Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Mon, 21 Sep 2020 11:17:06 -0400 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-fc=0 --COPTFLAGS="-g -O -fPIC -DFP_DIM=2" --CXXOPTFLAGS="-g -O -fPIC " --FOPTFLAGS="-g -O -fPIC " --CUDAOPTFLAGS="-g -O -Xcompiler -rdynamic -lineinfo--with-ctable=0" --with-ssl=0 --with-batch=0 --with-cxx=mpicxx --with-mpiexec="jsrun -g1" --with-cuda=1 --with-cudac=nvcc --download-p4est=1 --download-zlib --download-hdf5=1 --download-metis --download-parmetis --download-triangle --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack" --with-cc=mpicc --with-shared-libraries=1 --with-x=0 --with-64-bit-indices=0 --with-debugging=0 PETSC_ARCH=arch-summit-opt-gnu-cuda-omp --prefix=/gpfs/alpine/world-shared/geo127/petsc/opt-gcc-int64-cuda-omp --with-openmp=0 --with-threadsaftey=1 --with-log=1 Working directory: /autofs/nccs-svm1_home1/adams/petsc Machine platform: ('Linux', 'login3', '4.14.0-115.21.2.el7a.ppc64le', '#1 SMP Thu May 7 22:22:31 UTC 2020', 'ppc64le', 'ppc64le') Python version: 2.7.5 (default, Feb 26 2020, 09:25:01) [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/framework.py:930) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:930) child config.utilities.macosFirewall 0.000005 ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gdb...not found Checking for program /sw/summit/xalt/1.2.0/bin/gdb...not found Checking for program /sw/summit/forge/20.0.1/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/gdb...not found Checking for program /sw/summit/gcc/6.4.0/bin/gdb...not found Checking for program /sw/summit/cuda/10.1.243/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gdb...not found Checking for program /sw/sources/hpss/bin/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gdb...not found Checking for program /opt/ibm/csm/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux child config.utilities.debuggers 0.017791 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 13 #define PETSC_VERSION_SUBMINOR 5 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.003346 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000747 ================================================================================ TEST configureGit from config.sourceControl(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/git...not found Checking for program /sw/summit/xalt/1.2.0/bin/git...not found Checking for program /sw/summit/forge/20.0.1/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/git...not found Checking for program /sw/summit/gcc/6.4.0/bin/git...not found Checking for program /sw/summit/cuda/10.1.243/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/git...not found Checking for program /sw/sources/hpss/bin/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/git...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/git...not found Checking for program /opt/ibm/csm/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 1.8.3.1 ================================================================================ TEST configureMercurial from config.sourceControl(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hg...not found Checking for program /sw/summit/xalt/1.2.0/bin/hg...not found Checking for program /sw/summit/forge/20.0.1/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hg...not found Checking for program /sw/summit/gcc/6.4.0/bin/hg...not found Checking for program /sw/summit/cuda/10.1.243/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/hg...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hg...not found Checking for program /sw/sources/hpss/bin/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hg...not found Checking for program /opt/ibm/csm/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /opt/ibm/flightlog/bin/hg...not found Checking for program /opt/ibutils/bin/hg...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hg...not found Checking for program /opt/puppetlabs/bin/hg...not found Checking for program /usr/lpp/mmfs/bin/hg...not found Checking for program /ccs/home/adams/petsc/lib/petsc/bin/win32fe/hg...not found Unable to find programs ['hg'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['bsub', 'bjob', 'showusage', 'test_bsub'] ['mpirun', 'jsrun', 'ld', 'xalt_helper_functions.sh'] ['ddt-debugger-mps', 'ddt', 'ddt-debugger', 'allinea-client', 'ddt-mpirun', 'forge-probe', 'forge', 'make-profiler-libraries', 'ddt-debugger-ll', 'map', 'ddt-client'] ['shmemrun', 'profile2mat.pl', 'oshrun', 'oshmem_info', 'orterun', 'orted', 'orte-server', 'orte-info', 'orte-clean', 'ompi_info', 'ompi-server', 'ompi-clean', 'mpitool', 'mpirun', 'mpijob', 'mpiexec', 'jumpshot', 'get_nl_setting', 'efix', 'alias.pl', 'aggregate_profile.pl', 'stock', 'shmemfort', 'shmemcxx', 'shmemcc', 'shmemc++', 'shmemCC', 'oshfort', 'oshcxx', 'oshcc', 'oshc++', 'oshCC', 'ortecc', 'opal_wrapper', 'mpixlf', 'mpixlc', 'mpixlC', 'mpipgifort', 'mpipgicc', 'mpipgic++', 'mpifort', 'mpif90', 'mpif77', 'mpicxx', 'mpicc', 'mpic++', 'mpiCC', 'mpip-jsrun'] ['g++', 'c++', 'powerpc64le-none-linux-gnu-g++', 'powerpc64le-none-linux-gnu-c++', 'gfortran', 'powerpc64le-none-linux-gnu-gfortran', 'gcj', 'powerpc64le-none-linux-gnu-gcj', 'jcf-dump', 'gcov', 'gcov-tool', 'gcov-dump', 'cpp', 'gcc', 'powerpc64le-none-linux-gnu-gcc-6.4.0', 'gcc-ar', 'powerpc64le-none-linux-gnu-gcc', 'powerpc64le-none-linux-gnu-gcc-ar', 'gcc-nm', 'powerpc64le-none-linux-gnu-gcc-nm', 'gcc-ranlib', 'powerpc64le-none-linux-gnu-gcc-ranlib', 'jv-convert', 'gij', 'grmic', 'grmiregistry', 'gcj-dbtool', 'gappletviewer', 'gjarsigner', 'gkeytool', 'gjar', 'gcjh', 'gjavah', 'gnative2ascii', 'gorbd', 'grmid', 'gserialver', 'gtnameserv', 'gc-analyze', 'rebuild-gcj-db', 'aot-compile'] ['cuobjdump', 'cuda-gdb', 'cuda-gdbserver', 'gpu-library-advisor', 'cuda-memcheck', 'nsight', 'nsight_ee_plugins_manage.sh', 'nv-nsight-cu-cli', 'bin2c', 'crt', 'cudafe++', 'fatbinary', 'nvcc', 'nvcc.profile', 'nvlink', 'ptxas', 'nvdisasm', 'nvprof', 'nvprune', 'computeprof', 'nvvp', 'cuda-install-samples-10.1.sh'] ['ccmake', 'cmake', 'ctest', 'cpack'] ['darshan-mk-log-dirs.pl', 'darshan-gen-cc.pl', 'darshan-gen-cxx.pl', 'darshan-gen-fortran.pl', 'darshan-config'] ['htar', '5.0.2.9', '6.0.0.11', '5.0.2.11', 'hsi', '6.2.0.1', '6.3', '6.3.1', 'TA_Status', 'test_TA'] ['esub', 'esub.poe', 'pim', 'lsf_daemons', 'rla', 'elim.jsdl', 'named', 'esub.tv', 'esub.openmp', 'esub.mvapich', 'esub.dprov', 'sbatchd', 'esub.bproc', 'esub.openmpi', 'esub.oldtvpoe', 'esub.mpichp4', 'elim.frequency', 'esub.tvlammpi', 'esub.oldpoe', 'lim', 'esub.ls_dyna', 'esub.tvmpich_gm', 'esub.fluent', 'nios', 'esub.gold', 'esub.mpich_gm', 'esub.pvm', 'esub.intelmpi', 'esub.mpich_mx', 'eauth.krb5', 'res', 'tmp.elim.sa', 'eauth', 'esub.tvpoe', 'mesub', 'esub.mpich2', 'melim', 'esub.lammpi'] ['brsvjob', 'lspasswd', 'bmgroup', 'bpost', 'btop', 'bclusters', 'lsplace', 'bjdepinfo', 'lsreghost', 'brsvs', 'bparams', 'bgadd', 'lsrun', 'lsload', 'breconfig', 'lsfrestart', 'bconf', 'bmod', 'bsub', 'lsunlockhost', 'bmodify', 'bread', 'bacct', 'lsfrsv', 'lsgrun', 'bslots', 'bapp', 'bjobs', 'lsmail', 'lsfstartup', 'lsmake4', 'lslockhost', 'lsfshutdown', 'bpeek', 'lsrun.sh', 'lslogin', 'bimages', 'bchkpnt', 'bwait', 'lsfhadoop.sh', 'bsla', 'brsvmod', 'lsrtasks', 'blimits', 'busers', 'bresources', 'bqueues', 'brequeue', 'bmg', 'lsrcp', 'lseligible', 'lshosts', 'lsloadadj', 'breboot', 'lsacct', 'lsclusters', 'bugroup', 'lsltasks', 'lsadmin', 'bstatus', 'bgbroker', 'bgdel', 'bentags', 'lsportcheck', 'brsvsub', 'lsf-start-spark.sh', 'bqc', 'bhpart', 'lsf-spark-shell.sh', 'lsmakerm', 'lsf-spark-submit.sh', 'brestart', 'bswitch', 'bjgroup', 'lsreconfig', 'lammpirun_wrapper', 'lsf-stop-spark.sh', 'badmin', 'bbot', 'bstop', 'lsinfo', 'brun', 'bhist', 'bhosts', 'bgmod', 'brsvadd', 'bkill', 'brlainfo', 'brsvdel', 'xagent', 'bresize', 'bmig', 'lsmon', 'lsid', 'bgpinfo', 'lsmake', 'bresume', 'blaunch', 'lsacctmrg'] ['csm_bb_vg_create', 'csm_node_find_job', 'csm_cluster_query_state', 'csm_allocation_create', 'csm_ib_cable_update', 'csm_allocation_query_active_all', 'csm_bb_lv_delete', 'csm_allocation_update_state', 'csm_switch_attributes_update', 'csm_soft_failure_recovery', 'csm_diag_run_query', 'csm_allocation_step_begin', 'csm_bb_vg_delete', 'csm_node_attributes_query_history', 'csm_allocation_query_details', 'csm_node_attributes_query_details', 'csm_diag_run_query_details', 'csm_ras_event_create', 'csm_diag_run_begin', 'csm_node_resources_query_all', 'csm_allocation_query', 'csm_ras_event_query_allocation', 'csm_switch_attributes_query', 'csm_node_attributes_query', 'csm_switch_attributes_query_details', 'csm_infrastructure_health_check', 'csm_node_attributes_update', 'csm_ras_msg_type_create', 'csm_ras_msg_type_delete', 'csm_ras_msg_type_query', 'csm_node_query_state_history', 'csm_switch_attributes_query_history', 'csm_allocation_step_query_active_all', 'csm_bb_lv_create', 'csm_node_resources_query', 'csm_allocation_delete', 'csm_ras_event_query', 'csm_allocation_resources_query', 'csm_diag_result_create', 'csm_node_delete', 'csm_ras_msg_type_update', 'csm_bb_vg_query', 'csm_ib_cable_query_history', 'csm_diag_run_end', 'csm_allocation_step_query', 'csm_allocation_step_query_details', 'csm_allocation_update_history', 'csm_allocation_step_end', 'csm_ib_cable_query', 'csm_jsrun_cmd', 'csm_bb_lv_query'] [] ['sview', 'strigger', 'sstat', 'sshare', 'srun', 'sreport', 'squeue', 'sprio', 'smap', 'sinfo', 'sgather', 'sdiag', 'scontrol', 'scancel', 'sbcast', 'sbatch', 'sattach', 'salloc', 'sacctmgr', 'sacct', 'jobsub', 'jobstat', 'ctags', 'diffstat', 'rpmsign', 'swig', 'ccache-swig', 'ocs', 'cscope-indexer', 'cscope', 'doxygen', 'unwrapdiff', 'splitdiff', 'rediff', 'recountdiff', 'lsdiff', 'interdiff', 'grepdiff', 'flipdiff', 'fixcvsdiff', 'filterdiff', 'espdiff', 'editdiff', 'dehtmldiff', 'combinediff', 'yacc', 'byacc', 'indent', 'rlog', 'rcsmerge', 'rcsfreeze', 'rcsdiff', 'rcsclean', 'rcs', 'merge', 'ident', 'co', 'ci', 'svnversion', 'svnsync', 'svnserve', 'svnrdump', 'svnlook', 'svndumpfilter', 'svnadmin', 'svn', 'intltoolize', 'intltool-update', 'intltool-prepare', 'intltool-merge', 'intltool-extract', 'gettextize', 'autopoint', 'stap-report', 'stapsh', 'staprun', 'stap-merge', 'stap-prep', 'stap', 'screen', 'rhn_register', 'whiptail', 'subscription-manager', 'rhsmcertd', 'rhsm-debug', 'rct', 'consolehelper', 'pyinotify', 'easy_install-2.7', 'easy_install', 'snmpwalk', 'snmpvacm', 'snmpusm', 'snmptrap', 'snmptranslate', 'snmptls', 'snmptest', 'snmptable', 'snmpstatus', 'snmpset', 'snmpnetstat', 'snmpinform', 'snmpgetnext', 'snmpget', 'snmpdf', 'snmpdelta', 'snmpbulkwalk', 'snmpbulkget', 'encode_keychange', 'chardetect', 'atopsar', 'atopd', 'atopconvert', 'atop', 'abrt-dump-oops', 'abrt-action-save-kernel-data', 'abrt-action-analyze-oops', 'abrt-action-trim-files', 'abrt-action-perform-ccpp-analysis', 'abrt-action-list-dsos', 'abrt-action-install-debuginfo', 'abrt-action-generate-core-backtrace', 'abrt-action-generate-backtrace', 'abrt-action-analyze-vulnerability', 'abrt-action-analyze-core', 'abrt-action-analyze-ccpp-local', 'abrt-action-analyze-c', 'abrt-action-analyze-backtrace', 'abrt-watch-log', 'abrt-handle-upload', 'abrt-action-save-package-data', 'abrt-action-notify', 'abrt-action-analyze-xorg', 'reporter-ureport', 'reporter-rhtsupport', 'libtar', 'satyr', 'git', 'git-receive-pack', 'git-upload-archive', 'git-upload-pack', 'git-shell', 'lex', 'tset', 'pk12util', 'as', 'lpr.cups', 'speaker-test', 'manpath', 'hwloc-gather-topology', 'hwloc-calc', 'rev', 'snmpconf', 'sctp_darn', 'trust', 'nm', 'fc-pattern', 'ucs2any', 'zforce', 'groups', 'gunzip', 'tracepath', 'rdma_xclient', 'unalias', 'db_upgrade', 'dbus-uuidgen', 'uuidgen', 'uname', 'df', 'fc-match', 'evim', 'schemagen', 'sessreg', 'rdoc', 'gdbus-codegen', 'perl', 'perl5.16.3', 'egrep', 'mlxcables', 'recode-sr-latin', 'pkcheck', 'GET', 'rvim', 'addr2line', 'gsdj500', 'rpmbuild', 'amixer', 'unexpand', 'ypchsh', 'yppasswd', 'ypchfn', 'install', 'cancel.cups', 'msggrep', 'mwm', 'gcc-nm', 'remunge', 'ibgenperm', 'thumbpdf', 'nsenter', 'clean-binary-files', 'httpcfg', 'mlnx_dump_parser', 'ghci', 'autoexpect', 'ntpstat', 'texluac', 'dtestsrq', 'lz4cat', 'pkttyagent', 'python2', 'pkla-admin-identities', 'hpc', 'tail', 'size', 'fc-query', 'mkluatexfontdb', 'dbus-cleanup-sockets', 'nisdomainname', 'ldapurl', 'xsd', 'startx', 'crash', 'mcdiff', 'make', 'gslp', 'mktexfmt', 'pmafm', 'xdg-desktop-icon', 'ldappasswd', 'csh', 'printenv', 'vncconfig', 'wqdump_ext', 'gendiff', 'mst_cable', 'X', 'mstvpd', 'zmore', 'db_hotbackup', 'signver', 'systemctl', 'amsvis', 'tbl', 'xmessage', 'servertool', 'sn', 'embedspu', 'rview', 'nohup', 'grops', 'geoipupdate', 'xfd', 'rm', 'infotocap', 'pwscore', 'eu-objdump', 'mysql', 'mailq.postfix', 'ptx', 'systemd-loginctl', 'mstop', 'rxe_cfg', 'ar', 'ccrewrite', 'diff-jars', 'python', 'pmsocks', 'migspeed', 'xmbind', 'objcopy', 'alias', 'dos2unix', 'ca-legacy', 'tclsh', 'ofed_rpm_info', 'hwloc-assembler-remote', 'vimtutor', 'lprm', 'pygtk-demo', 'jjs', 'prtstat', 'seq', 'col', 'pdcp', 'eu-strip', 'ib_acme', 'resourcedump', 'dirname', 'fc-cache-64', 'lesskey', 'date', 'basename', 'grep', 'geoiplookup6', 'ssh-copy-id', 'xterm', 'svcutil', 'libpng-config', 'dvilualatex', 'db_load', 'systemd-notify', 'dracut', 'texconfig', 'haddock', 'xrandr', 'umount', 'xdg-mime', 'prlimit', 'ucx_info', 'infokey', 'pstree.x11', 'mono-test-install', 'write', 'geqn', 'xdg-screensaver', 'glib-mkenums', 'sudoedit', 'mst', 'ghc-pkg-7.6.3', 'wall', 'dgawk', 'ibv_polldcinfo', 'ppc64le-redhat-linux-gcc', 'gcc', 'xzcat', 'simpdftex', 'cvsbug', 'pdflatex', 'mlxburn', 'ping', 'column', 'fc-cache', 'pinentry-curses', 'pmlogextract', 'scp', 'stdbuf', 'mlxcables_ext', 'renice', 'file', 'raw_ethernet_bw', 'msguniq', 'appletviewer', 'pdf2dsc', 'mlxpci', 'dig', 'gem', 'coredumpctl', 'eu-size', 'conjure', 'mlnx_conf_mgr.sh', 'alsaunmute', 'command', 'cd', 'sha1sum', 'xsltproc', 'hp2ps', 'erb', 'update-desktop-database', 'gtk-update-icon-cache', 'crontab', 'icewm', 'mktexmf', 'whoami', 'ttmkfdir', 'uxterm', 'ucx_perftest', 'ibcongest', 'mlnx_perf', 'funzip', 'ghc', 'pkg-config', 'nvidia-persistenced', 'unzipsfx', 'bootctl', 'fc-conflist', 'pango-querymodules-64', 'splain', 'curl', 'arch', 'xinit', 'pfbtopfa', 'mozroots', 'setsid', 'setterm', 'gr2fonttest', 'wqdump', 'gzexe', 'gtk-launch', 'compare', 'aseqdump', 'cc', 'nvidia-debugdump', 'icesh', 'udevadm', 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'cache_writeback', 'newusers', 'selabel_partial_match', 'makedumpfile', 'show_gids', 'mlnx_affinity', 'ofed_uninstall.sh', 'vgexport', 'lvmdump', 'nslcd', 'pvresize', 'partprobe', 'set_irq_affinity_bynode.sh', 'show_irq_affinity.sh', 'dump_fts', 'errinjct', 'hardlink', 'matchpathcon', 'fdformat', 'vgextend', 'fsfreeze', 'ofpathname', 'pwck', 'dhclient', 'postdrop', 'sendmail.postfix', 'vgcfgbackup', 'sulogin', 'hack-coff', 'lpc.cups', 'xfs_info', 'ypbind', 'nameif', 'nstat', 'mkfs.cramfs', 'sim_server', 'activate_firmware', 'nfsstat', 'opensm', 'gssproxy', 'ibaddr', 'mkfs.xfs', 'groupadd', 'halt', 'osmtest', 'lvmpolld', 'lsmcode', 'pvs', 'lvremove', 'start-statd', 'debugfs', 'setpci', 'selinuxexeccon', 'ibportstate', 'rtmon', 'ibcheckerrors', 'vgimportclone', 'e2label', 'tune2fs', 'rtas_dump', 'postfix', 'lnstat', 'dump_mfts.sh', 'thin_restore', 'check_lft_balance.pl', 'ibidsverify.pl', 'cma_roce_tos', 'selabel_lookup', 'ip6tables-save', 'rmmod', 'cache_metadata_size', 'nsm', 'run_srp_daemon', 'runuser', 'xfs_metadump', 'getcap', 'sefcontext_compile', 'ip', 'iptables', 'glibc_post_upgrade.ppc64le', 'fsadm', 'iblinkinfo.pl', 'ibqueryerrors.pl', 'setfiles', 'sys_ident', 'dhclient-script', 'tracepath6', 'findfs', 'getsebool', 'cbq', 'e2image', 'blkdiscard', 'uuserver', 'ifcfg', 'shutdown', 'smtp-source', 'install-info', 'set_nodedesc.sh', 'xfs_repair', 'rsyslogd', 'rpcdebug', 'lvm', 'mkhomedir_helper', 'pvscan', 'logsave', 'pwconv', 'unsquashfs', 'ntp-keygen', 'e2undo', 'blkmapd', 'vgscan', 'osd_login', 'umount.nfs', 'ibcheckerrs', 'rpc.nfsd', 'iblinkinfo', 'ibtracert', 'cfdisk', 'common_irq_affinity.sh', 'modinfo', 'sasldblistusers2', 'rtpr', 'selinuxconlist', 'wrapper', 'blkid', 'ibclearerrors', 'lvmconf', 'xqmstats', 'vgsplit', 'postsuper', 'thin_check', 'filefrag', 'adduser', 'redhat_lsb_trigger.ppc64le', 'dump_lfts.sh', 'drmgr', 'cache_check', 'crond', 'pvchange', 'vendstat', 'setenforce', 'addgnupghome', 'tcpdmatch', 'reboot', 'vipw', 'rpc.gssd', 'cracklib-format', 'perfquery', 'sln', 'pivot_root', 'create-cracklib-dict', 'quotaon', 'groupdel', 'ptp4l', 'mkfs', 'xfs_estimate', 'dmeventd', 'gss-server', 'usernetctl', 'show_counters', 'xfs_ncheck', 'vgchange', 'grpunconv', 'quotastats', 'iptunnel', 'dkms', 'resizepart', 'sysctl_perf_tuning', 'xfs_mkfile', 'repquota', 'ip6tables-restore', 'lusermod', 'wipefs', 'sshd', 'ifdown', 'cache_restore', 'arp', 'pvremove', 'clock', 'tickadj', 'ldconfig', 'selinuxdefcon', 'lvreduce', 'vigr', 'quot', 'vgdisplay', 'lchage', 'arping', 'ibacm', 'ibcheckportstate', 'smparquery', 'insmod', 'addnote', 'lvmetad', 'ibprintca.pl', 'switch_root', 'hwclock', 'kpartx', 'ifstat', 'sysinfo-snapshot.py', 'setsebool', 'edquota', 'killall5', 'pidof', 'anacron', 'service', 'sfdisk', 'vgimport', 'vgrename', 'sm-notify', 'lvmdiskscan', 'lvscan', 'selinuxenabled', 'nologin', 'atd', 'accessdb', 'ibcheckstate', 'userdel', 'lsvio', 'ibnodes', 'weak-modules', 'quotaoff', 'setquota', 'era_invalidate', 'automount', 'xfs_copy', 'sosreport', 'consoletype', 'phc_ctl', 'safe_finger', 'ppc64_cpu', 'mlnx_eswitch_set', 'uesensor', 'rpc.mountd', 'ls-vscsi', 'ibsysstat', 'modprobe', 'ibstatus', 'lgroupadd', 'vgs', 'rtacct', 'pdata_tools', 'telinit', 'setup_mr_cache.sh', 'poweroff', 'lsof', 'slattach', 'visudo', 'ibcheckportwidth', 'update-pciids', 'nscd', 'update_flash', 'smtp-sink', 'mkswap', 'sushell', 'lvmconfig', 'mktree', 'xfs_admin', 'ctstat', 'lvrename', 'ibmirror', 'pam_tally2', 'chkconfig', 'pam_console_apply', 'xfs_io', 'ib2ib_setup', 'nfsdcltrack', 'mksquashfs', 'umount.nfs4', 'arpd', 'rtas_ibm_get_vpd', 'setcap', 'rtas_dbg', 'chroot', 'ibqueryerrors', 'grubby', 'timemaster', 'ibchecknet', 'installkernel', 'vgmerge', 'rpc.idmapd', 'create-munge-key', 'routef', 'mount.nfs', 'pvmove', 'ip6tables', 'postmulti', 'ibnetdiscover', 'key.dns_resolver', 'request-key', 'alsabat-test.sh', 'genhostid', 'ibswportwatch.pl', 'postmap', 'init', 'ibprintswitch.pl', 'ether-wake', 'ifenslave', 'selinux_restorecon', 'fstrim', 'xfs_fsr', 'packer', 'lgroupdel', 'vgcreate', 'mount.nfs4', 'ethtool', 'fsck.cramfs', 'postalias', 'lvextend', 'vgconvert', 'saslpasswd2', 'netreport', 'mkfs.minix', 'cma_roce_mode', 'ibcheckwidth', 'thin_metadata_size', 'faillock', 'thin_rmap', 'ibcheckport', 'pvck', 'postkick', 'ibrouters', 'pvcreate', 'tcpd', 'vgck', 'rpcbind', 'ping6', 'opal-prd', 'thin_delta', 'mii-tool', 'showmount', 'ibccquery', 'devlink', 'set_irq_affinity.sh', 'ibping', 'nfsiostat', 'mlnx_tune', 'hvcsadmin', 'unix_chkpwd', 'getenforce', 'luseradd', 'set_poweron_time', 'semodule', 'convertquota', 'applygnupgdefaults', 'fuser', 'ibccconfig', 'compat_gid_gen'] ['decoder'] ['ibmsquit', 'ibis', 'dump2slvl.pl', 'ibdiagpath', 'IBMgtSim', 'dump2psl.pl', 'ibdmchk', 'mkSimNodeDir', 'ibdiagui', 'ibdiagnet', 'RunSimTest', 'ibdmtr', 'ibtopodiff', 'ibdmsh', 'ibnlparse', 'ibmssh'] ['jsrun', 'jswait', 'jskill', 'query_env', 'export_slurm_env', 'jsm_simulator', 'js_task_info', 'admin', 'jsproxy', 'jslist', 'export_smpi_env', 'jsm', 'stock'] ['hiera', 'facter', 'puppet', 'facter-ng.bat'] ['mmtrace', 'mmsysmon.py', 'mmnfsfuncs', 'mmcesnfsmonitor', 'mmjob', 'mmdelcallback', 'tsdf', 'tschfileset', 'tslsdisk', 'tslspolicy', 'tslsfs', 'tsdelsnapshot', 'tslsfileset', 'tsnsdaccess', 'tscrsnapshot', 'tslspool', 'tssnapdir', 'tsedquota', 'tsusercmd', 'tslssnapshot', 'tsstatus', 'mmcrnsd', 'tsgetscsiinfo', 'mmqosnice', 'mmsetquota', 'mmdelfileset', 'tsprpreemptabort', 'cleanupkeystonedb', 'mmsdrfsdef.Linux', 'mmcesuserauthcrservice', 'mmdumpfilocks', 'tschdisk', 'tsaddpdisk', 'tsctl', 'tskafkaauth', 'tsdbfs', 'tscheckquota', 'tsfsctl', 'tsrpldisk', 'tschpdisk', 'tsrecgroupserver', 'tscmd', 'tsreclaimspace', 'tscrrecgroup', 'tschstoragepool', 