Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ ================================================================================ Starting configure run at Thu, 17 Sep 2020 21:49:20 -0400 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-mpi-dir=/usr/local/Cellar/mpich/3.3.2_1 COPTFLAGS="-g -O0" CXXOPTFLAGS="-g -O0" FOPTFLAGS="-g -O0 -fallow-argument-mismatch" --download-metis=1 --download-parmetis=1 --download-viennacl --download-kokkos=0 --download-p4est=1 --with-zlib=1 --download-triangle=1 --download-hdf5=1 -with-cuda=0 --with-x=0 --with-debugging=1 PETSC_ARCH=arch-macosx-gnu-g --with-64-bit-indices=0 --with-openmp=0 Working directory: /Users/markadams/Codes/petsc Machine platform: ('Darwin', 'MarksMac-302.local', '19.6.0', 'Darwin Kernel Version 19.6.0: Thu Jun 18 20:49:00 PDT 2020; root:xnu-6153.141.1~1/RELEASE_X86_64', 'x86_64', 'i386') Python version: 2.7.16 (default, Jun 5 2020, 22:59:21) [GCC 4.2.1 Compatible Apple LLVM 11.0.3 (clang-1103.0.29.20) (-macos10.15-objc- ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py:930) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:930) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking for program /usr/local/opt/llvm/bin/lldb...found Defined make macro "LLDB" to "/usr/local/opt/llvm/bin/lldb" Defined "USE_DEBUGGER" to ""lldb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking for program /usr/local/opt/llvm/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/local/opt/llvm/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/local/opt/llvm/bin/dsymutil" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Defined "DO_NOT_SWAP_CHILD_FOR_DEBUGGER" to "1" child config.utilities.debuggers 0.019821 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/Users/markadams/Codes/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 13 #define PETSC_VERSION_SUBMINOR 5 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.002111 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/Users/markadams/Codes/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000293 ================================================================================ TEST configureGit from config.sourceControl(/Users/markadams/Codes/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/opt/llvm/bin/git...not found Checking for program /opt/anaconda2/bin/git...not found Checking for program /opt/anaconda2/bin/git...not found Checking for program /Users/markadams/opt/miniconda2/bin/git...not found Checking for program /opt/miniconda2/bin/git...not found Checking for program /Users/markadams/opt/miniconda3/bin/git...not found Checking for program /usr/local/opt/texinfo/bin/git...not found Checking for program /Users/markadams/homebrew/sbin/git...not found Checking for program /Users/markadams/homebrew/bin/git...not found Checking for program /Users/markadams/homebrew/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 2.24.3 (Apple Git-128) ================================================================================ TEST configureMercurial from config.sourceControl(/Users/markadams/Codes/petsc/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/opt/llvm/bin/hg...not found Checking for program /opt/anaconda2/bin/hg...not found Checking for program /opt/anaconda2/bin/hg...not found Checking for program /Users/markadams/opt/miniconda2/bin/hg...not found Checking for program /opt/miniconda2/bin/hg...not found Checking for program /Users/markadams/opt/miniconda3/bin/hg...not found Checking for program /usr/local/opt/texinfo/bin/hg...not found Checking for program /Users/markadams/homebrew/sbin/hg...not found Checking for program /Users/markadams/homebrew/bin/hg...not found Checking for program /Users/markadams/homebrew/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /sbin/hg...not found Checking for program /Library/TeX/texbin/hg...not found Checking for program /opt/X11/bin/hg...not found Checking for program /Library/Apple/usr/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program hg...