Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Sun, 17 Jan 2021 22:33:16 -0500 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-fc=0 --CFLAGS=-g --CXXFLAGS=-g --COPTFLAGS=" -O0" --CXXOPTFLAGS=" -O0" --with-ctable=0 --with-ssl=0 --with-batch=0 --with-cxx=mpicxx --with-mpiexec=jsrun --download-kokkos=1 --download-kokkos-kernels --with-cuda=1 --download-metis --download-parmetis --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack" --with-cc=mpicc --with-shared-libraries=1 --with-x=0 --with-64-bit-indices=0 --with-make-np=8 --with-debugging=0 PETSC_ARCH=arch-summit-opt-gnu-kokkos-omp --with-openmp=1 --with-threadsafety=1 --with-log=0 PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc Working directory: /gpfs/alpine/csc314/scratch/adams/petsc Machine platform: ('Linux', 'login1', '4.14.0-115.21.2.el7a.ppc64le', '#1 SMP Thu May 7 22:22:31 UTC 2020', 'ppc64le', 'ppc64le') Python version: 2.7.5 (default, Feb 26 2020, 09:25:01) [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)] ================================================================================ Environmental variables LMOD_FAMILY_MPI=spectrum-mpi XL_LINKER=/sw/summit/xalt/1.2.1/bin/ld __LMOD_REF_COUNT_MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-awz2q5b/gcc/6.4.0:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:1;/sw/summit/modulefiles/core:1 LMOD_SETTARG_FULL_SUPPORT=no PAMI_IBV_ADAPTER_AFFINITY=1 CUDA_DIR=/sw/summit/cuda/10.1.243 SHELL=/bin/bash LMOD_MPI_VERSION=10.3.1.2-20200121-awz2q5b HISTSIZE=100 OLCF_FAMILY_MPI=spectrum-mpi MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/share/man:/sw/summit/gcc/6.4.0/share/man:/sw/summit/cuda/10.1.243/doc/man:/sw/sources/hpss/man:/sw/summit/lmod/8.2.10/share/man:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man::/opt/puppetlabs/puppet/share/man XDG_RUNTIME_DIR=/run/user/62983 PYTHONPATH=/sw/summit/xalt/1.2.1/site:/sw/summit/xalt/1.2.1/libexec __LMOD_REF_COUNT_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1 LMOD_FAMILY_COMPILER_VERSION=6.4.0 __LMOD_REF_COUNT_CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43:1 __Init_Default_Modules=1 XDG_SESSION_ID=34079 LMOD_FAMILY_COMPILER=gcc OLCF_LMOD_ROOT=/sw/summit OMPI_FC=gfortran HOSTNAME=login1 JSM_JSRUN_NO_WARN_TOPOLOGY=1 DDT_HOME=/sw/summit/forge/20.0.1 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OMPI_MCA_io=romio321 __LMOD_REF_COUNT_MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/share/man:1;/sw/summit/gcc/6.4.0/share/man:1;/sw/summit/cuda/10.1.243/doc/man:1;/sw/sources/hpss/man:1;/sw/summit/lmod/8.2.10/share/man:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man:1;/opt/puppetlabs/puppet/share/man:1 OLCF_NETLIB_LAPACK_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm OLCF_CUDA_ROOT=/sw/summit/cuda/10.1.243 LESSOPEN=||/usr/bin/lesspipe.sh %s LSF_BINDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin _ModuleTable008_=ZmlsZXMvY29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvc3cvc3VtbWl0L21vZHVsZWZpbGVzL3NpdGUvbGludXgtcmhlbDctcHBjNjRsZS9Db3JlOi9zdy9zdW1taXQvbW9kdWxlZmlsZXMvY29yZSIsfQ== CPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/include:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include:/sw/summit/cuda/10.1.243/include USER=adams LSF_ENVDIR=/opt/ibm/spectrumcomputing/lsf/conf PAMI_ENABLE_STRIPING=0 PS1=\A\[\033[;1m\]\[\033[35m\]$(ret=$?; [ $ret -ne 0 ] && echo -n " $ret")\[\033[;0m\] \[\033[34m\]$(__git_ps1 '%s') \[\033[32m\]\w\[\033[0m\]\$ OLCF_SPECTRUM_MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb __LMOD_REF_COUNT_LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:1;/sw/summit/gcc/6.4.0/lib64:1;/sw/summit/cuda/10.1.243/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib:1 SHLVL=1 __LMOD_REF_COUNT_ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/share/aclocal:1 DISPLAY=localhost:17.0 OLCF_FAMILY_COMPILER=gcc PETSC_DIR=/ccs/home/adams/petsc OPAL_PREFIX=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb LMOD_FAMILY_MPI_VERSION=10.3.1.2-20200121 MODULESHOME=/sw/summit/lmod/8.2.10 XALT_ETC_DIR=/sw/summit/xalt/1.2.1/etc _ModuleTable007_=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 __LMOD_REF_COUNT_PKG_CONFIG_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/pkgconfig:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/pkgconfig:1 _ModuleTable001_=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 __LMOD_REF_COUNT_PYTHONPATH=/sw/summit/xalt/1.2.1/site:1;/sw/summit/xalt/1.2.1/libexec:1 LMOD_VERSION=8.2.10 PAMI_CUDA_AWARE_THRESH=320000 PKG_CONFIG_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/pkgconfig:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/pkgconfig BASH_ENV=/sw/summit/lmod/8.2.10/init/bash __LMOD_REF_COUNT_PATH=/sw/sources/lsf-tools/2.0/summit/bin:2;/sw/summit/xalt/1.2.1/bin:1;/sw/summit/forge/20.0.1/bin:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin:1;/sw/summit/gcc/6.4.0/bin:1;/sw/summit/cuda/10.1.243/bin:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin:1;/sw/sources/hpss/bin:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin:1;/opt/ibm/csm/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/opt/ibm/flightlog/bin:1;/opt/ibutils/bin:1;/opt/ibm/spectrum_mpi/jsm_pmix/bin:1;/opt/puppetlabs/bin:1;/usr/lpp/mmfs/bin:1 _=/ccs/home/adams/arch-summit-opt-gnu-kokkos-omp.py MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-awz2q5b/gcc/6.4.0:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:/sw/summit/modulefiles/core SSH_CONNECTION=160.91.202.152 42416 128.219.134.71 22 OMP_NUM_THREADS=1 OLCF_FAMILY_MPI_VERSION=10.3.1.2-20200121 AUTOGEN_PARALLEL=1 LMOD_MPI_NAME=spectrum-mpi _LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.1.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.18.2.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/gcc/6.4.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/spectrum-mpi/10.3.1.2-20200121.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/netlib-lapack/3.8.0.lua:/sw/summit/modulefiles/core/forge/20.0.1 OMPI_CXX=g++ __LMOD_REF_COUNT_LOADEDMODULES=hsi/5.0.2.p5:1;xalt/1.2.1:1;lsf-tools/2.0:1;darshan-runtime/3.1.7:1;DefApps:1;cmake/3.18.2:1;cuda/10.1.243:1;gcc/6.4.0:1;spectrum-mpi/10.3.1.2-20200121:1;netlib-lapack/3.8.0:1;forge/20.0.1:1 LMOD_DIR=/sw/summit/lmod/8.2.10/libexec GIT_PS1_SHOWDIRTYSTATE=1 PAMI_IBV_ENABLE_DCT=1 LMOD_PKG=/sw/summit/lmod/8.2.10 MODULEPATH_ROOT=/sw/summit/modulefiles HOME=/ccs/home/adams LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:/sw/summit/gcc/6.4.0/lib64:/sw/summit/cuda/10.1.243/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib LSF_SERVERDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc CUDAPATH=/sw/summit/cuda/10.1.243 LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib LMOD_SYSTEM_NAME=summit __LMOD_REF_COUNT__LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.1.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.18.2.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/gcc/6.4.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/spectrum-mpi/10.3.1.2-20200121.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/netlib-lapack/3.8.0.lua:1;/sw/summit/modulefiles/core/forge/20.0.1:1 GIT_PS1_SHOWUPSTREAM=auto CUDA_TOOLKIT_ROOT_DIR=/sw/summit/cuda/10.1.243 _ModuleTable_Sz_=8 OLCF_MODULEPATH_ROOT=/sw/summit/modulefiles OMPI_CC=gcc __LMOD_REF_COUNT_CPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/include:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include:1;/sw/summit/cuda/10.1.243/include:1 LMOD_CMD=/sw/summit/lmod/8.2.10/libexec/lmod PROJWORK=/gpfs/alpine/proj-shared _ModuleTable005_=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 BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } XLSF_UIDDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib/uid OLCF_DARSHAN_RUNTIME_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OLCF_GCC_ROOT=/sw/summit/gcc/6.4.0 SSH_TTY=/dev/pts/72 CVS_RSH=ssh _ModuleTable006_=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 OLDPWD=/gpfs/alpine/csc314/scratch/adams PAMI_IBV_ENABLE_OOO_AR=1 OMPI_LD_PRELOAD_PREPEND=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/libdarshan.so LMOD_SYSTEM_DEFAULT_MODULES=DefApps SSH_CLIENT=160.91.202.152 42416 22 LOGNAME=adams ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/share/aclocal PATH=/sw/sources/lsf-tools/2.0/summit/bin:/sw/summit/xalt/1.2.1/bin:/sw/summit/forge/20.0.1/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin:/sw/summit/gcc/6.4.0/bin:/sw/summit/cuda/10.1.243/bin:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin:/sw/sources/hpss/bin:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin:/opt/ibm/csm/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibm/flightlog/bin:/opt/ibutils/bin:/opt/ibm/spectrum_mpi/jsm_pmix/bin:/opt/puppetlabs/bin:/usr/lpp/mmfs/bin TERM=xterm-256color CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OPAL_LIBDIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib MEMBERWORK=/gpfs/alpine/scratch/adams LSF_LIBDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib OLCF_CMAKE_ROOT=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna _ModuleTable003_=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 XALT_OLCF=1 __LMOD_Priority_PATH=/sw/sources/lsf-tools/2.0/summit/bin:-9999;/sw/summit/xalt/1.2.1/bin:-9999 OMPI_DIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb OLCF_FAMILY_COMPILER_VERSION=6.4.0 BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@") } PAMI_IBV_QP_SERVICE_LEVEL=8 MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb WORLDWORK=/gpfs/alpine/world-shared LMOD_sys=Linux LOADEDMODULES=hsi/5.0.2.p5:xalt/1.2.1:lsf-tools/2.0:darshan-runtime/3.1.7:DefApps:cmake/3.18.2:cuda/10.1.243:gcc/6.4.0:spectrum-mpi/10.3.1.2-20200121:netlib-lapack/3.8.0:forge/20.0.1 LMOD_ROOT=/sw/summit/lmod HISTCONTROL=ignoredups PWD=/gpfs/alpine/csc314/scratch/adams/petsc _ModuleTable004_=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 BINARY_TYPE_HPC= OLCF_HSI_ROOT=/sw/sources/hpss Files in path provided by default path /sw/sources/lsf-tools/2.0/summit/bin: bsub bjob showusage test_bsub /sw/summit/xalt/1.2.1/bin: jsrun ld xalt_helper_functions.sh /sw/summit/forge/20.0.1/bin: ddt-debugger-mps ddt ddt-debugger allinea-client ddt-mpirun forge-probe forge make-profiler-libraries ddt-debugger-ll map ddt-client /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin: shmemrun profile2mat.pl oshrun oshmem_info orterun orted orte-server orte-info orte-clean ompi_info ompi-server ompi-clean mpitool mpirun mpijob mpiexec jumpshot get_nl_setting efix alias.pl aggregate_profile.pl stock shmemfort shmemcxx shmemcc shmemc++ shmemCC oshfort oshcxx oshcc oshc++ oshCC ortecc opal_wrapper mpixlf mpixlc mpixlC mpipgifort mpipgicc mpipgic++ mpifort mpif90 mpif77 mpicxx mpicc mpic++ mpiCC mpip-jsrun /sw/summit/gcc/6.4.0/bin: g++ c++ powerpc64le-none-linux-gnu-g++ powerpc64le-none-linux-gnu-c++ gfortran powerpc64le-none-linux-gnu-gfortran gcj powerpc64le-none-linux-gnu-gcj jcf-dump gcov gcov-tool gcov-dump cpp gcc powerpc64le-none-linux-gnu-gcc-6.4.0 gcc-ar powerpc64le-none-linux-gnu-gcc powerpc64le-none-linux-gnu-gcc-ar gcc-nm powerpc64le-none-linux-gnu-gcc-nm gcc-ranlib powerpc64le-none-linux-gnu-gcc-ranlib jv-convert gij grmic grmiregistry gcj-dbtool gappletviewer gjarsigner gkeytool gjar gcjh gjavah gnative2ascii gorbd grmid gserialver gtnameserv gc-analyze rebuild-gcj-db aot-compile /sw/summit/cuda/10.1.243/bin: cuobjdump cuda-gdb cuda-gdbserver gpu-library-advisor cuda-memcheck nsight nsight_ee_plugins_manage.sh nv-nsight-cu-cli bin2c crt cudafe++ fatbinary nvcc nvcc.profile nvlink ptxas nvdisasm nvprof nvprune computeprof nvvp cuda-install-samples-10.1.sh /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin: ccmake cmake ctest cpack /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin: darshan-mk-log-dirs.pl darshan-gen-cc.pl darshan-gen-cxx.pl darshan-gen-fortran.pl darshan-config /sw/sources/hpss/bin: htar 5.0.2.9 6.0.0.11 5.0.2.11 hsi 6.2.0.1 6.3 6.3.1 TA_Status test_TA /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc: esub esub.poe pim lsf_daemons rla elim.jsdl named esub.tv esub.openmp esub.mvapich esub.dprov sbatchd esub.bproc esub.openmpi esub.oldtvpoe esub.mpichp4 elim.frequency esub.tvlammpi esub.oldpoe lim esub.ls_dyna esub.tvmpich_gm esub.fluent nios esub.gold esub.mpich_gm esub.pvm esub.intelmpi esub.mpich_mx eauth.krb5 res tmp.elim.sa eauth esub.tvpoe mesub esub.mpich2 melim esub.lammpi /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin: brsvjob lspasswd bmgroup bpost btop bclusters lsplace bjdepinfo lsreghost brsvs bparams bgadd lsrun lsload breconfig lsfrestart bconf bmod bsub lsunlockhost bmodify bread bacct lsfrsv lsgrun bslots bapp bjobs lsmail lsfstartup lsmake4 lslockhost lsfshutdown bpeek lsrun.sh lslogin bimages bchkpnt bwait lsfhadoop.sh bsla brsvmod lsrtasks blimits busers bresources bqueues brequeue bmg lsrcp lseligible lshosts lsloadadj breboot lsacct lsclusters bugroup lsltasks lsadmin bstatus bgbroker bgdel bentags lsportcheck brsvsub lsf-start-spark.sh bqc bhpart lsf-spark-shell.sh lsmakerm lsf-spark-submit.sh brestart bswitch bjgroup lsreconfig lammpirun_wrapper lsf-stop-spark.sh badmin bbot bstop lsinfo brun bhist bhosts bgmod brsvadd bkill brlainfo brsvdel xagent bresize bmig lsmon lsid bgpinfo lsmake bresume blaunch lsacctmrg /opt/ibm/csm/bin: csm_bb_vg_create csm_node_find_job csm_cluster_query_state csm_allocation_create csm_ib_cable_update csm_allocation_query_active_all csm_bb_lv_delete csm_allocation_update_state csm_switch_attributes_update csm_soft_failure_recovery csm_diag_run_query csm_allocation_step_begin csm_bb_vg_delete csm_node_attributes_query_history csm_allocation_query_details csm_node_attributes_query_details csm_diag_run_query_details csm_ras_event_create csm_diag_run_begin csm_node_resources_query_all csm_allocation_query csm_ras_event_query_allocation csm_switch_attributes_query csm_node_attributes_query csm_switch_attributes_query_details csm_infrastructure_health_check csm_node_attributes_update csm_ras_msg_type_create csm_ras_msg_type_delete csm_ras_msg_type_query csm_node_query_state_history csm_switch_attributes_query_history csm_allocation_step_query_active_all csm_bb_lv_create csm_node_resources_query csm_allocation_delete csm_ras_event_query csm_allocation_resources_query csm_diag_result_create csm_node_delete csm_ras_msg_type_update csm_bb_vg_query csm_ib_cable_query_history csm_diag_run_end csm_allocation_step_query csm_allocation_step_query_details csm_allocation_update_history csm_allocation_step_end csm_ib_cable_query csm_jsrun_cmd csm_bb_lv_query /usr/local/bin: /usr/bin: sview strigger sstat sshare srun sreport squeue sprio smap sinfo sgather sdiag scontrol scancel sbcast sbatch sattach salloc sacctmgr sacct jobsub jobstat ctags diffstat rpmsign swig ccache-swig ocs cscope-indexer cscope doxygen unwrapdiff splitdiff rediff recountdiff lsdiff interdiff grepdiff flipdiff fixcvsdiff filterdiff espdiff editdiff dehtmldiff combinediff yacc byacc indent rlog rcsmerge rcsfreeze rcsdiff rcsclean rcs merge ident co ci svnversion svnsync svnserve svnrdump svnlook svndumpfilter svnadmin svn intltoolize intltool-update intltool-prepare intltool-merge intltool-extract gettextize autopoint stap-report stapsh staprun stap-merge stap-prep stap screen rhn_register whiptail subscription-manager rhsmcertd rhsm-debug rct consolehelper pyinotify easy_install-2.7 easy_install snmpwalk snmpvacm snmpusm snmptrap snmptranslate snmptls snmptest snmptable snmpstatus snmpset snmpnetstat snmpinform snmpgetnext snmpget snmpdf snmpdelta snmpbulkwalk snmpbulkget encode_keychange chardetect atopsar atopd atopconvert atop abrt-dump-oops abrt-action-save-kernel-data abrt-action-analyze-oops abrt-action-trim-files abrt-action-perform-ccpp-analysis abrt-action-list-dsos abrt-action-install-debuginfo abrt-action-generate-core-backtrace abrt-action-generate-backtrace abrt-action-analyze-vulnerability abrt-action-analyze-core abrt-action-analyze-ccpp-local abrt-action-analyze-c abrt-action-analyze-backtrace abrt-watch-log abrt-handle-upload abrt-action-save-package-data abrt-action-notify abrt-action-analyze-xorg reporter-ureport reporter-rhtsupport libtar satyr git git-receive-pack git-upload-archive git-upload-pack git-shell lex tset pk12util as lpr.cups speaker-test manpath hwloc-gather-topology hwloc-calc rev snmpconf sctp_darn trust nm fc-pattern ucs2any zforce groups gunzip tracepath rdma_xclient unalias db_upgrade dbus-uuidgen uuidgen uname df fc-match evim schemagen sessreg rdoc gdbus-codegen perl perl5.16.3 egrep mlxcables recode-sr-latin pkcheck GET rvim addr2line gsdj500 rpmbuild amixer unexpand ypchsh yppasswd ypchfn install cancel.cups msggrep mwm gcc-nm remunge ibgenperm thumbpdf nsenter clean-binary-files httpcfg mlnx_dump_parser ghci autoexpect ntpstat texluac dtestsrq lz4cat pkttyagent python2 pkla-admin-identities hpc tail size fc-query mkluatexfontdb dbus-cleanup-sockets nisdomainname ldapurl xsd startx crash mcdiff make gslp mktexfmt pmafm xdg-desktop-icon ldappasswd csh printenv vncconfig wqdump_ext gendiff mst_cable X mstvpd zmore db_hotbackup signver systemctl amsvis tbl xmessage servertool sn embedspu rview nohup grops geoipupdate xfd rm infotocap pwscore eu-objdump mysql mailq.postfix ptx systemd-loginctl mstop rxe_cfg ar ccrewrite diff-jars python pmsocks