'tsrestripefs', 'tsdefragfs', 'tsfileid', 'tsdsh', 'tsdeldisk', 'tsquotaon', 'tschfs', 'tsdefedquota', 'tsunmount', 'tsdelpdisk', 'tsressnapshot', 'tscrvdisk', 'tsquotaoff', 'tsexpelnode', 'tslsvdisk', 'tscrfs', 'tschmgr', 'tslsrecgroup', 'tslsrecoverygroupevents', 'tsdelvdisk', 'tsnsddiscover', 'tsdefquotaoff', 'tscrfileset', 'tsdelfs', 'tsdbvdisk', 'tsdelfileset', 'tsadddisk', 'tscachectl', 'tsdefquotaon', 'tschcarrier', 'tsauth', 'tslsqos', 'tslspdisk', 'tsnsdrediscover', 'tsremount', 'tsdelrecgroup', 'tschpool', 'tsrepquota', 'tschqos', 'tschrecgroup', 'tsfsck', 'tsdiag', 'tssbrff', 'mmlsfileset', 'mmexectsmcmd', 'mmgetkafkaspecinfo', 'mmfs', 'mmchconfig', 'ces.snap.py', 'mmperfmon', 'tsgetacl', 'clstrwatchcallbacks', 'mmcessmblsconfig', 'tslsattr', 'mmcesmonitord', '.links', 'mmnfsgrace', 'mmhelp-apolicy', 'mmpmon', 'mmcesnfsdelexport', 'mmchpolicy', 'gui.snap.py', 'tspcache', 'perfmon.snap.py', 'mmsdrquerydef', 'mmlsqos', 'mmxargs', 'tschattr', 'mmclidecode', 'clstrwatchconsumermanager', 'mmfsctl', 'mmpsnap', 'mmccrnv', 'perf.snap.py', 'mmcespnfsip', 'mmnfsnodeback', 'tsimgrestore', 'mmcesuserauthckservice', 'mmchnodeclass', 'pymmcesnfslsexport.py', 'mmdelacl', 'mmumount', 'mmcrnodeclass', 'mmsysmonc', 'tspcacheevict', 'mmexecvfile', 'sshwrap', 'mmgetifconf', 'mmfs-ppc64-rh4', 'sysmon.snap.py', 'mmimgrestore', 'mmcesobjaccesslinkfset', 'mmchecksubsys', 'mmcesop', 'tspmon', 'mmdefedquota', 'mmdelsnapshot', 'mmreclaimspace', 'mmsysmoncontrol', 'tsspectrumdiscover', 'mmyfields', 'mmchnode', 'mmrestorefs', 'mmcallhome', 'mmexportfs', 'mmcesnfsloadexport', 'tslspool34', 'mmnfsmonitor', 'mmsnmpagentd30', 'tsfindinode', 'mmfsfuncs.Linux', 'mmdumpperfdata', 'mmcesobjcrbase', 'mmdsh', 'objmetric_count.py', 'mmauditmount', 'mmcessmblsexport', 'mmdevdiscover', 'mmlsnode', 'mmautoload', 'mmcesnfscrexport', 'mmchnsd', 'mmfileid', 'mmcesnfsfuncs', 'mmcesrecovernode', 'mmlsfs', 'mmcollectdebugdata', 'tseditacl', 'tsbuhelper', 'tslinkfileset', 'tspreparedisk', 'mmrpldisk', 'mmdelnode', 'mmceslog', 'mmcrfsc', 'mmcesblockfuncs', 'mmgensymtable', 'mmfsd', 'mmnfsinstall', 'mmdspmsg', 'mmclone', 'mmchfs', 'mmlsdisk', 'mmnfstakeover', 'tsyselect', 'mmnfsup', 'mmcessmbcrexport', 'tsaddrmap', 'mmnetverify', 'mmchpool', 'msgqueue.snap.py', 'mmcesobjlscfg', 'tsrestorefileset', 'mmbuildgpl', 'mmsmbman', 'tsfindname', 'mmcesloadmonitor', 'mmcesobjaccess', 'mmaddcallback', 'mmcesobjpolicyfuncs', 'mmcessmbdelexport', 'msgqueueDaemonManager', 'core.snap.py', 'tsgskkm', 'mmauth', 'mmedquota', 'mmshutdown', 'tsdbmemleakparse', 'mmadquery', 'mmsdrcli', 'mmccr', 'mmcesobjchstoragepolicy', 'mmcesnfschcfg', 'tswatchmonitor', 'mmmigratefs', 'mmputacl', 'mmlscluster', 'commonsnap.py', 'mmcesservice', 'mmadddisk', 'tslsmgr', 'tssbrindex', 'mmafmlocal', 'mmlsperfdata', 'mmnfsuninstall', 'mmcmi', 'mmcesobjs3', 'tspcachescan', 'mmlsnsd', 'mmchcluster', 'mmunmount', 'mmnfsquorumloss', 'mmcesnetdeladdress', 'mmlsquota', 'mmces', 'pymmcesnfsfuncs.py', 'tsputacl', 'mmchqos', 'tsprshowfence', 'gpfsrunlevel', 'mmimgbackup', 'mmsdrrestore', 'tsqosnice', 'mmsdrserv', 'mmmsgqueue', 'mmcesmmcdelexport', 'mmlinkfileset', 'mmrestoreconfig', 'mmdelnodeclass', 'mmsmbfuncs', 'lxtrace-4.14.0-115.21.2.el7a.ppc64le', 'mmcesobjcfgman', 'mmfixcfg', 'mmcesnfslsexport', 'tsdbmemleak', 'mmaudit', 'mmcesnfslscfg', 'mmsmbsupportedoptions', 'mmafmconfig', 'mmlscallback', 'mmlsmgr', 'tsbackup', 'mmcesminfuncs', 'mmfsmount', 'mmcesmmcchexport', 'tsrestripefile', 'kdump', 'mmimportfs', 'mmcesobjcrring', 'mmnfs', 'mmcommon', 'mmcesnetmvaddress', 'mmsnmpagentd', 'mmcesobjfuncs', 'gui.callhome.py', 'tsbackup33', 'lxtrace', 'mmsdrfsdef', 'mmsmb', 'mmobj', 'tsprclear', 'mmceshdfsfuncs', 'mmcesnetworkmonitor', 'tspcacheutil', 'mmqos', 'mmlspolicy', 'mmrestripefs', 'mmcessmbfuncs', 'mmaddnode', 'mmblock', 'mmcrfs', 'mmmount', 'tsprreadres', 'mmnsddiscover', 'mmprotocoltrace', 'mmglobfuncs', 'tsprreadkeys', 'mmnfsdown', 'gpfs.snap', 'object.snap.py', 'mmcesnetaddaddress', 'mmcesobjchcfg', 'mmrsh', 'mmcesobjmr', 'mmeditacl', 'auditConsumerManager', 'mmlsconfig', 'mmsync', 'mmgetacl', 'mmcesuserauthrmservice', 'mmhealth', 'tsdelacl', 'mmremote', 'mmpercentencode', 'mmcloudfuncs', 'daemonize', 'mmcesnfschexport', 'tsclone', 'callhome.snap.py', 'clstrwatchreplaymanager', 'tsnetverify', 'mmstartup', 'mmcachectl', 'mmgskkm', 'mmdefragfs', 'mmsnapdir', 'tsapolicy', 'mmrcmd', 'mmexpelnode', 'mmsdrquery', 'ece.callhome.py', 'mmchdisk', 'mmcesnetdown', 'mmlslicense', 'mmrestripefile', 'mmcrfileset', 'mmnfscleanup', 'kdump-4.14.0-115.21.2.el7a.ppc64le', 'mmlogmsg', 'mmcessmbexportacl', 'mmchlicense', 'mmsetrcmd', 'tsclwatchrules', 'mmdynamicmap', 'tssetquota', 'tsprreserve', 'wftopics', 'mmvaryonvg', 'mmsnmpagentd10', 'mmbackupconfig', 'mmdefquotaon', 'mmlsattr', 'mmcesfuncs', 'mmfsadm', 'mmcesmmccrexport', 'runmmfs', 'mmafmcmd', 'ccrrestore', 'mmunlinkfileset', 'basicsnap.py', 'mmafmhomeconfig', 'auth.snap.py', 'fab3.snap.py', 'mmuserauth', 'object.callhome.py', 'mmlogsort', 'mmdf', 'mmcesobjcrstoragepolicy', 'mmdefquotaoff', 'mmtracectl', 'mmdump', 'tsprquery', 'mmfsenv', 'mmfsfuncs', 'mmrepquota', 'mmcesdr', 'mmcesnode', 'tslsquota', 'mmdsm', 'mmdelnsd', 'mmnfsinit', 'mmcrsnapshot', 'mmlockf', 'mmcesauthfuncs', 'network.callhome.py', 'mmglobfuncs.Linux', 'tsprinquiry', 'nfs.snap.py', 'mmcesnetlsaddress', 'mmapplypolicy', 'mmdumpkthreads', 'tswatchgpfsconduit', 'mmcessmbchconfig', 'perfmon.callhome.py', 'mmauditpreunmount', 'mmrcp', 'scpwrap', 'mmremotefs', 'tsunlinkfileset', 'mmcrcluster', 'mmnfspreunmount', 'mmcessmbchexport', 'tsauditconsumer', 'mmchattr', 'mmdeldisk', 'mmfsck', 'smb.snap.py', 'mmcesobjdepstoragepolicy', 'mmcheckquota', 'mmprodname', 'mmdelfs', 'mmcallhremote', 'mmgetstate', 'mmcesuserauthlsservice', 'mmcesnetup', 'mmremotecluster', 'tsstarthelper', 'mmcloudgateway', 'mmgetconfdata', 'tschpolicy', 'mmchmgr', 'mmcesnetchaddress', 'mmsmbvalidoptions', 'mmchfileset', 'mmwatch', 'tsprregister', 'mmstartpolicy', 'hadoop.snap.py', 'mmquotaoff', 'mmcesmonitor', 'mmquotaon', 'msgqueueservicesmonitormanager', 'mmlspool', 'mmlsmount', 'mmccrmonitor', 'mmbackup', 'mmlsnodeclass', 'mmrefresh', 'mmnfsrecovernode', 'mmpercentdecode', 'wftopichk', 'tspcachesnapdiff', 'mmdiag', 'mmlssnapshot', 'mmcesobjlsstoragepolicy', 'mmafmctl', 'mmstatdcallout', 'mmksh', 'sshscpwrap'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.sourceControl 0.013525 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Running Executable WITHOUT threads to time it out Executing: ['git', 'describe', '--match=v*'] stdout: v3.13.5-2949-g7143f94 Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 7143f945c7623a75a7aeef16cd5fc9593c98c6dd Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2020-09-21 11:07:48 -0400 Running Executable WITHOUT threads to time it out Executing: ['git', 'branch'] stdout: adams/feature-dmplex-coloring adams/feature-mat-cuda * adams/plex-noprealloc-fix master Defined "VERSION_GIT" to ""v3.13.5-2949-g7143f94"" Defined "VERSION_DATE_GIT" to ""2020-09-21 11:07:48 -0400"" Defined "VERSION_BRANCH_GIT" to ""adams/plex-noprealloc-fix"" child PETSc.options.petscclone 0.792566 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: arch-summit-opt-gnu-cuda-omp/lib/petsc/conf/configure-hash Deleting configure hash file: arch-summit-opt-gnu-cuda-omp/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-summit-opt-gnu-cuda-omp/lib/petsc/conf/configure-hash child PETSc.options.arch 0.163728 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/installDir.py:39) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/gpfs/alpine/world-shared/geo127/petsc/opt-gcc-int64-cuda-omp" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/installDir.py:85) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/installDir.py:78) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/installDir.py:62) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/installDir.py:98) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.021560 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000309 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000863 ================================================================================ TEST printEnvVariables from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1878) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1878) **** printenv **** LMOD_FAMILY_MPI=spectrum-mpi XL_LINKER=/sw/summit/xalt/1.2.0/bin/ld __LMOD_REF_COUNT_MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-awz2q5b/gcc/6.4.0:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:1;/sw/summit/modulefiles/core:1 LMOD_SETTARG_FULL_SUPPORT=no PAMI_IBV_ADAPTER_AFFINITY=1 CUDA_DIR=/sw/summit/cuda/10.1.243 SHELL=/bin/bash LMOD_MPI_VERSION=10.3.1.2-20200121-awz2q5b HISTSIZE=100 OLCF_FAMILY_MPI=spectrum-mpi MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/share/man:/sw/summit/gcc/6.4.0/share/man:/sw/summit/cuda/10.1.243/doc/man:/sw/sources/hpss/man:/sw/summit/lmod/8.2.10/share/man:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man::/opt/puppetlabs/puppet/share/man XDG_RUNTIME_DIR=/run/user/62983 PYTHONPATH=/sw/summit/xalt/1.2.0/site:/sw/summit/xalt/1.2.0/libexec __LMOD_REF_COUNT_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1 LMOD_FAMILY_COMPILER_VERSION=6.4.0 __LMOD_REF_COUNT_CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43:1 __Init_Default_Modules=1 XDG_SESSION_ID=3669 LMOD_FAMILY_COMPILER=gcc OLCF_LMOD_ROOT=/sw/summit OMPI_FC=gfortran HOSTNAME=login3 JSM_JSRUN_NO_WARN_TOPOLOGY=1 DDT_HOME=/sw/summit/forge/20.0.1 _ModuleTable002_=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 PETSC_ARCH=arch-summit-opt-gnu-cuda-omp MAIL=/var/spool/mail/adams 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OMPI_MCA_io=romio321 __LMOD_REF_COUNT_MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/share/man:1;/sw/summit/gcc/6.4.0/share/man:1;/sw/summit/cuda/10.1.243/doc/man:1;/sw/sources/hpss/man:1;/sw/summit/lmod/8.2.10/share/man:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man:1;/opt/puppetlabs/puppet/share/man:1 KOKKOS_DIR=/autofs/nccs-svm1_home1/adams/spack/opt/spack/linux-rhel7-power9le/gcc-6.4.0/kokkos-3.1-vbeupbse2umbjtu2wmiju7uc5acne3mh OLCF_NETLIB_LAPACK_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm OLCF_CUDA_ROOT=/sw/summit/cuda/10.1.243 LESSOPEN=||/usr/bin/lesspipe.sh %s LSF_BINDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin _ModuleTable008_=ZmlsZXMvY29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvc3cvc3VtbWl0L21vZHVsZWZpbGVzL3NpdGUvbGludXgtcmhlbDctcHBjNjRsZS9Db3JlOi9zdy9zdW1taXQvbW9kdWxlZmlsZXMvY29yZSIsfQ== CPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/include:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include:/sw/summit/cuda/10.1.243/include USER=adams LSF_ENVDIR=/opt/ibm/spectrumcomputing/lsf/conf PAMI_ENABLE_STRIPING=0 PS1=\A\[\033[;1m\]\[\033[35m\]$(ret=$?; [ $ret -ne 0 ] && echo -n " $ret")\[\033[;0m\] \[\033[34m\]$(__git_ps1 '%s') \[\033[32m\]\w\[\033[0m\]\$ OLCF_SPECTRUM_MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb __LMOD_REF_COUNT_LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:1;/sw/summit/gcc/6.4.0/lib64:1;/sw/summit/cuda/10.1.243/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib:1 SHLVL=1 __LMOD_REF_COUNT_ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/share/aclocal:1 DISPLAY=localhost:26.0 OLCF_FAMILY_COMPILER=gcc PETSC_DIR=/ccs/home/adams/petsc OPAL_PREFIX=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb LMOD_FAMILY_MPI_VERSION=10.3.1.2-20200121 MODULESHOME=/sw/summit/lmod/8.2.10 XALT_ETC_DIR=/sw/summit/xalt/1.2.0/etc _ModuleTable007_=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 __LMOD_REF_COUNT_PKG_CONFIG_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/pkgconfig:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/pkgconfig:1 _ModuleTable001_=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 __LMOD_REF_COUNT_PYTHONPATH=/sw/summit/xalt/1.2.0/site:1;/sw/summit/xalt/1.2.0/libexec:1 LMOD_VERSION=8.2.10 PAMI_CUDA_AWARE_THRESH=320000 PKG_CONFIG_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64/pkgconfig:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/pkgconfig BASH_ENV=/sw/summit/lmod/8.2.10/init/bash __LMOD_REF_COUNT_PATH=/sw/sources/lsf-tools/2.0/summit/bin:2;/sw/summit/xalt/1.2.0/bin:1;/sw/summit/forge/20.0.1/bin:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin:1;/sw/summit/gcc/6.4.0/bin:1;/sw/summit/cuda/10.1.243/bin:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin:1;/sw/sources/hpss/bin:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin:1;/opt/ibm/csm/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/opt/ibm/flightlog/bin:1;/opt/ibutils/bin:1;/opt/ibm/spectrum_mpi/jsm_pmix/bin:1;/opt/puppetlabs/bin:1;/usr/lpp/mmfs/bin:1 _=../arch-summit-opt-gnu-cuda-omp.py MODULEPATH=/autofs/nccs-svm1_sw/summit/modulefiles/site/linux-rhel7-ppc64le/spectrum-mpi/10.3.1.2-20200121-awz2q5b/gcc/6.4.0:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core:/sw/summit/modulefiles/core SSH_CONNECTION=160.91.202.153 35298 128.219.134.73 22 OMP_NUM_THREADS=1 OLCF_FAMILY_MPI_VERSION=10.3.1.2-20200121 AUTOGEN_PARALLEL=1 LMOD_MPI_NAME=spectrum-mpi _LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.18.2.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/gcc/6.4.0.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/spectrum-mpi/10.3.1.2-20200121.lua:/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/netlib-lapack/3.8.0.lua:/sw/summit/modulefiles/core/forge/20.0.1 OMPI_CXX=g++ __LMOD_REF_COUNT_LOADEDMODULES=hsi/5.0.2.p5:1;xalt/1.2.0:1;lsf-tools/2.0:1;darshan-runtime/3.1.7:1;DefApps:1;cmake/3.18.2:1;cuda/10.1.243:1;gcc/6.4.0:1;spectrum-mpi/10.3.1.2-20200121:1;netlib-lapack/3.8.0:1;forge/20.0.1:1 LMOD_DIR=/sw/summit/lmod/8.2.10/libexec GIT_PS1_SHOWDIRTYSTATE=1 PAMI_IBV_ENABLE_DCT=1 LMOD_PKG=/sw/summit/lmod/8.2.10 MODULEPATH_ROOT=/sw/summit/modulefiles HOME=/ccs/home/adams LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:/sw/summit/gcc/6.4.0/lib64:/sw/summit/cuda/10.1.243/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib LSF_SERVERDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc CUDAPATH=/sw/summit/cuda/10.1.243 LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib LMOD_SYSTEM_NAME=summit __LMOD_REF_COUNT__LMFILES_=/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/hsi/5.0.2.p5.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/xalt/1.2.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/lsf-tools/2.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/darshan-runtime/3.1.7.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/DefApps.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cmake/3.18.2.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/cuda/10.1.243:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/Core/gcc/6.4.0.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/spectrum-mpi/10.3.1.2-20200121.lua:1;/sw/summit/modulefiles/site/linux-rhel7-ppc64le/gcc/6.4.0/netlib-lapack/3.8.0.lua:1;/sw/summit/modulefiles/core/forge/20.0.1:1 GIT_PS1_SHOWUPSTREAM=auto CUDA_TOOLKIT_ROOT_DIR=/sw/summit/cuda/10.1.243 _ModuleTable_Sz_=8 OLCF_MODULEPATH_ROOT=/sw/summit/modulefiles OMPI_CC=gcc __LMOD_REF_COUNT_CPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/include:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include:1;/sw/summit/cuda/10.1.243/include:1 LMOD_CMD=/sw/summit/lmod/8.2.10/libexec/lmod PROJWORK=/gpfs/alpine/proj-shared _ModuleTable005_=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 BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } XLSF_UIDDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib/uid OLCF_DARSHAN_RUNTIME_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OLCF_GCC_ROOT=/sw/summit/gcc/6.4.0 SSH_TTY=/dev/pts/100 CVS_RSH=ssh _ModuleTable006_=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 OLDPWD=/ccs/home/adams PAMI_IBV_ENABLE_OOO_AR=1 OMPI_LD_PRELOAD_PREPEND=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/lib/libdarshan.so LMOD_SYSTEM_DEFAULT_MODULES=DefApps SSH_CLIENT=160.91.202.153 35298 22 LOGNAME=adams ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/share/aclocal PATH=/sw/sources/lsf-tools/2.0/summit/bin:/sw/summit/xalt/1.2.0/bin:/sw/summit/forge/20.0.1/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin:/sw/summit/gcc/6.4.0/bin:/sw/summit/cuda/10.1.243/bin:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin:/sw/sources/hpss/bin:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc:/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin:/opt/ibm/csm/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibm/flightlog/bin:/opt/ibutils/bin:/opt/ibm/spectrum_mpi/jsm_pmix/bin:/opt/puppetlabs/bin:/usr/lpp/mmfs/bin TERM=xterm-256color CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43 OPAL_LIBDIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib MEMBERWORK=/gpfs/alpine/scratch/adams LSF_LIBDIR=/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib OLCF_CMAKE_ROOT=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna _ModuleTable003_=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 XALT_OLCF=1 __LMOD_Priority_PATH=/sw/sources/lsf-tools/2.0/summit/bin:-9999;/sw/summit/xalt/1.2.0/bin:-9999 OMPI_DIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb OLCF_FAMILY_COMPILER_VERSION=6.4.0 BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@") } PAMI_IBV_QP_SERVICE_LEVEL=8 MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb WORLDWORK=/gpfs/alpine/world-shared LMOD_sys=Linux LOADEDMODULES=hsi/5.0.2.p5:xalt/1.2.0:lsf-tools/2.0:darshan-runtime/3.1.7:DefApps:cmake/3.18.2:cuda/10.1.243:gcc/6.4.0:spectrum-mpi/10.3.1.2-20200121:netlib-lapack/3.8.0:forge/20.0.1 LMOD_ROOT=/sw/summit/lmod HISTCONTROL=ignoredups PWD=/ccs/home/adams/petsc _ModuleTable004_=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 BINARY_TYPE_HPC= OLCF_HSI_ROOT=/sw/sources/hpss ================================================================================ TEST resetEnvCompilers from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1885) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1885) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1915) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1915) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1848) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1848) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1869) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1869) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:479) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:479) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPCCFLAGS to Initialized HIPCCFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPCC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:660) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:660) Locate a functional C compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.0/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "CC" to "mpicc" All intermediate test results are stored in /tmp/petsc-hp5ZuT All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.setCompilers Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Testing executable /tmp/petsc-hp5ZuT/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-hp5ZuT/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-hp5ZuT/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpicc --version stdout: gcc (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ================================================================================ TEST checkCPreprocessor from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:699) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:699) Locate a functional C preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.0/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkCUDACompiler from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:735) Locate a functional CUDA compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.0/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2019 NVIDIA Corporation Built on Sun_Jul_28_19:07:52_PDT_2019 Cuda compilation tools, release 10.1, V10.1.243 ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:775) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:775) Locate a functional CUDA preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.0/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "CUDAPP" to "nvcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include __global__ void testFunction() {return;}; Running Executable WITHOUT threads to time it out Executing: nvcc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkHIPCompiler from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:809) TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:809) Locate a functional HIP compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hipcc...not found Checking for program /sw/summit/xalt/1.2.0/bin/hipcc...not found Checking for program /sw/summit/forge/20.0.1/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hipcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/hipcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hipcc...not found Checking for program /sw/sources/hpss/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hipcc...not found Checking for program /opt/ibm/csm/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/hipcc...not found Checking for program /opt/ibutils/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hipcc...not found Checking for program /opt/puppetlabs/bin/hipcc...not found Checking for program /usr/lpp/mmfs/bin/hipcc...not found Checking for program /ccs/home/adams/petsc/lib/petsc/bin/win32fe/hipcc...not found Unable to find programs ['hipcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['bsub', 'bjob', 'showusage', 'test_bsub'] ['mpirun', 'jsrun', 'ld', 'xalt_helper_functions.sh'] ['ddt-debugger-mps', 'ddt', 'ddt-debugger', 'allinea-client', 'ddt-mpirun', 'forge-probe', 'forge', 'make-profiler-libraries', 'ddt-debugger-ll', 'map', 'ddt-client'] ['shmemrun', 'profile2mat.pl', 'oshrun', 'oshmem_info', 'orterun', 'orted', 'orte-server', 'orte-info', 'orte-clean', 'ompi_info', 'ompi-server', 'ompi-clean', 'mpitool', 'mpirun', 'mpijob', 'mpiexec', 'jumpshot', 'get_nl_setting', 'efix', 'alias.pl', 'aggregate_profile.pl', 'stock', 'shmemfort', 'shmemcxx', 'shmemcc', 'shmemc++', 'shmemCC', 'oshfort', 'oshcxx', 'oshcc', 'oshc++', 'oshCC', 'ortecc', 'opal_wrapper', 'mpixlf', 'mpixlc', 'mpixlC', 'mpipgifort', 'mpipgicc', 'mpipgic++', 'mpifort', 'mpif90', 'mpif77', 'mpicxx', 'mpicc', 'mpic++', 'mpiCC', 'mpip-jsrun'] ['g++', 'c++', 'powerpc64le-none-linux-gnu-g++', 'powerpc64le-none-linux-gnu-c++', 'gfortran', 'powerpc64le-none-linux-gnu-gfortran', 'gcj', 'powerpc64le-none-linux-gnu-gcj', 'jcf-dump', 'gcov', 'gcov-tool', 'gcov-dump', 'cpp', 'gcc', 'powerpc64le-none-linux-gnu-gcc-6.4.0', 'gcc-ar', 'powerpc64le-none-linux-gnu-gcc', 'powerpc64le-none-linux-gnu-gcc-ar', 'gcc-nm', 'powerpc64le-none-linux-gnu-gcc-nm', 'gcc-ranlib', 'powerpc64le-none-linux-gnu-gcc-ranlib', 'jv-convert', 'gij', 'grmic', 'grmiregistry', 'gcj-dbtool', 'gappletviewer', 'gjarsigner', 'gkeytool', 'gjar', 'gcjh', 'gjavah', 'gnative2ascii', 'gorbd', 'grmid', 'gserialver', 'gtnameserv', 'gc-analyze', 'rebuild-gcj-db', 'aot-compile'] ['cuobjdump', 'cuda-gdb', 'cuda-gdbserver', 'gpu-library-advisor', 'cuda-memcheck', 'nsight', 'nsight_ee_plugins_manage.sh', 'nv-nsight-cu-cli', 'bin2c', 'crt', 'cudafe++', 'fatbinary', 'nvcc', 'nvcc.profile', 'nvlink', 'ptxas', 'nvdisasm', 'nvprof', 'nvprune', 'computeprof', 'nvvp', 'cuda-install-samples-10.1.sh'] ['ccmake', 'cmake', 'ctest', 'cpack'] ['darshan-mk-log-dirs.pl', 'darshan-gen-cc.pl', 'darshan-gen-cxx.pl', 'darshan-gen-fortran.pl', 'darshan-config'] ['htar', '5.0.2.9', '6.0.0.11', '5.0.2.11', 'hsi', '6.2.0.1', '6.3', '6.3.1', 'TA_Status', 'test_TA'] ['esub', 'esub.poe', 'pim', 'lsf_daemons', 'rla', 'elim.jsdl', 'named', 'esub.tv', 'esub.openmp', 'esub.mvapich', 'esub.dprov', 'sbatchd', 'esub.bproc', 'esub.openmpi', 'esub.oldtvpoe', 'esub.mpichp4', 'elim.frequency', 'esub.tvlammpi', 'esub.oldpoe', 'lim', 'esub.ls_dyna', 'esub.tvmpich_gm', 'esub.fluent', 'nios', 'esub.gold', 'esub.mpich_gm', 'esub.pvm', 'esub.intelmpi', 'esub.mpich_mx', 'eauth.krb5', 'res', 'tmp.elim.sa', 'eauth', 'esub.tvpoe', 'mesub', 'esub.mpich2', 'melim', 'esub.lammpi'] ['brsvjob', 'lspasswd', 'bmgroup', 'bpost', 'btop', 'bclusters', 'lsplace', 'bjdepinfo', 'lsreghost', 'brsvs', 'bparams', 'bgadd', 'lsrun', 'lsload', 'breconfig', 'lsfrestart', 'bconf', 'bmod', 'bsub', 'lsunlockhost', 'bmodify', 'bread', 'bacct', 'lsfrsv', 'lsgrun', 'bslots', 'bapp', 'bjobs', 'lsmail', 'lsfstartup', 'lsmake4', 'lslockhost', 'lsfshutdown', 'bpeek', 'lsrun.sh', 'lslogin', 'bimages', 'bchkpnt', 'bwait', 'lsfhadoop.sh', 'bsla', 'brsvmod', 'lsrtasks', 'blimits', 'busers', 'bresources', 'bqueues', 'brequeue', 'bmg', 'lsrcp', 'lseligible', 'lshosts', 'lsloadadj', 'breboot', 'lsacct', 'lsclusters', 'bugroup', 'lsltasks', 'lsadmin', 'bstatus', 'bgbroker', 'bgdel', 'bentags', 'lsportcheck', 'brsvsub', 'lsf-start-spark.sh', 'bqc', 'bhpart', 'lsf-spark-shell.sh', 'lsmakerm', 'lsf-spark-submit.sh', 'brestart', 'bswitch', 'bjgroup', 'lsreconfig', 'lammpirun_wrapper', 'lsf-stop-spark.sh', 'badmin', 'bbot', 'bstop', 'lsinfo', 'brun', 'bhist', 'bhosts', 'bgmod', 'brsvadd', 'bkill', 'brlainfo', 'brsvdel', 'xagent', 'bresize', 'bmig', 'lsmon', 'lsid', 'bgpinfo', 'lsmake', 'bresume', 'blaunch', 'lsacctmrg'] ['csm_bb_vg_create', 'csm_node_find_job', 'csm_cluster_query_state', 'csm_allocation_create', 'csm_ib_cable_update', 'csm_allocation_query_active_all', 'csm_bb_lv_delete', 'csm_allocation_update_state', 'csm_switch_attributes_update', 'csm_soft_failure_recovery', 'csm_diag_run_query', 'csm_allocation_step_begin', 'csm_bb_vg_delete', 'csm_node_attributes_query_history', 'csm_allocation_query_details', 'csm_node_attributes_query_details', 'csm_diag_run_query_details', 'csm_ras_event_create', 'csm_diag_run_begin', 'csm_node_resources_query_all', 'csm_allocation_query', 'csm_ras_event_query_allocation', 'csm_switch_attributes_query', 'csm_node_attributes_query', 'csm_switch_attributes_query_details', 'csm_infrastructure_health_check', 'csm_node_attributes_update', 'csm_ras_msg_type_create', 'csm_ras_msg_type_delete', 'csm_ras_msg_type_query', 'csm_node_query_state_history', 'csm_switch_attributes_query_history', 'csm_allocation_step_query_active_all', 'csm_bb_lv_create', 'csm_node_resources_query', 'csm_allocation_delete', 'csm_ras_event_query', 'csm_allocation_resources_query', 'csm_diag_result_create', 'csm_node_delete', 'csm_ras_msg_type_update', 'csm_bb_vg_query', 'csm_ib_cable_query_history', 'csm_diag_run_end', 'csm_allocation_step_query', 'csm_allocation_step_query_details', 'csm_allocation_update_history', 'csm_allocation_step_end', 'csm_ib_cable_query', 'csm_jsrun_cmd', 'csm_bb_lv_query'] [] ['sview', 'strigger', 'sstat', 'sshare', 'srun', 'sreport', 'squeue', 'sprio', 'smap', 'sinfo', 'sgather', 'sdiag', 'scontrol', 'scancel', 'sbcast', 'sbatch', 'sattach', 'salloc', 'sacctmgr', 'sacct', 'jobsub', 'jobstat', 'ctags', 'diffstat', 'rpmsign', 'swig', 'ccache-swig', 'ocs', 'cscope-indexer', 'cscope', 'doxygen', 'unwrapdiff', 'splitdiff', 'rediff', 'recountdiff', 'lsdiff', 'interdiff', 'grepdiff', 'flipdiff', 'fixcvsdiff', 'filterdiff', 'espdiff', 'editdiff', 'dehtmldiff', 'combinediff', 'yacc', 'byacc', 'indent', 'rlog', 'rcsmerge', 'rcsfreeze', 'rcsdiff', 'rcsclean', 'rcs', 'merge', 'ident', 'co', 'ci', 'svnversion', 'svnsync', 'svnserve', 'svnrdump', 'svnlook', 'svndumpfilter', 'svnadmin', 'svn', 'intltoolize', 'intltool-update', 'intltool-prepare', 'intltool-merge', 'intltool-extract', 'gettextize', 'autopoint', 'stap-report', 'stapsh', 'staprun', 'stap-merge', 'stap-prep', 'stap', 'screen', 'rhn_register', 'whiptail', 'subscription-manager', 'rhsmcertd', 'rhsm-debug', 'rct', 'consolehelper', 'pyinotify', 'easy_install-2.7', 'easy_install', 'snmpwalk', 'snmpvacm', 'snmpusm', 'snmptrap', 'snmptranslate', 'snmptls', 'snmptest', 'snmptable', 'snmpstatus', 'snmpset', 'snmpnetstat', 'snmpinform', 'snmpgetnext', 'snmpget', 'snmpdf', 'snmpdelta', 'snmpbulkwalk', 'snmpbulkget', 'encode_keychange', 'chardetect', 'atopsar', 'atopd', 'atopconvert', 'atop', 'abrt-dump-oops', 'abrt-action-save-kernel-data', 'abrt-action-analyze-oops', 'abrt-action-trim-files', 'abrt-action-perform-ccpp-analysis', 'abrt-action-list-dsos', 'abrt-action-install-debuginfo', 'abrt-action-generate-core-backtrace', 'abrt-action-generate-backtrace', 'abrt-action-analyze-vulnerability', 'abrt-action-analyze-core', 'abrt-action-analyze-ccpp-local', 'abrt-action-analyze-c', 'abrt-action-analyze-backtrace', 'abrt-watch-log', 'abrt-handle-upload', 'abrt-action-save-package-data', 'abrt-action-notify', 'abrt-action-analyze-xorg', 'reporter-ureport', 'reporter-rhtsupport', 'libtar', 'satyr', 'git', 'git-receive-pack', 'git-upload-archive', 'git-upload-pack', 'git-shell', 'lex', 'tset', 'pk12util', 'as', 'lpr.cups', 'speaker-test', 'manpath', 'hwloc-gather-topology', 'hwloc-calc', 'rev', 'snmpconf', 'sctp_darn', 'trust', 'nm', 'fc-pattern', 'ucs2any', 'zforce', 'groups', 'gunzip', 'tracepath', 'rdma_xclient', 'unalias', 'db_upgrade', 'dbus-uuidgen', 'uuidgen', 'uname', 'df', 'fc-match', 'evim', 'schemagen', 'sessreg', 'rdoc', 'gdbus-codegen', 'perl', 'perl5.16.3', 'egrep', 'mlxcables', 'recode-sr-latin', 'pkcheck', 'GET', 'rvim', 'addr2line', 'gsdj500', 'rpmbuild', 'amixer', 'unexpand', 'ypchsh', 'yppasswd', 'ypchfn', 'install', 'cancel.cups', 'msggrep', 'mwm', 'gcc-nm', 'remunge', 'ibgenperm', 'thumbpdf', 'nsenter', 'clean-binary-files', 'httpcfg', 'mlnx_dump_parser', 'ghci', 'autoexpect', 'ntpstat', 'texluac', 'dtestsrq', 'lz4cat', 'pkttyagent', 'python2', 'pkla-admin-identities', 'hpc', 'tail', 'size', 'fc-query', 'mkluatexfontdb', 'dbus-cleanup-sockets', 'nisdomainname', 'ldapurl', 'xsd', 'startx', 'crash', 'mcdiff', 'make', 'gslp', 'mktexfmt', 'pmafm', 'xdg-desktop-icon', 'ldappasswd', 'csh', 'printenv', 'vncconfig', 'wqdump_ext', 'gendiff', 'mst_cable', 'X', 'mstvpd', 'zmore', 'db_hotbackup', 'signver', 'systemctl', 'amsvis', 'tbl', 'xmessage', 'servertool', 'sn', 'embedspu', 'rview', 'nohup', 'grops', 'geoipupdate', 'xfd', 'rm', 'infotocap', 'pwscore', 'eu-objdump', 'mysql', 'mailq.postfix', 'ptx', 'systemd-loginctl', 'mstop', 'rxe_cfg', 'ar', 'ccrewrite', 'diff-jars', 'python', 'pmsocks', 'migspeed', 'xmbind', 'objcopy', 'alias', 'dos2unix', 'ca-legacy', 'tclsh', 'ofed_rpm_info', 'hwloc-assembler-remote', 'vimtutor', 'lprm', 'pygtk-demo', 'jjs', 'prtstat', 'seq', 'col', 'pdcp', 'eu-strip', 'ib_acme', 'resourcedump', 'dirname', 'fc-cache-64', 'lesskey', 'date', 'basename', 'grep', 'geoiplookup6', 'ssh-copy-id', 'xterm', 'svcutil', 'libpng-config', 'dvilualatex', 'db_load', 'systemd-notify', 'dracut', 'texconfig', 'haddock', 'xrandr', 'umount', 'xdg-mime', 'prlimit', 'ucx_info', 'infokey', 'pstree.x11', 'mono-test-install', 'write', 'geqn', 'xdg-screensaver', 'glib-mkenums', 'sudoedit', 'mst', 'ghc-pkg-7.6.3', 'wall', 'dgawk', 'ibv_polldcinfo', 'ppc64le-redhat-linux-gcc', 'gcc', 'xzcat', 'simpdftex', 'cvsbug', 'pdflatex', 'mlxburn', 'ping', 'column', 'fc-cache', 'pinentry-curses', 'pmlogextract', 'scp', 'stdbuf', 'mlxcables_ext', 'renice', 'file', 'raw_ethernet_bw', 'msguniq', 'appletviewer', 'pdf2dsc', 'mlxpci', 'dig', 'gem', 'coredumpctl', 'eu-size', 'conjure', 'mlnx_conf_mgr.sh', 'alsaunmute', 'command', 'cd', 'sha1sum', 'xsltproc', 'hp2ps', 'erb', 'update-desktop-database', 'gtk-update-icon-cache', 'crontab', 'icewm', 'mktexmf', 'whoami', 'ttmkfdir', 'uxterm', 'ucx_perftest', 'ibcongest', 'mlnx_perf', 'funzip', 'ghc', 'pkg-config', 'nvidia-persistenced', 'unzipsfx', 'bootctl', 'fc-conflist', 'pango-querymodules-64', 'splain', 'curl', 'arch', 'xinit', 'pfbtopfa', 'mozroots', 'setsid', 'setterm', 'gr2fonttest', 'wqdump', 'gzexe', 'gtk-launch', 'compare', 'aseqdump', 'cc', 'nvidia-debugdump', 'icesh', 'udevadm', 'lc', 'icehelp', 'gvimdiff', 'taskset', 'xml2-config', 'pkill', 'bzmore', 'mogrify', 'systemd-analyze', 'mkdir', 'lpq.cups', 'libpng15-config', 'mc', 'repstopdf', 'ld', 'ld.bfd', 'systemd-sysv-convert', 'nproc', 'dbpmda', 'cksum', 'psed', 's2p', 'msghack', 'tabs', 'systemd-coredumpctl', 'jmap', 'libtoolize', 'etags.emacs', 'gtester', 'pmie', 'fg', 'ps2pdfwr', 'peekfd', 'ib_atomic_bw', 'preconv', 'dtestx', 'aria_dump_log', 'gpg-error', 'pmtrace', 'allec', 'post-grohtml', 'tree', 'net-snmp-create-v3-user', 'bunzip2', 'zcat', 'xzless', 'lscpu', 'xzmore', 'udaddy', 'alsamixer', 'find2perl', 'dtestcm', 'iconv', 'rpm2cpio', 'desktop-file-edit', 'ps2pdf13', 'ldapexop', 'hwloc-assembler', 'rpmquery', 'ibv_umr', 'chown', 'pdsh', 'gcc-ar', 'pdb2mdb', 'unshare', 'db_replicate', 'nsupdate', 'cpio', 'xmvn-builddep', 'comm', 'dbus-monitor', 'automake-1.13', 'automake', 'eu-stack', 'runghc-7.6.3', 'xgettext', 'chsh', 'eqn', 'gdb', 'lualatex', 'cpupower', 'build-jar-repository', 'gacutil2', 'gawk', 'rftp', 'kpsewhere', 'c99', 'nvidia-smi', 'reset', 'xdg-open', 'zip', 'split', 'mlx_fpga_ext', 'catchsegv', 'ghc-7.6.3', 'keytool', 'aria_chk', 'mlxreg', 'mstregdump', 'alsaucm', 'mlxlink', 'rename', 'chktrust', 'true', 'db_recover', 'mktexlsr', 'xpr', 'skill', 'otflist', 'gfortran', 'gtroff', 'uil', 'jvmjar', 'zgrep', 'elfedit', 'xclipboard', 'passwd', 'prove', 'eu-nm', 'openssl', 'su', 'kibitz', 'kpsestat', 'pgrep', 'printf', 'gtbl', 'ib_read_lat', 'zipdetails', 'gtar', 'jarsigner', 'mysql_find_rows', 'fold', 'gconf-merge-tree', 'munge', 'ln', 'tty', 'uuclient', 'stat', 'chfn', 'find-jar', 'wish', 'pmdiff', 'mkocp', 'lchsh', 'jconsole', 'luit', 'diff', 'rpmdb', 'gcore', 'rsync', 'fc-list', 'dmesg', 'libtool', 'mkfontscale', 'zsoelim', 'mstmcra', 'pod2usage', 'xjc', 'uptime', 'dump2slvl.pl', 'ldapwhoami', 'testrb', 'alsatplg', 'setarch', 'dbus-test-tool', 'msgfmt', 'alsa-delay', 'gview', 'texconfig-dialog', 'ps2pdf14', 'cairo-sphinx', 'sctp_test', 'ps2epsi', 'pmlogconf', 'dwz', 'amidi', 'updmap-sys', 'compile_et', 'man', 'cmp', 'hostnamectl', 'dd', 'tmon', 'vdir', 'pldd', 'sctp_status', 'iceauth', 'getfacl', 'xrdb', 'runhaskell-ghc', 'udpong', 'hwloc-distances', 'sh', 'db_stat', 'ib_write_bw', 'fmt', 'fc-validate', 'mcs', 'ibv_cc_pingpong', 'base64', 'ibv_devinfo', 'ibv_xsrq_pingpong', 'mlxreg_ext', 'sqlite3', 'ps2ps2', 'dapltest', 'tar', 'head', 'ps2pdf', 'ri', 'serialver', 'script', 'pstree', 'msgcomm', 'finger', 'fallocate', 'xzdec', 'whatis', 'gencat', 'perlthanks', 'perlbug', 'xconsole', 'xclock', 'wsdl', 'mlxtrace', 'aclocal', 'aclocal-1.13', 'red', 'readlink', 'unix2mac', 'vim', 'zegrep', 'certutil', 'hwloc-info', 'xinput', 'hwloc-distrib', 'gzip', 'ypcat', 'localedef', 'emacs', 'pmlogsummary', 'mlnx_interface_mgr.sh', 'mysql_config', 'gpgsplit', 'zipinfo', 'unzip', 'updatedb', 'idn', 'systemd-run', 'pwd', 'mailx', 'xzdiff', 'db_dump185', 'wish8.5', 'ibv_devices', 'ls', 'mcedit', 'iptables-xml', 'db_dump', 'unlz4', 'xdg-icon-resource', 'arecord', 'kernel-install', 'otftobdf', 'sqlmetal', 'mysqlslap', 'lp', 'dbus-run-session', 'xcursorgen', 'mremote', 'gsbj', 'ldapadd', 'unpigz', 'pigz', 'ed', 'gss-client', 'ibdiagm.sh', 'm4', 'systemd-path', 'kpsetool', 'cal', 'raw_ethernet_burst_lat', 'mpi-selector', 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'cbq', 'e2image', 'blkdiscard', 'uuserver', 'ifcfg', 'shutdown', 'smtp-source', 'install-info', 'set_nodedesc.sh', 'xfs_repair', 'rsyslogd', 'rpcdebug', 'lvm', 'mkhomedir_helper', 'pvscan', 'logsave', 'pwconv', 'unsquashfs', 'ntp-keygen', 'e2undo', 'blkmapd', 'vgscan', 'osd_login', 'umount.nfs', 'ibcheckerrs', 'rpc.nfsd', 'iblinkinfo', 'ibtracert', 'cfdisk', 'common_irq_affinity.sh', 'modinfo', 'sasldblistusers2', 'rtpr', 'selinuxconlist', 'wrapper', 'blkid', 'ibclearerrors', 'lvmconf', 'xqmstats', 'vgsplit', 'postsuper', 'thin_check', 'filefrag', 'adduser', 'redhat_lsb_trigger.ppc64le', 'dump_lfts.sh', 'drmgr', 'cache_check', 'crond', 'pvchange', 'vendstat', 'setenforce', 'addgnupghome', 'tcpdmatch', 'reboot', 'vipw', 'rpc.gssd', 'cracklib-format', 'perfquery', 'sln', 'pivot_root', 'create-cracklib-dict', 'quotaon', 'groupdel', 'ptp4l', 'mkfs', 'xfs_estimate', 'dmeventd', 'gss-server', 'usernetctl', 'show_counters', 'xfs_ncheck', 'vgchange', 'grpunconv', 'quotastats', 'iptunnel', 'dkms', 'resizepart', 'sysctl_perf_tuning', 'xfs_mkfile', 'repquota', 'ip6tables-restore', 'lusermod', 'wipefs', 'sshd', 'ifdown', 'cache_restore', 'arp', 'pvremove', 'clock', 'tickadj', 'ldconfig', 'selinuxdefcon', 'lvreduce', 'vigr', 'quot', 'vgdisplay', 'lchage', 'arping', 'ibacm', 'ibcheckportstate', 'smparquery', 'insmod', 'addnote', 'lvmetad', 'ibprintca.pl', 'switch_root', 'hwclock', 'kpartx', 'ifstat', 'sysinfo-snapshot.py', 'setsebool', 'edquota', 'killall5', 'pidof', 'anacron', 'service', 'sfdisk', 'vgimport', 'vgrename', 'sm-notify', 'lvmdiskscan', 'lvscan', 'selinuxenabled', 'nologin', 'atd', 'accessdb', 'ibcheckstate', 'userdel', 'lsvio', 'ibnodes', 'weak-modules', 'quotaoff', 'setquota', 'era_invalidate', 'automount', 'xfs_copy', 'sosreport', 'consoletype', 'phc_ctl', 'safe_finger', 'ppc64_cpu', 'mlnx_eswitch_set', 'uesensor', 'rpc.mountd', 'ls-vscsi', 'ibsysstat', 'modprobe', 'ibstatus', 'lgroupadd', 'vgs', 'rtacct', 'pdata_tools', 'telinit', 'setup_mr_cache.sh', 'poweroff', 'lsof', 'slattach', 'visudo', 'ibcheckportwidth', 'update-pciids', 'nscd', 'update_flash', 'smtp-sink', 'mkswap', 'sushell', 'lvmconfig', 'mktree', 'xfs_admin', 'ctstat', 'lvrename', 'ibmirror', 'pam_tally2', 'chkconfig', 'pam_console_apply', 'xfs_io', 'ib2ib_setup', 'nfsdcltrack', 'mksquashfs', 'umount.nfs4', 'arpd', 'rtas_ibm_get_vpd', 'setcap', 'rtas_dbg', 'chroot', 'ibqueryerrors', 'grubby', 'timemaster', 'ibchecknet', 'installkernel', 'vgmerge', 'rpc.idmapd', 'create-munge-key', 'routef', 'mount.nfs', 'pvmove', 'ip6tables', 'postmulti', 'ibnetdiscover', 'key.dns_resolver', 'request-key', 'alsabat-test.sh', 'genhostid', 'ibswportwatch.pl', 'postmap', 'init', 'ibprintswitch.pl', 'ether-wake', 'ifenslave', 'selinux_restorecon', 'fstrim', 'xfs_fsr', 'packer', 'lgroupdel', 'vgcreate', 'mount.nfs4', 'ethtool', 'fsck.cramfs', 'postalias', 'lvextend', 'vgconvert', 'saslpasswd2', 'netreport', 'mkfs.minix', 'cma_roce_mode', 'ibcheckwidth', 'thin_metadata_size', 'faillock', 'thin_rmap', 'ibcheckport', 'pvck', 'postkick', 'ibrouters', 'pvcreate', 'tcpd', 'vgck', 'rpcbind', 'ping6', 'opal-prd', 'thin_delta', 'mii-tool', 'showmount', 'ibccquery', 'devlink', 'set_irq_affinity.sh', 'ibping', 'nfsiostat', 'mlnx_tune', 'hvcsadmin', 'unix_chkpwd', 'getenforce', 'luseradd', 'set_poweron_time', 'semodule', 'convertquota', 'applygnupgdefaults', 'fuser', 'ibccconfig', 'compat_gid_gen'] ['decoder'] ['ibmsquit', 'ibis', 'dump2slvl.pl', 'ibdiagpath', 'IBMgtSim', 'dump2psl.pl', 'ibdmchk', 'mkSimNodeDir', 'ibdiagui', 'ibdiagnet', 'RunSimTest', 'ibdmtr', 'ibtopodiff', 'ibdmsh', 'ibnlparse', 'ibmssh'] ['jsrun', 'jswait', 'jskill', 'query_env', 'export_slurm_env', 'jsm_simulator', 'js_task_info', 'admin', 'jsproxy', 'jslist', 'export_smpi_env', 'jsm', 'stock'] ['hiera', 'facter', 'puppet', 'facter-ng.bat'] ['mmtrace', 'mmsysmon.py', 'mmnfsfuncs', 'mmcesnfsmonitor', 'mmjob', 'mmdelcallback', 'tsdf', 'tschfileset', 'tslsdisk', 'tslspolicy', 'tslsfs', 'tsdelsnapshot', 'tslsfileset', 'tsnsdaccess', 'tscrsnapshot', 'tslspool', 'tssnapdir', 'tsedquota', 'tsusercmd', 'tslssnapshot', 'tsstatus', 'mmcrnsd', 'tsgetscsiinfo', 'mmqosnice', 'mmsetquota', 'mmdelfileset', 'tsprpreemptabort', 'cleanupkeystonedb', 'mmsdrfsdef.Linux', 'mmcesuserauthcrservice', 'mmdumpfilocks', 'tschdisk', 'tsaddpdisk', 'tsctl', 'tskafkaauth', 'tsdbfs', 'tscheckquota', 'tsfsctl', 'tsrpldisk', 'tschpdisk', 'tsrecgroupserver', 'tscmd', 'tsreclaimspace', 'tscrrecgroup', 'tschstoragepool', 'tsrestripefs', 'tsdefragfs', 'tsfileid', 'tsdsh', 'tsdeldisk', 'tsquotaon', 'tschfs', 'tsdefedquota', 'tsunmount', 'tsdelpdisk', 'tsressnapshot', 'tscrvdisk', 'tsquotaoff', 'tsexpelnode', 'tslsvdisk', 'tscrfs', 'tschmgr', 'tslsrecgroup', 'tslsrecoverygroupevents', 'tsdelvdisk', 'tsnsddiscover', 'tsdefquotaoff', 'tscrfileset', 'tsdelfs', 'tsdbvdisk', 'tsdelfileset', 'tsadddisk', 'tscachectl', 'tsdefquotaon', 'tschcarrier', 'tsauth', 'tslsqos', 'tslspdisk', 'tsnsdrediscover', 'tsremount', 'tsdelrecgroup', 'tschpool', 'tsrepquota', 'tschqos', 'tschrecgroup', 'tsfsck', 'tsdiag', 