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/hg...not found Unable to find programs ['hg'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['llvm-opt-report', 'llvm-lipo', 'modularize', 'llvm-cxxdump', 'clang-change-namespace', 'verify-uselistorder', 'llvm-cvtres', 'llvm-strings', 'clang-move', 'llvm-install-name-tool', 'clangd-xpc-test-client', 'llvm-config', 'clang', 'llvm-lto2', 'llvm-cfi-verify', 'llvm-cov', 'lld', 'llc', 'llvm-link', 'not', 'llvm-symbolizer', 'llvm-objdump', 'clang-refactor', 'clang-rename', 'clangd', 'llvm-mca', 'set-xcode-analyzer', 'llvm-rc', 'clang-include-fixer', 'llvm-addr2line', 'llvm-jitlink', 'llvm-xray', 'clang-format', 'lldb', 'llvm-rtdyld', 'FileCheck', 'clang-check', 'llvm-lto', 'pp-trace', 'llvm-c-test', 'c-index-test', 'llvm-dwp', 'count', 'llvm-reduce', 'llvm-elfabi', 'llvm-mc', 'clang-reorder-fields', 'llvm-exegesis', 'llvm-readelf', 'ld.lld', 'llvm-as', 'clang-query', 'scan-build', 'llvm-nm', 'llvm-lib', 'llvm-undname', 'clang-offload-bundler', 'lldb-argdumper', 'lldb-server', 'llvm-ar', 'find-all-symbols', 'clang-cl', 'llvm-dis', 'llvm-size', 'dsymutil', 'obj2yaml', 'clang-tidy', 'wasm-ld', 'llvm-dlltool', 'llvm-readobj', 'llvm-cxxfilt', 'bugpoint', 'llvm-pdbutil', 'clang-offload-wrapper', 'clang-doc', 'llvm-ifs', 'lli', 'llvm-PerfectShuffle', 'llvm-tblgen', 'lli-child-target', 'clang-scan-deps', 'clang++', 'sancov', 'darwin-debug', 'llvm-dwarfdump', 'opt', 'clang-cpp', 'clang-extdef-mapping', 'yaml-bench', 'llvm-cat', 'git-clang-format', 'llvm-profdata', 'clang-apply-replacements', 'llvm-objcopy', 'llvm-extract', 'yaml2obj', 'sanstats', 'llvm-split', 'llvm-bcanalyzer', 'clang-10', 'lldb-instr', 'hmaptool', 'llvm-stress', 'llvm-diff', 'scan-view', 'diagtool', 'llvm-modextract', 'clang-import-test', 'lld-link', 'llvm-strip', 'llvm-mt', 'ld64.lld', 'lldb-vscode', 'llvm-ranlib', 'llvm-cxxmap'] Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /Users/markadams/opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda2/bin' Warning accessing /opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/miniconda2/bin' Warning accessing /Users/markadams/opt/miniconda3/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda3/bin' ['texi2pdf', 'pod2texi', 'texindex', 'info', 'texi2dvi', 'pdftexi2dvi', 'texi2any', 'makeinfo', 'install-info'] Warning accessing /Users/markadams/homebrew/sbin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/sbin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' ['ndmetis', 'ppmtouil', 'pstoedit', 'lto-dump-10', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'msgconv', 'pbmtonokia', 'leaftoppm', 'g-ir-compiler', 'event_rpcgen.py', 'pnminvert', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'msggrep', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'autopoint', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'g-ir-annotation-tool', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'x86_64-apple-darwin19-gcc-ranlib-10', 'pbmtog3', 'gcc-ranlib-10', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'msgcomm', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gfortran', 'opj_dump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'png-fix-itxt', 'gcov-dump-10', 'pamslice', 'rst2latex.py', 'gfortran-10', 'c++-10', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'apm', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'atom', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'easy_install-3.8', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'VBoxManage', 'pngfix', 'zeisstopnm', 'vagrant', 'xmlto', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'gcov-tool-10', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'pktopbm', 'pgmtolispm', 'x86_64-apple-darwin19-c++-10', 'fiascotopnm', 'pamdepth', 'update-mime-database', 'VBoxHeadless', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'g-ir-generate', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'pnmsmooth', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'ppmtopi1', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'cpp-10', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'x86_64-apple-darwin19-gcc-ar-10', 'mpivars', 'msgen', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'python3.8', 'pnmtosir', 'pambackground', 'g-ir-inspect', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'msgmerge', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'envsubst', 