migspeed xmbind objcopy alias dos2unix ca-legacy tclsh ofed_rpm_info hwloc-assembler-remote vimtutor lprm pygtk-demo jjs prtstat seq col pdcp eu-strip ib_acme resourcedump dirname fc-cache-64 lesskey date basename grep geoiplookup6 ssh-copy-id xterm svcutil libpng-config dvilualatex db_load systemd-notify dracut texconfig haddock xrandr umount xdg-mime prlimit ucx_info infokey pstree.x11 mono-test-install write geqn xdg-screensaver glib-mkenums sudoedit mst ghc-pkg-7.6.3 wall dgawk ibv_polldcinfo ppc64le-redhat-linux-gcc gcc xzcat simpdftex cvsbug 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bunzip2 zcat xzless lscpu xzmore udaddy alsamixer find2perl dtestcm iconv rpm2cpio desktop-file-edit ps2pdf13 ldapexop hwloc-assembler rpmquery ibv_umr chown pdsh gcc-ar pdb2mdb unshare db_replicate nsupdate cpio xmvn-builddep comm dbus-monitor automake-1.13 automake eu-stack runghc-7.6.3 xgettext chsh eqn gdb lualatex cpupower build-jar-repository gacutil2 gawk rftp kpsewhere c99 nvidia-smi reset xdg-open zip split mlx_fpga_ext catchsegv ghc-7.6.3 keytool aria_chk mlxreg mstregdump alsaucm mlxlink rename chktrust true db_recover mktexlsr xpr skill otflist gfortran gtroff uil jvmjar zgrep elfedit xclipboard passwd prove eu-nm openssl su kibitz kpsestat pgrep printf gtbl ib_read_lat zipdetails gtar jarsigner mysql_find_rows fold gconf-merge-tree munge ln tty uuclient stat chfn find-jar wish pmdiff mkocp lchsh jconsole luit diff rpmdb gcore rsync fc-list dmesg libtool mkfontscale zsoelim mstmcra pod2usage xjc uptime dump2slvl.pl ldapwhoami testrb alsatplg setarch dbus-test-tool msgfmt alsa-delay gview texconfig-dialog ps2pdf14 cairo-sphinx sctp_test ps2epsi pmlogconf dwz amidi updmap-sys compile_et man cmp hostnamectl dd tmon vdir pldd sctp_status iceauth getfacl xrdb runhaskell-ghc udpong hwloc-distances sh db_stat ib_write_bw fmt fc-validate mcs ibv_cc_pingpong base64 ibv_devinfo ibv_xsrq_pingpong mlxreg_ext sqlite3 ps2ps2 dapltest tar head ps2pdf ri serialver script pstree msgcomm finger fallocate xzdec whatis gencat perlthanks perlbug xconsole xclock wsdl mlxtrace aclocal aclocal-1.13 red readlink unix2mac vim zegrep certutil hwloc-info xinput hwloc-distrib gzip ypcat localedef emacs pmlogsummary mlnx_interface_mgr.sh mysql_config gpgsplit zipinfo unzip updatedb idn systemd-run pwd mailx xzdiff db_dump185 wish8.5 ibv_devices ls mcedit iptables-xml db_dump unlz4 xdg-icon-resource arecord kernel-install otftobdf sqlmetal mysqlslap lp dbus-run-session xcursorgen mremote gsbj ldapadd unpigz pigz ed gss-client ibdiagm.sh m4 systemd-path kpsetool cal raw_ethernet_burst_lat mpi-selector lprsetup.sh rvi mono xrefresh zipsplit lp.cups batch mysqladmin ib_write_lat ldapcompare lprm.cups which msginit oldfind toe unlink lz4c ppc64le-redhat-linux-g++ c++ g++ ppc64le-redhat-linux-c++ montage ghostscript diff3 run-singularity dcgmi ibdiagpath pmfind free ghc-doc-index gpg-zip tcsh mconfig gpgv2 jdb pmpython allneeded icewmhint pinky rmid ebrowse lsblk xmlwf memhog ruby eu-findtextrel dislocate vncviewer less ibdev2netdev lsmem systemd-ask-password kpsereadlink lstopo-no-graphics bzcat python2-config cat ngettext gtk-query-immodules-3.0-64 apropos dimax_init icewmtray linux64 mstcongestion gdb-add-index who dviluatex xwud pstack ldapmodrdn bzgrep ucx_read_profile ionice bison rmic mktexpk ppc32 ranlib jhat slabtop x11perf systemd-cgtop wait catman xauth systemd-cat cancel bg env xkill pmlc numactl tnameserv pmdbg at convert Xvnc flint_ext strings soapsuds gstack msgcmp mkofm ssh-keygen sdiff HEAD ib_send_lat mkfontdir pgawk mysqlbinlog lppasswd dbus-daemon emacs-24.3 nroff locate setup-nsssysinit.sh igawk mlx_fs_dump gsdj tic lsinitrd weather gcov mono-boehm patch sudo ib_read_bw info dump2psl.pl xsetmode jrunscript kdumpctl lslocks gnroff shuf vmstat latex lslogins lua flex++ ssh-keyscan mlxtrace_ext msgattrib signtool rpmverify getent pmieconf ssh-agent xdg-desktop-menu ibdmchk ibnetsplit link gpg-agent pmlogcheck mlxlink_ext dbus-update-activation-environment bc nice raw mlxgearbox pmevent riostream wftopfa aserver mget_temp javadoc unxz ib_send_bw cpp desktop-file-install checksctp ucmatose gpg jsadebugd kpsewhich aria_read_log whereis systemd-tty-ask-password-agent pmerr mysqldump mstfwtrace java dvi2fax ibv_intf tzselect ibv_dctgt fmtutil gsoelim chmem ssh mstmtserver wsdl2 pmdate modutil vncserver pmval pmstore systemd-stdio-bridge paste xdg-email POST pod2text gacutil setpriv mandb lsattr tracepath6 xwd rdma_server desktop-file-validate mget_temp_ext nvidia-modprobe truncate numfmt mlnx_qos xbiff ppc64 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db_tuner systemd-inhibit [ ul snice rpmspec wc pod2html timed-read ibdiagnet lwp-download haddock-ghc-7.6.3 cmsutil updmap xvidtune last mlxprivhost top pmdumplog scriptreplay urlgrabber mstprivhost quotasync chgrp touch neqn fc-cat xmag msgen pack200 mount md5sum sudoreplay ps2ps gmake autom4te dircolors sha256sum pre-grohtml tsort getconf eu-elflint texlua db_log_verify fc-scan getopt pmie2col vi tload ibv_task_pingpong atrm gettext dc db_archive rdma_client xorg-x11-fonts-update-dirs fonttosfnt etex pf2afm aplaymidi mcookie jar nslookup setxkbmap ipmitool mlxdump hwloc-ls realpath ps2ascii ksh mlxmcg pdftex lpstat read dbus-send perldoc pkcs1-conv jdeps jstatd kpsexpand lwp-mirror mailq gnuplot kpsepath sort grep-changelog fgrep eu-readelf numastat shcomp sync flock timed-run cvt rpm composite autoheader setfacl db_printlog db_verify zcmp expand kpseaccess xmllint csplit bdftopcf ypdomainname soelim podselect kmod mono-heapviz alsaloop pmlogmv cut nvidia-bug-report.sh xzgrep pinentry lpstat.cups eu-ar dvired nettle-lfib-stream jinfo c89 mono-service runghc hwloc-bind gtf journalctl dbus-binding-tool check-binary-files hwloc-compress-dir icewm-set-gnomewm perf lpoptions msgconv printafm lpr tput keyctl ex bzless sha512sum withsctp ssh-add mesg findmnt gpgconf host agentxtrap umask raw_ethernet_fs_rate fipshmac gdbus mono-sgen-gdb.py gtester-report ibv_dcini lesspipe.sh mysqlshow piconv xload gtk-query-immodules-2.0-64 rmail.postfix dshbak localectl ipcs gex locale db_checkpoint i2c ldd gs arecordmidi msql2mysql autoupdate find chmod amsstat eu-addr2line rpcgen c++filt sndfile-resample hwloc-ps look ibdmtr genpmda curl-config pmprobe rksh pod2man xzcmp mlxfwreset zipgrep utmpdump more gdk-pixbuf-query-loaders-64 tc_wrap.py rmiregistry gpg-connect-agent xfontsel gsnd xkbcomp mprof-report mktextfm namei gsettings numademo mpi-selector-menu view icewmbg gcc-ranlib hesinfo cvs pckt_drop gnuplot-wx objdump mckey chrt unix-lpr.sh nail mlnx_qcn sss_ssh_knownhostsproxy ibv_uc_pingpong envsubst ghci-7.6.3 mkinitrd autoconf eu-unstrip mysqlcheck ipcrm pango-list lsns loginctl otfdump hwloc-diff mysql_waitpid uniq nvidia-xconfig gvimtutor setup-nsssysinit dvipdf wdctl tee killall cabal mcview ldapsearch sg flex runcon xzegrep gpg2 identify tac colcrt pmgenmap font2c nvidia-cuda-mps-server unpack200 readelf mlxi2c hexdump ssltap ibtopodiff cxpm msgcat update-mime-database singularity pmloglabel mono-sgen xcutsel irb pmjson login factor linux32 machinectl lsb_release vimx gio wget troff busctl lastb pmclient_fg native2ascii mono-service2 ibv_srq_pingpong mknod strace sexp-conv time gio-querymodules-64 Mail du dconf mlnx_get_vfs.pl domainname alsabat systemd-tmpfiles strace-log-merge ibv_rc_pingpong python2.7 sleep cmtime pwdx lpunlock eject mdevices_info ifnames sha224sum koi8rxterm sed getopts xlogo mlxuptime newaliases.postfix aseqnet systemd-firstboot xargs nettle-hash python2.7-config ncursesw5-config pcre-config qperf eu-make-debug-archive newaliases chage build-classpath mysqlaccess bzdiff isosize mstmwrite expr pwmake systemd-escape ncurses5-config xsetroot ibnlparse lstopo lessecho autoreconf gslj orbd clear gctags vncpasswd icewm-session atq mysqlimport rpmkeys xxd xhost ibv_asyncwatch wsgen sotruss mstflint run_perftest_loopback watch net-snmp-config msgfilter systemd-hwdb lastlog slogin gconftool-2 ldapdelete test mst_ib_add pkexec zipcloak rsyslog-recover-qi.pl pkaction unix2dos groff shred itrace xmlcatalog texhash systemd-machine-id-setup flint ibdiagnet_csv2xml.py iecset hwloc-annotate eps2eps autoscan grotty colrm bash glib-gettextize yes lz4 epstopdf gpgparsemail spax pr kill bzcmp mlxdump_ext ypmatch ibv_ud_pingpong aria_ftdump w logname ksh93 od xmodmap gpic pmlogsize p11-kit systemd-nspawn m17n-conv bzip2 timedatectl gresource rping infocmp unmunge nl users minit idlj xstdcmap msgmerge a2p csharp mft_uninstall.sh testgdbm gdk-pixbuf-thumbnailer hsc2hs lpq glib-genmarshal tailf quota hca_self_test.ofed id stty update-ca-trust mlxconfig setreg xzfgrep mv fipscheck ftp-rfc disco sqlsharp join xsetpointer ppc rlogin-cwd vimdiff lchfn tr chacl echo netstat texlinks pkla-check-authorization display strip xdg-settings rpdcp mstdump mkpasswd ping6 mlxphyburn pydoc ps2pdf12 jstat gpgv eu-strings pphs eu-elfcmp jobs zfgrep systemd-delta update-gtk-immodules glib-compile-resources gsettings-data-convert pic mlx_fpga dotlockfile gobject-query redhat_lsb_init Xorg import sftp emacsclient raw_ethernet_lat zless aria_pack msgexec false crlutil nvidia-cuda-mps-control oclock dnsdomainname javac pcp mail fwtrace xdpr awk tclsh8.5 gprof xkibitz my_print_defaults rcopy passmass pod2latex freetype-config bzip2recover bdftruncate x0vncserver yum abs2rel geoiplookup pcp2csv build-classpath-directory otfview znew mstmread aplay gvim nvvs ldapmodify nv-hostengine pl2pm javap pango-view ibsim sss_ssh_authorizedkeys hostid create-jar-links mcra zdiff pathchk /usr/local/sbin: /usr/sbin: rhnsd rhn_check spacewalk-channel rhnreg_ks rhn_register rhn-channel rhn-profile-sync subscription-manager userhelper pifconfig pethtool virt-what abrt-install-ccpp-hook abrt-dbus abrt-configuration abrtd abrt-server abrt-auto-reporting vgcfgrestore selabel_digest resize2fs luserdel bootlist fdisk thin_trim e4defrag tracepath pwhistory_helper mkdumprd mke2fs mkfs.ext2 mkfs.ext3 mkfs.ext4 badblocks mii-diag lpc lgroupmod rpc.statd lsdevinfo ibfindnodesusing.pl ifup alsa-info ibdiscover.pl load_policy rtcwake thin_repair usermod xfs_freeze lvs xfs_mdrestore plipconfig groupmod fsck.xfs lsvpd unix_update readprofile vgreduce losetup sshd-keygen update-alternatives rtas_event_decode selabel_lookup_best_match cracklib-check ntptime partx agetty pvdisplay vmcore-dmesg show_irq_affinity_hints.sh mlnx_net_rules kexec cracklib-unpacker lsprop thin_dump alternatives vendor_pre_uninstall.sh yppoll swaplabel lvchange blockdev ibdatacounts dracut useradd zdump alsa-info.sh lparstat ctrlaltdel smpdump ss swapoff swapon zic ipmaddr sys-unconfig sldd.sh iconvconfig.ppc64le iconvconfig tcsd ibhosts dmsetup lid chcpu cache_dump ibchecknode ibroute depmod vgremove pseries_platform nvme getpcaps ppp-watch lscfg cache_repair xfs_logprint postlock serv_config dumpe2fs nvram udevadm parted lsmod tc ntpdate sestatus fsck.minix rpcinfo pmc groupmems srp_daemon.sh iptables-restore pwunconv routel postqueue ls-vdev lpasswd sysctl e2freefrag dmstats capsh sendmail xfs_db pam_timestamp_check chpasswd lvdisplay hwstamp_ctl lnewusers zramctl yptest quotacheck ibdatacounters lvcreate mkdict vgmknodes iptables-save fixfiles set_irq_affinity_cpulist.sh lspci xtables-multi blkdeactivate postlog fsck lsslot xfs_quota rdisc update_flash_nv srp_daemon bridge saquery ibswitches addpart smpquery sss_cache clockdiff ntpdc ypset runlevel sssd build-locale-archive ntpd nfsidmap ipmievd atrun postcat odp_stat.sh lvconvert e2fsck fsck.ext2 fsck.ext3 fsck.ext4 rtstat ibprintrt.pl ifconfig era_dump xfs_growfs sminfo lvmsadc ibclearcounters dmfilemapd restorecon thin_ls ldattach grpconv vendor_post_uninstall.sh ntpq nvsetenv era_check connectx_port_config postconf delpart try-from vpdupdate era_restore avcstat munged snmpd mountstats mklost+found lvmsar ls-veth snmptrapd route ibsrpdm ibstat phc2sys lvresize cracklib-packer new-kernel-pkg fsck.nfs irqbalance logrotate xfs_rtcp rpc.rquotad ibcacheedit genhomedircon genl exportfs xfs_bmap grpck alsactl cache_writeback newusers selabel_partial_match makedumpfile show_gids mlnx_affinity ofed_uninstall.sh vgexport lvmdump nslcd pvresize partprobe set_irq_affinity_bynode.sh show_irq_affinity.sh dump_fts errinjct hardlink matchpathcon fdformat vgextend fsfreeze ofpathname pwck dhclient postdrop sendmail.postfix vgcfgbackup sulogin hack-coff lpc.cups xfs_info ypbind nameif nstat mkfs.cramfs sim_server activate_firmware nfsstat opensm gssproxy ibaddr mkfs.xfs groupadd halt osmtest lvmpolld lsmcode pvs lvremove start-statd debugfs setpci selinuxexeccon ibportstate rtmon ibcheckerrors vgimportclone e2label tune2fs rtas_dump postfix lnstat dump_mfts.sh thin_restore check_lft_balance.pl ibidsverify.pl cma_roce_tos selabel_lookup ip6tables-save rmmod cache_metadata_size nsm run_srp_daemon runuser xfs_metadump getcap sefcontext_compile ip iptables glibc_post_upgrade.ppc64le fsadm iblinkinfo.pl ibqueryerrors.pl setfiles sys_ident dhclient-script tracepath6 findfs getsebool cbq e2image blkdiscard uuserver ifcfg shutdown smtp-source install-info set_nodedesc.sh xfs_repair rsyslogd rpcdebug lvm mkhomedir_helper pvscan logsave pwconv unsquashfs ntp-keygen e2undo blkmapd vgscan osd_login umount.nfs ibcheckerrs rpc.nfsd iblinkinfo ibtracert cfdisk common_irq_affinity.sh modinfo sasldblistusers2 rtpr selinuxconlist wrapper blkid ibclearerrors lvmconf xqmstats vgsplit postsuper thin_check filefrag adduser redhat_lsb_trigger.ppc64le dump_lfts.sh drmgr cache_check crond pvchange vendstat setenforce addgnupghome tcpdmatch reboot vipw rpc.gssd cracklib-format perfquery sln pivot_root create-cracklib-dict quotaon groupdel ptp4l mkfs xfs_estimate dmeventd gss-server usernetctl show_counters xfs_ncheck vgchange grpunconv quotastats iptunnel dkms resizepart sysctl_perf_tuning xfs_mkfile repquota ip6tables-restore lusermod wipefs sshd ifdown cache_restore arp pvremove clock tickadj ldconfig selinuxdefcon lvreduce vigr quot vgdisplay lchage arping ibacm ibcheckportstate smparquery insmod addnote lvmetad ibprintca.pl switch_root hwclock kpartx ifstat sysinfo-snapshot.py setsebool edquota killall5 pidof anacron service sfdisk vgimport vgrename sm-notify lvmdiskscan lvscan selinuxenabled nologin atd accessdb ibcheckstate userdel lsvio ibnodes weak-modules quotaoff setquota era_invalidate automount xfs_copy sosreport consoletype phc_ctl safe_finger ppc64_cpu mlnx_eswitch_set uesensor rpc.mountd ls-vscsi ibsysstat modprobe ibstatus lgroupadd vgs rtacct pdata_tools telinit setup_mr_cache.sh poweroff lsof slattach visudo ibcheckportwidth update-pciids nscd update_flash smtp-sink mkswap sushell lvmconfig mktree xfs_admin ctstat lvrename ibmirror pam_tally2 chkconfig pam_console_apply xfs_io ib2ib_setup nfsdcltrack mksquashfs umount.nfs4 arpd rtas_ibm_get_vpd setcap rtas_dbg chroot ibqueryerrors grubby timemaster ibchecknet installkernel vgmerge rpc.idmapd create-munge-key routef mount.nfs pvmove ip6tables postmulti ibnetdiscover key.dns_resolver request-key alsabat-test.sh genhostid ibswportwatch.pl postmap init ibprintswitch.pl ether-wake ifenslave selinux_restorecon fstrim xfs_fsr packer lgroupdel vgcreate mount.nfs4 ethtool fsck.cramfs postalias lvextend vgconvert saslpasswd2 netreport mkfs.minix cma_roce_mode ibcheckwidth thin_metadata_size faillock thin_rmap ibcheckport pvck postkick ibrouters pvcreate tcpd vgck rpcbind ping6 opal-prd thin_delta mii-tool showmount ibccquery devlink set_irq_affinity.sh ibping nfsiostat mlnx_tune hvcsadmin unix_chkpwd getenforce luseradd set_poweron_time semodule convertquota applygnupgdefaults fuser ibccconfig compat_gid_gen /opt/ibm/flightlog/bin: decoder /opt/ibutils/bin: ibmsquit ibis dump2slvl.pl ibdiagpath IBMgtSim dump2psl.pl ibdmchk mkSimNodeDir ibdiagui ibdiagnet RunSimTest ibdmtr ibtopodiff ibdmsh ibnlparse ibmssh /opt/ibm/spectrum_mpi/jsm_pmix/bin: jsrun jswait jskill query_env export_slurm_env jsm_simulator js_task_info admin jsproxy jslist export_smpi_env jsm stock /opt/puppetlabs/bin: hiera facter puppet facter-ng.bat /usr/lpp/mmfs/bin: mmsklmconfig tsloadikm tssklmconfig mmkeyserv mmtrace mmsysmon.py mmnfsfuncs mmcesnfsmonitor mmjob mmdelcallback tsdf tschfileset tslsdisk tslspolicy tslsfs tsdelsnapshot tslsfileset tsnsdaccess tscrsnapshot tslspool tssnapdir tsedquota tsusercmd tslssnapshot tsstatus mmcrnsd tsgetscsiinfo mmqosnice mmsetquota mmdelfileset tsprpreemptabort cleanupkeystonedb mmsdrfsdef.Linux mmcesuserauthcrservice mmdumpfilocks tschdisk tsaddpdisk tsctl tskafkaauth tsdbfs tscheckquota tsfsctl tsrpldisk tschpdisk tsrecgroupserver tscmd tsreclaimspace tscrrecgroup tschstoragepool tsrestripefs tsdefragfs tsfileid tsdsh tsdeldisk tsquotaon tschfs tsdefedquota tsunmount tsdelpdisk tsressnapshot tscrvdisk tsquotaoff tsexpelnode tslsvdisk tscrfs tschmgr tslsrecgroup tslsrecoverygroupevents tsdelvdisk tsnsddiscover tsdefquotaoff tscrfileset tsdelfs tsdbvdisk tsdelfileset tsadddisk tscachectl tsdefquotaon tschcarrier tsauth tslsqos tslspdisk tsnsdrediscover tsremount tsdelrecgroup tschpool tsrepquota tschqos tschrecgroup tsfsck tsdiag tssbrff mmlsfileset mmexectsmcmd mmgetkafkaspecinfo mmfs mmchconfig ces.snap.py mmperfmon tsgetacl clstrwatchcallbacks mmcessmblsconfig tslsattr mmcesmonitord .links mmnfsgrace mmhelp-apolicy mmpmon mmcesnfsdelexport mmchpolicy gui.snap.py tspcache perfmon.snap.py mmsdrquerydef