessage', 'svnlook', 'dpkg-checkbuilddeps', 'xhost', 'gcov-tool', 'nvidia-debugdump', 'traceroute6', 'x86_64-linux-gnu-python3.4m-config', 'c89', 'mpiexec.openmpi', 'dh_listpackages', 'prename', 'g_angle_d', 'w', 'g_mdmat', 'dbilogstrip', 'inxi', 'xdg-icon-resource', 'edit', 'byobu-screen', 'do_dssp_d', 'diff3', 'ntpsweep', 'x86_64-linux-gnu-gcc-4.9', 'setxkbmap', 'intltool-merge', 'uptime', 'pygettext2.7', 'dh_dkms', 'test', 'x86_64-linux-gnu-python3.4-config', 'dh_bash-completion', 'g_analyze', 'tr', 'basename', 'opal_wrapper', 'llvm-dis-3.4', 'opalcc', 'mdrun_d', 'unlink', 'grub-mknetdir', 'g_covar_d', 'ubuntu-support-status', 'xlsfonts', 'gpgv', 'llvm-diff-3.4', 'taskset', 'colrm', 'orte-top', 'munge', 'faked-tcp', 'g_sorient', 'wc', 'aptitude', 'x86_64-linux-gnu-elfedit', 'gtester', 'msgcmp', 'pathchk', 'mysqlshow', 'llvm-objdump-3.4', 'grace', 'glib-genmarshal', 'vi', 'python2.7', 'llvm-dis-3.5', 'llvm-profdata-3.5', 'envsubst', 'xzegrep', 'g_hydorder_d', 'pod2html', 'slabtop', 'xset', 'pilconvert', 'getfacl', 'dvipdf', 'stat', 'x86_64-linux-gnu-gcc', 'pkcheck', 'printerbanner', 'install', 'w3m', 'c++', 'g_protonate', 'g_sigeps_d', 'byobu-ugraph', 'byobu-keybindings', 'g_dielectric_d', 'update-gconf-defaults', 'mpif90.openmpi', 'gcc-ranlib-4.8', 'x86_64-linux-gnu-cpp-5', 'nslookup', 'rdoc', 'obgrep', 'x86_64-linux-gnu-gcc-ar', 'cvtenc', 'pdb2.7', 'g_spatial_d', 'alien', 'resize', 'dh_desktop', 'macho-dump', 'g_gyrate', 'llvm-config-3.4', 'gnome-help', 'mysql_waitpid', 'twistd', 'easy_install-3.4', 'readelf', 'grub-mkimage', 'dh_scour', 'gsbj', 'gspath', 'dpkg', 'fakeroot', 'colormgr', 'gdialog', 'g_potential', 'troff', 'make_ndx', 'zxpdf', 'pkaction', 'g_polystat_d', 'easy_install3', 'dh_installinit', 'gettextize', 'run-this-one', 'updatedb.mlocate', 'passwd', 'grub-editenv', 'llvm-as-3.5', 'factor', 'dh_translations', 'vim.tiny', 'xsetpointer', 'dh_perl', 'xkbprint', 'g_sham_d', 'select-editor', 'llvm-nm-3.5', 'debconf-escape', 'llvm-rtdyld-3.4', 'prtstat', 'g_dyndom_d', 'gsettings-schema-convert', 'ntfsdecrypt', 'update-perl-sax-parsers', 'aubrsync', 'g_h2order_d', 'g_sas', 'x86_64-linux-gnu-gcov-4.9', 'g_hbond_d', 'ionice', 'dh_installdeb', 'chrt', 'x86_64-linux-gnu-objcopy', 'infotocap', 'pinky', 'ftp', 'ptar', 'getconf', 'pfbtopfa', 'see', 'rpmbuild', 'setpci', 'gtf', 'pilfont.py', 'x-terminal-emulator', 'nroff', 'obrotate', 'renice', 'logname', 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'mysql_install_db', 'lockfile-remove', 'du', 'ps2epsi', 'g_tcaf', 'timeout', 'c++filt', 'size', 'c2ph', 'pdb2gmx', 'yes', 'grub-mkrescue', 'xlsatoms', 'guild', 'g_dyndom', 'dh_installppp', 'sconsign', 'mtr', 'appres', 'x-session-manager', 'bjam', 'mysqlslap', 'enc2xs', 'llvm-stress-3.5', 'llvm-tblgen', 'dh_installlogrotate', 'g_dos', 'tclsh8.4', 'g_options_d', 'opt-3.4', 'zip', 'byobu-config', 'f2py', 'ssh', 'pyversions', 'grub-ntldr-img', 'nsenter', 'lzfgrep', 'g_gyrate_d', 'stdbuf', 'llvm-nm-3.4', 'byobu-select-profile', 'snmpkey', 'obxprop', 'emacs24', 'kbdinfo', 'xauth', 'do_dssp', 'w3mman', 'obprop', 'automake', 'perl5.22-x86_64-linux-gnu', 'setleds', 'setfacl', 'mpirun', 'ncurses5-config', 'mpirun.openmpi', 'dh_bugfiles', 'flock', 'man', 'gcov', 'diff', 'fc-query', 'vimdiff', 'ptardiff', 'gcc-nm-4.8', 'glxgears', 'nose2', 'apt-get', 'gcov-tool-5', 'tclsh8.6', 'nvidia-persistenced', 'dbus-update-activation-environment', 'genbrk', 'dpkg-name', 'dh_installinfo', 'dpkg-statoverride', 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'nvidia-xconfig', 'update-mime-database.real', 'docker', 'dpkg-scansources', 'cpp', 'mtrace', 'corelist', 'dh_installmime', 'x86_64-linux-gnu-readelf', 'g_densorder_d', 'byobu-export', 'grompp', 'dh_perl_dbi', 'ssh-add', 'tput', 'mysql_convert_table_format', 'grace-thumbnailer', 'psfstriptable', 'automake-1.14', 'gdbtui', 'telnet.netkit', 'g_rama_d', 'python3', 'pilconvert.py', 'dh_installemacsen', 'bugpoint-3.5', 'g_velacc', 'dpkg-architecture', 'xdriinfo', 'dh_usrlocal', 'g_sans_d', 'llvm-mc', 'plser', 'mysqlbug', 'genconf', 'git-upload-archive', 'g_principal_d', 'g_wheel_d', 'touch', 'pgrep', 'traceroute6.iputils', 'gpgsplit', 'clear', 'bdftruncate', 'unmunge', 'showconsolefont', 'rsh', 'quickbook', 'lwp-download', 'c99-gcc', 'dh_numpy3', 'pydoc3.4', 'oldfind', 'lscpu', 'dh_auto_clean', 'fmt', 'HEAD', 'python2', 'dbus-monitor', 'mpiCC.openmpi', 'rpmsign', 'pcre-config', 'dh_installexamples', 'genbox', 'lshw', 'mpic++', 'vim.gtk', 'git-upload-pack', 'sudoreplay', 'pxz', 'tcltk-depends', 'g_clustsize', 'llvm-readobj-3.4', 'g_traj', 'byobu-enable', 'c99', 'acpi_listen', 'gpg', 'base64', 'aclocal', 'lorder', 'dumpkeys', 'dpkg-gensymbols', 'gem1.9.1', 'neqn', 'gnome-text-editor', 'dbus-run-session', 'xpdf.real', 'glib-gettextize', 'mail', 'lockfile-check', 'dh_clean', 'tail', 'svndumpfilter', 'pl2link', 'setterm', 'x86_64-linux-gnu-nm', 'plmerge', 'slogin', 'llvm-symbolizer-3.5', 'obgen', 'xargs', 'x86_64-linux-gnu-gcc-ranlib-5', 'chage', 'grub-mkstandalone', 'libpng12-config', 'scan-build-3.5', 'g_velacc_d', 'byobu-select-session', 'convcal', 'dpkg-maintscript-helper', 'dh_auto_test', 'dh_prep', 'svnrdump', 'x86_64-linux-gnu-gcc-ar-4.8', 'fc-match', 'byobu-prompt', 'ps2pdf', 'python2-config', 'ctags', 'llvm-nm', 'pandoc', 'dpkg-buildflags', 'tclsh', 'xzdiff', 'zipgrep', 'at', 'bugpoint-3.4', 'ps2ps', 'apt-cdrom', 'evim', 'ortec++', 'bc', 'md5sum.textutils', 'g_saltbr_d', 'ocsinventory-agent', 'my_print_defaults', 'mpiCC', 'macho-dump-3.4', 'xkbwatch', 'paperconf', 'splitfont', 'g_density_d', 'g_energy', 'clang-apply-replacements-3.5', 'gmxdump', 'editor', 'orte-ps', 'mysql', 'editconf', 'locate', 'uniq', 'i386', 'atq', 'x86_64-linux-gnu-as', 'ucs2any', 'cgroups-mount', 'nl', 'psfgettable', 'g_dipoles', 'libpng-config', 'sensors', 'fakeroot-tcp', 'sort', 'zdump', 'gencfu', 'tset', 'fc-pattern', 'ps2ps2', 'x86_64', 'autoscan', 'sensible-editor', 'grub-script-check', 'f2py3.4', 'tasksel', 'lli-3.5', 'g_bond_d', 'derb', 'rpmkeys', 'gcc-ar-5', 'scp', 'byobu-enable-prompt', 'time', 'msgattrib', 'strings', 'asan_symbolize-3.5', 'g_nmens', 'pilfont', 'tpbconv', 'x86_64-linux-gnu-c++filt', 'g_density', 'g_sgangle_d', 'python3.4m-config', 'xz', 'ri', 'groff', 'gpg-zip', 'awk', 'nvidia-bug-report.sh', 'g_spol', 'ddd', 'ompi-top', 'grotty', 'x86_64-linux-gnu-ranlib', 'nstat', 'gen-preseed', 'xkill', 'bsd-write', 'gcore', 'linux-check-removal', 'atrm', 'lessfile', 'dh_auto_build', 'pdf2dsc', 'mysql_plugin', 'cpp-4.9', 'getopt', 'lsattr', 'glib-compile-schemas', 'debugapp', 'libtool', 'xwininfo', 'nano', 'lli-child-target-3.5', 'newaliases', 'x86_64-linux-gnu-gcc-ar-5', 'ptx', 'genconf_d', 'g_potential_d', 'llvm-dis', 'perlbug', 'watch', 'cpp-4.8', 'autogsdoc', 'gcc-ar-4.9', 'vim', 'piconv', 'obrotamer', 'localectl', 'g_angle', 'docker-init', 'byobu-launcher-install', 'munindoc', 'plget', 'ps2ascii', 'obspectrophore', 'obabel', 'mandb', 'as', 'mdrun', 'gtester-report', 'dh_installlogcheck', 'dh_installgsettings', 'volname', 'msgexec', 'byobu-status', 'cal', 'g_sans', 'ompi-ps', 'g_mindist_d', 'g_spatial', 'g_chi', 'ischroot', 'g_chi_d', 'split', 'lsusb', 'rstudio', 'x86_64-linux-gnu-g++-4.8', 'g_sas_d', 'mpic++.openmpi', 'm17n-db', 'xterm', 'json_pp', 'dh_scrollkeeper', 'gvimtutor', 'perldoc', 'ntpq', 'poff', 'ex', 'llvm-stress-3.4', 'gs', 'pon', 'gcc-nm-4.9', 'dh_installifupdown', 'dh_ucf', 'report-hw', 'docker-containerd', 'xkbcomp', 'ubuntu-bug', 'getkeycodes', 'obconf', 'docker-proxy', 'g_dielectric', 'g_current', 'g_select', 'gprof', 'dgawk', 'babel', 'loadunimap', 'erb', 'dockerd', 'pkttyagent', 'demux', 'perlivp', 'dh_strip', 'cmp', 'g_luck', 'g_bar_d', 'make_strings', 'myisampack', 'ar', 'x86_64-linux-gnu-g++', 'lsipc', 'rpm2cpio', 'c89-gcc', 'apt-config', 'ngmx_d', 'patch', 'xpm2ps', 'rename', 'peekfd', 'xsetroot', 'fc-list', 'mysql_config', 'aspell-import', 'zeitgeist-datahub', 'ssh-import-id-gh', 'llvm-config', 'genrestr', 'ssh-import-id-lp', 'mysql_zap', 'ssh-keyscan', 'gettext.sh', 'openbox', 'g_h2order', 'eview', 'deb-systemd-invoke', 'grub-glue-efi', 'htop', 'unexpand', 'macho-dump-3.5', 'expr', 'gcc-4.9', 'g_densorder', 'cpan5.22-x86_64-linux-gnu', 'g_densmap_d', 'from', 'llvm-diff-3.5', 'xstdcmap', 'autoreconf', 'x86_64-linux-gnu-cpp-4.9', 'plog', 'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.packages.gmsh 0.006559 ================================================================================ TEST consistencyChecks from config.packages.gmp(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.002850 ================================================================================ TEST consistencyChecks from config.packages.mpfr(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.002656 ================================================================================ TEST consistencyChecks from config.packages.giflib(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.002723 ================================================================================ TEST consistencyChecks from config.packages.cub(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.cub(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.002655 ================================================================================ TEST consistencyChecks from config.packages.ctetgen(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.002647 ================================================================================ TEST consistencyChecks from config.packages.concurrencykit(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.002687 ================================================================================ TEST locateC2html from config.packages.c2html(/home/fbrarda/petsc/config/BuildSystem/config/packages/c2html.py:30) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/games/c2html...not found Checking for program /usr/local/games/c2html...not found Checking for program /usr/bin/anaconda2/bin/c2html...not found Checking for program /opt/slurm/14.11.3/bin/c2html...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/c2html...not found Unable to find programs ['c2html'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 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'xterm', 'json_pp', 'dh_scrollkeeper', 'gvimtutor', 'perldoc', 'ntpq', 'poff', 'ex', 'llvm-stress-3.4', 'gs', 'pon', 'gcc-nm-4.9', 'dh_installifupdown', 'dh_ucf', 'report-hw', 'docker-containerd', 'xkbcomp', 'ubuntu-bug', 'getkeycodes', 'obconf', 'docker-proxy', 'g_dielectric', 'g_current', 'g_select', 'gprof', 'dgawk', 'babel', 'loadunimap', 'erb', 'dockerd', 'pkttyagent', 'demux', 'perlivp', 'dh_strip', 'cmp', 'g_luck', 'g_bar_d', 'make_strings', 'myisampack', 'ar', 'x86_64-linux-gnu-g++', 'lsipc', 'rpm2cpio', 'c89-gcc', 'apt-config', 'ngmx_d', 'patch', 'xpm2ps', 'rename', 'peekfd', 'xsetroot', 'fc-list', 'mysql_config', 'aspell-import', 'zeitgeist-datahub', 'ssh-import-id-gh', 'llvm-config', 'genrestr', 'ssh-import-id-lp', 'mysql_zap', 'ssh-keyscan', 'gettext.sh', 'openbox', 'g_h2order', 'eview', 'deb-systemd-invoke', 'grub-glue-efi', 'htop', 'unexpand', 'macho-dump-3.5', 'expr', 'gcc-4.9', 'g_densorder', 'cpan5.22-x86_64-linux-gnu', 'g_densmap_d', 'from', 'llvm-diff-3.5', 'xstdcmap', 'autoreconf', 'x86_64-linux-gnu-cpp-4.9', 'plog', 'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.packages.c2html 0.007615 ================================================================================ TEST consistencyChecks from config.packages.boost(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.002802 ================================================================================ TEST consistencyChecks from config.packages.silo(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.silo(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.002753 ================================================================================ TEST consistencyChecks from config.packages.Random123(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.Random123(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.002648 ================================================================================ TEST consistencyChecks from config.packages.PARTY(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.002666 ================================================================================ TEST consistencyChecks from config.packages.Matlab(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.002115 ================================================================================ TEST consistencyChecks from config.packages.MatlabEngine(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.002283 ================================================================================ TEST consistencyChecks from config.packages.Mathematica(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.002340 ================================================================================ TEST consistencyChecks from config.packages.regex(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.regex(/home/fbrarda/petsc/config/BuildSystem/config/package.py:870) TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:870) ================================================================================ TEST configureLibrary from config.packages.regex(/home/fbrarda/petsc/config/BuildSystem/config/package.py:895) TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Found header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Checking