'xz', 'ppmdither', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'VirtualBox', 'x86_64-apple-darwin19-gcc-nm-10', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'msginit', 'mongoose', 'rbox', 'lua', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'gcc-10', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'tiffset', 'tclsh', 'pip', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'gettext', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'gettext.sh', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'msgcmp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'g-ir-scanner', 'VBoxAutostart', 'dbtoepub', 'gcc-nm-10', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'ppmquant', 'g++-10', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'gcc-ar-10', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'h5diff', 'ppmtopgm', 'msgcat', 'pbmtopk', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'h5clear', 'psicc', 'pcretest', 'recode-sr-latin', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'jpgicc', 'pydoc3.8', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'fc-cache', 'ppmtopj', 'pampop9', 'sip', 'tclselect', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'msgexec', 'rst2xml.py', 'pelican-themes', 'pyuic5', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'ngettext', 'git-clang-format', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'gcov-10', 'dwebp', 'x86_64-apple-darwin19-gcc-10.2.0', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'x86_64-apple-darwin19-g++-10', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'idle3.8', 'h5repart', 'lzgrep', 'msgunfmt', 'pnmtoplainpnm', 'pamdeinterlace', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'msgfilter', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'python3.8-config', 'fc-conflist', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'x86_64-apple-darwin19-gfortran-10', 'pylupdate5', '2to3-3.8', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'msgfmt', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'msgattrib', 'imgcmp', 'pcregrep', 'tiff2rgba', 'x86_64-apple-darwin19-gcc-10', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'xgettext', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'xmlif', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'gettextize', 'pelican-import', 'VBoxVRDP', 'msguniq', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] ['ndmetis', 'ppmtouil', 'pstoedit', 'lto-dump-10', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'msgconv', 'pbmtonokia', 'leaftoppm', 'g-ir-compiler', 'event_rpcgen.py', 'pnminvert', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'msggrep', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'autopoint', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'g-ir-annotation-tool', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'x86_64-apple-darwin19-gcc-ranlib-10', 'pbmtog3', 'gcc-ranlib-10', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'msgcomm', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gfortran', 'opj_dump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'png-fix-itxt', 'gcov-dump-10', 'pamslice', 'rst2latex.py', 'gfortran-10', 'c++-10', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'apm', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'atom', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'easy_install-3.8', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'VBoxManage', 'pngfix', 'zeisstopnm', 'vagrant', 'xmlto', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'gcov-tool-10', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'pktopbm', 'pgmtolispm', 'x86_64-apple-darwin19-c++-10', 'fiascotopnm', 'pamdepth', 'update-mime-database', 'VBoxHeadless', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'g-ir-generate', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'pnmsmooth', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'ppmtopi1', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'cpp-10', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'x86_64-apple-darwin19-gcc-ar-10', 'mpivars', 'msgen', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'python3.8', 