'tssbrff', 'mmlsfileset', 'mmexectsmcmd', 'mmgetkafkaspecinfo', 'mmfs', 'mmchconfig', 'ces.snap.py', 'mmperfmon', 'tsgetacl', 'clstrwatchcallbacks', 'mmcessmblsconfig', 'tslsattr', 'mmcesmonitord', '.links', 'mmnfsgrace', 'mmhelp-apolicy', 'mmpmon', 'mmcesnfsdelexport', 'mmchpolicy', 'gui.snap.py', 'tspcache', 'perfmon.snap.py', 'mmsdrquerydef', 'mmlsqos', 'mmxargs', 'tschattr', 'mmclidecode', 'clstrwatchconsumermanager', 'mmfsctl', 'mmpsnap', 'mmccrnv', 'perf.snap.py', 'mmcespnfsip', 'mmnfsnodeback', 'tsimgrestore', 'mmcesuserauthckservice', 'mmchnodeclass', 'pymmcesnfslsexport.py', 'mmdelacl', 'mmumount', 'mmcrnodeclass', 'mmsysmonc', 'tspcacheevict', 'mmexecvfile', 'sshwrap', 'mmgetifconf', 'mmfs-ppc64-rh4', 'sysmon.snap.py', 'mmimgrestore', 'mmcesobjaccesslinkfset', 'mmchecksubsys', 'mmcesop', 'tspmon', 'mmdefedquota', 'mmdelsnapshot', 'mmreclaimspace', 'mmsysmoncontrol', 'tsspectrumdiscover', 'mmyfields', 'mmchnode', 'mmrestorefs', 'mmcallhome', 'mmexportfs', 'mmcesnfsloadexport', 'tslspool34', 'mmnfsmonitor', 'mmsnmpagentd30', 'tsfindinode', 'mmfsfuncs.Linux', 'mmdumpperfdata', 'mmcesobjcrbase', 'mmdsh', 'objmetric_count.py', 'mmauditmount', 'mmcessmblsexport', 'mmdevdiscover', 'mmlsnode', 'mmautoload', 'mmcesnfscrexport', 'mmchnsd', 'mmfileid', 'mmcesnfsfuncs', 'mmcesrecovernode', 'mmlsfs', 'mmcollectdebugdata', 'tseditacl', 'tsbuhelper', 'tslinkfileset', 'tspreparedisk', 'mmrpldisk', 'mmdelnode', 'mmceslog', 'mmcrfsc', 'mmcesblockfuncs', 'mmgensymtable', 'mmfsd', 'mmnfsinstall', 'mmdspmsg', 'mmclone', 'mmchfs', 'mmlsdisk', 'mmnfstakeover', 'tsyselect', 'mmnfsup', 'mmcessmbcrexport', 'tsaddrmap', 'mmnetverify', 'mmchpool', 'msgqueue.snap.py', 'mmcesobjlscfg', 'tsrestorefileset', 'mmbuildgpl', 'mmsmbman', 'tsfindname', 'mmcesloadmonitor', 'mmcesobjaccess', 'mmaddcallback', 'mmcesobjpolicyfuncs', 'mmcessmbdelexport', 'msgqueueDaemonManager', 'core.snap.py', 'tsgskkm', 'mmauth', 'mmedquota', 'mmshutdown', 'tsdbmemleakparse', 'mmadquery', 'mmsdrcli', 'mmccr', 'mmcesobjchstoragepolicy', 'mmcesnfschcfg', 'tswatchmonitor', 'mmmigratefs', 'mmputacl', 'mmlscluster', 'commonsnap.py', 'mmcesservice', 'mmadddisk', 'tslsmgr', 'tssbrindex', 'mmafmlocal', 'mmlsperfdata', 'mmnfsuninstall', 'mmcmi', 'mmcesobjs3', 'tspcachescan', 'mmlsnsd', 'mmchcluster', 'mmunmount', 'mmnfsquorumloss', 'mmcesnetdeladdress', 'mmlsquota', 'mmces', 'pymmcesnfsfuncs.py', 'tsputacl', 'mmchqos', 'tsprshowfence', 'gpfsrunlevel', 'mmimgbackup', 'mmsdrrestore', 'tsqosnice', 'mmsdrserv', 'mmmsgqueue', 'mmcesmmcdelexport', 'mmlinkfileset', 'mmrestoreconfig', 'mmdelnodeclass', 'mmsmbfuncs', 'lxtrace-4.14.0-115.21.2.el7a.ppc64le', 'mmcesobjcfgman', 'mmfixcfg', 'mmcesnfslsexport', 'tsdbmemleak', 'mmaudit', 'mmcesnfslscfg', 'mmsmbsupportedoptions', 'mmafmconfig', 'mmlscallback', 'mmlsmgr', 'tsbackup', 'mmcesminfuncs', 'mmfsmount', 'mmcesmmcchexport', 'tsrestripefile', 'kdump', 'mmimportfs', 'mmcesobjcrring', 'mmnfs', 'mmcommon', 'mmcesnetmvaddress', 'mmsnmpagentd', 'mmcesobjfuncs', 'gui.callhome.py', 'tsbackup33', 'lxtrace', 'mmsdrfsdef', 'mmsmb', 'mmobj', 'tsprclear', 'mmceshdfsfuncs', 'mmcesnetworkmonitor', 'tspcacheutil', 'mmqos', 'mmlspolicy', 'mmrestripefs', 'mmcessmbfuncs', 'mmaddnode', 'mmblock', 'mmcrfs', 'mmmount', 'tsprreadres', 'mmnsddiscover', 'mmprotocoltrace', 'mmglobfuncs', 'tsprreadkeys', 'mmnfsdown', 'gpfs.snap', 'object.snap.py', 'mmcesnetaddaddress', 'mmcesobjchcfg', 'mmrsh', 'mmcesobjmr', 'mmeditacl', 'auditConsumerManager', 'mmlsconfig', 'mmsync', 'mmgetacl', 'mmcesuserauthrmservice', 'mmhealth', 'tsdelacl', 'mmremote', 'mmpercentencode', 'mmcloudfuncs', 'daemonize', 'mmcesnfschexport', 'tsclone', 'callhome.snap.py', 'clstrwatchreplaymanager', 'tsnetverify', 'mmstartup', 'mmcachectl', 'mmgskkm', 'mmdefragfs', 'mmsnapdir', 'tsapolicy', 'mmrcmd', 'mmexpelnode', 'mmsdrquery', 'ece.callhome.py', 'mmchdisk', 'mmcesnetdown', 'mmlslicense', 'mmrestripefile', 'mmcrfileset', 'mmnfscleanup', 'kdump-4.14.0-115.21.2.el7a.ppc64le', 'mmlogmsg', 'mmcessmbexportacl', 'mmchlicense', 'mmsetrcmd', 'tsclwatchrules', 'mmdynamicmap', 'tssetquota', 'tsprreserve', 'wftopics', 'mmvaryonvg', 'mmsnmpagentd10', 'mmbackupconfig', 'mmdefquotaon', 'mmlsattr', 'mmcesfuncs', 'mmfsadm', 'mmcesmmccrexport', 'runmmfs', 'mmafmcmd', 'ccrrestore', 'mmunlinkfileset', 'basicsnap.py', 'mmafmhomeconfig', 'auth.snap.py', 'fab3.snap.py', 'mmuserauth', 'object.callhome.py', 'mmlogsort', 'mmdf', 'mmcesobjcrstoragepolicy', 'mmdefquotaoff', 'mmtracectl', 'mmdump', 'tsprquery', 'mmfsenv', 'mmfsfuncs', 'mmrepquota', 'mmcesdr', 'mmcesnode', 'tslsquota', 'mmdsm', 'mmdelnsd', 'mmnfsinit', 'mmcrsnapshot', 'mmlockf', 'mmcesauthfuncs', 'network.callhome.py', 'mmglobfuncs.Linux', 'tsprinquiry', 'nfs.snap.py', 'mmcesnetlsaddress', 'mmapplypolicy', 'mmdumpkthreads', 'tswatchgpfsconduit', 'mmcessmbchconfig', 'perfmon.callhome.py', 'mmauditpreunmount', 'mmrcp', 'scpwrap', 'mmremotefs', 'tsunlinkfileset', 'mmcrcluster', 'mmnfspreunmount', 'mmcessmbchexport', 'tsauditconsumer', 'mmchattr', 'mmdeldisk', 'mmfsck', 'smb.snap.py', 'mmcesobjdepstoragepolicy', 'mmcheckquota', 'mmprodname', 'mmdelfs', 'mmcallhremote', 'mmgetstate', 'mmcesuserauthlsservice', 'mmcesnetup', 'mmremotecluster', 'tsstarthelper', 'mmcloudgateway', 'mmgetconfdata', 'tschpolicy', 'mmchmgr', 'mmcesnetchaddress', 'mmsmbvalidoptions', 'mmchfileset', 'mmwatch', 'tsprregister', 'mmstartpolicy', 'hadoop.snap.py', 'mmquotaoff', 'mmcesmonitor', 'mmquotaon', 'msgqueueservicesmonitormanager', 'mmlspool', 'mmlsmount', 'mmccrmonitor', 'mmbackup', 'mmlsnodeclass', 'mmrefresh', 'mmnfsrecovernode', 'mmpercentdecode', 'wftopichk', 'tspcachesnapdiff', 'mmdiag', 'mmlssnapshot', 'mmcesobjlsstoragepolicy', 'mmafmctl', 'mmstatdcallout', 'mmksh', 'sshscpwrap'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/xalt/1.2.0/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/forge/20.0.1/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/opt/rocm/bin/hipcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/opt/rocm/bin/hipcc...not found Checking for program /sw/sources/hpss/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/csm/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibutils/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/puppetlabs/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/lpp/mmfs/bin/opt/rocm/bin/hipcc...not found Checking for program /ccs/home/adams/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found Unable to find programs ['opt/rocm/bin/hipcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['bsub', 'bjob', 'showusage', 'test_bsub'] ['mpirun', 'jsrun', 'ld', 'xalt_helper_functions.sh'] ['ddt-debugger-mps', 'ddt', 'ddt-debugger', 'allinea-client', 'ddt-mpirun', 'forge-probe', 'forge', 'make-profiler-libraries', 'ddt-debugger-ll', 'map', 'ddt-client'] ['shmemrun', 'profile2mat.pl', 'oshrun', 'oshmem_info', 'orterun', 'orted', 'orte-server', 'orte-info', 'orte-clean', 'ompi_info', 'ompi-server', 'ompi-clean', 'mpitool', 'mpirun', 'mpijob', 'mpiexec', 'jumpshot', 'get_nl_setting', 'efix', 'alias.pl', 'aggregate_profile.pl', 'stock', 'shmemfort', 'shmemcxx', 'shmemcc', 'shmemc++', 'shmemCC', 'oshfort', 'oshcxx', 'oshcc', 'oshc++', 'oshCC', 'ortecc', 'opal_wrapper', 'mpixlf', 'mpixlc', 'mpixlC', 'mpipgifort', 'mpipgicc', 'mpipgic++', 'mpifort', 'mpif90', 'mpif77', 'mpicxx', 'mpicc', 'mpic++', 'mpiCC', 'mpip-jsrun'] ['g++', 'c++', 'powerpc64le-none-linux-gnu-g++', 'powerpc64le-none-linux-gnu-c++', 'gfortran', 'powerpc64le-none-linux-gnu-gfortran', 'gcj', 'powerpc64le-none-linux-gnu-gcj', 'jcf-dump', 'gcov', 'gcov-tool', 'gcov-dump', 'cpp', 'gcc', 'powerpc64le-none-linux-gnu-gcc-6.4.0', 'gcc-ar', 'powerpc64le-none-linux-gnu-gcc', 'powerpc64le-none-linux-gnu-gcc-ar', 'gcc-nm', 'powerpc64le-none-linux-gnu-gcc-nm', 'gcc-ranlib', 'powerpc64le-none-linux-gnu-gcc-ranlib', 'jv-convert', 'gij', 'grmic', 'grmiregistry', 'gcj-dbtool', 'gappletviewer', 'gjarsigner', 'gkeytool', 'gjar', 'gcjh', 'gjavah', 'gnative2ascii', 'gorbd', 'grmid', 'gserialver', 'gtnameserv', 'gc-analyze', 'rebuild-gcj-db', 'aot-compile'] ['cuobjdump', 'cuda-gdb', 'cuda-gdbserver', 'gpu-library-advisor', 'cuda-memcheck', 'nsight', 'nsight_ee_plugins_manage.sh', 'nv-nsight-cu-cli', 'bin2c', 'crt', 'cudafe++', 'fatbinary', 'nvcc', 'nvcc.profile', 'nvlink', 'ptxas', 'nvdisasm', 'nvprof', 'nvprune', 'computeprof', 'nvvp', 'cuda-install-samples-10.1.sh'] ['ccmake', 'cmake', 'ctest', 'cpack'] ['darshan-mk-log-dirs.pl', 'darshan-gen-cc.pl', 'darshan-gen-cxx.pl', 'darshan-gen-fortran.pl', 'darshan-config'] ['htar', '5.0.2.9', '6.0.0.11', '5.0.2.11', 'hsi', '6.2.0.1', '6.3', '6.3.1', 'TA_Status', 'test_TA'] ['esub', 'esub.poe', 'pim', 'lsf_daemons', 'rla', 'elim.jsdl', 'named', 'esub.tv', 'esub.openmp', 'esub.mvapich', 'esub.dprov', 'sbatchd', 'esub.bproc', 'esub.openmpi', 'esub.oldtvpoe', 'esub.mpichp4', 'elim.frequency', 'esub.tvlammpi', 'esub.oldpoe', 'lim', 'esub.ls_dyna', 'esub.tvmpich_gm', 'esub.fluent', 'nios', 'esub.gold', 'esub.mpich_gm', 'esub.pvm', 'esub.intelmpi', 'esub.mpich_mx', 'eauth.krb5', 'res', 'tmp.elim.sa', 'eauth', 'esub.tvpoe', 'mesub', 'esub.mpich2', 'melim', 'esub.lammpi'] ['brsvjob', 'lspasswd', 'bmgroup', 'bpost', 'btop', 'bclusters', 'lsplace', 'bjdepinfo', 'lsreghost', 'brsvs', 'bparams', 'bgadd', 'lsrun', 'lsload', 'breconfig', 'lsfrestart', 'bconf', 'bmod', 'bsub', 'lsunlockhost', 'bmodify', 'bread', 'bacct', 'lsfrsv', 'lsgrun', 'bslots', 'bapp', 'bjobs', 'lsmail', 'lsfstartup', 'lsmake4', 'lslockhost', 'lsfshutdown', 'bpeek', 'lsrun.sh', 'lslogin', 'bimages', 'bchkpnt', 'bwait', 'lsfhadoop.sh', 'bsla', 'brsvmod', 'lsrtasks', 'blimits', 'busers', 'bresources', 'bqueues', 'brequeue', 'bmg', 'lsrcp', 'lseligible', 'lshosts', 'lsloadadj', 'breboot', 'lsacct', 'lsclusters', 'bugroup', 'lsltasks', 'lsadmin', 'bstatus', 'bgbroker', 'bgdel', 'bentags', 'lsportcheck', 'brsvsub', 'lsf-start-spark.sh', 'bqc', 'bhpart', 'lsf-spark-shell.sh', 'lsmakerm', 'lsf-spark-submit.sh', 'brestart', 'bswitch', 'bjgroup', 'lsreconfig', 'lammpirun_wrapper', 'lsf-stop-spark.sh', 'badmin', 'bbot', 'bstop', 'lsinfo', 'brun', 'bhist', 'bhosts', 'bgmod', 'brsvadd', 'bkill', 'brlainfo', 'brsvdel', 'xagent', 'bresize', 'bmig', 'lsmon', 'lsid', 'bgpinfo', 'lsmake', 'bresume', 'blaunch', 'lsacctmrg'] ['csm_bb_vg_create', 'csm_node_find_job', 'csm_cluster_query_state', 'csm_allocation_create', 'csm_ib_cable_update', 'csm_allocation_query_active_all', 'csm_bb_lv_delete', 'csm_allocation_update_state', 'csm_switch_attributes_update', 'csm_soft_failure_recovery', 'csm_diag_run_query', 'csm_allocation_step_begin', 'csm_bb_vg_delete', 'csm_node_attributes_query_history', 'csm_allocation_query_details', 'csm_node_attributes_query_details', 'csm_diag_run_query_details', 'csm_ras_event_create', 'csm_diag_run_begin', 'csm_node_resources_query_all', 'csm_allocation_query', 'csm_ras_event_query_allocation', 'csm_switch_attributes_query', 'csm_node_attributes_query', 'csm_switch_attributes_query_details', 'csm_infrastructure_health_check', 'csm_node_attributes_update', 'csm_ras_msg_type_create', 'csm_ras_msg_type_delete', 'csm_ras_msg_type_query', 'csm_node_query_state_history', 'csm_switch_attributes_query_history', 'csm_allocation_step_query_active_all', 'csm_bb_lv_create', 'csm_node_resources_query', 'csm_allocation_delete', 'csm_ras_event_query', 'csm_allocation_resources_query', 'csm_diag_result_create', 'csm_node_delete', 'csm_ras_msg_type_update', 'csm_bb_vg_query', 'csm_ib_cable_query_history', 'csm_diag_run_end', 'csm_allocation_step_query', 'csm_allocation_step_query_details', 'csm_allocation_update_history', 'csm_allocation_step_end', 'csm_ib_cable_query', 'csm_jsrun_cmd', 'csm_bb_lv_query'] [] ['sview', 'strigger', 'sstat', 'sshare', 'srun', 'sreport', 'squeue', 'sprio', 'smap', 'sinfo', 'sgather', 'sdiag', 'scontrol', 'scancel', 'sbcast', 'sbatch', 'sattach', 'salloc', 'sacctmgr', 'sacct', 'jobsub', 'jobstat', 'ctags', 'diffstat', 'rpmsign', 'swig', 'ccache-swig', 'ocs', 'cscope-indexer', 'cscope', 'doxygen', 'unwrapdiff', 'splitdiff', 'rediff', 'recountdiff', 'lsdiff', 'interdiff', 'grepdiff', 'flipdiff', 'fixcvsdiff', 'filterdiff', 'espdiff', 'editdiff', 'dehtmldiff', 'combinediff', 'yacc', 'byacc', 'indent', 'rlog', 'rcsmerge', 'rcsfreeze', 'rcsdiff', 'rcsclean', 'rcs', 'merge', 'ident', 'co', 'ci', 'svnversion', 'svnsync', 'svnserve', 'svnrdump', 'svnlook', 'svndumpfilter', 'svnadmin', 'svn', 'intltoolize', 'intltool-update', 'intltool-prepare', 'intltool-merge', 'intltool-extract', 'gettextize', 'autopoint', 'stap-report', 'stapsh', 'staprun', 'stap-merge', 'stap-prep', 'stap', 'screen', 'rhn_register', 'whiptail', 'subscription-manager', 'rhsmcertd', 'rhsm-debug', 'rct', 'consolehelper', 'pyinotify', 'easy_install-2.7', 'easy_install', 'snmpwalk', 'snmpvacm', 'snmpusm', 'snmptrap', 'snmptranslate', 'snmptls', 'snmptest', 'snmptable', 'snmpstatus', 'snmpset', 'snmpnetstat', 'snmpinform', 'snmpgetnext', 'snmpget', 'snmpdf', 'snmpdelta', 'snmpbulkwalk', 'snmpbulkget', 'encode_keychange', 'chardetect', 'atopsar', 'atopd', 'atopconvert', 'atop', 'abrt-dump-oops', 'abrt-action-save-kernel-data', 'abrt-action-analyze-oops', 'abrt-action-trim-files', 'abrt-action-perform-ccpp-analysis', 'abrt-action-list-dsos', 'abrt-action-install-debuginfo', 'abrt-action-generate-core-backtrace', 'abrt-action-generate-backtrace', 'abrt-action-analyze-vulnerability', 'abrt-action-analyze-core', 'abrt-action-analyze-ccpp-local', 'abrt-action-analyze-c', 'abrt-action-analyze-backtrace', 'abrt-watch-log', 'abrt-handle-upload', 'abrt-action-save-package-data', 'abrt-action-notify', 'abrt-action-analyze-xorg', 'reporter-ureport', 'reporter-rhtsupport', 'libtar', 'satyr', 'git', 'git-receive-pack', 'git-upload-archive', 'git-upload-pack', 'git-shell', 'lex', 'tset', 'pk12util', 'as', 'lpr.cups', 'speaker-test', 'manpath', 'hwloc-gather-topology', 'hwloc-calc', 'rev', 'snmpconf', 'sctp_darn', 'trust', 'nm', 'fc-pattern', 'ucs2any', 'zforce', 'groups', 'gunzip', 'tracepath', 'rdma_xclient', 'unalias', 'db_upgrade', 'dbus-uuidgen', 'uuidgen', 'uname', 'df', 'fc-match', 'evim', 'schemagen', 'sessreg', 'rdoc', 'gdbus-codegen', 'perl', 'perl5.16.3', 'egrep', 'mlxcables', 'recode-sr-latin', 'pkcheck', 'GET', 'rvim', 'addr2line', 'gsdj500', 'rpmbuild', 'amixer', 'unexpand', 'ypchsh', 'yppasswd', 'ypchfn', 'install', 'cancel.cups', 'msggrep', 'mwm', 'gcc-nm', 'remunge', 'ibgenperm', 'thumbpdf', 'nsenter', 'clean-binary-files', 'httpcfg', 'mlnx_dump_parser', 'ghci', 'autoexpect', 'ntpstat', 'texluac', 'dtestsrq', 'lz4cat', 'pkttyagent', 'python2', 'pkla-admin-identities', 'hpc', 'tail', 'size', 'fc-query', 'mkluatexfontdb', 'dbus-cleanup-sockets', 'nisdomainname', 'ldapurl', 'xsd', 'startx', 'crash', 'mcdiff', 'make', 'gslp', 'mktexfmt', 'pmafm', 'xdg-desktop-icon', 'ldappasswd', 'csh', 'printenv', 'vncconfig', 'wqdump_ext', 'gendiff', 'mst_cable', 'X', 'mstvpd', 'zmore', 'db_hotbackup', 'signver', 'systemctl', 'amsvis', 'tbl', 'xmessage', 'servertool', 'sn', 'embedspu', 'rview', 'nohup', 'grops', 'geoipupdate', 'xfd', 'rm', 'infotocap', 'pwscore', 'eu-objdump', 'mysql', 'mailq.postfix', 'ptx', 'systemd-loginctl', 'mstop', 'rxe_cfg', 'ar', 'ccrewrite', 'diff-jars', 'python', 'pmsocks', 'migspeed', 'xmbind', 'objcopy', 'alias', 'dos2unix', 'ca-legacy', 'tclsh', 'ofed_rpm_info', 'hwloc-assembler-remote', 'vimtutor', 'lprm', 'pygtk-demo', 'jjs', 'prtstat', 'seq', 'col', 'pdcp', 'eu-strip', 'ib_acme', 'resourcedump', 'dirname', 'fc-cache-64', 'lesskey', 'date', 'basename', 'grep', 'geoiplookup6', 'ssh-copy-id', 'xterm', 'svcutil', 'libpng-config', 'dvilualatex', 'db_load', 'systemd-notify', 'dracut', 'texconfig', 'haddock', 'xrandr', 'umount', 'xdg-mime', 'prlimit', 'ucx_info', 'infokey', 'pstree.x11', 'mono-test-install', 'write', 'geqn', 'xdg-screensaver', 'glib-mkenums', 'sudoedit', 'mst', 'ghc-pkg-7.6.3', 'wall', 'dgawk', 'ibv_polldcinfo', 'ppc64le-redhat-linux-gcc', 'gcc', 'xzcat', 'simpdftex', 'cvsbug', 'pdflatex', 'mlxburn', 'ping', 'column', 'fc-cache', 'pinentry-curses', 'pmlogextract', 'scp', 'stdbuf', 'mlxcables_ext', 'renice', 'file', 'raw_ethernet_bw', 'msguniq', 'appletviewer', 'pdf2dsc', 'mlxpci', 'dig', 'gem', 'coredumpctl', 'eu-size', 'conjure', 'mlnx_conf_mgr.sh', 'alsaunmute', 'command', 'cd', 'sha1sum', 'xsltproc', 'hp2ps', 'erb', 'update-desktop-database', 'gtk-update-icon-cache', 'crontab', 'icewm', 'mktexmf', 'whoami', 'ttmkfdir', 'uxterm', 'ucx_perftest', 'ibcongest', 'mlnx_perf', 'funzip', 'ghc', 'pkg-config', 'nvidia-persistenced', 'unzipsfx', 'bootctl', 'fc-conflist', 'pango-querymodules-64', 'splain', 'curl', 'arch', 'xinit', 'pfbtopfa', 'mozroots', 'setsid', 'setterm', 'gr2fonttest', 'wqdump', 'gzexe', 'gtk-launch', 'compare', 'aseqdump', 'cc', 'nvidia-debugdump', 'icesh', 'udevadm', 'lc', 'icehelp', 'gvimdiff', 'taskset', 'xml2-config', 'pkill', 'bzmore', 'mogrify', 'systemd-analyze', 'mkdir', 'lpq.cups', 'libpng15-config', 'mc', 'repstopdf', 'ld', 'ld.bfd', 'systemd-sysv-convert', 'nproc', 'dbpmda', 'cksum', 'psed', 's2p', 'msghack', 'tabs', 'systemd-coredumpctl', 'jmap', 'libtoolize', 'etags.emacs', 'gtester', 'pmie', 'fg', 'ps2pdfwr', 'peekfd', 'ib_atomic_bw', 'preconv', 'dtestx', 'aria_dump_log', 'gpg-error', 'pmtrace', 'allec', 'post-grohtml', 'tree', 'net-snmp-create-v3-user', 'bunzip2', 'zcat', 'xzless', 'lscpu', 'xzmore', 'udaddy', 'alsamixer', 'find2perl', 'dtestcm', 'iconv', 'rpm2cpio', 'desktop-file-edit', 'ps2pdf13', 'ldapexop', 'hwloc-assembler', 'rpmquery', 'ibv_umr', 'chown', 'pdsh', 'gcc-ar', 'pdb2mdb', 'unshare', 'db_replicate', 'nsupdate', 'cpio', 'xmvn-builddep', 'comm', 'dbus-monitor', 'automake-1.13', 'automake', 'eu-stack', 'runghc-7.6.3', 'xgettext', 'chsh', 'eqn', 'gdb', 'lualatex', 'cpupower', 'build-jar-repository', 'gacutil2', 'gawk', 'rftp', 'kpsewhere', 'c99', 'nvidia-smi', 'reset', 'xdg-open', 'zip', 'split', 'mlx_fpga_ext', 'catchsegv', 'ghc-7.6.3', 'keytool', 'aria_chk', 'mlxreg', 'mstregdump', 'alsaucm', 'mlxlink', 'rename', 'chktrust', 'true', 'db_recover', 'mktexlsr', 'xpr', 'skill', 'otflist', 'gfortran', 'gtroff', 'uil', 'jvmjar', 'zgrep', 'elfedit', 'xclipboard', 'passwd', 'prove', 'eu-nm', 'openssl', 'su', 'kibitz', 'kpsestat', 'pgrep', 'printf', 'gtbl', 'ib_read_lat', 'zipdetails', 'gtar', 'jarsigner', 'mysql_find_rows', 'fold', 'gconf-merge-tree', 'munge', 'ln', 'tty', 'uuclient', 'stat', 'chfn', 'find-jar', 'wish', 'pmdiff', 'mkocp', 'lchsh', 'jconsole', 'luit', 'diff', 'rpmdb', 'gcore', 'rsync', 'fc-list', 'dmesg', 'libtool', 'mkfontscale', 'zsoelim', 'mstmcra', 'pod2usage', 'xjc', 'uptime', 'dump2slvl.pl', 'ldapwhoami', 'testrb', 'alsatplg', 'setarch', 'dbus-test-tool', 'msgfmt', 'alsa-delay', 'gview', 'texconfig-dialog', 'ps2pdf14', 'cairo-sphinx', 'sctp_test', 'ps2epsi', 'pmlogconf', 'dwz', 'amidi', 'updmap-sys', 'compile_et', 'man', 'cmp', 'hostnamectl', 'dd', 'tmon', 'vdir', 'pldd', 'sctp_status', 'iceauth', 'getfacl', 'xrdb', 'runhaskell-ghc', 'udpong', 'hwloc-distances', 'sh', 'db_stat', 'ib_write_bw', 'fmt', 'fc-validate', 'mcs', 'ibv_cc_pingpong', 'base64', 'ibv_devinfo', 'ibv_xsrq_pingpong', 'mlxreg_ext', 'sqlite3', 'ps2ps2', 'dapltest', 'tar', 'head', 'ps2pdf', 'ri', 'serialver', 'script', 'pstree', 'msgcomm', 'finger', 'fallocate', 'xzdec', 'whatis', 'gencat', 'perlthanks', 'perlbug', 'xconsole', 'xclock', 'wsdl', 'mlxtrace', 'aclocal', 'aclocal-1.13', 'red', 'readlink', 'unix2mac', 'vim', 'zegrep', 'certutil', 'hwloc-info', 'xinput', 'hwloc-distrib', 'gzip', 'ypcat', 'localedef', 'emacs', 'pmlogsummary', 'mlnx_interface_mgr.sh', 'mysql_config', 'gpgsplit', 'zipinfo', 'unzip', 'updatedb', 'idn', 'systemd-run', 'pwd', 'mailx', 'xzdiff', 'db_dump185', 'wish8.5', 'ibv_devices', 'ls', 'mcedit', 'iptables-xml', 'db_dump', 'unlz4', 'xdg-icon-resource', 'arecord', 'kernel-install', 'otftobdf', 'sqlmetal', 'mysqlslap', 'lp', 'dbus-run-session', 'xcursorgen', 'mremote', 'gsbj', 'ldapadd', 'unpigz', 'pigz', 'ed', 'gss-client', 'ibdiagm.sh', 'm4', 'systemd-path', 'kpsetool', 'cal', 'raw_ethernet_burst_lat', 'mpi-selector', 'lprsetup.sh', 'rvi', 'mono', 'xrefresh', 'zipsplit', 'lp.cups', 'batch', 'mysqladmin', 'ib_write_lat', 'ldapcompare', 'lprm.cups', 'which', 'msginit', 'oldfind', 'toe', 