mmlsqos mmxargs tschattr mmclidecode clstrwatchconsumermanager mmfsctl mmpsnap mmccrnv perf.snap.py mmcespnfsip mmnfsnodeback tsimgrestore mmcesuserauthckservice mmchnodeclass pymmcesnfslsexport.py mmdelacl mmumount mmcrnodeclass mmsysmonc tspcacheevict mmexecvfile sshwrap mmgetifconf mmfs-ppc64-rh4 sysmon.snap.py mmimgrestore mmcesobjaccesslinkfset mmchecksubsys mmcesop tspmon mmdefedquota mmdelsnapshot mmreclaimspace mmsysmoncontrol tsspectrumdiscover mmyfields mmchnode mmrestorefs mmcallhome mmexportfs mmcesnfsloadexport tslspool34 mmnfsmonitor mmsnmpagentd30 tsfindinode mmfsfuncs.Linux mmdumpperfdata mmcesobjcrbase mmdsh objmetric_count.py mmauditmount mmcessmblsexport mmdevdiscover mmlsnode mmautoload mmcesnfscrexport mmchnsd mmfileid mmcesnfsfuncs mmcesrecovernode mmlsfs mmcollectdebugdata tseditacl tsbuhelper tslinkfileset tspreparedisk mmrpldisk mmdelnode mmceslog mmcrfsc mmcesblockfuncs mmgensymtable mmfsd mmnfsinstall mmdspmsg mmclone mmchfs mmlsdisk mmnfstakeover tsyselect mmnfsup mmcessmbcrexport tsaddrmap mmnetverify mmchpool msgqueue.snap.py mmcesobjlscfg tsrestorefileset mmbuildgpl mmsmbman tsfindname mmcesloadmonitor mmcesobjaccess mmaddcallback mmcesobjpolicyfuncs mmcessmbdelexport msgqueueDaemonManager core.snap.py tsgskkm mmauth mmedquota mmshutdown tsdbmemleakparse mmadquery mmsdrcli mmccr mmcesobjchstoragepolicy mmcesnfschcfg tswatchmonitor mmmigratefs mmputacl mmlscluster commonsnap.py mmcesservice mmadddisk tslsmgr tssbrindex mmafmlocal mmlsperfdata mmnfsuninstall mmcmi mmcesobjs3 tspcachescan mmlsnsd mmchcluster mmunmount mmnfsquorumloss mmcesnetdeladdress mmlsquota mmces pymmcesnfsfuncs.py tsputacl mmchqos tsprshowfence gpfsrunlevel mmimgbackup mmsdrrestore tsqosnice mmsdrserv mmmsgqueue mmcesmmcdelexport mmlinkfileset mmrestoreconfig mmdelnodeclass mmsmbfuncs lxtrace-4.14.0-115.21.2.el7a.ppc64le mmcesobjcfgman mmfixcfg mmcesnfslsexport tsdbmemleak mmaudit mmcesnfslscfg mmsmbsupportedoptions mmafmconfig mmlscallback mmlsmgr tsbackup mmcesminfuncs mmfsmount mmcesmmcchexport tsrestripefile kdump mmimportfs mmcesobjcrring mmnfs mmcommon mmcesnetmvaddress mmsnmpagentd mmcesobjfuncs gui.callhome.py tsbackup33 lxtrace mmsdrfsdef mmsmb mmobj tsprclear mmceshdfsfuncs mmcesnetworkmonitor tspcacheutil mmqos mmlspolicy mmrestripefs mmcessmbfuncs mmaddnode mmblock mmcrfs mmmount tsprreadres mmnsddiscover mmprotocoltrace mmglobfuncs tsprreadkeys mmnfsdown gpfs.snap object.snap.py mmcesnetaddaddress mmcesobjchcfg mmrsh mmcesobjmr mmeditacl auditConsumerManager mmlsconfig mmsync mmgetacl mmcesuserauthrmservice mmhealth tsdelacl mmremote mmpercentencode mmcloudfuncs daemonize mmcesnfschexport tsclone callhome.snap.py clstrwatchreplaymanager tsnetverify mmstartup mmcachectl mmgskkm mmdefragfs mmsnapdir tsapolicy mmrcmd mmexpelnode mmsdrquery ece.callhome.py mmchdisk mmcesnetdown mmlslicense mmrestripefile mmcrfileset mmnfscleanup kdump-4.14.0-115.21.2.el7a.ppc64le mmlogmsg mmcessmbexportacl mmchlicense mmsetrcmd tsclwatchrules mmdynamicmap tssetquota tsprreserve wftopics mmvaryonvg mmsnmpagentd10 mmbackupconfig mmdefquotaon mmlsattr mmcesfuncs mmfsadm mmcesmmccrexport runmmfs mmafmcmd ccrrestore mmunlinkfileset basicsnap.py mmafmhomeconfig auth.snap.py fab3.snap.py mmuserauth object.callhome.py mmlogsort mmdf mmcesobjcrstoragepolicy mmdefquotaoff mmtracectl mmdump tsprquery mmfsenv mmfsfuncs mmrepquota mmcesdr mmcesnode tslsquota mmdsm mmdelnsd mmnfsinit mmcrsnapshot mmlockf mmcesauthfuncs network.callhome.py mmglobfuncs.Linux tsprinquiry nfs.snap.py mmcesnetlsaddress mmapplypolicy mmdumpkthreads tswatchgpfsconduit mmcessmbchconfig perfmon.callhome.py mmauditpreunmount mmrcp scpwrap mmremotefs tsunlinkfileset mmcrcluster mmnfspreunmount mmcessmbchexport tsauditconsumer mmchattr mmdeldisk mmfsck smb.snap.py mmcesobjdepstoragepolicy mmcheckquota mmprodname mmdelfs mmcallhremote mmgetstate mmcesuserauthlsservice mmcesnetup mmremotecluster tsstarthelper mmcloudgateway mmgetconfdata tschpolicy mmchmgr mmcesnetchaddress mmsmbvalidoptions mmchfileset mmwatch tsprregister mmstartpolicy hadoop.snap.py mmquotaoff mmcesmonitor mmquotaon msgqueueservicesmonitormanager mmlspool mmlsmount mmccrmonitor mmbackup mmlsnodeclass mmrefresh mmnfsrecovernode mmpercentdecode wftopichk tspcachesnapdiff mmdiag mmlssnapshot mmcesobjlsstoragepolicy mmafmctl mmstatdcallout mmksh sshscpwrap ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:951) child config.utilities.macosFirewall 0.000005 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gdb...not found Checking for program /sw/summit/xalt/1.2.1/bin/gdb...not found Checking for program /sw/summit/forge/20.0.1/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/gdb...not found Checking for program /sw/summit/gcc/6.4.0/bin/gdb...not found Checking for program /sw/summit/cuda/10.1.243/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gdb...not found Checking for program /sw/sources/hpss/bin/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gdb...not found Checking for program /opt/ibm/csm/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.018659 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 14 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.003252 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000521 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/git...not found Checking for program /sw/summit/xalt/1.2.1/bin/git...not found Checking for program /sw/summit/forge/20.0.1/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/git...not found Checking for program /sw/summit/gcc/6.4.0/bin/git...not found Checking for program /sw/summit/cuda/10.1.243/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/git...not found Checking for program /sw/sources/hpss/bin/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/git...not found Checking for program /opt/ibm/csm/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.8.3.1 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hg...not found Checking for program /sw/summit/xalt/1.2.1/bin/hg...not found Checking for program /sw/summit/forge/20.0.1/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hg...not found Checking for program /sw/summit/gcc/6.4.0/bin/hg...not found Checking for program /sw/summit/cuda/10.1.243/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hg...not found Checking for program /sw/sources/hpss/bin/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hg...not found Checking for program /opt/ibm/csm/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /opt/ibm/flightlog/bin/hg...not found Checking for program /opt/ibutils/bin/hg...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hg...not found Checking for program /opt/puppetlabs/bin/hg...not found Checking for program /usr/lpp/mmfs/bin/hg...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.009079 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.14-146-gc8a6034 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: c8a6034effdc7533a74cd8b06a631e4a6bd6fb69 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2020-10-12 23:53:19 +0000 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: HEAD Defined "VERSION_GIT" to ""v3.14-146-gc8a6034"" Defined "VERSION_DATE_GIT" to ""2020-10-12 23:53:19 +0000"" Defined "VERSION_BRANCH_GIT" to ""HEAD"" child PETSc.options.petscclone 0.064387 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-summit-opt-gnu-kokkos-omp, ignoring environment: arch-summit-opt-gnu-kokkos-notpl-cuda ============================================================================================= No previous hashfile found Setting hashfile: arch-summit-opt-gnu-kokkos-omp/lib/petsc/conf/configure-hash Deleting configure hash file: arch-summit-opt-gnu-kokkos-omp/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-summit-opt-gnu-kokkos-omp/lib/petsc/conf/configure-hash child PETSc.options.arch 0.286590 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.002098 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000664 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000936 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1868) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1898) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1838) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1859) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:479) Initialize the compiler and linker flags Initialized CFLAGS to -g Initialized CFLAGS to -g Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPCCFLAGS to Initialized HIPCCFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to -g Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPCC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:654) Locate a functional C compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "CC" to "mpicc" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o Testing executable /tmp/petsc-4ZRdGX/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-4ZRdGX/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-4ZRdGX/config.setCompilers/conftest Executing: mpicc --version stdout: gcc (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:693) Locate a functional C preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:729) Locate a functional CUDA compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" ===== Checking compiler Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2019 NVIDIA Corporation Built on Sun_Jul_28_19:07:52_PDT_2019 Cuda compilation tools, release 10.1, V10.1.243 ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:769) Locate a functional CUDA preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAPP" to "nvcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include __global__ void testFunction() {return;}; Executing: nvcc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:803) Locate a functional HIP compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hipcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/hipcc...not found Checking for program /sw/summit/forge/20.0.1/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hipcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/hipcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hipcc...not found Checking for program /sw/sources/hpss/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hipcc...not found Checking for program /opt/ibm/csm/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/hipcc...not found Checking for program /opt/ibutils/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hipcc...not found Checking for program /opt/puppetlabs/bin/hipcc...not found Checking for program /usr/lpp/mmfs/bin/hipcc...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/forge/20.0.1/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/sources/hpss/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/csm/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibutils/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/puppetlabs/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/lpp/mmfs/bin/opt/rocm/bin/hipcc...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:839) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:860) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:886) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:973) Locate a functional Cxx compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicxx...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicxx...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicxx...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status ======== Checking running linked program ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o Testing executable /tmp/petsc-4ZRdGX/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-4ZRdGX/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-4ZRdGX/config.setCompilers/conftest Executing: mpicxx --version stdout: g++ (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1014) Locate a functional Cxx preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicxx...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicxx...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicxx...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicxx...found Defined make macro "CXXPP" to "mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicxx -E -I/tmp/petsc-4ZRdGX/config.setCompilers /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1113) Locate a functional Fortran compiler ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1307) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1406) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.2.1/bin/ar...not found Checking for program /sw/summit/forge/20.0.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ar...not found Checking for program /sw/summit/gcc/6.4.0/bin/ar...not found Checking for program /sw/summit/cuda/10.1.243/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ar...not found Checking for program /sw/sources/hpss/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /opt/ibm/csm/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.2.1/bin/ranlib...not found Checking for program /sw/summit/forge/20.0.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ranlib...not found Checking for program /sw/summit/gcc/6.4.0/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.243/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ranlib...not found Checking for program /sw/sources/hpss/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /opt/ibm/csm/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-4ZRdGX/config.setCompilers/libconf1.a /tmp/petsc-4ZRdGX/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-4ZRdGX/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.2.1/bin/ar...not found Checking for program /sw/summit/forge/20.0.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ar...not found Checking for program /sw/summit/gcc/6.4.0/bin/ar...not found Checking for program /sw/summit/cuda/10.1.243/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ar...not found Checking for program /sw/sources/hpss/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /opt/ibm/csm/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.2.1/bin/ranlib...not found Checking for program /sw/summit/forge/20.0.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ranlib...not found Checking for program /sw/summit/gcc/6.4.0/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.243/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ranlib...not found Checking for program /sw/sources/hpss/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /opt/ibm/csm/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-4ZRdGX/config.setCompilers/libconf1.a /tmp/petsc-4ZRdGX/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-4ZRdGX/config.setCompilers/libconf1.a ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -L/tmp/petsc-4ZRdGX/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1521) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Trying C compiler flag Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -shared -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o Valid C linker flag -shared ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/libconftest.so -shared -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -L/tmp/petsc-4ZRdGX/config.setCompilers -lconftest Using shared linker mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1250) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/libconftest.so -shared -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying CUDA for PIC code without any compiler flag Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/libconftest.so -shared -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o Accepted CUDA PIC code without compiler flag ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1633) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: mpicc -V Trying C linker flag -Wl,-rpath, Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V Trying CUDA linker flag -Wl,-rpath, Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o Valid CUDA linker flag -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1672) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/libconftest.so -shared -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1718) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.libraries -g /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g /tmp/petsc-4ZRdGX/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.1/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -shared -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -ldl Valid C linker flag -shared ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/libconftest.so -shared -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-4ZRdGX/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest -g /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-shared'] and library extension so ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1767) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with "-g" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CUDAC" with "nvcc" Substituting "CUDAFLAGS" with "" Substituting "CUDAPP" with "nvcc -E" Substituting "CUDAPPFLAGS" with "-Wno-deprecated-gpu-targets" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "-g" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 12.160111 