for headers ['regex.h'] in Compiler specific search REGEX: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in ['/home/fbrarda/petsc/arch-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/fbrarda/petsc/arch-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['regex.h'] in ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkVersion from config.packages.regex(/home/fbrarda/petsc/config/BuildSystem/config/package.py:1024) TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1024) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.regex(/home/fbrarda/petsc/config/BuildSystem/config/package.py:953) TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.regex 0.240180 Defined "PYTHON_EXE" to ""/usr/bin/python3"" Running Executable WITHOUT threads to time it out Executing: /usr/bin/python3 -c "import Cython" Running Executable WITHOUT threads to time it out Executing: /usr/bin/python3 -c "import numpy" child config.packages.python 0.609423 ================================================================================ TEST consistencyChecks from config.packages.petsc4py(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/home/fbrarda/petsc/config/BuildSystem/config/packages/petsc4py.py:111) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:111) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.004402 ================================================================================ TEST consistencyChecks from config.packages.mpi4py(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/home/fbrarda/petsc/config/BuildSystem/config/packages/mpi4py.py:74) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.003545 ================================================================================ TEST consistencyChecks from config.packages.slepc(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.slepc(/home/fbrarda/petsc/config/BuildSystem/config/packages/slepc.py:100) TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:100) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.003211 ================================================================================ TEST consistencyChecks from config.packages.opengl(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.002426 ================================================================================ TEST consistencyChecks from config.packages.glut(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.002382 ================================================================================ TEST consistencyChecks from config.packages.CoDiPack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.CoDiPack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.002604 ================================================================================ TEST consistencyChecks from config.packages.adblaslapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.adblaslapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.002683 child config.packages.cxxlibs 0.000041 ================================================================================ TEST locateCMake from config.packages.cmake(/home/fbrarda/petsc/config/BuildSystem/config/packages/cmake.py:48) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:48) Looking for default CMake executable Checking for program /usr/local/sbin/cmake...not found Checking for program /usr/local/bin/cmake...not found Checking for program /usr/sbin/cmake...not found Checking for program /usr/bin/cmake...not found Checking for program /sbin/cmake...not found Checking for program /bin/cmake...not found Checking for program /usr/games/cmake...not found Checking for program /usr/local/games/cmake...not found Checking for program /usr/bin/anaconda2/bin/cmake...not found Checking for program /opt/slurm/14.11.3/bin/cmake...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/cmake...not found Unable to find programs ['cmake'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 'g_xrama_d', 'g_rama', 'g_anadock_d', 'xkbevd', 'lslogins', 'debconf-gettextize', 'libtoolize', 'tsort', 'netkit-ftp', 'auchk', 'unshare', 'grep-changelog.emacs24', 'run-one', 'ipcmk', 'g_dyecoupl_d', 'editconf_d', '2to3-3.4', 'faked-sysv', 'dh_installmenu', 'apt-ftparchive', 'manhole', 'look', 'tic', 'mysqlaccess', 'hostnamectl', 'tee', 'precat', 'mysqlimport', 'pmap', 'emacs24-lucid', 'pod2latex', 'tload', 'rlogin', 'llvm-extract-3.4', 'dh_apparmor', 'gsettings-data-convert', 'python3-config', 'ps2pdf14', 'cgroups-umount', 'defaults', 'ipcs', 'rpmspec', 'infobrowser', 'gmxdump_d', 'deb-systemd-helper', 'genrestr_d', 'mlocate', 'pp-trace-3.5', 'freetype-config', 'dpkg-genchanges', 'pybuild', 'mpicxx', 'dh_install', 'apt-add-repository', 'setlogcons', 'gslp', 'pg', 'gcc-5', 'pstruct', 'hd', 'helpztags', 'x86_64-linux-gnu-python3m-config', 'geqn', 'showkey', '7za', 'pic', 'dh_icons', 'gencnval', 'byobu-shell', 'env', 'xgamma', 'sha384sum', 'svnmucc', 'ctags.emacs24', 'mesg', 'zipsplit', 'resizepart', 'fallocate', 'xdg-desktop-icon', 'ipcrm', 'dh_installudev', 'llvm-rtdyld-3.5', 'opt', 'sha512sum', 'dh_installxmlcatalogs', 'gettext', 'msgcomm', 'svnauthz-validate', 'llvm-tblgen-3.4', 'zeitgeist-daemon', 'svnraisetreeconflict', 'llc-3.5', 'hostid', 'cd-iccdump', 'g_mdmat_d', 'landscape-sysinfo', 'pldes', 'xprop', 'g_xrama', 'objcopy', 'llvm-ranlib-3.4', 'cdbs-edit-patch', 'g_options', 'xzmore', 'grconvert', 'intltool-prepare', 'svn-bench', 'ssh-import-id', 'grub-mklayout', 'g_confrms', 'catchsegv', 'make_edi', 'prezip-bin', 'g_morph', 'g++-5', 'plparse', 'eneconv', 'g_rms', 'X11', 'ebrowse.emacs24', 'mysql_client_test', 'clang-tidy-3.5', 'mysqltest', 'snice', 'addpart', 'fakeroot-sysv', 'eps2eps', 'sensors-conf-convert', 'x86_64-linux-gnu-ld.bfd', 'vim.basic', 'psfxtable', 'xfontsel', 'mysqlanalyze', 'g_msd_d', 'xkbbell', 'innochecksum', 'columns', 'chardet', 'aclocal-1.14', 'byobu-disable-prompt', 'whereis', 'ps2pdf13', 'soelim', 'gendiff', 'mpif77', 'sha256sum', 'column', 'pstree.x11', 'llvm-objdump-3.5', 'usb-devices', 'svnversion', 'gfortran-4.8', 'ld.gold', 'perlthanks', 'ncal', 'getent', 'id', 'dpkg-shlibdeps', 'linux32', 'init-checkconf', 'python3m', 'sha1sum', 'g_morph_d', 'dpkg-deb', 'openssl', 'glib-mkenums', 'llvm-bcanalyzer-3.4', 'llvm-dwarfdump', 'autoheader', 'xzfgrep', 'plio', 'mpicxx.openmpi', 'apt-cache', 'gdbus-codegen', 'x86_64-linux-gnu-gfortran', 'ucfq', 'ghostscript', 'gdm-control', 'rsync', 'g_hbond', 'chsh', 'sudo', 'sntp', 'pdb3', 'mimeopen', 'screen', 'llvm-extract-3.5', 'g_filter_d', 'pr', 'cd-create-profile', 'g_mindist', 'gresource', 'printafm', 'opt-3.5', 'mkfontdir', 'tap2rpm', 'g_x2top_d', 'byobu-silent', 'byobu-layout', 'timedatectl', 'xrefresh', 'lli-3.4', 'tty', 'gcc-ranlib', 'debconf-apt-progress', 'g_order_d', 'arch', 'g_clustsize_d', 'namei', 'zsh', 'dbus-send', 'unattended-upgrades', 'linux-version', 'llvm-link-3.5', 'ucf', 'x86_64-linux-gnu-gcc-ranlib-4.8', 'omshell', 'pildriver.py', 'gem', 'llvm-dwarfdump-3.4', 'objdump', 'dwp', 'tzselect', 'lzegrep', 'git-receive-pack', 'dh_movefiles', 'icuinfo', 'x86_64-linux-gnu-gcc-4.8', 'grub-fstest', 'lzless', 'tbl', 'nvidia-cuda-mps-control', 'ptargrep', 'dh_installpam', 'g_enemat_d', 'dbiprof', 'git', 'g_traj_d', 'nproc', 'www-browser', 'py3compile', 'gsdj', 'llvm-cov', 'autoopts-config', 'gconftool', 'f95', 'g_densmap', 'seq', 'grub-mkfont', 'debconf-show', 'prove', 'docker-containerd-ctr', 'cd-fix-profile', 'lcf', 'batch', 'g_membed', 'gcc-4.8', 'svnadmin', 'lzcat', 'g_hydorder', 'pip3', 'obchiral', 'shuf', 'dh_md5sums', 'podebconf-display-po', 'easy_install', 'autoupdate', 'orte-bootproxy', 'g_covar', 'glxinfo', 'gdb', 'lexgrog', 'msgconv', 'ginstall-info', 'mapscrn', 'gtk-update-icon-cache-3.0', 'mysqlreport', 'dh_numpy', 'xdg-open', 'chacl', 'who', 'mpif77.openmpi', 'llvm-size-3.4', 'groups', 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'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Looking for default CTest executable Checking for program /usr/local/sbin/ctest...not found Checking for program /usr/local/bin/ctest...not found Checking for program /usr/sbin/ctest...not found Checking for program /usr/bin/ctest...not found Checking for program /sbin/ctest...not found Checking for program /bin/ctest...not found Checking for program /usr/games/ctest...not found Checking for program /usr/local/games/ctest...not found Checking for program /usr/bin/anaconda2/bin/ctest...not found Checking for program /opt/slurm/14.11.3/bin/ctest...not found Checking for program /home/fbrarda/petsc/lib/petsc/bin/win32fe/ctest...not found Unable to find programs ['ctest'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['behave', 'matlab', 'simulate', 'wheel', '*', 'raspa-dir', 'cmake', 'pip', 'pip2.7', 'pip2', 'vmd'] ['tcpd', 'rpcinfo', 'update-fonts-dir', 'rsyslogd', 'update-binfmts', 'pppdump', 'posttls-finger', 'adduser', 'dpkg-preconfigure', 'ispell-autobuildhash', 'addgroup', 'rpc.svcgssd', 'pppstats', 'munin-node', 'grpck', 'qmqp-source', 'update-catalog', 'postfix-add-policy', 'deluser', 'sshd', 'dpkg-reconfigure', 'update-ca-certificates', 'create-munge-key', 'tarcat', 'groupadd', 'validlocale', 'update-grub2', 'nfsidmap', 'pppconfig', 'vpddecode', 'chroot', 'visudo', 'logrotate', 'postfix', 'grub-reboot', 'update-gsfontmap', 'grpconv', 'gensprep', 'postcat', 'megatrace', 'munin-node-configure', 'popularity-contest', 'service', 'cppw', 'rpcdebug', 'update-locale', 'update-grace-fonts', 'cpgr', 'mklost+found', 'safe_finger', 'update-passwd', 'chpasswd', 'paperconfig', 'update-info-dir', 'setvesablank', 'zic', 'postlog', 'make-ssl-cert', 'groupdel', 'update-dictcommon-hunspell', 'ntp-wait', 'megaraid-status', 'upgrade-from-grub-legacy', 'uuidd', 'sensors-detect', 'arp', 'update-default-wordlist', 'qshape', 'genccode', 'sendmail', 'postsuper', 'groupmod', 'update-fonts-scale', 'pwunconv', 'grub-macbless', 'ntpdate-debian', 'laptop-detect', 'rpc.gssd', 'rmt', 'e2freefrag', 'select-default-ispell', 'useradd', 'munged', 'pppoeconf', 'postqueue', 'tcpdump', 'pam-auth-update', 'newusers', 'munin-sched', 'update-initramfs', 'update-usbids', 'qmqp-sink', 'icupkg', 'aspell-autobuildhash', 'pppoe-discovery', 'tcpdchk', 'mountstats', 'postlock', 'grub-mkdevicemap', 'postmap', 'pam_getenv', 'cron', 'pam_timestamp_check', 'accessdb', 'update-dictcommon-aspell', 'try-from', 'atd', 'munin-run', 'chat', 'ntpd', 'grpunconv', 'dpkg-divert', 'update-pciids', 'gennorm2', 'isadump', 'hddtemp', 'iptables-apply', 'readprofile', 'update-fonts-alias', 'add-shell', 'gss_clnt_send_err', 'megactl', 'nfnl_osf', 'smtp-sink', 'blkmapd', 'update-default-aspell', 'select-default-wordlist', 'smtp-source', 'nologin', 'rtcwake', 'iconvconfig', 'ldattach', 'dmidecode', 'isaset', 'tcpdmatch', 'tunelp', 'postconf', 'megasasctl', 'megaraidsas-status', 'update-mime', 'usermod', 'ntpdate', 'dpkg-statoverride', 'postfix-add-filter', 'pppd', 'update-apt-xapian-index', 'ntp-keygen', 'mysqld', 'postalias', 'postmulti', 'update-xmlcatalog', 'remove-shell', 'tzconfig', 'gconf-schemas', 'grub-mkconfig', 'postdrop', 'irqbalance', 'invoke-rc.d', 'acpid', 'gss_destroy_creds', 'vcstime', 'arpd', 'start-statd', 'grub-install', 'nfsiostat', 'update-icon-caches', 'update-rc.d', 'rmt-tar', 'userdel', 'update-icon-caches.gtk2', 'remove-default-wordlist', 'update-python-modules', 'remove-default-ispell', 'delgroup', 'grub-bios-setup', 'biosdecode', 'ntptime', 'popcon-largest-unused', 'grub-probe', 'postkick', 'locale-gen', 'filefrag', 'vipw', 'vigr', 'e4defrag', 'rmail', 'dkms', 'update-grub-gfxpayload', 'update-grub', 'ip6tables-apply', 'update-alternatives', 'fdformat', 'pwck', 'ufw', 'rpc.idmapd', 'grub-set-default', 'install-sgmlcatalog', 'ownership', 'pwconv', 'gencmn', 'update-default-ispell', 'mkinitramfs', 'nfsstat', 'chgpasswd'] ['scons', 'xrdb', 'byobu-ctrl-a', 'llvm-tblgen-3.5', '2to3-2.7', 'ompi-probe', 'cpan', 'c-index-test-3.5', 'sha224sum', 'paste', 'dircolors', 'gpasswd', 'intltool-update', 'infokey', 'gtk-update-icon-cache', 'bsd-from', 'pyclean', 'dh_undocumented', 'nsupdate', 'resizecons', 'dh_builddeb', 'g_nmens_d', 'opalc++', 'pilprint', 'gtk-launch', 'svn', 'fc-cache', 'write', 'gendict', 'grompp_d', 'gawk', 'g_dos_d', 'svnauthz', 'xsetmode', 'x86_64-linux-gnu-gcov-tool-5', 'routel', 'whoami', 'rpcgen', 'dh', 'pf2afm', 'perror', 'sprof', 'g_rdf_d', 'faillog', 'g_dipoles_d', 'g_disre_d', 'rdoc1.9.1', 'g_wham', 'msgen', 'llc-3.4', 'wget', 'g++-4.9', 'glxheads', 'daemon', 'g_kinetics', 'lzmainfo', 'x86_64-linux-gnu-g++-5', 'ompi-clean', 'sdiff', 'start-nvidia-persistenced', 'do-release-upgrade', 'ps2txt', 'gdnc', 'g_wheel', 'g_kinetics_d', 'delpart', 'ompi-iof', 'apport-unpack', 'llvm-ranlib-3.5', 'codepage', 'run-mailcap', 'pgawk', 'file-rename', 'docker-containerd-shim', 'pildriver', 'debconf', 'gmxcheck_d', 'gencat', 'apport-bug', 'docker-runc', 'podebconf-report-po', 'pstree', 'rgvim', 'uuidgen', 'x86_64-linux-gnu-gcc-ranlib-4.9', 'prezip', 'makeconv', 'x-window-manager', 'tmux', 'ps2pdfwr', 'mysql_secure_installation', 'ngmx', 'lockfile-touch', 'g_rdf', 'skill', 'make', 'mysql_tzinfo_to_sql', 'msggrep', 'unxz', 'lli', 'ifnames', 'ltrace', 'g_saltbr', 'eqn', 'Rscript', 'nawk', 'llvm-config-3.5', 'cut', 'install-info', 'mysqld_multi', 'colcrt', 'llvm-bcanalyzer', 'aspell', 'ssh-keygen', 'g_principal', 'dpkg-trigger', 'ld.bfd', 'clear_console', 'llvm-objdump', 'dh_python2', 'perl5.22.1', 'host', 'pphs', 'genion', 'xdpyinfo', 'tcsh', 'gsettings', 'genrb', 