'unlink', 'lz4c', 'ppc64le-redhat-linux-g++', 'c++', 'g++', 'ppc64le-redhat-linux-c++', 'montage', 'ghostscript', 'diff3', 'run-singularity', 'dcgmi', 'ibdiagpath', 'pmfind', 'free', 'ghc-doc-index', 'gpg-zip', 'tcsh', 'mconfig', 'gpgv2', 'jdb', 'pmpython', 'allneeded', 'icewmhint', 'pinky', 'rmid', 'ebrowse', 'lsblk', 'xmlwf', 'memhog', 'ruby', 'eu-findtextrel', 'dislocate', 'vncviewer', 'less', 'ibdev2netdev', 'lsmem', 'systemd-ask-password', 'kpsereadlink', 'lstopo-no-graphics', 'bzcat', 'python2-config', 'cat', 'ngettext', 'gtk-query-immodules-3.0-64', 'apropos', 'dimax_init', 'icewmtray', 'linux64', 'mstcongestion', 'gdb-add-index', 'who', 'dviluatex', 'xwud', 'pstack', 'ldapmodrdn', 'bzgrep', 'ucx_read_profile', 'ionice', 'bison', 'rmic', 'mktexpk', 'ppc32', 'ranlib', 'jhat', 'slabtop', 'x11perf', 'systemd-cgtop', 'wait', 'catman', 'xauth', 'systemd-cat', 'cancel', 'bg', 'env', 'xkill', 'pmlc', 'numactl', 'tnameserv', 'pmdbg', 'at', 'convert', 'Xvnc', 'flint_ext', 'strings', 'soapsuds', 'gstack', 'msgcmp', 'mkofm', 'ssh-keygen', 'sdiff', 'HEAD', 'ib_send_lat', 'mkfontdir', 'pgawk', 'mysqlbinlog', 'lppasswd', 'dbus-daemon', 'emacs-24.3', 'nroff', 'locate', 'setup-nsssysinit.sh', 'igawk', 'mlx_fs_dump', 'gsdj', 'tic', 'lsinitrd', 'weather', 'gcov', 'mono-boehm', 'patch', 'sudo', 'ib_read_bw', 'info', 'dump2psl.pl', 'xsetmode', 'jrunscript', 'kdumpctl', 'lslocks', 'gnroff', 'shuf', 'vmstat', 'latex', 'lslogins', 'lua', 'flex++', 'ssh-keyscan', 'mlxtrace_ext', 'msgattrib', 'signtool', 'rpmverify', 'getent', 'pmieconf', 'ssh-agent', 'xdg-desktop-menu', 'ibdmchk', 'ibnetsplit', 'link', 'gpg-agent', 'pmlogcheck', 'mlxlink_ext', 'dbus-update-activation-environment', 'bc', 'nice', 'raw', 'mlxgearbox', 'pmevent', 'riostream', 'wftopfa', 'aserver', 'mget_temp', 'javadoc', 'unxz', 'ib_send_bw', 'cpp', 'desktop-file-install', 'checksctp', 'ucmatose', 'gpg', 'jsadebugd', 'kpsewhich', 'aria_read_log', 'whereis', 'systemd-tty-ask-password-agent', 'pmerr', 'mysqldump', 'mstfwtrace', 'java', 'dvi2fax', 'ibv_intf', 'tzselect', 'ibv_dctgt', 'fmtutil', 'gsoelim', 'chmem', 'ssh', 'mstmtserver', 'wsdl2', 'pmdate', 'modutil', 'vncserver', 'pmval', 'pmstore', 'systemd-stdio-bridge', 'paste', 'xdg-email', 'POST', 'pod2text', 'gacutil', 'setpriv', 'mandb', 'lsattr', 'tracepath6', 'xwd', 'rdma_server', 'desktop-file-validate', 'mget_temp_ext', 'nvidia-modprobe', 'truncate', 'numfmt', 'mlnx_qos', 'xbiff', 'ppc64', 'lwp-request', 'xgamma', 'rmail', 'mkfifo', 'luac', 'hsc2hs-ghc', 'texconfig-sys', 'systemd-detect-virt', 'secon', 'rebuild-jar-repository', 'sim_client', 'h2ph', 'pminfo', 'f95', 'bashbug-64', 'mktemp', 'gneqn', 'sum', 'unbuffer', 'newgrp', 'mlxfwmanager', 'allcm', 'usleep', 'etags', 'ikdasm', 'mac2unix', 'sha384sum', 'wsimport', 'hwloc-patch', 'ofed_info', 'cvtsudoers', 'krb5-config', 'mstfwreset', 'pdfetex', 'dir', 'sprof', 'run_perftest_multi_devices', 'cp', 'ypwhich', 'xset', 'jstack', 'sxpm', 'pmclient', 'chattr', 'run-parts', 'mstconfig', 'gapplication', 'extcheck', 'mlxvpd', 'ghc-pkg', 'eu-elfcompress', 'fribidi', 'fc', 'x11perfcomp', 'logger', 'watchgnupg', 'dtest', 'xeyes', 'csslint-0.6', 'timeout', 'makedb', 'ibdump', 'chcon', 'aconnect', 'ib_atomic_lat', 'stream', 'icewm-xdg-menu', 'runhaskell', 'msgunfmt', 'lexgrog', 'lsipc', 'expect', 'bashbug', 'xz', 'fmtutil-sys', 'gettext.sh', 'glib-compile-schemas', 'pmstat', 'javah', 'ipcmk', 'pstruct', 'c2ph', 'mtserver', 'luatex', 'cert-sync', 'mlxmdio', 'rdma_xserver', 'pmlogger', 'mountpoint', 'eu-ranlib', 'rmdir', 'hostname', 'pmap', 'ipcalc', 'zipnote', 'lwp-dump', 'pdf2ps', 'gpasswd', 'animate', 'zsh', 'python-config', 'db_deadlock', 'vpi_tcpdump', 'jcmd', 'migratepages', 'resize', 'showrgb', 'captoinfo', 'pax', 'rstream', 'jps', 'ps', 'systemd-cgls', 'db_tuner', 'systemd-inhibit', '[', 'ul', 'snice', 'rpmspec', 'wc', 'pod2html', 'timed-read', 'ibdiagnet', 'lwp-download', 'haddock-ghc-7.6.3', 'cmsutil', 'updmap', 'xvidtune', 'last', 'mlxprivhost', 'top', 'pmdumplog', 'scriptreplay', 'urlgrabber', 'mstprivhost', 'quotasync', 'chgrp', 'touch', 'neqn', 'fc-cat', 'xmag', 'msgen', 'pack200', 'mount', 'md5sum', 'sudoreplay', 'ps2ps', 'gmake', 'autom4te', 'dircolors', 'sha256sum', 'pre-grohtml', 'tsort', 'getconf', 'eu-elflint', 'texlua', 'db_log_verify', 'fc-scan', 'getopt', 'pmie2col', 'vi', 'tload', 'ibv_task_pingpong', 'atrm', 'gettext', 'dc', 'db_archive', 'rdma_client', 'xorg-x11-fonts-update-dirs', 'fonttosfnt', 'etex', 'pf2afm', 'aplaymidi', 'mcookie', 'jar', 'nslookup', 'setxkbmap', 'ipmitool', 'mlxdump', 'hwloc-ls', 'realpath', 'ps2ascii', 'ksh', 'mlxmcg', 'pdftex', 'lpstat', 'read', 'dbus-send', 'perldoc', 'pkcs1-conv', 'jdeps', 'jstatd', 'kpsexpand', 'lwp-mirror', 'mailq', 'gnuplot', 'kpsepath', 'sort', 'grep-changelog', 'fgrep', 'eu-readelf', 'numastat', 'shcomp', 'sync', 'flock', 'timed-run', 'cvt', 'rpm', 'composite', 'autoheader', 'setfacl', 'db_printlog', 'db_verify', 'zcmp', 'expand', 'kpseaccess', 'xmllint', 'csplit', 'bdftopcf', 'ypdomainname', 'soelim', 'podselect', 'kmod', 'mono-heapviz', 'alsaloop', 'pmlogmv', 'cut', 'nvidia-bug-report.sh', 'xzgrep', 'pinentry', 'lpstat.cups', 'eu-ar', 'dvired', 'nettle-lfib-stream', 'jinfo', 'c89', 'mono-service', 'runghc', 'hwloc-bind', 'gtf', 'journalctl', 'dbus-binding-tool', 'check-binary-files', 'hwloc-compress-dir', 'icewm-set-gnomewm', 'perf', 'lpoptions', 'msgconv', 'printafm', 'lpr', 'tput', 'keyctl', 'ex', 'bzless', 'sha512sum', 'withsctp', 'ssh-add', 'mesg', 'findmnt', 'gpgconf', 'host', 'agentxtrap', 'umask', 'raw_ethernet_fs_rate', 'fipshmac', 'gdbus', 'mono-sgen-gdb.py', 'gtester-report', 'ibv_dcini', 'lesspipe.sh', 'mysqlshow', 'piconv', 'xload', 'gtk-query-immodules-2.0-64', 'rmail.postfix', 'dshbak', 'localectl', 'ipcs', 'gex', 'locale', 'db_checkpoint', 'i2c', 'ldd', 'gs', 'arecordmidi', 'msql2mysql', 'autoupdate', 'find', 'chmod', 'amsstat', 'eu-addr2line', 'rpcgen', 'c++filt', 'sndfile-resample', 'hwloc-ps', 'look', 'ibdmtr', 'genpmda', 'curl-config', 'pmprobe', 'rksh', 'pod2man', 'xzcmp', 'mlxfwreset', 'zipgrep', 'utmpdump', 'more', 'gdk-pixbuf-query-loaders-64', 'tc_wrap.py', 'rmiregistry', 'gpg-connect-agent', 'xfontsel', 'gsnd', 'xkbcomp', 'mprof-report', 'mktextfm', 'namei', 'gsettings', 'numademo', 'mpi-selector-menu', 'view', 'icewmbg', 'gcc-ranlib', 'hesinfo', 'cvs', 'pckt_drop', 'gnuplot-wx', 'objdump', 'mckey', 'chrt', 'unix-lpr.sh', 'nail', 'mlnx_qcn', 'sss_ssh_knownhostsproxy', 'ibv_uc_pingpong', 'envsubst', 'ghci-7.6.3', 'mkinitrd', 'autoconf', 'eu-unstrip', 'mysqlcheck', 'ipcrm', 'pango-list', 'lsns', 'loginctl', 'otfdump', 'hwloc-diff', 'mysql_waitpid', 'uniq', 'nvidia-xconfig', 'gvimtutor', 'setup-nsssysinit', 'dvipdf', 'wdctl', 'tee', 'killall', 'cabal', 'mcview', 'ldapsearch', 'sg', 'flex', 'runcon', 'xzegrep', 'gpg2', 'identify', 'tac', 'colcrt', 'pmgenmap', 'font2c', 'nvidia-cuda-mps-server', 'unpack200', 'readelf', 'mlxi2c', 'hexdump', 'ssltap', 'ibtopodiff', 'cxpm', 'msgcat', 'update-mime-database', 'singularity', 'pmloglabel', 'mono-sgen', 'xcutsel', 'irb', 'pmjson', 'login', 'factor', 'linux32', 'machinectl', 'lsb_release', 'vimx', 'gio', 'wget', 'troff', 'busctl', 'lastb', 'pmclient_fg', 'native2ascii', 'mono-service2', 'ibv_srq_pingpong', 'mknod', 'strace', 'sexp-conv', 'time', 'gio-querymodules-64', 'Mail', 'du', 'dconf', 'mlnx_get_vfs.pl', 'domainname', 'alsabat', 'systemd-tmpfiles', 'strace-log-merge', 'ibv_rc_pingpong', 'python2.7', 'sleep', 'cmtime', 'pwdx', 'lpunlock', 'eject', 'mdevices_info', 'ifnames', 'sha224sum', 'koi8rxterm', 'sed', 'getopts', 'xlogo', 'mlxuptime', 'newaliases.postfix', 'aseqnet', 'systemd-firstboot', 'xargs', 'nettle-hash', 'python2.7-config', 'ncursesw5-config', 'pcre-config', 'qperf', 'eu-make-debug-archive', 'newaliases', 'chage', 'build-classpath', 'mysqlaccess', 'bzdiff', 'isosize', 'mstmwrite', 'expr', 'pwmake', 'systemd-escape', 'ncurses5-config', 'xsetroot', 'ibnlparse', 'lstopo', 'lessecho', 'autoreconf', 'gslj', 'orbd', 'clear', 'gctags', 'vncpasswd', 'icewm-session', 'atq', 'mysqlimport', 'rpmkeys', 'xxd', 'xhost', 'ibv_asyncwatch', 'wsgen', 'sotruss', 'mstflint', 'run_perftest_loopback', 'watch', 'net-snmp-config', 'msgfilter', 'systemd-hwdb', 'lastlog', 'slogin', 'gconftool-2', 'ldapdelete', 'test', 'mst_ib_add', 'pkexec', 'zipcloak', 'rsyslog-recover-qi.pl', 'pkaction', 'unix2dos', 'groff', 'shred', 'itrace', 'xmlcatalog', 'texhash', 'systemd-machine-id-setup', 'flint', 'ibdiagnet_csv2xml.py', 'iecset', 'hwloc-annotate', 'eps2eps', 'autoscan', 'grotty', 'colrm', 'bash', 'glib-gettextize', 'yes', 'lz4', 'epstopdf', 'gpgparsemail', 'spax', 'pr', 'kill', 'bzcmp', 'mlxdump_ext', 'ypmatch', 'ibv_ud_pingpong', 'aria_ftdump', 'w', 'logname', 'ksh93', 'od', 'xmodmap', 'gpic', 'pmlogsize', 'p11-kit', 'systemd-nspawn', 'm17n-conv', 'bzip2', 'timedatectl', 'gresource', 'rping', 'infocmp', 'unmunge', 'nl', 'users', 'minit', 'idlj', 'xstdcmap', 'msgmerge', 'a2p', 'csharp', 'mft_uninstall.sh', 'testgdbm', 'gdk-pixbuf-thumbnailer', 'hsc2hs', 'lpq', 'glib-genmarshal', 'tailf', 'quota', 'hca_self_test.ofed', 'id', 'stty', 'update-ca-trust', 'mlxconfig', 'setreg', 'xzfgrep', 'mv', 'fipscheck', 'ftp-rfc', 'disco', 'sqlsharp', 'join', 'xsetpointer', 'ppc', 'rlogin-cwd', 'vimdiff', 'lchfn', 'tr', 'chacl', 'echo', 'netstat', 'texlinks', 'pkla-check-authorization', 'display', 'strip', 'xdg-settings', 'rpdcp', 'mstdump', 'mkpasswd', 'ping6', 'mlxphyburn', 'pydoc', 'ps2pdf12', 'jstat', 'gpgv', 'eu-strings', 'pphs', 'eu-elfcmp', 'jobs', 'zfgrep', 'systemd-delta', 'update-gtk-immodules', 'glib-compile-resources', 'gsettings-data-convert', 'pic', 'mlx_fpga', 'dotlockfile', 'gobject-query', 'redhat_lsb_init', 'Xorg', 'import', 'sftp', 'emacsclient', 'raw_ethernet_lat', 'zless', 'aria_pack', 'msgexec', 'false', 'crlutil', 'nvidia-cuda-mps-control', 'oclock', 'dnsdomainname', 'javac', 'pcp', 'mail', 'fwtrace', 'xdpr', 'awk', 'tclsh8.5', 'gprof', 'xkibitz', 'my_print_defaults', 'rcopy', 'passmass', 'pod2latex', 'freetype-config', 'bzip2recover', 'bdftruncate', 'x0vncserver', 'yum', 'abs2rel', 'geoiplookup', 'pcp2csv', 'build-classpath-directory', 'otfview', 'znew', 'mstmread', 'aplay', 'gvim', 'nvvs', 'ldapmodify', 'nv-hostengine', 'pl2pm', 'javap', 'pango-view', 'ibsim', 'sss_ssh_authorizedkeys', 'hostid', 'create-jar-links', 'mcra', 'zdiff', 'pathchk'] [] ['rhnsd', 'rhn_check', 'spacewalk-channel', 'rhnreg_ks', 'rhn_register', 'rhn-channel', 'rhn-profile-sync', 'subscription-manager', 'userhelper', 'pifconfig', 'pethtool', 'virt-what', 'abrt-install-ccpp-hook', 'abrt-dbus', 'abrt-configuration', 'abrtd', 'abrt-server', 'abrt-auto-reporting', 'vgcfgrestore', 'selabel_digest', 'resize2fs', 'luserdel', 'bootlist', 'fdisk', 'thin_trim', 'e4defrag', 'tracepath', 'pwhistory_helper', 'mkdumprd', 'mke2fs', 'mkfs.ext2', 'mkfs.ext3', 'mkfs.ext4', 'badblocks', 'mii-diag', 'lpc', 'lgroupmod', 'rpc.statd', 'lsdevinfo', 'ibfindnodesusing.pl', 'ifup', 'alsa-info', 'ibdiscover.pl', 'load_policy', 'rtcwake', 'thin_repair', 'usermod', 'xfs_freeze', 'lvs', 'xfs_mdrestore', 'plipconfig', 'groupmod', 'fsck.xfs', 'lsvpd', 'unix_update', 'readprofile', 'vgreduce', 'losetup', 'sshd-keygen', 'update-alternatives', 'rtas_event_decode', 'selabel_lookup_best_match', 'cracklib-check', 'ntptime', 'partx', 'agetty', 'pvdisplay', 'vmcore-dmesg', 'show_irq_affinity_hints.sh', 'mlnx_net_rules', 'kexec', 'cracklib-unpacker', 'lsprop', 'thin_dump', 'alternatives', 'vendor_pre_uninstall.sh', 'yppoll', 'swaplabel', 'lvchange', 'blockdev', 'ibdatacounts', 'dracut', 'useradd', 'zdump', 'alsa-info.sh', 'lparstat', 'ctrlaltdel', 'smpdump', 'ss', 'swapoff', 'swapon', 'zic', 'ipmaddr', 'sys-unconfig', 'sldd.sh', 'iconvconfig.ppc64le', 'iconvconfig', 'tcsd', 'ibhosts', 'dmsetup', 'lid', 'chcpu', 'cache_dump', 'ibchecknode', 'ibroute', 'depmod', 'vgremove', 'pseries_platform', 'nvme', 'getpcaps', 'ppp-watch', 'lscfg', 'cache_repair', 'xfs_logprint', 'postlock', 'serv_config', 'dumpe2fs', 'nvram', 'udevadm', 'parted', 'lsmod', 'tc', 'ntpdate', 'sestatus', 'fsck.minix', 'rpcinfo', 'pmc', 'groupmems', 'srp_daemon.sh', 'iptables-restore', 'pwunconv', 'routel', 'postqueue', 'ls-vdev', 'lpasswd', 'sysctl', 'e2freefrag', 'dmstats', 'capsh', 'sendmail', 'xfs_db', 'pam_timestamp_check', 'chpasswd', 'lvdisplay', 'hwstamp_ctl', 'lnewusers', 'zramctl', 'yptest', 'quotacheck', 'ibdatacounters', 'lvcreate', 'mkdict', 'vgmknodes', 'iptables-save', 'fixfiles', 'set_irq_affinity_cpulist.sh', 'lspci', 'xtables-multi', 'blkdeactivate', 'postlog', 'fsck', 'lsslot', 'xfs_quota', 'rdisc', 'update_flash_nv', 'srp_daemon', 'bridge', 'saquery', 'ibswitches', 'addpart', 'smpquery', 'sss_cache', 'clockdiff', 'ntpdc', 'ypset', 'runlevel', 'sssd', 'build-locale-archive', 'ntpd', 'nfsidmap', 'ipmievd', 'atrun', 'postcat', 'odp_stat.sh', 'lvconvert', 'e2fsck', 'fsck.ext2', 'fsck.ext3', 'fsck.ext4', 'rtstat', 'ibprintrt.pl', 'ifconfig', 'era_dump', 'xfs_growfs', 'sminfo', 'lvmsadc', 'ibclearcounters', 'dmfilemapd', 'restorecon', 'thin_ls', 'ldattach', 'grpconv', 'vendor_post_uninstall.sh', 'ntpq', 'nvsetenv', 'era_check', 'connectx_port_config', 'postconf', 'delpart', 'try-from', 'vpdupdate', 'era_restore', 'avcstat', 'munged', 'snmpd', 'mountstats', 'mklost+found', 'lvmsar', 'ls-veth', 'snmptrapd', 'route', 'ibsrpdm', 'ibstat', 'phc2sys', 'lvresize', 'cracklib-packer', 'new-kernel-pkg', 'fsck.nfs', 'irqbalance', 'logrotate', 'xfs_rtcp', 'rpc.rquotad', 'ibcacheedit', 'genhomedircon', 'genl', 'exportfs', 'xfs_bmap', 'grpck', 'alsactl', 'cache_writeback', 'newusers', 'selabel_partial_match', 'makedumpfile', 'show_gids', 'mlnx_affinity', 'ofed_uninstall.sh', 'vgexport', 'lvmdump', 'nslcd', 'pvresize', 'partprobe', 'set_irq_affinity_bynode.sh', 'show_irq_affinity.sh', 'dump_fts', 'errinjct', 'hardlink', 'matchpathcon', 'fdformat', 'vgextend', 'fsfreeze', 'ofpathname', 'pwck', 'dhclient', 'postdrop', 'sendmail.postfix', 'vgcfgbackup', 'sulogin', 'hack-coff', 'lpc.cups', 'xfs_info', 'ypbind', 'nameif', 'nstat', 'mkfs.cramfs', 'sim_server', 'activate_firmware', 'nfsstat', 'opensm', 'gssproxy', 'ibaddr', 'mkfs.xfs', 'groupadd', 'halt', 'osmtest', 'lvmpolld', 'lsmcode', 'pvs', 'lvremove', 'start-statd', 'debugfs', 'setpci', 'selinuxexeccon', 'ibportstate', 'rtmon', 'ibcheckerrors', 'vgimportclone', 'e2label', 'tune2fs', 'rtas_dump', 'postfix', 'lnstat', 'dump_mfts.sh', 'thin_restore', 'check_lft_balance.pl', 'ibidsverify.pl', 'cma_roce_tos', 'selabel_lookup', 'ip6tables-save', 'rmmod', 'cache_metadata_size', 'nsm', 'run_srp_daemon', 'runuser', 'xfs_metadump', 'getcap', 'sefcontext_compile', 'ip', 'iptables', 'glibc_post_upgrade.ppc64le', 'fsadm', 'iblinkinfo.pl', 'ibqueryerrors.pl', 'setfiles', 'sys_ident', 'dhclient-script', 'tracepath6', 'findfs', 'getsebool', 'cbq', 'e2image', 'blkdiscard', 'uuserver', 'ifcfg', 'shutdown', 'smtp-source', 'install-info', 'set_nodedesc.sh', 'xfs_repair', 'rsyslogd', 'rpcdebug', 'lvm', 'mkhomedir_helper', 'pvscan', 'logsave', 'pwconv', 'unsquashfs', 'ntp-keygen', 'e2undo', 'blkmapd', 'vgscan', 'osd_login', 'umount.nfs', 'ibcheckerrs', 'rpc.nfsd', 'iblinkinfo', 'ibtracert', 'cfdisk', 'common_irq_affinity.sh', 'modinfo', 'sasldblistusers2', 'rtpr', 'selinuxconlist', 'wrapper', 'blkid', 'ibclearerrors', 'lvmconf', 'xqmstats', 'vgsplit', 'postsuper', 'thin_check', 'filefrag', 'adduser', 'redhat_lsb_trigger.ppc64le', 'dump_lfts.sh', 'drmgr', 'cache_check', 'crond', 'pvchange', 'vendstat', 'setenforce', 'addgnupghome', 'tcpdmatch', 'reboot', 'vipw', 'rpc.gssd', 'cracklib-format', 'perfquery', 'sln', 'pivot_root', 'create-cracklib-dict', 'quotaon', 'groupdel', 'ptp4l', 'mkfs', 'xfs_estimate', 'dmeventd', 'gss-server', 'usernetctl', 'show_counters', 'xfs_ncheck', 'vgchange', 'grpunconv', 'quotastats', 'iptunnel', 'dkms', 'resizepart', 'sysctl_perf_tuning', 'xfs_mkfile', 'repquota', 'ip6tables-restore', 'lusermod', 'wipefs', 'sshd', 'ifdown', 'cache_restore', 'arp', 'pvremove', 'clock', 'tickadj', 'ldconfig', 'selinuxdefcon', 'lvreduce', 'vigr', 'quot', 'vgdisplay', 'lchage', 'arping', 'ibacm', 'ibcheckportstate', 'smparquery', 'insmod', 'addnote', 'lvmetad', 'ibprintca.pl', 'switch_root', 'hwclock', 'kpartx', 'ifstat', 'sysinfo-snapshot.py', 'setsebool', 'edquota', 'killall5', 'pidof', 'anacron', 'service', 'sfdisk', 'vgimport', 'vgrename', 'sm-notify', 'lvmdiskscan', 'lvscan', 'selinuxenabled', 'nologin', 'atd', 'accessdb', 'ibcheckstate', 'userdel', 'lsvio', 'ibnodes', 'weak-modules', 'quotaoff', 'setquota', 'era_invalidate', 'automount', 'xfs_copy', 'sosreport', 'consoletype', 'phc_ctl', 'safe_finger', 'ppc64_cpu', 'mlnx_eswitch_set', 'uesensor', 'rpc.mountd', 'ls-vscsi', 'ibsysstat', 'modprobe', 'ibstatus', 'lgroupadd', 'vgs', 'rtacct', 'pdata_tools', 'telinit', 'setup_mr_cache.sh', 'poweroff', 'lsof', 'slattach', 'visudo', 'ibcheckportwidth', 'update-pciids', 'nscd', 'update_flash', 'smtp-sink', 'mkswap', 'sushell', 'lvmconfig', 'mktree', 'xfs_admin', 'ctstat', 'lvrename', 'ibmirror', 'pam_tally2', 'chkconfig', 'pam_console_apply', 'xfs_io', 'ib2ib_setup', 'nfsdcltrack', 'mksquashfs', 'umount.nfs4', 'arpd', 'rtas_ibm_get_vpd', 'setcap', 'rtas_dbg', 'chroot', 'ibqueryerrors', 'grubby', 'timemaster', 'ibchecknet', 'installkernel', 'vgmerge', 'rpc.idmapd', 'create-munge-key', 'routef', 'mount.nfs', 'pvmove', 'ip6tables', 'postmulti', 'ibnetdiscover', 'key.dns_resolver', 'request-key', 'alsabat-test.sh', 'genhostid', 'ibswportwatch.pl', 'postmap', 'init', 'ibprintswitch.pl', 'ether-wake', 'ifenslave', 'selinux_restorecon', 'fstrim', 'xfs_fsr', 'packer', 'lgroupdel', 'vgcreate', 'mount.nfs4', 'ethtool', 'fsck.cramfs', 'postalias', 'lvextend', 'vgconvert', 'saslpasswd2', 'netreport', 'mkfs.minix', 'cma_roce_mode', 'ibcheckwidth', 'thin_metadata_size', 'faillock', 'thin_rmap', 'ibcheckport', 'pvck', 'postkick', 'ibrouters', 'pvcreate', 'tcpd', 'vgck', 'rpcbind', 'ping6', 'opal-prd', 'thin_delta', 'mii-tool', 'showmount', 'ibccquery', 'devlink', 'set_irq_affinity.sh', 'ibping', 'nfsiostat', 'mlnx_tune', 'hvcsadmin', 'unix_chkpwd', 'getenforce', 'luseradd', 'set_poweron_time', 'semodule', 'convertquota', 'applygnupgdefaults', 'fuser', 'ibccconfig', 'compat_gid_gen'] ['decoder'] ['ibmsquit', 'ibis', 'dump2slvl.pl', 'ibdiagpath', 'IBMgtSim', 'dump2psl.pl', 'ibdmchk', 'mkSimNodeDir', 'ibdiagui', 'ibdiagnet', 'RunSimTest', 'ibdmtr', 'ibtopodiff', 'ibdmsh', 'ibnlparse', 'ibmssh'] ['jsrun', 'jswait', 'jskill', 'query_env', 'export_slurm_env', 'jsm_simulator', 'js_task_info', 'admin', 'jsproxy', 'jslist', 'export_smpi_env', 'jsm', 'stock'] ['hiera', 'facter', 'puppet', 'facter-ng.bat'] ['mmtrace', 'mmsysmon.py', 'mmnfsfuncs', 'mmcesnfsmonitor', 'mmjob', 'mmdelcallback', 'tsdf', 'tschfileset', 'tslsdisk', 'tslspolicy', 'tslsfs', 'tsdelsnapshot', 'tslsfileset', 'tsnsdaccess', 'tscrsnapshot', 'tslspool', 'tssnapdir', 'tsedquota', 'tsusercmd', 'tslssnapshot', 'tsstatus', 'mmcrnsd', 'tsgetscsiinfo', 'mmqosnice', 'mmsetquota', 'mmdelfileset', 'tsprpreemptabort', 'cleanupkeystonedb', 'mmsdrfsdef.Linux', 'mmcesuserauthcrservice', 'mmdumpfilocks', 'tschdisk', 'tsaddpdisk', 'tsctl', 'tskafkaauth', 'tsdbfs', 'tscheckquota', 'tsfsctl', 'tsrpldisk', 'tschpdisk', 'tsrecgroupserver', 'tscmd', 'tsreclaimspace', 'tscrrecgroup', 'tschstoragepool', 'tsrestripefs', 'tsdefragfs', 'tsfileid', 'tsdsh', 'tsdeldisk', 'tsquotaon', 'tschfs', 'tsdefedquota', 'tsunmount', 'tsdelpdisk', 'tsressnapshot', 'tscrvdisk', 'tsquotaoff', 'tsexpelnode', 'tslsvdisk', 'tscrfs', 'tschmgr', 'tslsrecgroup', 'tslsrecoverygroupevents', 'tsdelvdisk', 'tsnsddiscover', 'tsdefquotaoff', 'tscrfileset', 'tsdelfs', 'tsdbvdisk', 'tsdelfileset', 'tsadddisk', 'tscachectl', 'tsdefquotaon', 'tschcarrier', 'tsauth', 'tslsqos', 'tslspdisk', 'tsnsdrediscover', 'tsremount', 'tsdelrecgroup', 'tschpool', 'tsrepquota', 'tschqos', 'tschrecgroup', 'tsfsck', 'tsdiag', 'tssbrff', 'mmlsfileset', 'mmexectsmcmd', 'mmgetkafkaspecinfo', 'mmfs', 'mmchconfig', 'ces.snap.py', 'mmperfmon', 'tsgetacl', 'clstrwatchcallbacks', 'mmcessmblsconfig', 'tslsattr', 'mmcesmonitord', '.links', 'mmnfsgrace', 'mmhelp-apolicy', 'mmpmon', 'mmcesnfsdelexport', 'mmchpolicy', 'gui.snap.py', 'tspcache', 'perfmon.snap.py', 'mmsdrquerydef', 'mmlsqos', 'mmxargs', 'tschattr', 'mmclidecode', 