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:31) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:47) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Executing: mpicc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.047276 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.001908 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:81) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (GCC) 6.4.0" Ignoring default options which were overridden using --CFLAGS -g Trying C compiler flag -O0 Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -g -O0 /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O0 Defined make macro "Cxx_VERSION" to "g++ (GCC) 6.4.0" Ignoring default options which were overridden using --CXXFLAGS -g Trying Cxx compiler flag -O0 Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -g -O0 /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O0 Defined make macro "CUDA_VERSION" to "nvcc: NVIDIA (R) Cuda compiler driver" Trying CUDA compiler flag -O Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -O -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : '-Wno-deprecated-gpu-targets': expected a number Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -O due to nonzero status from link Rejecting compiler flag -O due to nvcc fatal : '-Wno-deprecated-gpu-targets': expected a number PETSc Error: No output file produced Rejected CUDA compiler flag -O child config.compilerFlags 0.261109 Executing: mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1418) Check for -std=c99 or equivalent flag Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -g -O0 /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Executing: mpicc -V ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:411) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:126) Check for C inline keyword ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:422) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.compilers/conftest -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:220) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicxx -o /tmp/petsc-4ZRdGX/config.compilers/conftest -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.o /tmp/petsc-4ZRdGX/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1369) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 -MMD -MP /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -g -O0 -MMD -MP /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying CUDA compiler flag -MMD -MP Rejected CUDA compiler flag -MMD -MP Trying CUDA compiler flag -MMD Rejected CUDA compiler flag -MMD Trying CUDA compiler flag -xMMD Rejected CUDA compiler flag -xMMD Trying CUDA compiler flag -qmakedep=gcc Rejected CUDA compiler flag -qmakedep=gcc Trying CUDA compiler flag -MD Rejected CUDA compiler flag -MD Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -MMD -MP -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -MMD -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to nonzero status from link Rejecting compiler flag -MMD due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -xMMD -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'xMMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to nvcc fatal : Unknown option 'xMMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -qmakedep=gcc -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'qmakedep' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to nvcc fatal : Unknown option 'qmakedep' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -MD -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MD due to nonzero status from link Rejecting compiler flag -MD due to nvcc fatal : Unknown option 'MD' PETSc Error: No output file produced Executing: mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Executing: mpicc -V ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:469) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:441) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:141) Check for C++ inline keyword ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:553) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /tmp/petsc-4ZRdGX/config.compilers/conftest -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.o /tmp/petsc-4ZRdGX/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.compilers/confc.o: In function `asub()': /tmp/petsc-4ZRdGX/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-4ZRdGX/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-4ZRdGX/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-4ZRdGX/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-4ZRdGX/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-4ZRdGX/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-4ZRdGX/config.compilers/confc.o: In function `__static_initialization_and_destruction_0(int, int)': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/iostream:74: undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-4ZRdGX/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /tmp/petsc-4ZRdGX/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /tmp/petsc-4ZRdGX/config.compilers/confc.o:(.toc+0x10): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-4ZRdGX/config.compilers/confc.o: In function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/ext/new_allocator.h:110: undefined reference to `operator delete(void*)' /tmp/petsc-4ZRdGX/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-4ZRdGX/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.compilers/conftest' collect2: error: ld returned 1 exit status Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.compilers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /tmp/petsc-4ZRdGX/config.compilers/conftest -g -O0 /tmp/petsc-4ZRdGX/config.compilers/conftest.o /tmp/petsc-4ZRdGX/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler Executing: mpicxx -V ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1489) child config.compilers 3.644221 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.closure/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.utilities.closure/conftest.c: In function 'main': /tmp/petsc-4ZRdGX/config.utilities.closure/conftest.c:6:6: error: expected identifier or '(' before '^' token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.054336 child config.compilersFortran 0.000033 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.headers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.headers -g -O0 /tmp/petsc-4ZRdGX/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.headers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.headers -g -O0 /tmp/petsc-4ZRdGX/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.headers/conftest -g -O0 /tmp/petsc-4ZRdGX/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-4ZRdGX/config.headers/conftest to see if it can be run Executing: /tmp/petsc-4ZRdGX/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-4ZRdGX/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.headers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.headers -g -O0 /tmp/petsc-4ZRdGX/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.headers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.headers -g -O0 /tmp/petsc-4ZRdGX/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^compilation terminated.: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.headers/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.headers -g -O0 /tmp/petsc-4ZRdGX/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 4.213603 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.headers -g -O0 /tmp/petsc-4ZRdGX/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -g -O0 /tmp/petsc-4ZRdGX/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.utilities.cacheDetails/conftest -g -O0 /tmp/petsc-4ZRdGX/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-4ZRdGX/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-4ZRdGX/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-4ZRdGX/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.504538 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.types/conftest.c: In function 'main': /tmp/petsc-4ZRdGX/config.types/conftest.c:11:1: error: unknown type name '__int64' __int64 a;; ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.types/conftest -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.compilers -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: mpicxx -o /tmp/petsc-4ZRdGX/config.types/conftest -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.types /tmp/petsc-4ZRdGX/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 2.520383 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001045 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-4ZRdGX/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status Checking for functions [sin floor log10 pow] in library ['m'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" CheckMath: using math library ['libm.a'] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 5.534760 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "HAVE_THREADSAFETY" to "1" Defined "USE_LOG" to "0" Executing: mpicc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-4ZRdGX/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.libraries/conftest' collect2: error: ld returned 1 exit status Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-4ZRdGX/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.libraries/conftest' collect2: error: ld returned 1 exit status *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.879339 child config.atomics 0.000008 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^~~~~ /tmp/petsc-4ZRdGX/config.functions/conftest.c: In function 'main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:13:30: warning: implicit declaration of function 'sysinfo' [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: mpicxx -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.c: In function 'main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen fpresetsticky drand48 socket popen getrusage _mkdir time fpsetsticky stricmp] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.c:16:6: warning: conflicting types for built-in function 'snprintf' char snprintf(); ^~~~~~~~ /tmp/petsc-4ZRdGX/config.functions/conftest.c:19:6: warning: conflicting types for built-in function 'bzero' char bzero(); ^~~~~ /tmp/petsc-4ZRdGX/config.functions/conftest.c:35:6: warning: conflicting types for built-in function 'fork' char fork(); ^~~~ /tmp/petsc-4ZRdGX/config.functions/conftest.c:44:6: warning: conflicting types for built-in function 'strcasecmp' char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char fpresetsticky(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char fpsetsticky(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-4ZRdGX/config.functions/conftest.c:77: undefined reference to `_access' /tmp/petsc-4ZRdGX/config.functions/conftest.c:107: undefined reference to `_getcwd' /tmp/petsc-4ZRdGX/config.functions/conftest.c:113: undefined reference to `_pipe' /tmp/petsc-4ZRdGX/config.functions/conftest.c:131: undefined reference to `_lseek' /tmp/petsc-4ZRdGX/config.functions/conftest.c:143: undefined reference to `_sleep' /tmp/petsc-4ZRdGX/config.functions/conftest.c:185: undefined reference to `_snprintf' /tmp/petsc-4ZRdGX/config.functions/conftest.c:209: undefined reference to `sbreak' /tmp/petsc-4ZRdGX/config.functions/conftest.c:239: undefined reference to `_set_output_format' /tmp/petsc-4ZRdGX/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /tmp/petsc-4ZRdGX/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /tmp/petsc-4ZRdGX/config.functions/conftest.c:293: undefined reference to `_mkdir' /tmp/petsc-4ZRdGX/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /tmp/petsc-4ZRdGX/config.functions/conftest.c:311: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock dlerror] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.c:17:6: warning: conflicting types for built-in function 'bzero' char bzero(); ^~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_DLERROR" to "1" Checking for functions [fork getpagesize memalign gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'fork' char fork(); ^~~~ /tmp/petsc-4ZRdGX/config.functions/conftest.c:18:6: warning: conflicting types for built-in function 'strcasecmp' char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char memalign(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `_access' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [snprintf] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'snprintf' char snprintf(); ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `_getcwd' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [_pipe] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `_pipe' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [getwd] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `_lseek' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [sleep] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `_sleep' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [lseek] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `_snprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [sbreak] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `sbreak' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [getcwd] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `_set_output_format' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [fpresetsticky] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `fpresetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [_mkdir] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `_mkdir' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [fpsetsticky] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `fpsetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [stricmp] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.functions/conftest.o: In function `main': /tmp/petsc-4ZRdGX/config.functions/conftest.c:24: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.functions/conftest' collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.functions/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.functions/conftest -g -O0 /tmp/petsc-4ZRdGX/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 13.268359 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.001070 child config.utilities.fortranCommandLine 0.000010 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.functions -g -O0 /tmp/petsc-4ZRdGX/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -g -O0 /tmp/petsc-4ZRdGX/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -g -O0 /tmp/petsc-4ZRdGX/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -g -O0 /tmp/petsc-4ZRdGX/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.242212 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: mpicxx -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: mpicxx -o /tmp/petsc-4ZRdGX/config.utilities.missing/conftest -g -O0 /tmp/petsc-4ZRdGX/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 2.578844 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^compilation terminated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^compilation terminated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^compilation terminated.: child config.utilities.FPTrap 0.133738 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.utilities.missing -g -O0 /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest -g -O0 /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest.o: undefined reference to symbol '__fpclassify@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -g -O0 /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest -g -O0 /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -g -O0 /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest -g -O0 /tmp/petsc-4ZRdGX/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.libraries/conftest.c:4:22: fatal error: quadmath.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 1.337814 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mkdir...not found Checking for program /sw/summit/xalt/1.2.1/bin/mkdir...not found Checking for program /sw/summit/forge/20.0.1/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mkdir...not found Checking for program /sw/summit/gcc/6.4.0/bin/mkdir...not found Checking for program /sw/summit/cuda/10.1.243/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/mkdir...not found Checking for program /sw/sources/hpss/bin/mkdir...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mkdir...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mkdir...not found Checking for program /opt/ibm/csm/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /sw/sources/lsf-tools/2.0/summit/bin/autoreconf...not found Checking for program /sw/summit/xalt/1.2.1/bin/autoreconf...not found Checking for program /sw/summit/forge/20.0.1/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/autoreconf...not found Checking for program /sw/summit/gcc/6.4.0/bin/autoreconf...not found Checking for program /sw/summit/cuda/10.1.243/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/autoreconf...not found Checking for program /sw/sources/hpss/bin/autoreconf...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/autoreconf...