'zipinfo', 'lslocks', 'update-mime-database', 'line', 'routef', 'pod2usage', 'orte-iof', 'mysqld_safe', 'pygettext3.4', 'clang-3.5', 'mkfontscale', 'g_energy_d', 'dh_installmodules', 'svn-populate-node-origins-index', 'gsdj500', 'numfmt', 'x86_64-linux-gnu-python3-config', 'locale', 'g_cluster', 'g_lie_d', 'runcon', 'pdf2ps', 'ssh-argv0', 'etags.emacs24', 'mysqlbinlog', 'g_bar', 'dh_shlibdeps', 'ompi_info', 'x86_64-linux-gnu-ar', 'lsinitramfs', 'free', 'lwp-request', 'wish', 'python', 'lzcmp', 'obfit', 'cc', 'xplor2gmx', 'llvm-rtdyld', 'lzma', 'fc-scan', 'xgettext', 'rtstat', 'myisamchk', 'x86_64-linux-gnu-size', 'dpkg-buildpackage', 'find', 'run-with-aspell', 'tpbconv_d', 'grep-changelog', 'mk_modmap', 'g_msd', 'rpmquery', 'ranlib', 'editres', 'g_vanhove', 'mysqloptimize', 'bugpoint', 'innotop', 'mawk', 'cpp-5', 'psfaddtable', '7z', 'scons-time', 'apport-collect', 'pcimodules', 'crontab', 'dbus-uuidgen', 'ul', 'dbus-cleanup-sockets', 'prlimit', 'killall', 'g_luck_d', 'view', 'mk_angndx', 'mysqlhotcopy', 'g_sham', 'less', 'gio-querymodules', 'dirname', 'mailq', 'byobu-launcher-uninstall', 'toe', 'easy_install-2.7', 'dh_installchangelogs', 'ortecc', 'g_membed_d', 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'zdump', 'gencfu', 'tset', 'fc-pattern', 'ps2ps2', 'x86_64', 'autoscan', 'sensible-editor', 'grub-script-check', 'f2py3.4', 'tasksel', 'lli-3.5', 'g_bond_d', 'derb', 'rpmkeys', 'gcc-ar-5', 'scp', 'byobu-enable-prompt', 'time', 'msgattrib', 'strings', 'asan_symbolize-3.5', 'g_nmens', 'pilfont', 'tpbconv', 'x86_64-linux-gnu-c++filt', 'g_density', 'g_sgangle_d', 'python3.4m-config', 'xz', 'ri', 'groff', 'gpg-zip', 'awk', 'nvidia-bug-report.sh', 'g_spol', 'ddd', 'ompi-top', 'grotty', 'x86_64-linux-gnu-ranlib', 'nstat', 'gen-preseed', 'xkill', 'bsd-write', 'gcore', 'linux-check-removal', 'atrm', 'lessfile', 'dh_auto_build', 'pdf2dsc', 'mysql_plugin', 'cpp-4.9', 'getopt', 'lsattr', 'glib-compile-schemas', 'debugapp', 'libtool', 'xwininfo', 'nano', 'lli-child-target-3.5', 'newaliases', 'x86_64-linux-gnu-gcc-ar-5', 'ptx', 'genconf_d', 'g_potential_d', 'llvm-dis', 'perlbug', 'watch', 'cpp-4.8', 'autogsdoc', 'gcc-ar-4.9', 'vim', 'piconv', 'obrotamer', 'localectl', 'g_angle', 'docker-init', 'byobu-launcher-install', 'munindoc', 'plget', 'ps2ascii', 'obspectrophore', 'obabel', 'mandb', 'as', 'mdrun', 'gtester-report', 'dh_installlogcheck', 'dh_installgsettings', 'volname', 'msgexec', 'byobu-status', 'cal', 'g_sans', 'ompi-ps', 'g_mindist_d', 'g_spatial', 'g_chi', 'ischroot', 'g_chi_d', 'split', 'lsusb', 'rstudio', 'x86_64-linux-gnu-g++-4.8', 'g_sas_d', 'mpic++.openmpi', 'm17n-db', 'xterm', 'json_pp', 'dh_scrollkeeper', 'gvimtutor', 'perldoc', 'ntpq', 'poff', 'ex', 'llvm-stress-3.4', 'gs', 'pon', 'gcc-nm-4.9', 'dh_installifupdown', 'dh_ucf', 'report-hw', 'docker-containerd', 'xkbcomp', 'ubuntu-bug', 'getkeycodes', 'obconf', 'docker-proxy', 'g_dielectric', 'g_current', 'g_select', 'gprof', 'dgawk', 'babel', 'loadunimap', 'erb', 'dockerd', 'pkttyagent', 'demux', 'perlivp', 'dh_strip', 'cmp', 'g_luck', 'g_bar_d', 'make_strings', 'myisampack', 'ar', 'x86_64-linux-gnu-g++', 'lsipc', 'rpm2cpio', 'c89-gcc', 'apt-config', 'ngmx_d', 'patch', 'xpm2ps', 'rename', 'peekfd', 'xsetroot', 'fc-list', 'mysql_config', 'aspell-import', 'zeitgeist-datahub', 'ssh-import-id-gh', 'llvm-config', 'genrestr', 'ssh-import-id-lp', 'mysql_zap', 'ssh-keyscan', 'gettext.sh', 'openbox', 'g_h2order', 'eview', 'deb-systemd-invoke', 'grub-glue-efi', 'htop', 'unexpand', 'macho-dump-3.5', 'expr', 'gcc-4.9', 'g_densorder', 'cpan5.22-x86_64-linux-gnu', 'g_densmap_d', 'from', 'llvm-diff-3.5', 'xstdcmap', 'autoreconf', 'x86_64-linux-gnu-cpp-4.9', 'plog', 'myisamlog', 'debugedit', 'g++-4.8', 'byobu-reconnect-sockets', 'viewres', 'lockfile-create', 'grub-mkpasswd-pbkdf2', 'libnetcfg', 'funzip', 'gcc-nm-5', 'mkfifo', 'catman', 'msguniq', 'g_bundle_d', 'setmetamode', 'erb1.9.1', 'gold', 'mysql_upgrade', 'gfortran', 'ruby1.9.1', 'orte_wrapper_script', 'initctl2dot', 'instmodsh', 'pftp', 'mysql_find_rows', 'g_protonate_d', 'pilfile.py', 'rmail', 'shasum', 'g_helixorient', 'gcc-ar-4.8', 'dh_installdirs', 'Mail', 'dh_installcatalogs', 'xev', 'ntpdc', 'llvm-extract', 'compose', 'llvm-as', 'xzless', 'xmodmap', 'msql2mysql', 'dh_auto_configure', 'zenity', 'glib-compile-resources', 'trjcat_d', 'mk_angndx_d', 'llvm-ar-3.5', 'emacsclient', 'update-alternatives', 'trial', 'bashbug', 'mysql_setpermission', 'h2ph', 'w.procps', 'x86_64-linux-gnu-gcov-4.8', 'pilfile', 'gdomap', 'g_polystat', 'nose2-2.7', 'pdb2gmx_d', 'resolve_stack_dump', 'g_tcaf_d', 'x86_64-linux-gnu-ld.gold', 'tac', 'grub-menulst2cfg', 'testrb1.9.1', 'x86_64-linux-gnu-gcc-5', 'rview', 'dh_makeshlibs', 'pwdx', 'llvm-mc-3.5', 'sensible-pager', 'openapp', 'g_nmtraj_d', 'run-one-until-success', 'lnstat', 'link', 'rake', 'x86_64-linux-gnu-gcov-5', 'setsid', '[', 'llvm-ranlib', 'g_nmeig', 'g_rmsdist_d', 'unattended-upgrade', 'dh_link', 'g_helix', 'ccze', 'byobu-select-backend', 'g_anaeig_d', 'msgfmt', 'check-language-support', 'g_rotacf', 'pdb', 'gconftool-2', 'GET', 'nvidia-cuda-mps-server', 'apt-extracttemplates', 'resolveip', 'replace', 'llvm-size-3.5', 'elfedit', 'llvm-mcmarkup-3.4', 'mail-lock', 'debconf-communicate', 'g_current_d', 'eject', 'trjorder_d', 'igawk', 'g_sigeps', 'ompi-profiler', 'g_anadock', 'parsechangelog', 'fc-cat', 'llvm-prof', 'x86_64-linux-gnu-g++-4.9'] ['capsh', 'mkfs.msdos', 'route', 'mke2fs', 'zramctl', 'crda', 'tc', 'mkfs', 'lvchange', 'fsck.msdos', 'umount.nfs4', 'insmod', 'hwclock', 'vgconvert', 'biosdevname', 'lvresize', 'vgextend', 'auibusy', 'getcap', 'dhclient-script', 'restart', 'losetup', 'upstart-local-bridge', 'mkfs.ext4dev', 'iwspy', 'vgimport', 'setvtrgb', 'unix_chkpwd', 'upstart-dbus-bridge', 'pivot_root', 'ntfsclone', 'fsfreeze', 'e2image', 'fsck.vfat', 'regdbdump', 'badblocks', 'chcpu', 'sfdisk', 'mkfs.cramfs', 'sm-notify', 'wipefs', 'ctrlaltdel', 'fstab-decode', 'swaplabel', 'lvconvert', 'ntfsresize', 'vgmerge', 'fsck', 'resize2fs', 'iptunnel', 'tune2fs', 'pvchange', 'mkfs.ntfs', 'dosfslabel', 'ifup', 'mount.ntfs-3g', 'runuser', 'mkswap', 'lvscan', 'vgexport', 'fatlabel', 'fsck.fat', 'rtacct', 'vgs', 'reload', 'iwpriv', 'mkdosfs', 'swapon', 'ureadahead', 'vgcreate', 'mkfs.ext4', 'fsck.ext4', 'pvscan', 'fsck.cramfs', 'fstrim', 'ip6tables-restore', 'debugfs', 'upstart-event-bridge', 'unix_update', 'initctl', 'umount.nfs', 'getty', 'on_ac_power', 'ntfsundelete', 'apm_available', 'pvremove', 'rpcbind', 'key.dns_resolver', 'blkdiscard', 'killall5', 'ntfslabel', 'ip', 'pvcreate', 'ifdown', 'ifquery', 'slattach', 'sysctl', 'xtables-multi', 'ifconfig', 'depmod', 'rmmod', 'parted', 'iptables', 'bridge', 'mount.nfs4', 'vgdisplay', 'fsck.nfs', 'e2label', 'mkfs.fat', 'ethtool', 'start', 'isosize', 'auplink', 'pvs', 'ip6tables', 'upstart', 'vgchange', 'mountall', 'osd_login', 'fsck.minix', 'lvmchange', 'start-stop-daemon', 'swapoff', 'installkernel', 'dosfsck', 'partprobe', 'ip6tables-save', 'MAKEDEV', 'rtmon', 'setcap', 'pvresize', 'modprobe', 'lvs', 'resolvconf', 'mkfs.vfat', 'wpa_action', 'vgcfgbackup', 'nameif', 'fsck.ext4dev', 'lvmdiskscan', 'lvextend', 'agetty', 'vgck', 'dmeventd', 'e2undo', 'iptables-apply', 'umount.aufs', 'lvmdump', 'vgcfgrestore', 'status', 'rpc.statd', 'showmount', 'e2fsck', 'pvck', 'mount.lowntfs-3g', 'mkhomedir_helper', 'blockdev', 'sulogin', 'fsadm', 'mkfs.minix', 'lvreduce', 'cfdisk', 'lvmconf', 'mkfs.bfs', 'shadowconfig', 'kbdrate', 'fdisk', 'lvmconfig', 'vgrename', 'iptables-restore', 'lvremove', 'lvcreate', 'switch_root', 'lvrename', 'pvdisplay', 'dumpe2fs', 'ntfscp', 'iwevent', 'lvmpolld', 'logsave', 'mount.aufs', 'lvmsar', 'mkntfs', 'pam_tally', 'iptables-save', 'mount.ntfs', 'lvm', 'mii-tool', 'blkid', 'vgreduce', 'lvdisplay', 'udevadm', 'upstart-socket-bridge', 'lsmod', 'mount.nfs', 'pam_tally2', 'wpa_cli', 'getpcaps', 'wpa_supplicant', 'vgsplit', 'acpi_available', 'mkfs.ext3', 'mkfs.ext2', 'request-key', 'fsck.ext2', 'ipmaddr', 'raw', 'pvmove', 'ldconfig.real', 'rarp', 'fsck.ext3', 'lvmetad', 'vgimportclone', 'iwlist', 'mount.fuse', 'vgremove', 'hdparm', 'modinfo', 'vgmknodes', 'iwgetid', 'plymouthd', 'ip6tables-apply', 'upstart-file-bridge', 'iwconfig', 'dmsetup', 'mntctl', 'ldconfig', 'dhclient', 'findfs', 'lvmsadc', 'vgscan', 'plipconfig', 'upstart-udev-bridge', 'stop'] ['ntfsinfo', 'pwd', 'bunzip2', 'rmdir', 'pidof', 'lsblk', 'rm', 'uname', 'domainname', 'mt', 'nc', 'busybox', 'bsd-csh', 'mv', 'tar', 'tcsh', 'ulockmgr_server', 'sh.distrib', 'sed', 'ntfswipe', 'ntfscluster', 'less', 'cpio', 'plymouth', 'bzfgrep', 'echo', 'cp', 'cgroups-umount', 'ypdomainname', 'sync', 'lowntfs-3g', 'egrep', 'bzip2', 'bzmore', 'ntfs-3g.probe', 'zforce', 'zcat', 'open', 'ss', 'ping', 'whiptail', 'ntfscmp', 'kill', 'zsh', 'zmore', 'netstat', 'mkdir', 'bzip2recover', 'gzip', 'chacl', 'lesspipe', 'bzgrep', 'zcmp', 'unicode_start', 'ntfsmove', 'bzexe', 'ip', 'loadkeys', 'mknod', 'chmod', 'login', 'keyctl', 'getfacl', 'setfont', 'fusermount', 'date', 'bzless', 'more', 'cat', 'ntfscat', 'dmesg', 'which', 'df', 'znew', 'true', 'ln', 'mt-gnu', 'zgrep', 'bzcmp', 'lessecho', 'systemd-hwdb', 'vdir', 'kmod', 'ls', 'ntfstruncate', 'grep', 'chgrp', 'sh', 'netcat', 'openvt', 'dd', 'dash', 'bzcat', 'nc.openbsd', 'ntfsls', 'mount', 'fgconsole', 'zless', 'run-parts', 'fuser', 'csh', 'readlink', 'setfacl', 'chown', 'ntfs-3g.usermap', 'bzdiff', 'zfgrep', 'wdctl', 'ntfs-3g.secaudit', 'lesskey', 'ed', 'setupcon', 'zegrep', 'loginctl', 'zsh5', 'ntfsfix', 'tempfile', 'ps', 'touch', 'umount', 'static-sh', 'sleep', 'mountpoint', 'dumpkeys', 'ntfs-3g', 'findmnt', 'nisdomainname', 'rnano', 'ping6', 'stty', 'hostname', 'ntfsfallocate', 'kbd_mode', 'rbash', 'cgroups-mount', 'udevadm', 'lsmod', 'chvt', 'red', 'tailf', 'lessfile', 'nano', 'su', 'fgrep', 'gunzip', 'mktemp', 'dnsdomainname', 'bash', 'dir', 'zdiff', 'gzexe', 'false', 'rzsh', 'uncompress', 'bzegrep'] [] [] ['qt.conf', 'h5fc', 'raw2tiff', 'syncqt.pl', 'hb-view', 'grin', 'bunzip2', 'gst-discoverer-1.0', 'pcregrep', 'fc-cache', 'gendict', 'jupyter-qtconsole', 'hb-ot-shape-closure', 'qdbuscpp2xml', 'h5jam', 'lzmainfo', 'lrelease', 'ptrepack', 'makeconv', 'jupyter-run', 'rst2html.py', 'iptest2', 'unxz', 'qgltf', 'cythonize', 'rst2odt_prepstyles.py', 'automat-visualize', 'gsettings', 'genrb', 'py.test', 'conch', 'h5clear', 'repc', 'wish', 'python', 'lzcmp', 'dask-remote', 'lzma', 'fc-scan', 'pygmentize', 'dask-ssh', 'pngfix', 'rst2xml.py', 'h5diff', 'ppm2tiff', 'rst2latex.py', 'dbus-uuidgen', 'dbus-cleanup-sockets', 'smtpd.py', 'conda-convert', 'sphinx-autogen', 'gio-querymodules', 'toe', 'bzfgrep', 'libtoolize', 'jupyter-lab', 'conda-server', 'tic', 'kill_instance', 'qtpaths', 'canbusutil', 'freetype-config', 'h5watch', 'blaze-server', 'gencnval', 'tiffset', 'rcc', 'bzip2', 'bzmore', 'conda-build', 'designer', 'xzmore', 'lupdate', 'rstpep2html.py', 'fax2tiff', 'wrjpgcom', 'cfadmin', 'hb-shape', 'jupyter-labhub', 'vba_extract.py', 'cftp', 'cygdb', 'chardetect', 'rst2man.py', 'pycodestyle', 'rst2s5.py', 'openssl', 'glib-mkenums', 'xzfgrep', 'gdbus-codegen', 'launch_instance', 'conda-develop', 'gapplication', 'gresource', 'pytest', 'list_instances', 'qdbusxml2cpp', 'dbus-send', 'rst2pseudoxml.py', 'flask', 'lzegrep', 'icuinfo', 'lzless', 'tiffcmp', 'qtattributionsscanner', 'anaconda-project', 'fc-conflist', 'bzip2recover', 'lzcat', 'pal2rgb', 'h5dump', 'easy_install', 'gst-play-1.0', 'wheel', 'tkconch', 'fax2ps', 'fitsheader', 'samp_hub', 'qmltestrunner', 'h5perf_serial', 'unlzma', 'spyder', 'qmlcachegen', 'jupyter-migrate', 'bzgrep', 'odbc_config', 'dbus-launch', 'sphinx-quickstart', 'sqlite3', 'fitscheck', 'fits2bitmap', 'tiffmedian', 'h5import', 'conda-render', 'mailmail', 'icu-config', 'jupyter-labextension', 'pyreverse', 'reset', 'gst-device-monitor-1.0', 'xzcmp', 'qhelpgenerator', 'rst2xetex.py', 'conda', 'pango-view', 'qmake', 'anaconda', 'gtester', 'xsltproc', 'jupyter-nbextension', 'glib-genmarshal', 'dask-submit', 'python2.7', 'xzegrep', 'rst2html4.py', 'bokeh', 'pylupdate5', 'twistd', 'bzless', 'qscxmlc', 'route53', 'pycc', 'libpng16-config', 'pixeltool', 'tiff2rgba', 'infotocap', 'elbadmin', 'qtplugininfo', 'slencheck', 'sip', 'conda-metapackage', 'qmlscene', 'dynamodb_dump', 'h5repack', 'tqdm', 'dynamodb_load', 'infocmp', 'gst-typefind-1.0', 'qlalr', 'conda-inspect', 'glacier', 'mturk', 'qwebengine_convert_dict', 'pybabel', 'pttree', 'pyflakes', 'fitsinfo', 'c_rehash', 'tiffcrop', 'bzcmp', 'lzdiff', 'navigator-updater', 'python-config', 'fribidi', 'moc', 'jupyter-trust', 'tiff2bw', 'djpeg', '2to3', 'xml2-config', 'idle', 'h5ls', 'h5c++', 'instance_events', 'skivi', 'captoinfo', 'pkgdata', 'xzgrep', 'jupyter', 'isql', 'pylint', 'conda-env', 'gdbus', 'xmlpatterns', 'dask-worker', 'qtdiag', 'curve_keygen', 'dbus-daemon', 'ptdump', 'ipython', 'activate', 'tabs', 'bzcat', 'python2.7-config', 'cairo-trace', 'lss3', 'pyami_sendmail', 'gst-stats-1.0', 'tiff2ps', 'conda-index', 'wish8.6', 'pip', 'qmllint', 'gobject-query', 'rdjpgcom', 'f2py', 'pyrcc5', 'lzfgrep', 'sqlite3_analyzer', 'png-fix-itxt', 'jpegtran', 'qmlprofiler', 'anaconda-navigator', 'fc-query', 'bzdiff', 'epylint', 'fixqt4headers.pl', 'tclsh8.6', 'jupyter-kernel', 'linguist', 'dbus-update-activation-environment', 'genbrk', 'rst2html5.py', 'tiff2pdf', 'fc-validate', 'lzgrep', 'curl', 'xslt-config', 'cython', 'nosetests', 'pep8', 'pyhtmlizer', 'xzcat', 'pydoc', 'pango-list', 'iusql', 'lzmore', 'dbus-test-tool', 'h5debug', 