'clstrwatchconsumermanager', 'mmfsctl', 'mmpsnap', 'mmccrnv', 'perf.snap.py', 'mmcespnfsip', 'mmnfsnodeback', 'tsimgrestore', 'mmcesuserauthckservice', 'mmchnodeclass', 'pymmcesnfslsexport.py', 'mmdelacl', 'mmumount', 'mmcrnodeclass', 'mmsysmonc', 'tspcacheevict', 'mmexecvfile', 'sshwrap', 'mmgetifconf', 'mmfs-ppc64-rh4', 'sysmon.snap.py', 'mmimgrestore', 'mmcesobjaccesslinkfset', 'mmchecksubsys', 'mmcesop', 'tspmon', 'mmdefedquota', 'mmdelsnapshot', 'mmreclaimspace', 'mmsysmoncontrol', 'tsspectrumdiscover', 'mmyfields', 'mmchnode', 'mmrestorefs', 'mmcallhome', 'mmexportfs', 'mmcesnfsloadexport', 'tslspool34', 'mmnfsmonitor', 'mmsnmpagentd30', 'tsfindinode', 'mmfsfuncs.Linux', 'mmdumpperfdata', 'mmcesobjcrbase', 'mmdsh', 'objmetric_count.py', 'mmauditmount', 'mmcessmblsexport', 'mmdevdiscover', 'mmlsnode', 'mmautoload', 'mmcesnfscrexport', 'mmchnsd', 'mmfileid', 'mmcesnfsfuncs', 'mmcesrecovernode', 'mmlsfs', 'mmcollectdebugdata', 'tseditacl', 'tsbuhelper', 'tslinkfileset', 'tspreparedisk', 'mmrpldisk', 'mmdelnode', 'mmceslog', 'mmcrfsc', 'mmcesblockfuncs', 'mmgensymtable', 'mmfsd', 'mmnfsinstall', 'mmdspmsg', 'mmclone', 'mmchfs', 'mmlsdisk', 'mmnfstakeover', 'tsyselect', 'mmnfsup', 'mmcessmbcrexport', 'tsaddrmap', 'mmnetverify', 'mmchpool', 'msgqueue.snap.py', 'mmcesobjlscfg', 'tsrestorefileset', 'mmbuildgpl', 'mmsmbman', 'tsfindname', 'mmcesloadmonitor', 'mmcesobjaccess', 'mmaddcallback', 'mmcesobjpolicyfuncs', 'mmcessmbdelexport', 'msgqueueDaemonManager', 'core.snap.py', 'tsgskkm', 'mmauth', 'mmedquota', 'mmshutdown', 'tsdbmemleakparse', 'mmadquery', 'mmsdrcli', 'mmccr', 'mmcesobjchstoragepolicy', 'mmcesnfschcfg', 'tswatchmonitor', 'mmmigratefs', 'mmputacl', 'mmlscluster', 'commonsnap.py', 'mmcesservice', 'mmadddisk', 'tslsmgr', 'tssbrindex', 'mmafmlocal', 'mmlsperfdata', 'mmnfsuninstall', 'mmcmi', 'mmcesobjs3', 'tspcachescan', 'mmlsnsd', 'mmchcluster', 'mmunmount', 'mmnfsquorumloss', 'mmcesnetdeladdress', 'mmlsquota', 'mmces', 'pymmcesnfsfuncs.py', 'tsputacl', 'mmchqos', 'tsprshowfence', 'gpfsrunlevel', 'mmimgbackup', 'mmsdrrestore', 'tsqosnice', 'mmsdrserv', 'mmmsgqueue', 'mmcesmmcdelexport', 'mmlinkfileset', 'mmrestoreconfig', 'mmdelnodeclass', 'mmsmbfuncs', 'lxtrace-4.14.0-115.21.2.el7a.ppc64le', 'mmcesobjcfgman', 'mmfixcfg', 'mmcesnfslsexport', 'tsdbmemleak', 'mmaudit', 'mmcesnfslscfg', 'mmsmbsupportedoptions', 'mmafmconfig', 'mmlscallback', 'mmlsmgr', 'tsbackup', 'mmcesminfuncs', 'mmfsmount', 'mmcesmmcchexport', 'tsrestripefile', 'kdump', 'mmimportfs', 'mmcesobjcrring', 'mmnfs', 'mmcommon', 'mmcesnetmvaddress', 'mmsnmpagentd', 'mmcesobjfuncs', 'gui.callhome.py', 'tsbackup33', 'lxtrace', 'mmsdrfsdef', 'mmsmb', 'mmobj', 'tsprclear', 'mmceshdfsfuncs', 'mmcesnetworkmonitor', 'tspcacheutil', 'mmqos', 'mmlspolicy', 'mmrestripefs', 'mmcessmbfuncs', 'mmaddnode', 'mmblock', 'mmcrfs', 'mmmount', 'tsprreadres', 'mmnsddiscover', 'mmprotocoltrace', 'mmglobfuncs', 'tsprreadkeys', 'mmnfsdown', 'gpfs.snap', 'object.snap.py', 'mmcesnetaddaddress', 'mmcesobjchcfg', 'mmrsh', 'mmcesobjmr', 'mmeditacl', 'auditConsumerManager', 'mmlsconfig', 'mmsync', 'mmgetacl', 'mmcesuserauthrmservice', 'mmhealth', 'tsdelacl', 'mmremote', 'mmpercentencode', 'mmcloudfuncs', 'daemonize', 'mmcesnfschexport', 'tsclone', 'callhome.snap.py', 'clstrwatchreplaymanager', 'tsnetverify', 'mmstartup', 'mmcachectl', 'mmgskkm', 'mmdefragfs', 'mmsnapdir', 'tsapolicy', 'mmrcmd', 'mmexpelnode', 'mmsdrquery', 'ece.callhome.py', 'mmchdisk', 'mmcesnetdown', 'mmlslicense', 'mmrestripefile', 'mmcrfileset', 'mmnfscleanup', 'kdump-4.14.0-115.21.2.el7a.ppc64le', 'mmlogmsg', 'mmcessmbexportacl', 'mmchlicense', 'mmsetrcmd', 'tsclwatchrules', 'mmdynamicmap', 'tssetquota', 'tsprreserve', 'wftopics', 'mmvaryonvg', 'mmsnmpagentd10', 'mmbackupconfig', 'mmdefquotaon', 'mmlsattr', 'mmcesfuncs', 'mmfsadm', 'mmcesmmccrexport', 'runmmfs', 'mmafmcmd', 'ccrrestore', 'mmunlinkfileset', 'basicsnap.py', 'mmafmhomeconfig', 'auth.snap.py', 'fab3.snap.py', 'mmuserauth', 'object.callhome.py', 'mmlogsort', 'mmdf', 'mmcesobjcrstoragepolicy', 'mmdefquotaoff', 'mmtracectl', 'mmdump', 'tsprquery', 'mmfsenv', 'mmfsfuncs', 'mmrepquota', 'mmcesdr', 'mmcesnode', 'tslsquota', 'mmdsm', 'mmdelnsd', 'mmnfsinit', 'mmcrsnapshot', 'mmlockf', 'mmcesauthfuncs', 'network.callhome.py', 'mmglobfuncs.Linux', 'tsprinquiry', 'nfs.snap.py', 'mmcesnetlsaddress', 'mmapplypolicy', 'mmdumpkthreads', 'tswatchgpfsconduit', 'mmcessmbchconfig', 'perfmon.callhome.py', 'mmauditpreunmount', 'mmrcp', 'scpwrap', 'mmremotefs', 'tsunlinkfileset', 'mmcrcluster', 'mmnfspreunmount', 'mmcessmbchexport', 'tsauditconsumer', 'mmchattr', 'mmdeldisk', 'mmfsck', 'smb.snap.py', 'mmcesobjdepstoragepolicy', 'mmcheckquota', 'mmprodname', 'mmdelfs', 'mmcallhremote', 'mmgetstate', 'mmcesuserauthlsservice', 'mmcesnetup', 'mmremotecluster', 'tsstarthelper', 'mmcloudgateway', 'mmgetconfdata', 'tschpolicy', 'mmchmgr', 'mmcesnetchaddress', 'mmsmbvalidoptions', 'mmchfileset', 'mmwatch', 'tsprregister', 'mmstartpolicy', 'hadoop.snap.py', 'mmquotaoff', 'mmcesmonitor', 'mmquotaon', 'msgqueueservicesmonitormanager', 'mmlspool', 'mmlsmount', 'mmccrmonitor', 'mmbackup', 'mmlsnodeclass', 'mmrefresh', 'mmnfsrecovernode', 'mmpercentdecode', 'wftopichk', 'tspcachesnapdiff', 'mmdiag', 'mmlssnapshot', 'mmcesobjlsstoragepolicy', 'mmafmctl', 'mmstatdcallout', 'mmksh', 'sshscpwrap'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkHIPPreprocessor from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:845) TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:845) Placeholder for now ================================================================================ TEST checkSYCLCompiler from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:866) TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:866) Locate a functional SYCL compiler ================================================================================ TEST checkSYCLPreprocessor from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:892) TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:892) Placeholder for now ================================================================================ TEST checkCxxCompiler from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:981) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:981) Locate a functional Cxx compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicxx...not found Checking for program /sw/summit/xalt/1.2.0/bin/mpicxx...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicxx...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Testing executable /tmp/petsc-hp5ZuT/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-hp5ZuT/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-hp5ZuT/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpicxx --version stdout: g++ (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1022) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1022) Locate a functional Cxx preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicxx...not found Checking for program /sw/summit/xalt/1.2.0/bin/mpicxx...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicxx...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicxx...found Defined make macro "CXXPP" to "mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicxx -E -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkFortranCompiler from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1123) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1123) Locate a functional Fortran compiler ================================================================================ TEST checkLargeFileIO from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1317) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1317) ================================================================================ TEST checkArchiver from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1416) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.2.0/bin/ar...not found Checking for program /sw/summit/forge/20.0.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ar...not found Checking for program /sw/summit/gcc/6.4.0/bin/ar...not found Checking for program /sw/summit/cuda/10.1.243/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ar...not found Checking for program /sw/sources/hpss/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /opt/ibm/csm/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.2.0/bin/ranlib...not found Checking for program /sw/summit/forge/20.0.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ranlib...not found Checking for program /sw/summit/gcc/6.4.0/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.243/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ranlib...not found Checking for program /sw/sources/hpss/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /opt/ibm/csm/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-hp5ZuT/config.setCompilers/libconf1.a /tmp/petsc-hp5ZuT/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /tmp/petsc-hp5ZuT/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.2.0/bin/ar...not found Checking for program /sw/summit/forge/20.0.1/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ar...not found Checking for program /sw/summit/gcc/6.4.0/bin/ar...not found Checking for program /sw/summit/cuda/10.1.243/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ar...not found Checking for program /sw/sources/hpss/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /opt/ibm/csm/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.2.0/bin/ranlib...not found Checking for program /sw/summit/forge/20.0.1/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ranlib...not found Checking for program /sw/summit/gcc/6.4.0/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.243/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ranlib...not found Checking for program /sw/sources/hpss/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /opt/ibm/csm/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-hp5ZuT/config.setCompilers/libconf1.a /tmp/petsc-hp5ZuT/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib /tmp/petsc-hp5ZuT/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -L/tmp/petsc-hp5ZuT/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1531) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1531) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking shared linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.0/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest -shared /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/libconftest.so -shared /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -L/tmp/petsc-hp5ZuT/config.setCompilers -lconftest Using shared linker mpicc with flags ['-shared'] and library extension so Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1260) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1260) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/libconftest.so -shared /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying CUDA for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/libconftest.so -shared /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Accepted CUDA PIC code without compiler flag ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1643) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1643) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest -Wl,-rpath,/autofs/nccs-svm1_home1/adams/petsc /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/autofs/nccs-svm1_home1/adams/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest -Wl,-rpath,/autofs/nccs-svm1_home1/adams/petsc /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/autofs/nccs-svm1_home1/adams/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicc -V Trying CUDA linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: nvcc -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Valid CUDA linker flag -Wl,-rpath,/autofs/nccs-svm1_home1/adams/petsc ================================================================================ TEST checkLibC from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1682) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1682) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/libconftest.so -shared /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1728) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1728) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.libraries Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest /tmp/petsc-hp5ZuT/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking dynamic linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.2.0/bin/mpicc...not found Checking for program /sw/summit/forge/20.0.1/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest -shared /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/libconftest.so -shared /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-hp5ZuT/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1777) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1777) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CUDAC" with "nvcc" Substituting "CUDAFLAGS" with "" Substituting "CUDAPP" with "nvcc -E" Substituting "CUDAPPFLAGS" with "-Wno-deprecated-gpu-targets" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 10.776234 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/sharedLibraries.py:31) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:31) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/sharedLibraries.py:47) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:47) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Running Executable WITHOUT threads to time it out Executing: mpicc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/sharedLibraries.py:92) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/sharedLibraries.py:98) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.038806 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.003432 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilerFlags.py:81) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:81) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (GCC) 6.4.0" Defined make macro "MPICC_SHOW" to "gcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm" Trying C compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to gcc: error: unrecognized command line option '-mfp16-format=ieee' PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Trying C compiler flag -g -O -fPIC -DFP_DIM=2 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g -O -fPIC -DFP_DIM=2 Defined make macro "Cxx_VERSION" to "g++ (GCC) 6.4.0" Defined make macro "MPICXX_SHOW" to "g++ -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/lib -lmpiprofilesupport -lmpi_ibm" Trying Cxx compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g -O -fPIC Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g -O -fPIC Defined make macro "CUDA_VERSION" to "nvcc: NVIDIA (R) Cuda compiler driver" Trying CUDA compiler flag -g -O -Xcompiler -rdynamic -lineinfo--with-ctable=0 Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -g -O -Xcompiler -rdynamic -lineinfo--with-ctable=0 -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : '-Xcompiler': expected a number Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -g -O -Xcompiler -rdynamic -lineinfo--with-ctable=0 due to nonzero status from link Rejecting compiler flag -g -O -Xcompiler -rdynamic -lineinfo--with-ctable=0 due to nvcc fatal : '-Xcompiler': expected a number PETSc Error: No output file produced Rejected CUDA compiler flag -g -O -Xcompiler -rdynamic -lineinfo--with-ctable=0 child config.compilerFlags 0.934415 Running Executable WITHOUT threads to time it out Executing: mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkC99Flag from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:1418) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1418) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c:7:11: warning: variable 'x' set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: ================================================================================ TEST checkRestrict from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:156) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: mpicc -V All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.compilers Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.compilers/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:411) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:411) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:126) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:126) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:422) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:422) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:220) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:220) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-hp5ZuT/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.compilers/conftest.o /tmp/petsc-hp5ZuT/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:1369) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1369) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 -MMD -MP /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -MMD -MP /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying CUDA compiler flag -MMD -MP Rejected CUDA compiler flag -MMD -MP Trying CUDA compiler flag -MMD Rejected CUDA compiler flag -MMD Trying CUDA compiler flag -xMMD Rejected CUDA compiler flag -xMMD Trying CUDA compiler flag -qmakedep=gcc Rejected CUDA compiler flag -qmakedep=gcc Trying CUDA compiler flag -MD Rejected CUDA compiler flag -MD Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -MMD -MP -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -MMD -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to nonzero status from link Rejecting compiler flag -MMD due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -xMMD -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'xMMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to nvcc fatal : Unknown option 'xMMD' PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -qmakedep=gcc -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'qmakedep' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to nvcc fatal : Unknown option 'qmakedep' PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -MD -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MD due to nonzero status from link Rejecting compiler flag -MD due to nvcc fatal : Unknown option 'MD' PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkRestrict from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:156) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: mpicc -V Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.compilers/conftest.cc: In function 'int main()': /tmp/petsc-hp5ZuT/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxDialect from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:469) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:469) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:441) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:441) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.setCompilers/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:141) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:141) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:553) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:553) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.compilers/conftest.o /tmp/petsc-hp5ZuT/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.compilers/confc.o: In function `asub()': /tmp/petsc-hp5ZuT/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-hp5ZuT/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-hp5ZuT/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-hp5ZuT/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-hp5ZuT/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-hp5ZuT/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-hp5ZuT/config.compilers/confc.o: In function `__static_initialization_and_destruction_0': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/iostream:74: undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-hp5ZuT/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /tmp/petsc-hp5ZuT/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /tmp/petsc-hp5ZuT/config.compilers/confc.o:(.toc+0x10): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-hp5ZuT/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-hp5ZuT/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.compilers/conftest' collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.compilers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.compilers/conftest.o /tmp/petsc-hp5ZuT/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler Running Executable WITHOUT threads to time it out Executing: mpicxx -V ================================================================================ TEST setupFrameworkCompilers from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:1489) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1489) child config.compilers 3.367836 ================================================================================ TEST configureClosure from config.utilities.closure(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.utilities.closure Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.closure/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.utilities.closure/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.utilities.closure/conftest.c:6:6: error: expected identifier or '(' before '^' token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.046291 child config.compilersFortran 0.000036 ================================================================================ TEST checkStdC from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.headers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.headers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.headers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-hp5ZuT/config.headers/conftest to see if it can be run Executing: /tmp/petsc-hp5ZuT/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-hp5ZuT/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.headers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.headers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST checkRecursiveMacros from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.headers/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 3.449367 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.utilities.cacheDetails Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.utilities.cacheDetails/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-hp5ZuT/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-hp5ZuT/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-hp5ZuT/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.443791 ================================================================================ TEST check_struct_sigaction from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:42) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.types Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.types/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:48) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.types/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.types/conftest.c:11:1: error: unknown type name '__int64' __int64 a;; ^~~~~~~ /tmp/petsc-hp5ZuT/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:54) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.types/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:64) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.types/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.types/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:59) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.types/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:70) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.types/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:74) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:81) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.types/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.types/conftest.c:6:17: warning: variable 'x' set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.types/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.types/conftest.c:6:17: warning: variable 'x' set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:92) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-hp5ZuT/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkConst from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:103) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.types/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.types/conftest.c:25:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (x[0]); ^~ /tmp/petsc-hp5ZuT/config.types/conftest.c:26:5: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' { /* SCO 3.2v4 cc rejects this. */ ^ /tmp/petsc-hp5ZuT/config.types/conftest.c:30:9: warning: 't' is used uninitialized in this function [-Wuninitialized] *t++ = 0; ~^~ /tmp/petsc-hp5ZuT/config.types/conftest.c:46:25: warning: 'b' is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ~~~~~^~~ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkVisibility from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:193) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ================================================================================ TEST checkMaxPathLen from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:215) TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.types /tmp/petsc-hp5ZuT/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 2.184183 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.000999 ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ================================================================================ TEST checkMath from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-hp5ZuT/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status Checking for functions [sin floor log10 pow] in library ['m'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" CheckMath: using math library ['libm.a'] ================================================================================ TEST checkMathErf from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.libraries/conftest.c: In function '_check_erf': /tmp/petsc-hp5ZuT/config.libraries/conftest.c:5:74: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.libraries/conftest.c: In function '_check_tgamma': /tmp/petsc-hp5ZuT/config.libraries/conftest.c:5:83: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathLgamma from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:301) TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" lgamma() found Defined "HAVE_LGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:314) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:322) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.libraries/conftest.c: In function '_check_log2': /tmp/petsc-hp5ZuT/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:331) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:347) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 4.794603 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-hp5ZuT/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.libraries/conftest' collect2: error: ld returned 1 exit status Checking for functions [ADIOI_BGL_Open] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-hp5ZuT/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.libraries/conftest' collect2: error: ld returned 1 exit status *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.767997 child config.atomics 0.000007 ================================================================================ TEST checkSysinfo from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.functions Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^~~~~ /tmp/petsc-hp5ZuT/config.functions/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:13:30: warning: implicit declaration of function 'sysinfo' [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:8:1: warning: 'Argp' is used uninitialized in this function [-Wuninitialized] vprintf( "%d", Argp ); ^~~~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:8:1: warning: 'Argp' is used uninitialized in this function [-Wuninitialized] vfprintf(stdout, "%d", Argp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:8:1: warning: 'Argp' is used uninitialized in this function [-Wuninitialized] vsnprintf(str,5, "%d", Argp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /tmp/petsc-hp5ZuT/config.functions/conftest.c:6:5: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^~~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen fpresetsticky drand48 socket popen getrusage _mkdir time fpsetsticky stricmp] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.c:16:6: warning: conflicting types for built-in function 'snprintf' char snprintf(); ^~~~~~~~ /tmp/petsc-hp5ZuT/config.functions/conftest.c:19:6: warning: conflicting types for built-in function 'bzero' char bzero(); ^~~~~ /tmp/petsc-hp5ZuT/config.functions/conftest.c:35:6: warning: conflicting types for built-in function 'fork' char fork(); ^~~~ /tmp/petsc-hp5ZuT/config.functions/conftest.c:44:6: warning: conflicting types for built-in function 'strcasecmp' char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char fpresetsticky(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char fpsetsticky(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-hp5ZuT/config.functions/conftest.c:77: undefined reference to `_access' /tmp/petsc-hp5ZuT/config.functions/conftest.c:107: undefined reference to `_getcwd' /tmp/petsc-hp5ZuT/config.functions/conftest.c:113: undefined reference to `_pipe' /tmp/petsc-hp5ZuT/config.functions/conftest.c:131: undefined reference to `_lseek' /tmp/petsc-hp5ZuT/config.functions/conftest.c:143: undefined reference to `_sleep' /tmp/petsc-hp5ZuT/config.functions/conftest.c:185: undefined reference to `_snprintf' /tmp/petsc-hp5ZuT/config.functions/conftest.c:209: undefined reference to `sbreak' /tmp/petsc-hp5ZuT/config.functions/conftest.c:239: undefined reference to `_set_output_format' /tmp/petsc-hp5ZuT/config.functions/conftest.c:245: undefined reference to `PXFGETARG' /tmp/petsc-hp5ZuT/config.functions/conftest.c:263: undefined reference to `fpresetsticky' /tmp/petsc-hp5ZuT/config.functions/conftest.c:293: undefined reference to `_mkdir' /tmp/petsc-hp5ZuT/config.functions/conftest.c:305: undefined reference to `fpsetsticky' /tmp/petsc-hp5ZuT/config.functions/conftest.c:311: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock dlerror] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.c:17:6: warning: conflicting types for built-in function 'bzero' char bzero(); ^~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_DLERROR" to "1" Checking for functions [fork getpagesize memalign gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'fork' char fork(); ^~~~ /tmp/petsc-hp5ZuT/config.functions/conftest.c:18:6: warning: conflicting types for built-in function 'strcasecmp' char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char memalign(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `_access' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [snprintf] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'snprintf' char snprintf(); ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `_getcwd' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [_pipe] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `_pipe' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [getwd] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `_lseek' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [sleep] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `_sleep' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [lseek] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `_snprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [sbreak] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `sbreak' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [getcwd] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `_set_output_format' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [fpresetsticky] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `fpresetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [_mkdir] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `_mkdir' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [fpsetsticky] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `fpsetsticky' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status Checking for functions [stricmp] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.functions/conftest.o: In function `main': /tmp/petsc-hp5ZuT/config.functions/conftest.c:24: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-hp5ZuT/config.functions/conftest' collect2: error: ld returned 1 exit status ================================================================================ TEST checkMmap from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.functions/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 11.519760 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.000990 child config.utilities.fortranCommandLine 0.000007 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.utilities.featureTestMacros Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.205155 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.utilities.missing Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -lstdc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /tmp/petsc-hp5ZuT/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-hp5ZuT/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 2.171131 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^compilation terminated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^compilation terminated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" # 1 "/tmp/petsc-hp5ZuT/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 # 1 "/tmp/petsc-hp5ZuT/config.headers/conffix.h" 1 # 3 "/tmp/petsc-hp5ZuT/config.headers/conftest.c" 2 stderr: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering: /tmp/petsc-hp5ZuT/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^compilation terminated.: child config.utilities.FPTrap 0.110818 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real All intermediate test results are stored in /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.libraries/conftest.c:4:22: fatal error: quadmath.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 1.154522 ================================================================================ TEST configureMkdir from config.programs(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mkdir...not found Checking for program /sw/summit/xalt/1.2.0/bin/mkdir...not found Checking for program /sw/summit/forge/20.0.1/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mkdir...not found Checking for program /sw/summit/gcc/6.4.0/bin/mkdir...not found Checking for program /sw/summit/cuda/10.1.243/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/mkdir...not found Checking for program /sw/sources/hpss/bin/mkdir...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mkdir...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mkdir...not found Checking for program /opt/ibm/csm/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Running Executable WITHOUT threads to time it out Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /sw/sources/lsf-tools/2.0/summit/bin/autoreconf...not found Checking for program /sw/summit/xalt/1.2.0/bin/autoreconf...not found Checking for program /sw/summit/forge/20.0.1/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/autoreconf...not found Checking for program /sw/summit/gcc/6.4.0/bin/autoreconf...not found Checking for program /sw/summit/cuda/10.1.243/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/autoreconf...not found Checking for program /sw/sources/hpss/bin/autoreconf...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/autoreconf...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/autoreconf...not found Checking for program /opt/ibm/csm/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.programs Running Executable WITHOUT threads to time it out Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /sw/sources/lsf-tools/2.0/summit/bin/libtoolize...not found Checking for program /sw/summit/xalt/1.2.0/bin/libtoolize...not found Checking for program /sw/summit/forge/20.0.1/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/libtoolize...not found Checking for program /sw/summit/gcc/6.4.0/bin/libtoolize...not found Checking for program /sw/summit/cuda/10.1.243/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/libtoolize...not found Checking for program /sw/sources/hpss/bin/libtoolize...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/libtoolize...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/libtoolize...not found Checking for program /opt/ibm/csm/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /sw/sources/lsf-tools/2.0/summit/bin/sh...not found Checking for program /sw/summit/xalt/1.2.0/bin/sh...not found Checking for program /sw/summit/forge/20.0.1/bin/sh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/sh...not found Checking for program /sw/summit/gcc/6.4.0/bin/sh...not found Checking for program /sw/summit/cuda/10.1.243/bin/sh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/sh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/sh...not found Checking for program /sw/sources/hpss/bin/sh...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/sh...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/sh...not found Checking for program /opt/ibm/csm/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/sed...not found Checking for program /sw/summit/xalt/1.2.0/bin/sed...not found Checking for program /sw/summit/forge/20.0.1/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/sed...not found Checking for program /sw/summit/gcc/6.4.0/bin/sed...not found Checking for program /sw/summit/cuda/10.1.243/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/sed...not found Checking for program /sw/sources/hpss/bin/sed...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/sed...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/sed...not found Checking for program /opt/ibm/csm/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Running Executable WITHOUT threads to time it out Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-hp5ZuT/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mv...not found Checking for program /sw/summit/xalt/1.2.0/bin/mv...not found Checking for program /sw/summit/forge/20.0.1/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/mv...not found Checking for program /sw/summit/gcc/6.4.0/bin/mv...not found Checking for program /sw/summit/cuda/10.1.243/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/mv...not found Checking for program /sw/sources/hpss/bin/mv...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mv...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mv...not found Checking for program /opt/ibm/csm/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/cp...not found Checking for program /sw/summit/xalt/1.2.0/bin/cp...not found Checking for program /sw/summit/forge/20.0.1/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/cp...not found Checking for program /sw/summit/gcc/6.4.0/bin/cp...not found Checking for program /sw/summit/cuda/10.1.243/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/cp...not found Checking for program /sw/sources/hpss/bin/cp...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/cp...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/cp...not found Checking for program /opt/ibm/csm/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/grep...not found Checking for program /sw/summit/xalt/1.2.0/bin/grep...not found Checking for program /sw/summit/forge/20.0.1/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/grep...not found Checking for program /sw/summit/gcc/6.4.0/bin/grep...not found Checking for program /sw/summit/cuda/10.1.243/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/grep...not found Checking for program /sw/sources/hpss/bin/grep...