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/autoreconf...not found Checking for program /opt/ibm/csm/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /sw/sources/lsf-tools/2.0/summit/bin/libtoolize...not found Checking for program /sw/summit/xalt/1.2.1/bin/libtoolize...not found Checking for program /sw/summit/forge/20.0.1/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/libtoolize...not found Checking for program /sw/summit/gcc/6.4.0/bin/libtoolize...not found Checking for program /sw/summit/cuda/10.1.243/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/libtoolize...not found Checking for program /sw/sources/hpss/bin/libtoolize...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/libtoolize...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/libtoolize...not found Checking for program /opt/ibm/csm/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /sw/sources/lsf-tools/2.0/summit/bin/sh...not found Checking for program /sw/summit/xalt/1.2.1/bin/sh...not found Checking for program /sw/summit/forge/20.0.1/bin/sh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/sh...not found Checking for program /sw/summit/gcc/6.4.0/bin/sh...not found Checking for program /sw/summit/cuda/10.1.243/bin/sh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/sh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/sh...not found Checking for program /sw/sources/hpss/bin/sh...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/sh...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/sh...not found Checking for program /opt/ibm/csm/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/sed...not found Checking for program /sw/summit/xalt/1.2.1/bin/sed...not found Checking for program /sw/summit/forge/20.0.1/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/sed...not found Checking for program /sw/summit/gcc/6.4.0/bin/sed...not found Checking for program /sw/summit/cuda/10.1.243/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/sed...not found Checking for program /sw/sources/hpss/bin/sed...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/sed...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/sed...not found Checking for program /opt/ibm/csm/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-4ZRdGX/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mv...not found Checking for program /sw/summit/xalt/1.2.1/bin/mv...not found Checking for program /sw/summit/forge/20.0.1/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mv...not found Checking for program /sw/summit/gcc/6.4.0/bin/mv...not found Checking for program /sw/summit/cuda/10.1.243/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/mv...not found Checking for program /sw/sources/hpss/bin/mv...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mv...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mv...not found Checking for program /opt/ibm/csm/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/cp...not found Checking for program /sw/summit/xalt/1.2.1/bin/cp...not found Checking for program /sw/summit/forge/20.0.1/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/cp...not found Checking for program /sw/summit/gcc/6.4.0/bin/cp...not found Checking for program /sw/summit/cuda/10.1.243/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/cp...not found Checking for program /sw/sources/hpss/bin/cp...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/cp...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/cp...not found Checking for program /opt/ibm/csm/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/grep...not found Checking for program /sw/summit/xalt/1.2.1/bin/grep...not found Checking for program /sw/summit/forge/20.0.1/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/grep...not found Checking for program /sw/summit/gcc/6.4.0/bin/grep...not found Checking for program /sw/summit/cuda/10.1.243/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/grep...not found Checking for program /sw/sources/hpss/bin/grep...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/grep...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/grep...not found Checking for program /opt/ibm/csm/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/rm...not found Checking for program /sw/summit/xalt/1.2.1/bin/rm...not found Checking for program /sw/summit/forge/20.0.1/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/rm...not found Checking for program /sw/summit/gcc/6.4.0/bin/rm...not found Checking for program /sw/summit/cuda/10.1.243/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/rm...not found Checking for program /sw/sources/hpss/bin/rm...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/rm...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/rm...not found Checking for program /opt/ibm/csm/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/diff...not found Checking for program /sw/summit/xalt/1.2.1/bin/diff...not found Checking for program /sw/summit/forge/20.0.1/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/diff...not found Checking for program /sw/summit/gcc/6.4.0/bin/diff...not found Checking for program /sw/summit/cuda/10.1.243/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/diff...not found Checking for program /sw/sources/hpss/bin/diff...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/diff...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/diff...not found Checking for program /opt/ibm/csm/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-4ZRdGX/config.programs/diff1" "/tmp/petsc-4ZRdGX/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of the specific search path Warning accessing /usr/ucb gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Warning accessing /usr/usb gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Defined make macro "PYTHON" to "/usr/bin/python" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/m4...not found Checking for program /sw/summit/xalt/1.2.1/bin/m4...not found Checking for program /sw/summit/forge/20.0.1/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/m4...not found Checking for program /sw/summit/gcc/6.4.0/bin/m4...not found Checking for program /sw/summit/cuda/10.1.243/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/m4...not found Checking for program /sw/sources/hpss/bin/m4...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/m4...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/m4...not found Checking for program /opt/ibm/csm/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 1.934686 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 3.82 Built for powerpc64le-redhat-linux-gnu Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gmake...not found Checking for program /sw/summit/xalt/1.2.1/bin/gmake...not found Checking for program /sw/summit/forge/20.0.1/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/gmake...not found Checking for program /sw/summit/gcc/6.4.0/bin/gmake...not found Checking for program /sw/summit/cuda/10.1.243/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gmake...not found Checking for program /sw/sources/hpss/bin/gmake...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gmake...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gmake...not found Checking for program /opt/ibm/csm/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/make...not found Checking for program /sw/summit/xalt/1.2.1/bin/make...not found Checking for program /sw/summit/forge/20.0.1/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/make...not found Checking for program /sw/summit/gcc/6.4.0/bin/make...not found Checking for program /sw/summit/cuda/10.1.243/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/make...not found Checking for program /sw/sources/hpss/bin/make...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/make...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/make...not found Checking for program /opt/ibm/csm/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= ***** WARNING: You have a version of GNU make older than 4.0. It will work, but may not support all the parallel testing options. You can install the latest GNU make with your package manager, such as brew or macports, or use the --download-make option to get the latest GNU make ***** ============================================================================================= ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 128 cores: using make_np = 59 using user-provided make_np = 8 Defined make macro "MAKE_NP" to "8" Defined make macro "MAKE_TEST_NP" to "49" Defined make macro "MAKE_LOAD" to "166.4" Defined make macro "NPMAX" to "128" child config.packages.make 0.017974 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001367 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.cuda(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.cuda(config/BuildSystem/config/packages/cuda.py:100) ================================================================================== Checking for a functional cuda Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "SYSTEMNVCC" to "/sw/summit/cuda/10.1.243/bin/nvcc" CUDA: DirPath not found.. skipping: /sw/summit/cuda/10.1.243/lib Checking for library in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a'] Contents: ['rpm', 'LICENSE', 'README', 'bin', 'compat', 'doc', 'extras', 'include', 'lib64', 'libnsight', 'libnvvp', 'nsightee_plugins', 'nvml', 'nvvm', 'samples', 'share', 'targets', 'tools', 'version.txt', 'nsight-systems', 'nsight-compute'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['/sw/summit/cuda/10.1.243/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -lstdc++ -ldl Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" Checking for optional headers [] in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/sw/summit/cuda/10.1.243/include'] Found header files [] in ['/sw/summit/cuda/10.1.243/include'] Checking for headers ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in ['/sw/summit/cuda/10.1.243/include'] Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in ['/sw/summit/cuda/10.1.243/include'] Checking for size of type: teststruct ===== Checking compiler Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking for size of type: teststruct ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking if sizeof(void*) in CUDA is the same as with regular compiler Checking for size of type: void * ===== Checking compiler Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.types/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.1/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "SYSTEMNVCC" to "/sw/summit/cuda/10.1.243/bin/nvcc" Checking for program /sw/summit/cuda/10.1.243/extras/demo_suite/deviceQuery...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/deviceQuery...not found Unable to find programs ['deviceQuery'] providing listing of the specific search path Warning accessing /sw/summit/cuda/10.1.243/extras/demo_suite gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Defined "HAVE_CUDA" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/sw/summit/cuda/10.1.243/include /tmp/petsc-4ZRdGX/config.packages.cuda/conftest.c For cuda need 7.5 <= 10.1 <= ============================================================================================= TESTING: checkVersion from config.packages.cuda(config/BuildSystem/config/package.py:1017) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/sw/summit/cuda/10.1.243/include /tmp/petsc-4ZRdGX/config.packages.cuda/conftest.c For cuda need 7.5 <= 10.1 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.cuda(config/BuildSystem/config/package.py:949) By default we don't care about checking if the library is shared child config.packages.cuda 2.475624 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.001448 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.007673 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:695) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['mpi.h'] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.cuda /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in [] ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:556) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c:4:25: error: 'I_MPI_VERSION' undeclared here (not in a function) const char *mpich_ver = I_MPI_VERSION; ^~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c:4:17: error: 'I_MPI_NUMVERSION' undeclared here (not in a function) int mpich_ver = I_MPI_NUMVERSION; ^~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c:4:17: error: 'MVAPICH2_NUMVERSION' undeclared here (not in a function) int mpich_ver = MVAPICH2_NUMVERSION; ^~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c:4:17: error: 'MPICH_NUMVERSION' undeclared here (not in a function) int mpich_ver = MPICH_NUMVERSION; ^~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.MPI /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "10" Defined "HAVE_OMPI_MINOR_VERSION" to "03" Defined "HAVE_OMPI_RELEASE_VERSION" to "01" ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:331) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c:6:94: warning: initialization makes pointer from integer without a cast [-Wint-conversion] int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; ^ /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c:6:94: note: (near initialization for 'old_types[1]') Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:376) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } Defined "HAVE_MPI_GPU_AWARE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:176) Checking for location of mpiexec Checking for program /sw/sources/lsf-tools/2.0/summit/bin/jsrun...not found Checking for program /sw/summit/xalt/1.2.1/bin/jsrun...found Defined make macro "MPIEXEC" to "jsrun" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/jsrun...not found Checking for program /sw/summit/xalt/1.2.1/bin/jsrun...found Defined make macro "MPIEXECEXECUTABLE" to "/sw/summit/xalt/1.2.1/bin/jsrun" Running Executable with threads to time it out at 60 Executing: jsrun -n 1 printenv Unable to run jsrun with option "-n 1 printenv" This could be ok, some MPI implementations such as SGI produce a non-zero status with non-MPI programs Error: It is only possible to use js commands within a job allocation unless CSM is running 01-17-2021 22:34:15:883 34319 main: Error initializing RM connection. Exiting. Defined make macro "MPIEXEC" to "jsrun" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/socketfilterfw...not found Unable to find programs ['socketfilterfw'] providing listing of the specific search path Warning accessing /usr/libexec/ApplicationFirewall gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hostname...not found Checking for program /sw/summit/xalt/1.2.1/bin/hostname...not found Checking for program /sw/summit/forge/20.0.1/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hostname...not found Checking for program /sw/summit/gcc/6.4.0/bin/hostname...not found Checking for program /sw/summit/cuda/10.1.243/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hostname...not found Checking for program /sw/sources/hpss/bin/hostname...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hostname...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hostname...not found Checking for program /opt/ibm/csm/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: login1 Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ping...not found Checking for program /sw/summit/xalt/1.2.1/bin/ping...not found Checking for program /sw/summit/forge/20.0.1/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ping...not found Checking for program /sw/summit/gcc/6.4.0/bin/ping...not found Checking for program /sw/summit/cuda/10.1.243/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ping...not found Checking for program /sw/sources/hpss/bin/ping...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ping...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ping...not found Checking for program /opt/ibm/csm/bin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/bin/ping...found Defined make macro "PING" to "ping" Executing: uname -s stdout: Linux Running Executable with threads to time it out at 60 Executing: ping -c 2 login1 Exception: while running ping skipping ping check Checking for program /sw/sources/lsf-tools/2.0/summit/bin/host...not found Checking for program /sw/summit/xalt/1.2.1/bin/host...not found Checking for program /sw/summit/forge/20.0.1/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/host...not found Checking for program /sw/summit/gcc/6.4.0/bin/host...not found Checking for program /sw/summit/cuda/10.1.243/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/host...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/host...not found Checking for program /sw/sources/hpss/bin/host...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/host...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/host...not found Checking for program /opt/ibm/csm/bin/host...not found Checking for program /usr/local/bin/host...not found Checking for program /usr/bin/host...found Defined make macro "HOST" to "host" Running Executable with threads to time it out at 60 Executing: host login1 stdout: Host login1 not found: 3(NXDOMAIN) Exception: while running host skipping host check Checking for program /usr/sbin/traceroute...not found Checking for program /sw/sources/lsf-tools/2.0/summit/bin/traceroute...not found Checking for program /sw/summit/xalt/1.2.1/bin/traceroute...not found Checking for program /sw/summit/forge/20.0.1/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/traceroute...not found Checking for program /sw/summit/gcc/6.4.0/bin/traceroute...not found Checking for program /sw/summit/cuda/10.1.243/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/traceroute...