'tput', 'conda-skeleton', 'qmlplugindump', 'cwutil', 'tiffdither', 'xmlpatternsvalidator', 'fetch_file', 'tiffsplit', 'unit2', 'clear', 'qmlmin', 'jupyter-console', 'grind', 'python2', 'dbus-monitor', 'pcre-config', 'lconvert', 'isympy', 'pandoc-citeproc', 'dask-mpi', 'dbus-run-session', 'pt2to3', 'glib-gettextize', 'sdbadmin', 'h5format_convert', 'fc-match', 'python2-config', 'jupyter-troubleshoot', 'qdbus', 'pandoc', 'tclsh', 'qmlimportscanner', 'xzdiff', 'wcslint', 'pyuic5', 'patchelf', 'h5unjam', 'binstar', 'h5stat', 'qdbusviewer', 'qdoc', 'libpng-config', 'dask-scheduler', 'gencfu', 'tset', 'fc-pattern', 'derb', 'rst2odt.py', 'tiffdump', 'xzdec', 'gst-inspect-1.0', 'volint', 'xz', 'numba', 'taskadmin', 'glib-compile-schemas', 'libtool', 'h5copy', 'odbcinst', 'asadmin', 'gtester-report', 'tiffcp', 'pkginfo', 'hb-subset', 'h5redeploy', 'ipython2', 'fitsdiff', 's3put', 'h5repart', 'qcollectiongenerator', 'odo', 'jupyter-notebook', 'h5mkgrp', 'deactivate', 'bundle_image', 'jupyter-kernelspec', 'fc-list', 'qml', 'gst-launch-1.0', 'gif2h5', 'xmlwf', 'pcretest', 'xmllint', 'jupyter-nbconvert', 'jlpm', 'xmlcatalog', 'lzmadec', 'twist', 'isort', 'xzless', 'ckeygen', 'glib-compile-resources', 'jupyter-serverextension', 'symilar', 'qhelpconverter', 'curl-config', 'trial', 'jupyter-bundlerextension', 'runxlrd.py', 'jsonschema', 'qmleasing', 'ncursesw6-config', 'assistant', 'h52gif', 'sphinx-build', 'uic', 'h5cc', 'dltest', 'bzegrep', 'cjpeg', 'sphinx-apidoc', 'iptest', 'gio', 'cq', 'tiffinfo', 'fc-cat'] ['sacctmgr', 'srun', 'sshare', 'scontrol', 'sreport', 'sbatch', 'squeue', 'scancel', 'salloc', 'sacct', 'strigger', 'sprio', 'sstat', 'sinfo', 'sdiag', 'smap', 'sattach', 'sbcast'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] cmake not found child config.packages.cmake 0.014529 ================================================================================ TEST consistencyChecks from config.packages.unittestcpp(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.unittestcpp(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.002818 ================================================================================ TEST consistencyChecks from config.packages.googletest(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.googletest(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.002686 ================================================================================ TEST consistencyChecks from config.packages.eigen(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.eigen(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.002654 ================================================================================ TEST consistencyChecks from config.packages.szlib(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.szlib(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.002656 ================================================================================ TEST consistencyChecks from config.packages.zlib(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.zlib(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.zlib 0.002635 child config.packages.mathlib 0.000040 ================================================================================ TEST consistencyChecks from config.packages.tetgen(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.002630 ================================================================================ TEST consistencyChecks from config.packages.tchem(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.002645 ================================================================================ TEST consistencyChecks from config.packages.saws(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.002652 ================================================================================ TEST consistencyChecks from config.packages.libpng(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.libpng(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.002628 ================================================================================ TEST consistencyChecks from config.packages.combblas(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.combblas(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.002651 ================================================================================ TEST consistencyChecks from config.packages.metis(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.metis(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.metis(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.metis 0.002616 ================================================================================ TEST consistencyChecks from config.packages.pragmatic(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.pragmatic(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.002613 ================================================================================ TEST consistencyChecks from config.packages.parmetis(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.parmetis(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.parmetis 0.002601 ================================================================================ TEST consistencyChecks from config.packages.Chaco(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.Chaco(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.002658 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST consistencyChecks from config.packages.hdf5(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.008219 ================================================================================ TEST consistencyChecks from config.packages.med(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.med(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.med 0.002692 ================================================================================ TEST consistencyChecks from config.packages.cgns(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.002313 ================================================================================ TEST consistencyChecks from config.packages.ascem-io(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.ascem-io(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.002662 ================================================================================ TEST consistencyChecks from config.packages.pflotran(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.pflotran(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.002659 ================================================================================ TEST consistencyChecks from config.packages.alquimia(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.alquimia(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.002632 ================================================================================ TEST consistencyChecks from config.packages.SAMRAI(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.SAMRAI(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.002617 ================================================================================ TEST consistencyChecks from config.packages.ADIOS2(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.ADIOS2(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.ADIOS2(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.ADIOS2(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS2 0.002642 child config.packages.flibs 0.000032 ================================================================================ TEST consistencyChecks from config.packages.pnetcdf(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.pnetcdf(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.002655 ================================================================================ TEST consistencyChecks from config.packages.netcdf(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.002614 ================================================================================ TEST consistencyChecks from config.packages.exodusii(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.002622 ================================================================================ TEST consistencyChecks from config.packages.fblaslapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.fblaslapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.fblaslapack 0.002464 ================================================================================ TEST consistencyChecks from config.packages.X(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.X(/home/fbrarda/petsc/config/BuildSystem/config/package.py:870) TESTING: checkDependencies from config.packages.X(config/BuildSystem/config/package.py:870) ================================================================================ TEST configureLibrary from config.packages.X(/home/fbrarda/petsc/config/BuildSystem/config/package.py:895) TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_XSetWMName': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5: undefined reference to `XSetWMName' collect2: error: ld returned 1 exit status Checking for library in Compiler specific search X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lX11 -lstdc++ -ldl Defined "HAVE_LIBX11" to "1" Checking for optional headers [] in Compiler specific search X: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Found header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Checking for headers ['X11/Xlib.h'] in Compiler specific search X: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/home/fbrarda/petsc/arch-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/fbrarda/petsc/arch-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['X11/Xlib.h'] in ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkVersion from config.packages.X(/home/fbrarda/petsc/config/BuildSystem/config/package.py:1024) TESTING: checkVersion from config.packages.X(config/BuildSystem/config/package.py:1024) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.X(/home/fbrarda/petsc/config/BuildSystem/config/package.py:953) TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.X 0.438554 ================================================================================ TEST consistencyChecks from config.packages.Triangle(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.Triangle(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.003273 ================================================================================ TEST consistencyChecks from config.packages.GLVis(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.GLVis(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.002735 ================================================================================ TEST consistencyChecks from config.packages.hwloc(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.hwloc(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.002714 ================================================================================ TEST consistencyChecks from config.packages.pthread(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.pthread(/home/fbrarda/petsc/config/BuildSystem/config/package.py:870) TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:870) ================================================================================ TEST configureLibrary from config.packages.pthread(/home/fbrarda/petsc/config/BuildSystem/config/packages/pthread.py:20) TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_pthread_create': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5: undefined reference to `pthread_create' collect2: error: ld returned 1 exit status Checking for library in Compiler specific search PTHREAD: ['libpthread.a'] ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library ['libpthread.a'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -lpthread -lstdc++ -ldl Defined "HAVE_LIBPTHREAD" to "1" Checking for optional headers [] in Compiler specific search PTHREAD: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Found header files [] in ['/home/fbrarda/petsc/arch-opt/include'] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: ['/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/home/fbrarda/petsc/arch-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/fbrarda/petsc/arch-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['pthread.h'] in ['/home/fbrarda/petsc/arch-opt/include'] All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.packages.pthread Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.pthread/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.packages.pthread/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.packages.pthread/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] pthread_barrier_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.pthread/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.packages.pthread/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.packages.pthread/conftest.c:6:12: warning: unused variable ‘a’ [-Wunused-variable] cpu_set_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.packages.MPI /tmp/petsc-l6ax4d0t/config.packages.pthread/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkVersion from config.packages.pthread(/home/fbrarda/petsc/config/BuildSystem/config/package.py:1024) TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1024) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/home/fbrarda/petsc/config/BuildSystem/config/package.py:953) TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.pthread 