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/grep...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/grep...not found Checking for program /opt/ibm/csm/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/rm...not found Checking for program /sw/summit/xalt/1.2.0/bin/rm...not found Checking for program /sw/summit/forge/20.0.1/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/rm...not found Checking for program /sw/summit/gcc/6.4.0/bin/rm...not found Checking for program /sw/summit/cuda/10.1.243/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/rm...not found Checking for program /sw/sources/hpss/bin/rm...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/rm...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/rm...not found Checking for program /opt/ibm/csm/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/diff...not found Checking for program /sw/summit/xalt/1.2.0/bin/diff...not found Checking for program /sw/summit/forge/20.0.1/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/diff...not found Checking for program /sw/summit/gcc/6.4.0/bin/diff...not found Checking for program /sw/summit/cuda/10.1.243/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/diff...not found Checking for program /sw/sources/hpss/bin/diff...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/diff...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/diff...not found Checking for program /opt/ibm/csm/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Running Executable WITHOUT threads to time it out Executing: "/usr/bin/diff" -w "/tmp/petsc-hp5ZuT/config.programs/diff1" "/tmp/petsc-hp5ZuT/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /ccs/home/adams/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Defined make macro "PYTHON" to "/usr/bin/python" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/m4...not found Checking for program /sw/summit/xalt/1.2.0/bin/m4...not found Checking for program /sw/summit/forge/20.0.1/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/m4...not found Checking for program /sw/summit/gcc/6.4.0/bin/m4...not found Checking for program /sw/summit/cuda/10.1.243/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/m4...not found Checking for program /sw/sources/hpss/bin/m4...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/m4...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/m4...not found Checking for program /opt/ibm/csm/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 1.876982 ================================================================================ TEST consistencyChecks from config.packages.make(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.make(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:931) TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:931) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureMake from config.packages.make(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/make.py:96) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Running Executable WITHOUT threads to time it out Executing: gmake --version stdout: GNU Make 3.82 Built for powerpc64le-redhat-linux-gnu Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gmake...not found Checking for program /sw/summit/xalt/1.2.0/bin/gmake...not found Checking for program /sw/summit/forge/20.0.1/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/gmake...not found Checking for program /sw/summit/gcc/6.4.0/bin/gmake...not found Checking for program /sw/summit/cuda/10.1.243/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/gmake...not found Checking for program /sw/sources/hpss/bin/gmake...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gmake...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gmake...not found Checking for program /opt/ibm/csm/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/make...not found Checking for program /sw/summit/xalt/1.2.0/bin/make...not found Checking for program /sw/summit/forge/20.0.1/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/make...not found Checking for program /sw/summit/gcc/6.4.0/bin/make...not found Checking for program /sw/summit/cuda/10.1.243/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/make...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/make...not found Checking for program /sw/sources/hpss/bin/make...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/make...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/make...not found Checking for program /opt/ibm/csm/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" =============================================================================== ***** WARNING: You have a version of GNU make older than 4.0. It will work, but may not support all the parallel testing options. You can install the latest GNU make with your package manager, such as brew or macports, or use the --download-make option to get the latest GNU make ***** =============================================================================== ================================================================================ TEST setupGNUMake from config.packages.make(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/make.py:150) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST configureMakeNP from config.packages.make(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/make.py:197) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 128 cores: using make_np = 59 Defined make macro "MAKE_NP" to "59" Defined make macro "MAKE_TEST_NP" to "49" Defined make macro "MAKE_LOAD" to "166.4" Defined make macro "NPMAX" to "128" child config.packages.make 0.030645 ================================================================================ TEST consistencyChecks from config.packages.thrust(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.thrust(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:931) TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:931) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.000906 ================================================================================ TEST consistencyChecks from config.packages.cuda(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.cuda(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:844) TESTING: checkDependencies from config.packages.cuda(config/BuildSystem/config/package.py:844) ================================================================================ TEST configureLibrary from config.packages.cuda(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/cuda.py:93) TESTING: configureLibrary from config.packages.cuda(config/BuildSystem/config/packages/cuda.py:93) ================================================================================== Checking for a functional cuda All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.packages.cuda Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.2.0/bin/nvcc...not found Checking for program /sw/summit/forge/20.0.1/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.243/bin/nvcc...found Defined make macro "SYSTEMNVCC" to "/sw/summit/cuda/10.1.243/bin/nvcc" CUDA: DirPath not found.. skipping: /sw/summit/cuda/10.1.243/lib Checking for library in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a'] Contents: ['rpm', 'LICENSE', 'README', 'bin', 'compat', 'doc', 'extras', 'include', 'lib64', 'libnsight', 'libnvvp', 'nsightee_plugins', 'nvml', 'nvvm', 'samples', 'share', 'targets', 'tools', 'version.txt', 'nsight-systems', 'nsight-compute'] ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['/sw/summit/cuda/10.1.243/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -Wl,-rpath,/sw/summit/cuda/10.1.243/lib64 -L/sw/summit/cuda/10.1.243/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -lstdc++ -ldl Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" Checking for optional headers [] in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/include'] ================================================================================ TEST checkInclude from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/sw/summit/cuda/10.1.243/include'] Found header files [] in ['/sw/summit/cuda/10.1.243/include'] Checking for headers ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.243/include'] ================================================================================ TEST checkInclude from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in ['/sw/summit/cuda/10.1.243/include'] Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.243/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in ['/sw/summit/cuda/10.1.243/include'] Checking for size of type: teststruct Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking for size of type: teststruct Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking if sizeof(void*) in CUDA is the same as with regular compiler Checking for size of type: void * Running Executable WITHOUT threads to time it out Executing: nvcc -c -o /tmp/petsc-hp5ZuT/config.types/conftest.o -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.types -Wno-deprecated-gpu-targets /tmp/petsc-hp5ZuT/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "HAVE_CUDA" to "1" ================================================================================ TEST checkVersion from config.packages.cuda(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:995) TESTING: checkVersion from config.packages.cuda(config/BuildSystem/config/package.py:995) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.packages.cuda -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers -I/sw/summit/cuda/10.1.243/include /tmp/petsc-hp5ZuT/config.packages.cuda/conftest.c For cuda need 7.5 <= 10.1 <= ================================================================================ TEST checkSharedLibrary from config.packages.cuda(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:927) TESTING: checkSharedLibrary from config.packages.cuda(config/BuildSystem/config/package.py:927) By default we don't care about checking if the library is shared child config.packages.cuda 2.096864 ================================================================================ TEST consistencyChecks from config.packages.OpenMPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:931) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:931) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000987 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST consistencyChecks from config.packages.MPICH(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:931) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:931) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.006338 ================================================================================ TEST consistencyChecks from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:844) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:844) ================================================================================ TEST configureLibrary from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:653) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:653) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.libraries/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MPI: [] ================================================================================ TEST checkInclude from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['mpi.h'] in Compiler specific search MPI: [] ================================================================================ TEST checkInclude from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.packages.cuda -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers /tmp/petsc-hp5ZuT/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in [] ================================================================================ TEST checkMPIDistro from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:514) TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:514) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /tmp/petsc-hp5ZuT/config.packages.MPI Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c:4:25: error: 'I_MPI_VERSION' undeclared here (not in a function) const char *mpich_ver = I_MPI_VERSION; ^~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c:4:17: error: 'I_MPI_NUMVERSION' undeclared here (not in a function) int mpich_ver = I_MPI_NUMVERSION; ^~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c:4:17: error: 'MVAPICH2_NUMVERSION' undeclared here (not in a function) int mpich_ver = MVAPICH2_NUMVERSION; ^~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c:4:17: error: 'MPICH_NUMVERSION' undeclared here (not in a function) int mpich_ver = MPICH_NUMVERSION; ^~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.packages.cuda -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.packages.MPI /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "10" Defined "HAVE_OMPI_MINOR_VERSION" to "03" Defined "HAVE_OMPI_RELEASE_VERSION" to "01" ================================================================================ TEST configureMPI2 from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:289) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:289) Check for functions added to the interface in MPI-2 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c:6:94: warning: initialization makes pointer from integer without a cast [-Wint-conversion] int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; ^ /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c:6:94: note: (near initialization for 'old_types[1]') Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:334) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:334) Check for functions added to the interface in MPI-3 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c:7:24: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^~ /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c:8:25: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } Defined "HAVE_MPI_GPU_AWARE" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c:6:30: warning: 'win' is used uninitialized in this function [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -I/tmp/petsc-hp5ZuT/config.utilities.closure -I/tmp/petsc-hp5ZuT/config.setCompilers -I/tmp/petsc-hp5ZuT/config.compilers -I/tmp/petsc-hp5ZuT/config.headers -I/tmp/petsc-hp5ZuT/config.utilities.cacheDetails -I/tmp/petsc-hp5ZuT/config.functions -I/tmp/petsc-hp5ZuT/config.utilities.featureTestMacros -I/tmp/petsc-hp5ZuT/config.utilities.missing -I/tmp/petsc-hp5ZuT/config.libraries -I/tmp/petsc-hp5ZuT/config.types -I/tmp/petsc-hp5ZuT/PETSc.options.scalarTypes -I/tmp/petsc-hp5ZuT/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.c:6:47: warning: 'win' is used uninitialized in this function [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /tmp/petsc-hp5ZuT/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -DFP_DIM=2 /tmp/petsc-hp5ZuT/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:176) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:176) Checking for location of mpiexec Checking for program /sw/sources/lsf-tools/2.0/summit/bin/jsrun...not found Checking for program /sw/summit/xalt/1.2.0/bin/jsrun...found Defined make macro "MPIEXEC" to "jsrun -g1" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/jsrun...not found Checking for program /sw/summit/xalt/1.2.0/bin/jsrun...found Defined make macro "MPIEXECEXECUTABLE" to "/sw/summit/xalt/1.2.0/bin/jsrun -g1" Running Executable with threads to time it out at 60 Executing: jsrun -g1 -n 1 printenv Unable to run jsrun -g1 with option "-n 1 printenv" This could be ok, some MPI implementations such as SGI produce a non-zero status with non-MPI programs Error: It is only possible to use js commands within a job allocation unless CSM is running 09-21-2020 11:17:59:470 30385 main: Error initializing RM connection. Exiting. Defined make macro "MPIEXEC" to "jsrun -g1" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ping...not found Checking for program /sw/summit/xalt/1.2.0/bin/ping...not found Checking for program /sw/summit/forge/20.0.1/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/ping...not found Checking for program /sw/summit/gcc/6.4.0/bin/ping...not found Checking for program /sw/summit/cuda/10.1.243/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/ping...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/ping...not found Checking for program /sw/sources/hpss/bin/ping...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ping...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ping...not found Checking for program /opt/ibm/csm/bin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/bin/ping...found Defined make macro "PING" to "ping" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/hostname...not found Checking for program /sw/summit/xalt/1.2.0/bin/hostname...not found Checking for program /sw/summit/forge/20.0.1/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/bin/hostname...not found Checking for program /sw/summit/gcc/6.4.0/bin/hostname...not found Checking for program /sw/summit/cuda/10.1.243/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.18.2-cirtl5oah4d6bequfcoji6jbetertrna/bin/hostname...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-cnvxicgf5j4ap64qi6v5gxp67hmrjz43/bin/hostname...not found Checking for program /sw/sources/hpss/bin/hostname...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hostname...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hostname...not found Checking for program /opt/ibm/csm/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 10 Executing: hostname stdout: login3 Return code from hostname: 0 Testing ping on hostname Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable with threads to time it out at 10 Executing: ping -c 2 login3 **** Configure header /tmp/petsc-hp5ZuT/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CUDA 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_GPU_AWARE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 10 #define PETSC_HAVE_OMPI_MINOR_VERSION 03 #define PETSC_HAVE_OMPI_RELEASE_VERSION 01 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_VERSION_BRANCH_GIT "adams/plex-noprealloc-fix" #define PETSC_VERSION_DATE_GIT "2020-09-21 11:07:48 -0400" #define PETSC_VERSION_GIT "v3.13.5-2949-g7143f94" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** C specific Configure header /tmp/petsc-hp5ZuT/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Exception: Your hostname will not work with MPI, perhaps you have VPN running whose network settings may not play well with MPI or your network is misconfigured ******************************************************************************* File "/autofs/nccs-svm1_home1/adams/petsc/config/configure.py", line 452, in petsc_configure framework.configure(out = sys.stdout) File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/framework.py", line 1251, in configure self.processChildren() File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/framework.py", line 1240, in processChildren self.serialEvaluation(self.childGraph) File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/framework.py", line 1215, in serialEvaluation child.configure() File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py", line 1115, in configure self.executeTest(self.configureLibrary) File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/base.py", line 140, in executeTest ret = test(*args,**kargs) File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py", line 672, in configureLibrary self.executeTest(self.configureMPIEXEC) File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/base.py", line 140, in executeTest ret = test(*args,**kargs) File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py", line 270, in configureMPIEXEC raise RuntimeError("Exception: "+errormessage) ================================================================================ Finishing configure run at Mon, 21 Sep 2020 11:17:59 -0400 ================================================================================