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/traceroute...not found Checking for program /sw/sources/hpss/bin/traceroute...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/traceroute...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/traceroute...not found Checking for program /opt/ibm/csm/bin/traceroute...not found Checking for program /usr/local/bin/traceroute...not found Checking for program /usr/bin/traceroute...not found Checking for program /usr/local/sbin/traceroute...not found Checking for program /usr/sbin/traceroute...not found Checking for program /opt/ibm/flightlog/bin/traceroute...not found Checking for program /opt/ibutils/bin/traceroute...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/traceroute...not found Checking for program /opt/puppetlabs/bin/traceroute...not found Checking for program /usr/lpp/mmfs/bin/traceroute...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/traceroute...not found Unable to find programs ['traceroute'] providing listing of the specific search path Warning accessing /usr/sbin gives errors: cannot concatenate 'str' and 'builtin_function_or_method' objects ============================================================================================= ***** WARNING: mpiexec may not work on your system due to network issues. Perhaps you have VPN running whose network settings may not work with mpiexec or your network is misconfigured ============================================================================================= ============================================================================================= ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-4ZRdGX/config.packages.MPI/conftest to see if it can be run Executing: jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest ERROR while running executable: Could not execute "['jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest']": Error: It is only possible to use js commands within a job allocation unless CSM is running 01-17-2021 22:34:16:818 34512 main: Error initializing RM connection. Exiting. ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:423) Checking for MPI Datatype handles ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-4ZRdGX/config.packages.MPI/conftest to see if it can be run Executing: jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest ERROR while running executable: Could not execute "['jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest']": Error: It is only possible to use js commands within a job allocation unless CSM is running 01-17-2021 22:34:17:987 34752 main: Error initializing RM connection. Exiting. ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-4ZRdGX/config.packages.MPI/conftest to see if it can be run Executing: jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest ERROR while running executable: Could not execute "['jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest']": Error: It is only possible to use js commands within a job allocation unless CSM is running 01-17-2021 22:34:19:151 34981 main: Error initializing RM connection. Exiting. ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-4ZRdGX/config.packages.MPI/conftest to see if it can be run Executing: jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest ERROR while running executable: Could not execute "['jsrun -n 1 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest']": Error: It is only possible to use js commands within a job allocation unless CSM is running 01-17-2021 22:34:20:277 35217 main: Error initializing RM connection. Exiting. ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:484) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-4ZRdGX/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.libraries/conftest' collect2: error: ld returned 1 exit status SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:494) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: mpicxx -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:510) Make sure fortran include [mpif.h] and library symbols are found ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:532) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:636) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS Executing: mpicc -show stdout: gcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm compilers: Checking arg gcc compilers: Checking arg -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include compilers: Found include option: -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include Executing: nvcc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -std=c++14 -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -Wno-deprecated-gpu-targets /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added CUDA compiler flag -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include compilers: Checking arg -pthread compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib compilers: Checking arg -lmpiprofilesupport compilers: Checking arg -lmpi_ibm ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:670) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': /tmp/petsc-4ZRdGX/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.libraries/conftest' collect2: error: ld returned 1 exit status Checking for functions [MPIX_Ibarrier] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.libraries/conftest.o: In function `_check_MPIX_Ibarrier': /tmp/petsc-4ZRdGX/config.libraries/conftest.c:5: undefined reference to `MPIX_Ibarrier' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.libraries/conftest' collect2: error: ld returned 1 exit status ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1017) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.MPI /tmp/petsc-4ZRdGX/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:949) By default we don't care about checking if the library is shared child config.packages.MPI 15.075553 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001536 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.001347 ============================================================================================= TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:891) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.MPI /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^compilation terminated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include'] Found header files [] in ['/usr/local/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/usr/local/include /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^compilation terminated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include'] Found header files [] in ['/usr/local/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/usr/local/include /tmp/petsc-4ZRdGX/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" # 1 "/tmp/petsc-4ZRdGX/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 # 1 "/tmp/petsc-4ZRdGX/config.headers/conffix.h" 1 # 3 "/tmp/petsc-4ZRdGX/config.headers/conftest.c" 2 stderr: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-4ZRdGX/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^compilation terminated.: VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Executing: uname -s stdout: Linux ============================================================================================= It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure ============================================================================================= child config.packages.valgrind 0.145286 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.001411 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001418 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.001335 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.000226 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.001351 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.001339 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.001194 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.001192 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.001192 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.001336 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.001336 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.001194 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001640 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.001242 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.001337 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.001333 Checking for program /sw/sources/lsf-tools/2.0/summit/bin/lgrind...not found Checking for program /sw/summit/xalt/1.2.1/bin/lgrind...not found Checking for program /sw/summit/forge/20.0.1/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/lgrind...not found Checking for program /sw/summit/gcc/6.4.0/bin/lgrind...not found Checking for program /sw/summit/cuda/10.1.243/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/lgrind...not found Checking for program /sw/sources/hpss/bin/lgrind...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/lgrind...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/lgrind...not found Checking for program /opt/ibm/csm/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /usr/local/sbin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /opt/ibm/flightlog/bin/lgrind...not found Checking for program /opt/ibutils/bin/lgrind...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/lgrind...not found Checking for program /opt/puppetlabs/bin/lgrind...not found Checking for program /usr/lpp/mmfs/bin/lgrind...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.001369 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.001216 Looking for default Gmsh executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gmsh...not found Checking for program /sw/summit/xalt/1.2.1/bin/gmsh...not found Checking for program /sw/summit/forge/20.0.1/bin/gmsh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/gmsh...not found Checking for program /sw/summit/gcc/6.4.0/bin/gmsh...not found Checking for program /sw/summit/cuda/10.1.243/bin/gmsh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/gmsh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gmsh...not found Checking for program /sw/sources/hpss/bin/gmsh...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gmsh...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gmsh...not found Checking for program /opt/ibm/csm/bin/gmsh...not found Checking for program /usr/local/bin/gmsh...not found Checking for program /usr/bin/gmsh...not found Checking for program /usr/local/sbin/gmsh...not found Checking for program /usr/sbin/gmsh...not found Checking for program /opt/ibm/flightlog/bin/gmsh...not found Checking for program /opt/ibutils/bin/gmsh...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/gmsh...not found Checking for program /opt/puppetlabs/bin/gmsh...not found Checking for program /usr/lpp/mmfs/bin/gmsh...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/gmsh...not found child config.packages.gmsh 0.001255 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.001359 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.001344 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.001326 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.001326 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.001334 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.001335 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/c2html...not found Checking for program /sw/summit/xalt/1.2.1/bin/c2html...not found Checking for program /sw/summit/forge/20.0.1/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/c2html...not found Checking for program /sw/summit/gcc/6.4.0/bin/c2html...not found Checking for program /sw/summit/cuda/10.1.243/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/c2html...not found Checking for program /sw/sources/hpss/bin/c2html...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/c2html...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/c2html...not found Checking for program /opt/ibm/csm/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /opt/ibm/flightlog/bin/c2html...not found Checking for program /opt/ibutils/bin/c2html...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/c2html...not found Checking for program /opt/puppetlabs/bin/c2html...not found Checking for program /usr/lpp/mmfs/bin/c2html...not found Checking for program /gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.001838 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.001347 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.001332 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.001325 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.001328 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.001108 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.001191 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.001189 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:891) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['regex.h'] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.MPI /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['regex.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1017) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:949) By default we don't care about checking if the library is shared child config.packages.regex 0.470712 Defined "PYTHON_EXE" to ""/usr/bin/python"" Executing: /usr/bin/python -c "import Cython" Executing: /usr/bin/python -c "import numpy" child config.packages.python 0.034275 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:103) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.002146 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.001751 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:95) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.001646 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.001216 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.001202 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001331 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001387 child config.packages.cxxlibs 0.000011 ============================================================================================= TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:48) Looking for default CMake executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/cmake...not found Checking for program /sw/summit/xalt/1.2.1/bin/cmake...not found Checking for program /sw/summit/forge/20.0.1/bin/cmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/cmake...not found Checking for program /sw/summit/gcc/6.4.0/bin/cmake...not found Checking for program /sw/summit/cuda/10.1.243/bin/cmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake...found Defined make macro "CMAKE" to "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake" Looking for default CTest executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ctest...not found Checking for program /sw/summit/xalt/1.2.1/bin/ctest...not found Checking for program /sw/summit/forge/20.0.1/bin/ctest...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ctest...not found Checking for program /sw/summit/gcc/6.4.0/bin/ctest...not found Checking for program /sw/summit/cuda/10.1.243/bin/ctest...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ctest...found Defined make macro "CTEST" to "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ctest" Executing: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake --version stdout: cmake version 3.18.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.18.2 child config.packages.cmake 0.015761 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.001601 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001355 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.001354 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.001341 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.zlib 0.001339 child config.packages.mathlib 0.000014 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.001349 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001334 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.001346 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.001431 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.001348 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.metis(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/packages/metis.py:49) ================================================================================== Checking for a functional metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Found a copy of METIS in git.metis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v5.1.0-p10^{commit}'] Executing: ['git', 'rev-parse', 'v5.1.0-p10'] stdout: c8d2dc1e751ef7ebe5e221156d7572d7cea26990 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing metis.