'pnmtosir', 'pambackground', 'g-ir-inspect', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'msgmerge', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'envsubst', 'xz', 'ppmdither', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'VirtualBox', 'x86_64-apple-darwin19-gcc-nm-10', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'msginit', 'mongoose', 'rbox', 'lua', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'gcc-10', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'tiffset', 'tclsh', 'pip', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'gettext', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'gettext.sh', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'msgcmp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'g-ir-scanner', 'VBoxAutostart', 'dbtoepub', 'gcc-nm-10', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 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'pamtotiff', 'glib-genmarshal', 'pcre-config', 'ngettext', 'git-clang-format', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'gcov-10', 'dwebp', 'x86_64-apple-darwin19-gcc-10.2.0', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'x86_64-apple-darwin19-g++-10', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'idle3.8', 'h5repart', 'lzgrep', 'msgunfmt', 'pnmtoplainpnm', 'pamdeinterlace', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 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'instmodsh5.18', 'tnameserv', 'true', 'afinfo', 'hidutil', 'ldapadd', 'pwpolicy', 'profiles', 'yacc', 'kswitch', 'xcodebuild', 'jobs', 'c89', 'sudo', 'bioutil', 'splain5.28', 'tmdiagnose', 'plockstat', 'xgettext5.18.pl', 'serialver', 'afida', 'pgrep', 'yes', 'lessecho', 'sdiff', 'afscexpand', 'treereg5.18', 'cpan5.18', 'db_deadlock', 'ldapcompare', 'unexpand', 'git-upload-pack', 'ssh-copy-id', 'grolj4', 'fixproc', 'debinhex.pl', 'lorder', 'pod2html5.18', 'ranlib', 'javadoc', 'tput', 'fgrep', 'json_pp5.18', 'sigdist.d', 'ppdhtml', 'libnetcfg5.18', 'auval', 'erb', 'dappprof', 'openssl', 'instmodsh5.28', 'drutil', 'jinfo', 'ip2cc5.28', 'splain', 'pmset', 'xmlcatalog', 'zcmp', 'ptargrep5.28', 'lwp-mirror5.28', 'rwsnoop', 'jstatd', 'htmltree5.28', 'lpr', 'layerutil', 'snmptest', 'mib2c-update', 'grog', 'creatbyproc.d', 'pstruct', 'fdesetup', 'flex', 'hostinfo', 'jcontrol', 'MergePef', 'lpstat', 'SetFile', 'pl2pm5.28', 'pod2html', 'rebase', 'tar', 'rdoc', 'uptime', 's2p', 'pidpersec.d', 'xpath5.18', 'schemagen', 'moo-outdated5.28', 'pod2usage5.28', 'dbiprof5.28', 'cvcp', 'package-stash-conflicts5.28', 'false', 'zegrep', 'memory_pressure', 'uncompress', 'lwp-request', 'ncurses5.4-config', 'findrule5.28', 'sampleproc', 'db_recover', 'ptar5.28', 'h2xs5.28', 'nmedit', 'filebyproc.d', 'bison', 'tclsh8.5', 'jdeps', 'productbuild', 'zipinfo', 'diffstat', 'login', 'db_dump', 'smtpd.py', 'cpuctl', 'cpu_profiler.d', 'which', 'bundler', 'iopattern', 'finger', 'mig', 'sntp', 'klist', 'open', 'GetFileInfo', 'localedef', 'ruby', 'stringdups', 'htmltree', 'ptargrep5.18', 'git', 'tr', 'lwp-mirror5.18', 'htmltree5.18', 'banner', 'leave', 'jconsole', 'paste', 'RezWack', 'moo-outdated5.18', 'bzip2', 'pod2usage5.18', 'uucp', 'passwd', 'dbiprof5.18', 'package-stash-conflicts5.18', 'uuidgen', 'pl2pm5.18', 'install_name_tool', 'cmpdylib', 'makeinfo', 'php-config', 'zfgrep', 'xpath5.28', 'snfsdefrag', 'zipdetails', 'look', 'findrule5.18', 'col', 'dscacheutil', 'ptar5.18', 'zforce', 'lwp-mirror', 'malloc_history', 'cpio', 'nohup', 'kcc', 'ulimit', 'rails', 'bspatch', 'RezDet', 'hotspot.d', 'cvaffinity', 'gatherheaderdoc', 'ppdi', 'pcap-config', 'avmetareadwrite', 'update_dyld_shared_cache_root_mode', 'gen_bridge_metadata', 'gem', 'opendiff', 'h2xs5.18', 'talk', 'expect', 'jimage', 'lockstat', 'dapptrace', 'install-info', 'xattr', 'w', 'gunzip'] ['cat', 'echo', 'launchctl', 'df', 'pwd', 'test', 'csh', 'wait4path', 'unlink', 'sleep', 'stty', 'date', 'ed', 'expr', 'pax', 'bash', 'kill', 'sh', 'ps', 'link', 'tcsh', 'dd', 'mkdir', 'ksh', 'hostname', 'dash', 'rmdir', 'mv', 'ln', 'ls', 'cp', 'sync', 'zsh', 'chmod', 'rm', '['] ['dsconfigad', 'htdbm', 'netbiosd', 'postlock', 'systemsoundserverd', 'dseditgroup', 'avbdeviced', 'rpcinfo', 