0.678067 ================================================================================ TEST consistencyChecks from config.packages.egads(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.egads(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.003386 ================================================================================ TEST consistencyChecks from config.packages.PTScotch(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.PTScotch(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.002744 ================================================================================ TEST consistencyChecks from config.packages.Zoltan(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.Zoltan(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.002712 ================================================================================ TEST consistencyChecks from config.packages.ADIOS(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.ADIOS(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.002661 ================================================================================ TEST consistencyChecks from config.packages.openmp(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.openmp(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.002342 ================================================================================ TEST consistencyChecks from config.packages.viennacl(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.viennacl(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.002733 ================================================================================ TEST consistencyChecks from config.packages.ColPack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.ColPack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.002672 ================================================================================ TEST consistencyChecks from config.packages.ADOLC(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.ADOLC(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.002628 ================================================================================ TEST consistencyChecks from config.packages.openblas(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.openblas(/home/fbrarda/petsc/config/BuildSystem/config/package.py:870) TESTING: checkDependencies from config.packages.openblas(config/BuildSystem/config/package.py:870) ================================================================================ TEST configureLibrary from config.packages.openblas(/home/fbrarda/petsc/config/BuildSystem/config/packages/openblas.py:49) TESTING: configureLibrary from config.packages.openblas(config/BuildSystem/config/packages/openblas.py:49) ================================================================================== Checking for a functional openblas Checking for library in User specified root directory OPENBLAS: ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a'] Contents: ['bin', 'lib', 'cmake', 'include'] ================================================================================ TEST check from config.libraries(/home/fbrarda/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [openblas_get_config] in library ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char openblas_get_config(); static void _check_openblas_get_config() { openblas_get_config(); } int main() { _check_openblas_get_config();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -lstdc++ -ldl Defined "HAVE_LIBOPENBLAS" to "1" Checking for optional headers ['openblas_config.h'] in User specified root directory OPENBLAS: ['/opt/packages/openblas/0.2.13-gcc/include', '/home/fbrarda/petsc/arch-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['openblas_config.h'] in ['/opt/packages/openblas/0.2.13-gcc/include', '/home/fbrarda/petsc/arch-opt/include'] Checking include with compiler flags var CPPFLAGS ['/opt/packages/openblas/0.2.13-gcc/include', '/home/fbrarda/petsc/arch-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.headers -I/opt/packages/openblas/0.2.13-gcc/include -I/home/fbrarda/petsc/arch-opt/include /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['openblas_config.h'] in ['/opt/packages/openblas/0.2.13-gcc/include', '/home/fbrarda/petsc/arch-opt/include'] Checking for headers [] in User specified root directory OPENBLAS: ['/opt/packages/openblas/0.2.13-gcc/include', '/home/fbrarda/petsc/arch-opt/include'] For openblas unable to find version information since includes and version includes are missing skipping version check ================================================================================ TEST checkVersion from config.packages.openblas(/home/fbrarda/petsc/config/BuildSystem/config/package.py:1024) TESTING: checkVersion from config.packages.openblas(config/BuildSystem/config/package.py:1024) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For openblas unable to find version information since includes and version includes are missing skipping version check ================================================================================ TEST checkSharedLibrary from config.packages.openblas(/home/fbrarda/petsc/config/BuildSystem/config/package.py:953) TESTING: checkSharedLibrary from config.packages.openblas(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.openblas 0.288477 ================================================================================ TEST consistencyChecks from config.packages.blis(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.blis(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.003332 ================================================================================ TEST consistencyChecks from config.packages.f2cblaslapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.002506 ================================================================================ TEST consistencyChecks from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:870) TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:870) ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/packages/BlasLapack.py:448) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:448) ================================================================================ Checking for BLAS and LAPACK in OpenBLAS with full path ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-L/home/fbrarda/petsc/arch-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/opt/slurm/14.11.3/lib', '-L/opt/slurm/14.11.3/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/fbrarda/petsc', '-L/home/fbrarda/petsc', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -lm -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBOPENBLAS" to "1" Checking for functions [dgetrs_] in library ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-L/home/fbrarda/petsc/arch-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/opt/slurm/14.11.3/lib', '-L/opt/slurm/14.11.3/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/fbrarda/petsc', '-L/home/fbrarda/petsc', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -lm -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBOPENBLAS" to "1" Checking for functions [dgeev_] in library ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-L/home/fbrarda/petsc/arch-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/opt/slurm/14.11.3/lib', '-L/opt/slurm/14.11.3/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/fbrarda/petsc', '-L/home/fbrarda/petsc', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -lm -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBOPENBLAS" to "1" Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ================================================================================ TEST checkMKL from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/packages/BlasLapack.py:545) TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:545) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-L/home/fbrarda/petsc/arch-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/opt/slurm/14.11.3/lib', '-L/opt/slurm/14.11.3/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/fbrarda/petsc', '-L/home/fbrarda/petsc', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -lm -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' collect2: error: ld returned 1 exit status ================================================================================ TEST checkESSL from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/packages/BlasLapack.py:583) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:583) Check for the IBM ESSL library Checking for functions [iessl] in library ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-L/home/fbrarda/petsc/arch-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/opt/slurm/14.11.3/lib', '-L/opt/slurm/14.11.3/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/fbrarda/petsc', '-L/home/fbrarda/petsc', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -lm -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5: undefined reference to `iessl' collect2: error: ld returned 1 exit status ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/packages/BlasLapack.py:591) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:591) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-L/home/fbrarda/petsc/arch-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/opt/slurm/14.11.3/lib', '-L/opt/slurm/14.11.3/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/fbrarda/petsc', '-L/home/fbrarda/petsc', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -lm -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:5: undefined reference to `ipessl' collect2: error: ld returned 1 exit status ================================================================================ TEST checkMissing from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/packages/BlasLapack.py:616) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:616) Check for missing LAPACK routines Checking for functions [dgelss_ dgerfs_ dgges_ dhgeqz_ dhseqr_ dorgqr_ dormqr_ dstebz_ dstegr_ dstein_ dsteqr_ dsytri_ dtgsen_ dtrsen_ dtrtrs_] in library ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a'] ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-L/home/fbrarda/petsc/arch-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/opt/slurm/14.11.3/lib', '-L/opt/slurm/14.11.3/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/fbrarda/petsc', '-L/home/fbrarda/petsc', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dhgeqz_(); static void _check_dhgeqz_() { dhgeqz_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dormqr_(); static void _check_dormqr_() { dormqr_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dstegr_(); static void _check_dstegr_() { dstegr_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } char dsytri_(); static void _check_dsytri_() { dsytri_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dtrtrs_(); static void _check_dtrtrs_() { dtrtrs_(); } int main() { _check_dgelss_(); _check_dgerfs_(); _check_dgges_(); _check_dhgeqz_(); _check_dhseqr_(); _check_dorgqr_(); _check_dormqr_(); _check_dstebz_(); _check_dstegr_(); _check_dstein_(); _check_dsteqr_(); _check_dsytri_(); _check_dtgsen_(); _check_dtrsen_(); _check_dtrtrs_();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -lm -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBOPENBLAS" to "1" ================================================================================ TEST checklsame from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/packages/BlasLapack.py:632) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:632) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['/opt/packages/openblas/0.2.13-gcc/lib/libopenblas.a', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-L/home/fbrarda/petsc/arch-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/opt/slurm/14.11.3/lib', '-L/opt/slurm/14.11.3/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8', '-L/usr/lib/gcc/x86_64-linux-gnu/4.8', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/fbrarda/petsc', '-L/home/fbrarda/petsc', '-Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -lm -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBOPENBLAS" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBSTDC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBMPIFORT" to "1" Defined "HAVE_LIBMPI" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGCC_S" to "1" Defined "HAVE_LIBQUADMATH" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.setCompilers/libconftest.so -shared -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.setCompilers/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lopenblas -lm -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl ================================================================================ TEST checkRuntimeIssues from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/packages/BlasLapack.py:691) TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:691) Determines if BLAS/LAPACK routines use 32 or 64 bit integers All intermediate test results are stored in /tmp/petsc-l6ax4d0t/config.packages.BlasLapack Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.packages.BlasLapack/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot_(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot_(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/config.packages.BlasLapack/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.packages.BlasLapack/conftest.o -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas -lm -lstdc++ -ldl -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-l6ax4d0t/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-l6ax4d0t/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-l6ax4d0t/config.packages.BlasLapack/conftest ERROR while running executable: Could not execute "['/tmp/petsc-l6ax4d0t/config.packages.BlasLapack/conftest']": Segmentation fault (core dumped) Defined "HAVE_64BIT_BLAS_INDICES" to "1" Checking for 64 bit blas indices: program did not return therefore assuming 64 bit blas indices ================================================================================ TEST checkCHeaders from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/packages/BlasLapack.py:523) TESTING: checkCHeaders from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:523) Check for cblas.h and lapacke.h ================================================================================ TEST checkInclude from config.headers(/home/fbrarda/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cblas.h', 'lapacke.h'] in ['/opt/packages/openblas/0.2.13-gcc/include'] Checking include with compiler flags var CPPFLAGS ['/opt/packages/openblas/0.2.13-gcc/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.headers -I/opt/packages/openblas/0.2.13-gcc/include /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/opt/packages/openblas/0.2.13-gcc/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -E -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.headers -I/opt/packages/openblas/0.2.13-gcc/include /tmp/petsc-l6ax4d0t/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['cblas.h', 'lapacke.h'] in ['/opt/packages/openblas/0.2.13-gcc/include'] ================================================================================ TEST checkVersion from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:1024) TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1024) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.BlasLapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:953) TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.BlasLapack 3.426964 ================================================================================ TEST consistencyChecks from config.packages.sundials(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.sundials(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.sundials(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.sundials(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.sundials 0.003404 ================================================================================ TEST consistencyChecks from config.packages.spai(/home/fbrarda/petsc/config/BuildSystem/config/packages/spai.py:53) TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) ================================================================================ TEST alternateConfigureLibrary from config.packages.spai(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.002984 ================================================================================ TEST consistencyChecks from config.packages.pARMS(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.pARMS(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.002712 ================================================================================ TEST consistencyChecks from config.packages.p4est(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.p4est(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.p4est 0.002722 ================================================================================ TEST consistencyChecks from config.packages.mkl_sparse_optimize(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_sparse_optimize(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mkl_sparse_optimize 0.002693 ================================================================================ TEST consistencyChecks from config.packages.mkl_sparse(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.mkl_sparse(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_sparse(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.mkl_sparse(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mkl_sparse 0.002566 ================================================================================ TEST consistencyChecks from config.packages.mkl_cpardiso(/home/fbrarda/petsc/config/BuildSystem/config/packages/mkl_cpardiso.py:20) TESTING: consistencyChecks from config.packages.mkl_cpardiso(config/BuildSystem/config/packages/mkl_cpardiso.py:20) ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_cpardiso(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.002564 ================================================================================ TEST consistencyChecks from config.packages.kokkos(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.kokkos(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.kokkos(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.kokkos(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.kokkos 0.002691 ================================================================================ TEST consistencyChecks from config.packages.kokkos-kernels(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.kokkos-kernels(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.kokkos-kernels 0.002704 ================================================================================ TEST consistencyChecks from config.packages.hpddm(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.hpddm(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.hpddm(/home/fbrarda/petsc/config/BuildSystem/config/packages/hpddm.py:123) TESTING: alternateConfigureLibrary from config.packages.hpddm(config/BuildSystem/config/packages/hpddm.py:123) Defined make rule "hpddm-build" with dependencies "" and code [] Defined make rule "hpddm-install" with dependencies "" and code [] child config.packages.hpddm 0.003340 ================================================================================ TEST consistencyChecks from config.packages.magma(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.magma(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.magma(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.magma(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.magma 0.002746 ================================================================================ TEST consistencyChecks from config.packages.kblas(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.kblas(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.kblas(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.kblas(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.kblas 0.002415 ================================================================================ TEST consistencyChecks from config.packages.hara(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.hara(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.hara(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.hara(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.hara 0.002388 ================================================================================ TEST consistencyChecks from config.packages.fftw(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.fftw(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.fftw(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.fftw 0.002659 ================================================================================ TEST consistencyChecks from config.packages.elemental(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.elemental(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.elemental(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.elemental(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.elemental 0.002719 ================================================================================ TEST consistencyChecks from config.packages.bamg(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.bamg(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.bamg(/home/fbrarda/petsc/config/BuildSystem/config/packages/bamg.py:85) TESTING: alternateConfigureLibrary from config.packages.bamg(config/BuildSystem/config/packages/bamg.py:85) Defined make rule "bamg-build" with dependencies "" and code [] Defined make rule "bamg-install" with dependencies "" and code [] child config.packages.bamg 0.003447 ================================================================================ TEST consistencyChecks from config.packages.ml(/home/fbrarda/petsc/config/BuildSystem/config/packages/ml.py:61) TESTING: consistencyChecks from config.packages.ml(config/BuildSystem/config/packages/ml.py:61) ================================================================================ TEST alternateConfigureLibrary from config.packages.ml(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.ml(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ml 0.002951 ================================================================================ TEST consistencyChecks from config.packages.mkl_pardiso(/home/fbrarda/petsc/config/BuildSystem/config/packages/mkl_pardiso.py:21) TESTING: consistencyChecks from config.packages.mkl_pardiso(config/BuildSystem/config/packages/mkl_pardiso.py:21) ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_pardiso(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mkl_pardiso 0.002525 ================================================================================ TEST consistencyChecks from config.packages.SuperLU_DIST(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU_DIST(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU_DIST 0.002654 ================================================================================ TEST consistencyChecks from config.packages.SuperLU(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.SuperLU(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.SuperLU(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU 0.002711 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST consistencyChecks from config.packages.SuiteSparse(/home/fbrarda/petsc/config/BuildSystem/config/packages/SuiteSparse.py:172) TESTING: consistencyChecks from config.packages.SuiteSparse(config/BuildSystem/config/packages/SuiteSparse.py:172) ================================================================================ TEST alternateConfigureLibrary from config.packages.SuiteSparse(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.SuiteSparse 0.008360 ================================================================================ TEST consistencyChecks from config.packages.PaStiX(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.PaStiX(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.PaStiX(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.PaStiX(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.PaStiX 0.002762 ================================================================================ TEST consistencyChecks from config.packages.scalapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.scalapack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.scalapack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.scalapack 0.002659 ================================================================================ TEST consistencyChecks from config.packages.strumpack(/home/fbrarda/petsc/config/BuildSystem/config/packages/strumpack.py:86) TESTING: consistencyChecks from config.packages.strumpack(config/BuildSystem/config/packages/strumpack.py:86) ================================================================================ TEST alternateConfigureLibrary from config.packages.strumpack(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.strumpack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.strumpack 0.002917 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST consistencyChecks from config.packages.MUMPS(/home/fbrarda/petsc/config/BuildSystem/config/packages/MUMPS.py:53) TESTING: consistencyChecks from config.packages.MUMPS(config/BuildSystem/config/packages/MUMPS.py:53) ================================================================================ TEST alternateConfigureLibrary from config.packages.MUMPS(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.MUMPS 0.008720 ================================================================================ TEST consistencyChecks from config.packages.MOAB(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.MOAB(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.MOAB 0.002731 ================================================================================ TEST consistencyChecks from config.packages.Chombo(/home/fbrarda/petsc/config/BuildSystem/config/packages/Chombo.py:131) TESTING: consistencyChecks from config.packages.Chombo(config/BuildSystem/config/packages/Chombo.py:131) ================================================================================ TEST alternateConfigureLibrary from config.packages.Chombo(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.Chombo(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Chombo 0.002926 ================================================================================ TEST consistencyChecks from config.packages.hypre(/home/fbrarda/petsc/config/BuildSystem/config/packages/hypre.py:105) TESTING: consistencyChecks from