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'c8d2dc1e751ef7ebe5e221156d7572d7cea26990'] Have to rebuild METIS, /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/metis.petscconf != /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/petsc/conf/pkg.conf.metis ============================================================================================= Configuring METIS with cmake; this may take several minutes ============================================================================================= Executing: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-g -O0" -DCMAKE_C_FLAGS_DEBUG:STRING="-g -O0" -DCMAKE_C_FLAGS_RELEASE:STRING="-g -O0" -DCMAKE_CXX_COMPILER="mpicxx" -DCMAKE_CXX_FLAGS:STRING="-g -O0" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-g -O0" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-g -O0" -DBUILD_SHARED_LIBS=on -DGKLIB_PATH=../GKlib -DGKRAND=1 -DSHARED=1 -DMATH_LIB="-lm" stdout: -- The C compiler identification is GNU 6.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for getline -- Looking for getline - found -- Performing Test HAVE__thread -- Performing Test HAVE__thread - Success -- checking for __thread thread-local storage - found -- Configuring done -- Generating done -- Build files have been written to: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build ============================================================================================= Compiling and installing METIS; this may take several minutes ============================================================================================= Executing: /usr/bin/gmake -j8 -l166.4 stdout: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -S/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis -B/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -E cmake_progress_start /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/CMakeFiles /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build' cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build && /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -E cmake_depends "Unix Makefiles" /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build' [ 9%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/evaluate.c.o cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib/evaluate.c [ 11%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/b64.c.o cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && 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-I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/blas.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib/blas.c [ 12%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fs.c.o cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/csr.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib/csr.c cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/error.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib/error.c cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib/fkvkselect.c cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/fs.c.o -c 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-I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/sfm.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/sfm.c [ 91%] Building C object libmetis/CMakeFiles/metis.dir/srefine.c.o cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/srefine.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/srefine.c [ 93%] Building C object libmetis/CMakeFiles/metis.dir/stat.c.o cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && 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object libmetis/CMakeFiles/metis.dir/timing.c.o cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/timing.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/timing.c [ 96%] Building C object libmetis/CMakeFiles/metis.dir/util.c.o cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/util.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/util.c [ 98%] Building C object libmetis/CMakeFiles/metis.dir/wspace.c.o cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -Dmetis_EXPORTS -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/. -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/include -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/wspace.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/libmetis/wspace.c [100%] Linking C shared library libmetis.so cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/libmetis && /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -E cmake_link_script CMakeFiles/metis.dir/link.txt --verbose=1 /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -fPIC -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -shared -Wl,-soname,libmetis.so -o libmetis.so CMakeFiles/metis.dir/__/GKlib/b64.c.o CMakeFiles/metis.dir/__/GKlib/blas.c.o CMakeFiles/metis.dir/__/GKlib/csr.c.o CMakeFiles/metis.dir/__/GKlib/error.c.o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o CMakeFiles/metis.dir/__/GKlib/fs.c.o CMakeFiles/metis.dir/__/GKlib/getopt.c.o CMakeFiles/metis.dir/__/GKlib/gkregex.c.o CMakeFiles/metis.dir/__/GKlib/graph.c.o CMakeFiles/metis.dir/__/GKlib/htable.c.o CMakeFiles/metis.dir/__/GKlib/io.c.o CMakeFiles/metis.dir/__/GKlib/itemsets.c.o CMakeFiles/metis.dir/__/GKlib/mcore.c.o CMakeFiles/metis.dir/__/GKlib/memory.c.o CMakeFiles/metis.dir/__/GKlib/omp.c.o CMakeFiles/metis.dir/__/GKlib/pdb.c.o CMakeFiles/metis.dir/__/GKlib/pqueue.c.o CMakeFiles/metis.dir/__/GKlib/random.c.o CMakeFiles/metis.dir/__/GKlib/rw.c.o CMakeFiles/metis.dir/__/GKlib/seq.c.o CMakeFiles/metis.dir/__/GKlib/sort.c.o CMakeFiles/metis.dir/__/GKlib/string.c.o CMakeFiles/metis.dir/__/GKlib/timers.c.o CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o CMakeFiles/metis.dir/__/GKlib/util.c.o CMakeFiles/metis.dir/auxapi.c.o CMakeFiles/metis.dir/balance.c.o CMakeFiles/metis.dir/bucketsort.c.o CMakeFiles/metis.dir/checkgraph.c.o CMakeFiles/metis.dir/coarsen.c.o CMakeFiles/metis.dir/compress.c.o CMakeFiles/metis.dir/contig.c.o CMakeFiles/metis.dir/debug.c.o CMakeFiles/metis.dir/fm.c.o CMakeFiles/metis.dir/fortran.c.o CMakeFiles/metis.dir/frename.c.o CMakeFiles/metis.dir/gklib.c.o CMakeFiles/metis.dir/graph.c.o CMakeFiles/metis.dir/initpart.c.o CMakeFiles/metis.dir/kmetis.c.o CMakeFiles/metis.dir/kwayfm.c.o CMakeFiles/metis.dir/kwayrefine.c.o CMakeFiles/metis.dir/mcutil.c.o CMakeFiles/metis.dir/mesh.c.o CMakeFiles/metis.dir/meshpart.c.o CMakeFiles/metis.dir/minconn.c.o CMakeFiles/metis.dir/mincover.c.o CMakeFiles/metis.dir/mmd.c.o CMakeFiles/metis.dir/ometis.c.o CMakeFiles/metis.dir/options.c.o CMakeFiles/metis.dir/parmetis.c.o CMakeFiles/metis.dir/pmetis.c.o CMakeFiles/metis.dir/refine.c.o CMakeFiles/metis.dir/separator.c.o CMakeFiles/metis.dir/sfm.c.o CMakeFiles/metis.dir/srefine.c.o CMakeFiles/metis.dir/stat.c.o CMakeFiles/metis.dir/timing.c.o CMakeFiles/metis.dir/util.c.o CMakeFiles/metis.dir/wspace.c.o -lm gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build' [100%] Built target metis gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build' /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -E cmake_progress_start /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/petsc-build/CMakeFiles 0/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib/error.c: In function 'gk_strerror': /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib/error.c:183:3: warning: implicit declaration of function 'strerror_r' [-Wimplicit-function-declaration] strerror_r(errnum, buf, 1024); ^~~~~~~~~~ /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib/csr.c: In function 'gk_csr_Normalize': /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib/csr.c:1344:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] else if (norm == 1) ^~ /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.metis/GKlib/csr.c:1346:11: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' for (j=ptr[i]; j Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['metis.h'] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include'] ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.metis/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -g -O0 -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include /tmp/petsc-4ZRdGX/config.packages.metis/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-4ZRdGX/config.packages.metis/conftest.c: In function 'main': /tmp/petsc-4ZRdGX/config.packages.metis/conftest.c:8:7: warning: extra tokens at end of #endif directive [-Wendif-labels] #endif; ^ Source: #include "confdefs.h" #include "conffix.h" #include "metis.h" int main() { #if (IDXTYPEWIDTH != 32) #error incompatible IDXTYPEWIDTH #endif; return 0; } ============================================================================================= TESTING: checkVersion from config.packages.metis(config/BuildSystem/config/package.py:1017) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "metis.h" ;petscpkgver(METIS_VER_MAJOR.METIS_VER_MINOR.METIS_VER_SUBMINOR); Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include /tmp/petsc-4ZRdGX/config.packages.metis/conftest.c For metis need <= 5.1.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.metis(config/BuildSystem/config/package.py:949) By default we don't care about checking if the library is shared child config.packages.metis 5.464243 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001585 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.parmetis(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.parmetis(config/BuildSystem/config/packages/parmetis.py:41) ================================================================================== Checking for a functional parmetis Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Found a copy of PARMETIS in git.parmetis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v4.0.3-p6^{commit}'] Executing: ['git', 'rev-parse', 'v4.0.3-p6'] stdout: 475d8facbb324527c205f1f78a7c90bd160bddcd Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing parmetis.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '475d8facbb324527c205f1f78a7c90bd160bddcd'] Have to rebuild PARMETIS, /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/parmetis.petscconf != /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/petsc/conf/pkg.conf.parmetis ============================================================================================= Configuring PARMETIS with cmake; this may take several minutes ============================================================================================= Executing: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-g -O0" -DCMAKE_C_FLAGS_DEBUG:STRING="-g -O0" -DCMAKE_C_FLAGS_RELEASE:STRING="-g -O0" -DCMAKE_CXX_COMPILER="mpicxx" -DCMAKE_CXX_FLAGS:STRING="-g -O0" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-g -O0" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-g -O0" -DBUILD_SHARED_LIBS=on -DGKLIB_PATH=../headers -DMETIS_PATH=/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp -DSHARED=1 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON stdout: -- The C compiler identification is GNU 6.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Configuring done -- Generating done -- Build files have been written to: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build ============================================================================================= Compiling and installing PARMETIS; this may take several minutes ============================================================================================= Executing: /usr/bin/gmake -j8 -l166.4 stdout: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -S/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis 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-I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/libparmetis/. -g -O0 -fPIC -o CMakeFiles/parmetis.dir/xyzpart.c.o -c /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/libparmetis/xyzpart.c [100%] Linking C shared library libparmetis.so cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build/libparmetis && /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -E cmake_link_script CMakeFiles/parmetis.dir/link.txt --verbose=1 /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc -fPIC -g -O0 -shared -Wl,-soname,libparmetis.so -o libparmetis.so CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o 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CMakeFiles/parmetis.dir/remap.c.o CMakeFiles/parmetis.dir/renumber.c.o CMakeFiles/parmetis.dir/rmetis.c.o CMakeFiles/parmetis.dir/selectq.c.o CMakeFiles/parmetis.dir/serial.c.o CMakeFiles/parmetis.dir/stat.c.o CMakeFiles/parmetis.dir/timer.c.o CMakeFiles/parmetis.dir/util.c.o CMakeFiles/parmetis.dir/wave.c.o CMakeFiles/parmetis.dir/weird.c.o CMakeFiles/parmetis.dir/wspace.c.o CMakeFiles/parmetis.dir/xyzpart.c.o -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib: -lmetis gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build' [100%] Built target parmetis gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build' /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -E cmake_progress_start /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build/CMakeFiles 0/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -S/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis -B/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -E cmake_progress_start /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build/CMakeFiles /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build' cd /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build && /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -E cmake_depends "Unix Makefiles" /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/libparmetis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build/libparmetis /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build gmake[2]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build' gmake[2]: Nothing to be done for `libparmetis/CMakeFiles/parmetis.dir/build'. gmake[2]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build' [100%] Built target parmetis gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build' /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -E cmake_progress_start /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 preinstall gmake[1]: Entering directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build' gmake[1]: Nothing to be done for `preinstall'. gmake[1]: Leaving directory `/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/externalpackages/git.parmetis/petsc-build' Install the project... /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Up-to-date: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include/parmetis.h -- Installing: /gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/libparmetis.so -- Set runtime path of "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/libparmetis.so" to "/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib"********End of Output of running make on PARMETIS ******* Checking for library in Download PARMETIS: ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/libparmetis.a'] Contents: ['include', 'bin', 'externalpackages', 'lib'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ParMETIS_V3_PartKway] in library ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/libparmetis.a'] ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/libmetis.a', 'libm.a'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_V3_PartKway(); static void _check_ParMETIS_V3_PartKway() { ParMETIS_V3_PartKway(); } int main() { _check_ParMETIS_V3_PartKway();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib -lparmetis -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib -lmetis -lm -lstdc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" Checking for optional headers [] in Download PARMETIS: ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include'] Found header files [] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include'] Checking for headers ['parmetis.h'] in Download PARMETIS: ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['parmetis.h'] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include'] Checking include with compiler flags var CPPFLAGS ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include', '/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.headers -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['parmetis.h'] in ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include'] Checking for functions [ParMETIS_ComputeVertexSeparator] in library ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/libparmetis.a'] ['/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib/libmetis.a', 'libm.a'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_ComputeVertexSeparator(); static void _check_ParMETIS_ComputeVertexSeparator() { ParMETIS_ComputeVertexSeparator(); } int main() { _check_ParMETIS_ComputeVertexSeparator();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib -lparmetis -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/lib -lmetis -lm -lstdc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" ============================================================================================= TESTING: checkVersion from config.packages.parmetis(config/BuildSystem/config/package.py:1017) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "parmetis.h" ;petscpkgver(PARMETIS_MAJOR_VERSION.PARMETIS_MINOR_VERSION.PARMETIS_SUBMINOR_VERSION); Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.parmetis -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-summit-opt-gnu-kokkos-omp/include /tmp/petsc-4ZRdGX/config.packages.parmetis/conftest.c For parmetis need <= 4.0.3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:949) By default we don't care about checking if the library is shared child config.packages.parmetis 4.020922 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.001601 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.007658 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.med 0.001361 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.001212 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.001334 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.001327 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.001329 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.001347 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS2(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS2(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS2 0.001342 child config.packages.flibs 0.000013 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.001616 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.001333 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.001332 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.fblaslapack 0.001254 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.X(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.X 0.001205 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.001332 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.001338 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.001553 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -g -O0 /tmp/petsc-4ZRdGX/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.packages.parmetis -I/tmp/petsc-4ZRdGX/config.headers /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['pthread.h'] in [] ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.pthread/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 /tmp/petsc-4ZRdGX/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.pthread/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 /tmp/petsc-4ZRdGX/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.packages.parmetis -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.pthread /tmp/petsc-4ZRdGX/config.packages.pthread/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1017) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:949) By default we don't care about checking if the library is shared child config.packages.pthread 0.651840 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.001576 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.001363 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.001349 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.001352 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.openmp(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.openmp(config/BuildSystem/config/packages/openmp.py:20) Checks for OpenMP compiler flags Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #if defined(_OPENMP) opmv=_OPENMP #else #error "No _OPENMP macro, something is wrong with the OpenMP install" #endif Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.packages.parmetis -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.pthread -I/tmp/petsc-4ZRdGX/config.packages.openmp -fopenmp /tmp/petsc-4ZRdGX/config.packages.openmp/conftest.c Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fopenmp Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #if !defined(_OPENMP) #error "No _OPENMP macro, something is wrong with the OpenMP install" #endif Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.packages.parmetis -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.pthread -I/tmp/petsc-4ZRdGX/config.packages.openmp -fopenmp /tmp/petsc-4ZRdGX/config.packages.openmp/conftest.c Executing: mpicxx -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fopenmp ================================================================================== Checking for a functional openmp Not checking for library in Compiler specific search OPENMP: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search OPENMP: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['omp.h'] in Compiler specific search OPENMP: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['omp.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.packages.parmetis -I/tmp/petsc-4ZRdGX/config.packages.pthread -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.openmp /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['omp.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.openmp(config/BuildSystem/config/package.py:1017) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.openmp(config/BuildSystem/config/package.py:949) By default we don't care about checking if the library is shared child config.packages.openmp 0.360708 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.001601 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.001363 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.001335 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.001340 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.001345 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.001269 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:448) ================================================================================ Checking for BLAS and LAPACK in User specified BLAS/LAPACK library ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack'] ['libm.a'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -fopenmp -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.libraries/conftest.o: In function `_check_ddot': /tmp/petsc-4ZRdGX/config.libraries/conftest.c:5: undefined reference to `ddot' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.libraries/conftest' collect2: error: ld returned 1 exit status Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack'] ['libm.a'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -fopenmp -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Checking for functions [dgetrs_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack'] ['libm.a'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -fopenmp -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Checking for functions [dgeev_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack'] ['libm.a'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -fopenmp -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Found underscore name mangling on BLAS/LAPACK Defined "BLASLAPACK_UNDERSCORE" to "1" ============================================================================================= TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:545) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack', 'libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -fopenmp -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /tmp/petsc-4ZRdGX/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.libraries/conftest' collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:583) Check for the IBM ESSL library Checking for functions [iessl] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack', 'libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -fopenmp -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-4ZRdGX/config.libraries/conftest.c:5: undefined reference to `iessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.libraries/conftest' collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:591) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack', 'libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -fopenmp -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-4ZRdGX/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-4ZRdGX/config.libraries/conftest.c:5: undefined reference to `ipessl' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-4ZRdGX/config.libraries/conftest' collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:616) Check for missing LAPACK routines Checking for functions [dgelss_ dgerfs_ dgges_ dhgeqz_ dhseqr_ dorgqr_ dormqr_ dstebz_ dstegr_ dstein_ dsteqr_ dsytri_ dtgsen_ dtrsen_ dtrtrs_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack'] ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack', 'libm.a'] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dhgeqz_(); static void _check_dhgeqz_() { dhgeqz_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dormqr_(); static void _check_dormqr_() { dormqr_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dstegr_(); static void _check_dstegr_() { dstegr_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } char dsytri_(); static void _check_dsytri_() { dsytri_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dtrtrs_(); static void _check_dtrtrs_() { dtrtrs_(); } int main() { _check_dgelss_(); _check_dgerfs_(); _check_dgges_(); _check_dhgeqz_(); _check_dhseqr_(); _check_dorgqr_(); _check_dormqr_(); _check_dstebz_(); _check_dstegr_(); _check_dstein_(); _check_dsteqr_(); _check_dsytri_(); _check_dtgsen_(); _check_dtrsen_(); _check_dtrtrs_();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -fopenmp -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:632) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64', '-lblas', '-llapack', 'libm.a'] [] ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.libraries/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.libraries/conftest -fopenmp -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.libraries/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBLAPACK" to "1" Defined "HAVE_LIBM" to "1" ===== Checking compiler Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: mpicc -o /tmp/petsc-4ZRdGX/config.setCompilers/libconftest.so -fopenmp -shared -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.setCompilers/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lblas -llapack -lm -lstdc++ -ldl ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:691) Determines if BLAS/LAPACK routines use 32 or 64 bit integers ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /tmp/petsc-4ZRdGX/config.packages.BlasLapack/conftest.o -I/tmp/petsc-4ZRdGX/config.compilers -I/tmp/petsc-4ZRdGX/config.utilities.closure -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.utilities.cacheDetails -I/tmp/petsc-4ZRdGX/config.functions -I/tmp/petsc-4ZRdGX/config.utilities.featureTestMacros -I/tmp/petsc-4ZRdGX/config.utilities.missing -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/PETSc.options.scalarTypes -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.libraries -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.packages.BlasLapack -I/tmp/petsc-4ZRdGX/config.packages.pthread -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot_(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot_(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Executing: mpicc -o /tmp/petsc-4ZRdGX/config.packages.BlasLapack/conftest -fopenmp -g -O0 -fopenmp /tmp/petsc-4ZRdGX/config.packages.BlasLapack/conftest.o -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack -lm -lstdc++ -ldl Testing executable /tmp/petsc-4ZRdGX/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-4ZRdGX/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-4ZRdGX/config.packages.BlasLapack/conftest Checking for 64 bit blas indices: result 0 ============================================================================================= TESTING: checkCHeaders from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:523) Check for cblas.h and lapacke.h ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cblas.h', 'lapacke.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.packages.parmetis -I/tmp/petsc-4ZRdGX/config.packages.pthread -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.openmp /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-4ZRdGX/config.setCompilers -I/tmp/petsc-4ZRdGX/config.types -I/tmp/petsc-4ZRdGX/config.packages.cuda -I/tmp/petsc-4ZRdGX/config.packages.metis -I/tmp/petsc-4ZRdGX/config.packages.MPI -I/tmp/petsc-4ZRdGX/config.packages.parmetis -I/tmp/petsc-4ZRdGX/config.packages.pthread -I/tmp/petsc-4ZRdGX/config.headers -I/tmp/petsc-4ZRdGX/config.packages.openmp /tmp/petsc-4ZRdGX/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['cblas.h', 'lapacke.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1017) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:949) By default we don't care about checking if the library is shared child config.packages.BlasLapack 4.926785 ============================================================================================= TESTING: consistencyChecks from config.packages.sundials(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.sundials 0.001605 ============================================================================================= TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.001567 ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.001369 ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.p4est 0.001353 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:1017) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:949) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize 0.001901 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse(config/BuildSystem/config/packages/mkl_sparse.py:21) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse(config/BuildSystem/config/package.py:1017) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse(config/BuildSystem/config/package.py:949) By default we don't care about checking if the library is shared child config.packages.mkl_sparse 0.001881 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_cpardiso(config/BuildSystem/config/packages/mkl_cpardiso.py:20) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:953) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.001368 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos(config/BuildSystem/config/package.py:957) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.kokkos(config/BuildSystem/config/package.py:866) ============================================================================================= TESTING: configureLibrary from config.packages.kokkos(config/BuildSystem/config/packages/kokkos.py:146) ================================================================================== Checking for a functional kokkos Looking for KOKKOS at git.kokkos, hg.kokkos or a directory starting with ['kokkos'] Found a copy of KOKKOS in git.kokkos Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '3.2.00^{commit}'] Executing: ['git', 'rev-parse', '3.2.00'] stdout: 03ded4e816da5927b946065b005ebfdf38e5a438 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing kokkos.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '03ded4e816da5927b946065b005ebfdf38e5a438'] **** Configure header /tmp/petsc-4ZRdGX/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CUDA 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_GPU_AWARE 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 10 #define PETSC_HAVE_OMPI_MINOR_VERSION 03 #define PETSC_HAVE_OMPI_RELEASE_VERSION 01 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_THREADSAFETY 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PYTHON_EXE "/usr/bin/python" #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_VERSION_BRANCH_GIT "HEAD" #define PETSC_VERSION_DATE_GIT "2020-10-12 23:53:19 +0000" #define PETSC_VERSION_GIT "v3.14-146-gc8a6034" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** C specific Configure header /tmp/petsc-4ZRdGX/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Kokkos only supports a single parallel system during its configuration ******************************************************************************* File "/gpfs/alpine/csc314/scratch/adams/petsc/config/configure.py", line 452, in petsc_configure framework.configure(out = sys.stdout) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1273, in configure self.processChildren() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1261, in processChildren self.serialEvaluation(self.childGraph) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/framework.py", line 1236, in serialEvaluation child.configure() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 1137, in configure self.executeTest(self.configureLibrary) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/packages/kokkos.py", line 148, in configureLibrary config.package.Package.configureLibrary(self) File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 898, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 476, in generateGuesses d = self.checkDownload() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 610, in checkDownload return self.getInstallDir() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 365, in getInstallDir installDir = self.Install() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/package.py", line 1735, in Install args = self.formCMakeConfigureArgs() File "/gpfs/alpine/csc314/scratch/adams/petsc/config/BuildSystem/config/packages/kokkos.py", line 94, in formCMakeConfigureArgs raise RuntimeError("Kokkos only supports a single parallel system during its configuration") ================================================================================ Finishing configure run at Sun, 17 Jan 2021 22:34:40 -0500 ================================================================================