config.packages.hypre(config/BuildSystem/config/packages/hypre.py:105) ================================================================================ TEST alternateConfigureLibrary from config.packages.hypre(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.hypre(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.hypre 0.002902 ================================================================================ TEST consistencyChecks from config.packages.Trilinos(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.Trilinos(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.Trilinos(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.Trilinos(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Trilinos 0.002693 ================================================================================ TEST consistencyChecks from config.packages.xSDKTrilinos(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.xSDKTrilinos(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.xSDKTrilinos 0.002694 ================================================================================ TEST consistencyChecks from config.packages.mstk(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.mstk(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.mstk(/home/fbrarda/petsc/config/BuildSystem/config/package.py:957) TESTING: alternateConfigureLibrary from config.packages.mstk(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mstk 0.002702 ================================================================================ TEST consistencyChecks from config.packages.MFEM(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.MFEM(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.MFEM(/home/fbrarda/petsc/config/BuildSystem/config/packages/MFEM.py:186) TESTING: alternateConfigureLibrary from config.packages.MFEM(config/BuildSystem/config/packages/MFEM.py:186) Defined make rule "mfem-build" with dependencies "" and code [] Defined make rule "mfem-install" with dependencies "" and code [] child config.packages.MFEM 0.003424 ================================================================================ TEST consistencyChecks from config.packages.AMReX(/home/fbrarda/petsc/config/BuildSystem/config/package.py:961) TESTING: consistencyChecks from config.packages.AMReX(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.AMReX(/home/fbrarda/petsc/config/BuildSystem/config/packages/AMReX.py:157) TESTING: alternateConfigureLibrary from config.packages.AMReX(config/BuildSystem/config/packages/AMReX.py:157) Defined make rule "amrex-build" with dependencies "" and code [] Defined make rule "amrex-install" with dependencies "" and code [] child config.packages.AMReX 0.003530 ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:690) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:690) All intermediate test results are stored in /tmp/petsc-l6ax4d0t/PETSc.Configure Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c:4:15: error: ‘RTLD_DEFAULT’ undeclared here (not in a function) void *ptr = RTLD_DEFAULT; ^ Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ================================================================================ TEST configurePrefetch from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:515) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:515) Sees if there are any prefetch functions supported Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" ================================================================================ TEST configureUnused from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:576) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:576) Sees if __attribute((unused)) is supported Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c:7:5: warning: unused variable ‘j’ [-Wunused-variable] int j = myfunc(&i); ^ Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "UNUSED" to "__attribute((unused))" ================================================================================ TEST configureDeprecated from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:594) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:594) Check if __attribute((deprecated)) is supported Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c:3:38: warning: ‘myfunc’ defined but not used [-Wunused-function] __attribute((deprecated)) static int myfunc(void) { return 1;} ^ Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED_FUNCTION(why)" to "__attribute((deprecated))" Defined "DEPRECATED_TYPEDEF(why)" to "__attribute((deprecated))" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c:3:16: error: expected ‘,’ or ‘}’ before ‘__attribute’ enum E {oldval __attribute((deprecated)), newval }; ^ Source: #include "confdefs.h" #include "conffix.h" enum E {oldval __attribute((deprecated)), newval }; int main() { ; return 0; } Defined "DEPRECATED_ENUM(why)" to " " Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define TEST _Pragma("GCC warning "Testing _Pragma"") value int main() { ; return 0; } Defined "DEPRECATED_MACRO(why)" to "_Pragma(why)" ================================================================================ TEST configureIsatty from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:588) TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:588) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ================================================================================ TEST configureExpect from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:643) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:643) Sees if the __builtin_expect directive is supported Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" ================================================================================ TEST configureAlign from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:627) TESTING: configureAlign from PETSc.Configure(config/PETSc/Configure.py:627) Check if __attribute(aligned) is supported Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" struct mystruct {int myint;} __attribute((aligned(16))); char assert_aligned[(sizeof(struct mystruct)==16)*2-1]; int main() { ; return 0; } Defined "ATTRIBUTEALIGNED(size)" to "__attribute((aligned(size)))" Defined "HAVE_ATTRIBUTEALIGNED" to "1" ================================================================================ TEST configureFunctionName from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:650) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:650) Sees if the compiler supports __func__ or a variant. Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "FUNCTION_NAME_C" to "__func__" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicxx -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "FUNCTION_NAME_CXX" to "__func__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:668) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:668) Determine what to use for uintptr_t Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c:6:18: warning: unused variable ‘i’ [-Wunused-variable] int x; uintptr_t i = (uintptr_t)&x;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" ================================================================================ TEST configureSolaris from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:695) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:695) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:708) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:708) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:714) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:714) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetComputerName] in library ['kernel32'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['advapi32'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['User32.lib'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['user32'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.libraries/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/config.libraries/conftest.c:4:21: fatal error: windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/config.types/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/config.types/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/config.types/conftest.c:11:9: warning: unused variable ‘a’ [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c:6:7: warning: unused variable ‘u’ [-Wunused-variable] uid_t u; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c:8:5: warning: unused variable ‘a’ [-Wunused-variable] int a=R_OK; ^ Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c:3:21: fatal error: windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c:3:21: fatal error: windows.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/home/fbrarda/petsc"" Defined make macro "wPETSC_DIR" to "/home/fbrarda/petsc" Defined "ARCH" to ""arch-opt"" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:792) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:792) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST configureDefaultArch from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:808) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:808) ================================================================================ TEST configureScript from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:825) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:825) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:864) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:864) Setup the directories for installation Defined make rule "print_mesg_after_build" with dependencies "" and code ['-@echo "========================================="', '-@echo "Now to check if the libraries are working do:"', '-@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check"', '-@echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:880) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:880) ================================================================================ TEST configureAtoll from PETSc.Configure(/home/fbrarda/petsc/config/PETSc/Configure.py:571) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:571) Checks if atoll exists Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c:7:6: warning: unused variable ‘v’ [-Wunused-variable] long v = atoll("25"); ^ Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -lstdc++ -ldl Defined "HAVE_ATOLL" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -show stdout: gcc -fPIC -fstack-protector -g -O -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi Defined "MPICC_SHOW" to ""gcc -fPIC -fstack-protector -g -O -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi"" Defined make macro "CC_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O " Defined "HAVE_CXX" to "1" Defined make macro "CXXPP_FLAGS" to " " Defined make macro "CXX_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O " Defined make macro "CXX_LINKER" to "/home/fbrarda/petsc/arch-opt/bin/mpicxx" Defined make macro "CXX_LINKER_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O" Defined make macro "CPP_FLAGS" to " " Defined make macro "PCC" to "/home/fbrarda/petsc/arch-opt/bin/mpicc" Defined make macro "PCC_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O " Defined make macro "PCPP_FLAGS" to " " Defined make macro "PFLAGS" to "${CFLAGS}" Defined make macro "PPPFLAGS" to "${CPPFLAGS}" Defined make macro "PY_CFLAGS" to "" Defined make macro "PY_CPPFLAGS" to "" Defined make macro "CC_SUFFIX" to "o" Defined make macro "PCC_LINKER" to "/home/fbrarda/petsc/arch-opt/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O" Defined make macro "CC_LINKER_SUFFIX" to "" Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O " Defined make macro "FC_SUFFIX" to "o" Defined make macro "FC_LINKER" to "/home/fbrarda/petsc/arch-opt/bin/mpif90" Defined make macro "FC_LINKER_FLAGS" to " -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O" Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Defined make macro "SL_LINKER" to "/home/fbrarda/petsc/arch-opt/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" Running Executable WITHOUT threads to time it out Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" Running Executable WITHOUT threads to time it out Executing: /home/fbrarda/petsc/arch-opt/bin/mpicc -c -o /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.o -I/tmp/petsc-l6ax4d0t/config.utilities.closure -I/tmp/petsc-l6ax4d0t/config.compilersFortran -I/tmp/petsc-l6ax4d0t/config.headers -I/tmp/petsc-l6ax4d0t/config.utilities.cacheDetails -I/tmp/petsc-l6ax4d0t/config.functions -I/tmp/petsc-l6ax4d0t/config.utilities.featureTestMacros -I/tmp/petsc-l6ax4d0t/config.utilities.missing -I/tmp/petsc-l6ax4d0t/PETSc.options.scalarTypes -I/tmp/petsc-l6ax4d0t/config.compilers -I/tmp/petsc-l6ax4d0t/config.packages.MPI -I/tmp/petsc-l6ax4d0t/config.packages.BlasLapack -I/tmp/petsc-l6ax4d0t/config.packages.pthread -I/tmp/petsc-l6ax4d0t/config.setCompilers -I/tmp/petsc-l6ax4d0t/config.libraries -I/tmp/petsc-l6ax4d0t/config.types -I/tmp/petsc-l6ax4d0t/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-l6ax4d0t/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas" Defined make macro "BLASLAPACK_INCLUDE" to "-I/opt/packages/openblas/0.2.13-gcc/include" Defined "HAVE_OPENBLAS" to "1" Defined make macro "OPENBLAS_LIB" to "-Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas" Defined make macro "OPENBLAS_INCLUDE" to "-I/opt/packages/openblas/0.2.13-gcc/include" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "-lpthread" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_X" to "1" Defined make macro "X_LIB" to "-lX11" Defined make macro "X_INCLUDE" to "" Defined "HAVE_MATHLIB" to "1" Defined make macro "MATHLIB_LIB" to "-lm" Defined make macro "MATHLIB_INCLUDE" to "" Defined "HAVE_REGEX" to "1" Defined make macro "REGEX_LIB" to "" Defined make macro "REGEX_INCLUDE" to "" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/home/fbrarda/petsc/arch-opt/include" Defined "HAVE_MPICH" to "1" Defined make macro "MPICH_LIB" to "" Defined make macro "MPICH_INCLUDE" to "" Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lopenblas -lpthread -lX11 -lm -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl" Defined make macro "PETSC_CC_INCLUDES" to "-I/home/fbrarda/petsc/include -I/home/fbrarda/petsc/arch-opt/include -I/opt/packages/openblas/0.2.13-gcc/include" Defined make macro "PETSC_CC_INCLUDES_INSTALL" to "-I/home/fbrarda/petsc/include -I/home/fbrarda/petsc/arch-opt/include -I/opt/packages/openblas/0.2.13-gcc/include" Defined make macro "PETSC_FC_INCLUDES" to "-I/home/fbrarda/petsc/include -I/home/fbrarda/petsc/arch-opt/include -I/opt/packages/openblas/0.2.13-gcc/include" Defined make macro "PETSC_FC_INCLUDES_INSTALL" to "-I/home/fbrarda/petsc/include -I/home/fbrarda/petsc/arch-opt/include -I/opt/packages/openblas/0.2.13-gcc/include" Defined "LIB_DIR" to ""/home/fbrarda/petsc/arch-opt/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lpetsc -lopenblas -lpthread -lX11 -lm -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--with-cc=gcc --with-cxx=g++ --with-fc=gfortran --with-openblas-dir=/opt/packages/openblas/0.2.13-gcc --download-mpich --with-debugging=0 PETSC_ARCH=arch-opt" ================================================================================ child PETSc.Configure 3.567991 child sum 349.092955 child total 349.140517 **** arch-opt/lib/petsc/conf/petscvariables **** Cxx_VERSION = g++ (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413 MPIFC_SHOW = gfortran -fPIC -ffree-line-length-0 -g -O -I/home/fbrarda/petsc/arch-opt/include -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -lmpifort -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi MPICC_SHOW = gcc -fPIC -fstack-protector -g -O -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi FC_DEFINE_FLAG = -D AR_FLAGS = cr C_VERSION = gcc (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413 AR_ARGFILE = yes FAST_AR_FLAGS = Scq MPICXX_SHOW = g++ -fstack-protector -g -O -fPIC -std=gnu++14 -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -lmpicxx -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi CXX_DEPFLAGS = -MMD -MP C_DEPFLAGS = -MMD -MP FC_VERSION = GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4 FC_DEPFLAGS = -MMD -MP PETSC_SCALAR = real SL_LINKER = /home/fbrarda/petsc/arch-opt/bin/mpicc SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} SOWING_INCLUDE = PETSC_CC_INCLUDES = -I/home/fbrarda/petsc/include -I/home/fbrarda/petsc/arch-opt/include -I/opt/packages/openblas/0.2.13-gcc/include PTHREAD_LIB = -lpthread PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CC_INCLUDES_INSTALL = -I/home/fbrarda/petsc/include -I/home/fbrarda/petsc/arch-opt/include -I/opt/packages/openblas/0.2.13-gcc/include MATHLIB_LIB = -lm PETSC_KSP_LIB_BASIC = -lpetsc CXX_LINKER = /home/fbrarda/petsc/arch-opt/bin/mpicxx OPENBLAS_INCLUDE = -I/opt/packages/openblas/0.2.13-gcc/include CXX_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O REGEX_LIB = PETSC_WITH_EXTERNAL_LIB = -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lpetsc -lopenblas -lpthread -lX11 -lm -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl OPENBLAS_LIB = -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas PTHREAD_INCLUDE = MPI_INCLUDE = -I/home/fbrarda/petsc/arch-opt/include BLASLAPACK_INCLUDE = -I/opt/packages/openblas/0.2.13-gcc/include PETSC_FC_INCLUDES_INSTALL = -I/home/fbrarda/petsc/include -I/home/fbrarda/petsc/arch-opt/include -I/opt/packages/openblas/0.2.13-gcc/include FC_MODULE_OUTPUT_FLAG = -J FC_SUFFIX = o REGEX_INCLUDE = MPICH_LIB = X_LIB = -lX11 PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} CC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CONFIGURE_OPTIONS = --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --with-openblas-dir=/opt/packages/openblas/0.2.13-gcc --download-mpich --with-debugging=0 PETSC_ARCH=arch-opt PFLAGS = ${CFLAGS} PETSC_PRECISION = double PETSC_TAO_LIB_BASIC = -lpetsc PPPFLAGS = ${CPPFLAGS} FPP_FLAGS = MPI_LIB = PETSC_TS_LIB_BASIC = -lpetsc FC_LINKER = /home/fbrarda/petsc/arch-opt/bin/mpif90 PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXXPP_FLAGS = PCC_LINKER_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O CPP_FLAGS = PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} FC_MODULE_FLAG = -I FC_FLAGS = -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O CC_SUFFIX = o wPETSC_DIR = /home/fbrarda/petsc PCC = /home/fbrarda/petsc/arch-opt/bin/mpicc MPICH_INCLUDE = MATHLIB_INCLUDE = PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = PETSC_LIB_BASIC = -lpetsc PY_CPPFLAGS = PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} FC_LINKER_FLAGS = -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O BLASLAPACK_LIB = -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCPP_FLAGS = SOWING_LIB = PCC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -Wl,-rpath,/home/fbrarda/petsc/arch-opt/lib -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath,/opt/slurm/14.11.3/lib -L/opt/slurm/14.11.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/fbrarda/petsc -L/home/fbrarda/petsc -lopenblas -lpthread -lX11 -lm -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl PY_CFLAGS = PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_LINKER = /home/fbrarda/petsc/arch-opt/bin/mpicc PETSC_FC_INCLUDES = -I/home/fbrarda/petsc/include -I/home/fbrarda/petsc/arch-opt/include -I/opt/packages/openblas/0.2.13-gcc/include SHLIBS = libpetsc PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_LANGUAGE = CONLY PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} SL_LINKER_SUFFIX = so X_INCLUDE = CXX_LINKER_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O RM = /bin/rm -f MV = /bin/mv MKDIR = /bin/mkdir -p DIFF = /usr/bin/diff -w PYTHON = /usr/bin/python3 CP = /bin/cp GREP = /bin/grep M4 = /usr/bin/m4 SHELL = /bin/sh SEDINPLACE = /bin/sed -i SED = /bin/sed CC_LINKER_SLFLAG = -Wl,-rpath, LD_SHARED = /home/fbrarda/petsc/arch-opt/bin/mpicc CXX = /home/fbrarda/petsc/arch-opt/bin/mpicxx CC = /home/fbrarda/petsc/arch-opt/bin/mpicc AR_LIB_SUFFIX = a FC = /home/fbrarda/petsc/arch-opt/bin/mpif90 RANLIB = /usr/bin/ranlib CXXPP = /home/fbrarda/petsc/arch-opt/bin/mpicxx -E AR = /usr/bin/ar CPP = /home/fbrarda/petsc/arch-opt/bin/mpicc -E FC_LINKER_SLFLAG = -Wl,-rpath, DYNAMICLINKER = /home/fbrarda/petsc/arch-opt/bin/mpicc CLANGUAGE = C GIT = git PREFIXDIR = /home/fbrarda/petsc/arch-opt PETSC_SCALAR_SIZE = 64 PETSC_INDEX_SIZE = 32 OMAKE_PRINTDIR = /usr/bin/make --print-directory MAKE_TEST_NP = 12 OMAKE = /usr/bin/make --no-print-directory NPMAX = 24 MAKE_LOAD = 36.0 MAKE_NP = 18 MAKE = /usr/bin/make MAKE_PAR_OUT_FLG = MAKE_USER = make SONAME_FUNCTION = $(1).so.$(2) SL_LINKER_FUNCTION = -shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2)) BUILDSHAREDLIB = yes DSYMUTIL = true GDB = /usr/bin/gdb MPIEXECEXECUTABLE = /home/fbrarda/petsc/arch-opt/bin/mpiexec PING = ping MPIEXEC = /home/fbrarda/petsc/arch-opt/bin/mpiexec HOSTNAME = hostname BFORT = /home/fbrarda/petsc/arch-opt/bin/bfort DOCTEXT = /home/fbrarda/petsc/arch-opt/bin/doctext MAPNAMES = /home/fbrarda/petsc/arch-opt/bin/mapnames BIB2HTML = /home/fbrarda/petsc/arch-opt/bin/bib2html **** arch-opt/lib/petsc/conf/petscrules **** print_mesg_after_build: -@echo "=========================================" -@echo "Now to check if the libraries are working do:" -@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check" -@echo "=========================================" libc: ${LIBNAME}(${OBJSC}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} libcxx: ${LIBNAME}(${OBJSCXX}) shared_arch: shared_linux amrex-install: amrex-build: mfem-build: mfem-install: slepc-build: slepc-install: bamg-install: bamg-build: hpddm-build: hpddm-install: libmesh-build: libmesh-install: mpi4py-build: mpi4py-install: petsc4py-build: petsc4py-install: petsc4pytest: **** arch-opt/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_ARCH "arch-opt" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM(why) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/home/fbrarda/petsc" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_64BIT_BLAS_INDICES 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPICH 1 #define PETSC_HAVE_MPICH_NUMVERSION 30302300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_OPENBLAS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SOWING 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/home/fbrarda/petsc/arch-opt/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPICC_SHOW "gcc -fPIC -fstack-protector -g -O -I/home/fbrarda/petsc/arch-opt/include -L/home/fbrarda/petsc/arch-opt/lib -Wl,-rpath -Wl,/home/fbrarda/petsc/arch-opt/lib -Wl,--enable-new-dtags -lmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/usr/bin/python3" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "release" #define PETSC_VERSION_DATE_GIT "2021-02-10 16:45:16 +0000" #define PETSC_VERSION_GIT "v3.14.4-6-g7216cc8" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** arch-opt/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif **** arch-opt/include/petscpkg_version.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_PKG_MPI_VERSION_MAJOR 3 #define PETSC_PKG_MPI_VERSION_MINOR 0 #define PETSC_PKG_MPI_VERSION_SUBMINOR 0 #define PETSC_PKG_MPI_VERSION_ PETSC_PKG_MPI_VERSION_EQ #define PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MPI_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #endif Attempting to save configure hash file: arch-opt/lib/petsc/conf/configure-hash Saved configure hash file: arch-opt/lib/petsc/conf/configure-hash Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- Framework: Directory creation : Created the external packages directory: /home/fbrarda/petsc/arch-opt/externalpackages RDict update : Substitutions were stored in RDict with parent None File creation : Created makefile configure header arch-opt/lib/petsc/conf/petscvariables File creation : Created makefile configure header arch-opt/lib/petsc/conf/petscrules File creation : Created configure header arch-opt/include/petscconf.h File creation : Created C specific configure header arch-opt/include/petscfix.h File creation : Created configure pkg header arch-opt/include/petscpkg_version.h MPICH: Download : Downloaded MPICH into /home/fbrarda/petsc/arch-opt/externalpackages/mpich-3.3.2 Install : Installed MPICH into /home/fbrarda/petsc/arch-opt SOWING: Download : Downloaded SOWING into /home/fbrarda/petsc/arch-opt/externalpackages/petsc-pkg-sowing-674d5f3c1bf3 Install : Installed SOWING into /home/fbrarda/petsc/arch-opt PETSc: File creation : Generated Fortran stubs Build : Set default architecture to arch-opt in lib/petsc/conf/petscvariables File creation : Created arch-opt/lib/petsc/conf/reconfigure-arch-opt.py for automatic reconfiguration Compilers: C Compiler: /home/fbrarda/petsc/arch-opt/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O Version: gcc (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413 C++ Compiler: /home/fbrarda/petsc/arch-opt/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O Version: g++ (Ubuntu 5.3.1-14ubuntu2) 5.3.1 20160413 Fortran Compiler: /home/fbrarda/petsc/arch-opt/bin/mpif90 -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O Version: GNU Fortran (Ubuntu 4.8.4-2ubuntu1~14.04.4) 4.8.4 Linkers: Shared linker: /home/fbrarda/petsc/arch-opt/bin/mpicc -shared -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O Dynamic linker: /home/fbrarda/petsc/arch-opt/bin/mpicc -shared -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O Libraries linked against: -lstdc++ -ldl BlasLapack: Includes: -I/opt/packages/openblas/0.2.13-gcc/include Library: -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas uses 8 byte integers MPI: Version: 3 Includes: -I/home/fbrarda/petsc/arch-opt/include Mpiexec: /home/fbrarda/petsc/arch-opt/bin/mpiexec MPICH_NUMVERSION: 30302300 MPICH: pthread: Library: -lpthread X: Library: -lX11 openblas: Includes: -I/opt/packages/openblas/0.2.13-gcc/include Library: -Wl,-rpath,/opt/packages/openblas/0.2.13-gcc/lib -L/opt/packages/openblas/0.2.13-gcc/lib -lopenblas regex: sowing: Version: 1.1.26 /home/fbrarda/petsc/arch-opt/bin/bfort Language used to compile PETSc: C PETSc: PETSC_ARCH: arch-opt PETSC_DIR: /home/fbrarda/petsc Prefix: Scalar type: real Precision: double Support for __float128 Integer size: 4 bytes Single library: yes Shared libraries: yes Memory alignment from malloc(): 16 bytes Using GNU make: /usr/bin/make xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/home/fbrarda/petsc PETSC_ARCH=arch-opt all xxx=========================================================================xxx ================================================================================ Finishing configure run at Mon, 15 Feb 2021 15:24:47 +0100 ================================================================================