'BootCacheControl', 'weakpass_edit', 'periodic', 'accton', 'wfsctl', 'postalias', 'slapacl', 'edquota', 'sndiskmove', 'pdisk', 'amt', 'lpadmin', 'fdisk', 'sysadminctl', 'networksetup', 'envvars', 'ktutil', 'setquota', 'otctl', 'sncfgvalidate', 'php-fpm', 'AppleFileServer', 'dnctl', 'mDNSResponder', 'repquota', 'cupsfilter', 'checkgid', 'uuconv', 'sharing', 'vifs', 'ac', 'racoon', 'dsenableroot', 'xsanctl', 'kdcsetup', 'aslmanager', 'screencapture', 'htdigest', 'rtsold', 'chat', 'DevToolsSecurity', 'logresolve', 'cvdbset', 'KernelEventAgent', 'gpt', 'scutil', 'ioreg', 'ab', 'traceroute6', 'pwd_mkdb', 'sysctl', 'appsleepd', 'sshd', 'mDNSResponderHelper', 'authserver', 'sncfginstall', 'postmulti', 'lsof', 'pkgutil', 'slapindex', 'sc_auth', 'ioclasscount', 'uucico', 'firmwarepasswd', 'rarpd', 'tsig-keygen', 'kadmin.local', 'syslogd', 'taskpolicy', 'filecoordinationd', 'dot_clean', 'PasswordService', 'systemsetup', 'zdump', 'snmpd', 'ndp', 'coreaudiod', 'rpcbind', 'praudit', 'usernoted', 'postkick', 'postcat', 'netstat', 'lpc', 'slapadd', 'krbservicesetup', 'sncfgtemplate', 'slapconfig', 'rtadvd', 'httxt2dbm', 'distnoted', 'mtree', 'cupsdisable', 'lpmove', 'disktool', 'purge', 'rpc.statd', 'cupsctl', 'DirectoryService', 'notifyd', 'klist_cdhashes', 'dtrace', 'kextcache', 'cupsd', 'dbmmanage', 'languagesetup', 'skywalkctl', 'mkpassdb', 'postconf', 'createhomedir', 'ocspd', 'iostat', 'cvdb', 'sa', 'rpc.lockd', 'uuxqt', 'mkfile', 'softwareupdate', 'unsetpassword', 'zic', 'nfs4mapid', 'postsuper', 'htpasswd', 'rotatelogs', 'universalaccessd', 'audit', 'httpd', 'bluetoothaudiod', 'slapauth', 'slappasswd', 'localemanager', 'asr', 'cvupdatefs', 'bless', 'cvgather', 'xscertadmin', 'visudo', 'uusched', 'dsconfigldap', 'smbdiagnose', 'cfprefsd', 'auditd', 'uuchk', 'cvfsck', 'kextfind', 'diskutil', 'cvfsid', 'sso_util', 'vsdbutil', 'ddns-confgen', 'ioalloccount', 'uasysdiagnose', 'dev_mkdb', 'hdik', 'slapdn', 'vpnd', 'postqueue', 'setkey', 'tpctl', 'repairHomePermissions', 'spindump', 'cupsreject', 'traceroute', 'quotaoff', 'newsyslog', 'postfix', 'cvfsdb', 'snmptrapd', 'chroot', 'arp', 'cupsaccept', 'nvram', 'chown', 'mkextunpack', 'sncfgremove', 'sncfgquery', 'postlog', 'installer', 'pppd', 'httpd-wrapper', 'system_profiler', 'fcgistarter', 'bluetoothd', 'slapschema', 'kadmin', 'spray', 'cvversions', 'kextlibs', 'tcpdump', 'xartutil', 'securityd', 'nlcontrol', 'quotaon', 'spctl', 'vipw', 'gssd', 'slaptest', 'automount', 'scselect', 'envvars-std', 'graphicssession', 'ckksctl', 'lpinfo', 'smbd', 'serverinfo', 'cvmkfs', 'postmap', 'postdrop', 'cupsenable', 'cron', 'systemstats', 'bnepd', 'kextstat', 'cvlabel', 'sendmail', 'systemkeychain', 'kcditto', 'slapcat', 'ipconfig', 'auditreduce', 'cvadmin', 'WirelessRadioManagerd', 'apachectl', 'htcacheclean'] ['mount_hfs', 'mount_apfs', 'md5', 'fsck', 'mount_udf', 'quotacheck', 'mount_cd9660', 'ping', 'fsck_exfat', 'mount_exfat', 'fsck_udf', 'shutdown', 'route', 'mount_webdav', 'fsck_hfs', 'nfsd', 'reboot', 'nfsiod', 'fsck_cs', 'fsck_apfs', 'fstyp_msdos', 'disklabel', 'mount_msdos', 'fsck_msdos', 'ifconfig', 'halt', 'mount_9p', 'mount_ntfs', 'rtsol', 'newfs_apfs', 'umount', 'fstyp', 'kextunload', 'mpioutil', 'fstyp_ntfs', 'emond', 'mount_nfs', 'newfs_udf', 'mount_ftp', 'pfctl', 'mknod', 'fstyp_udf', 'dmesg', 'mount', 'fibreconfig', 'fstyp_hfs', 'newfs_hfs', 'dynamic_pager', 'launchd', 'newfs_exfat', 'apfs_hfs_convert', 'nologin', 'mount_afp', 'mount_smbfs', 'ping6', 'kextload', 'mount_cddafs', 'mount_fdesc', 'newfs_msdos', 'mount_acfs', 'mount_devfs'] ['luajittex', 'lollipop', 't1disasm', 'chktex', 'rubikrotation', 'lily-rebuild-pdfs', 'weave', 'mag', 'man', 'ebb', 'prepmx', 'mktexlsr', 'gsftopk', 'upmendex', 'dvibook', 'kpsewhere', 'rumakeindex', 'fontinst', 'cef5conv', 'lacheck', 'httexi', 'lily-image-commands', 'texloganalyser', 'dvilj', 'patgen', 'uptex', 'exceltex', 'pdvitype', 'texconfig-sys', 'xmltex', 'vlna', 'texsis', 'dvipdft', 'urlbst', 'pdfcslatex', 'afm2afm', 'cefconv', 'uplatex-dev', 'sjisconv', 'tex2xindy', 'musixtex', 'pdfcsplain', 'opl2ofm', 'de-macro', 'bbl2bib', 'ltx2crossrefxml', 'pdftex', 'r-mpost', 'dvitodvi', 'gftodvi', 'dviconcat', 'texluajitc', 'dvipng', 'pdflatex-dev', 'komkindex', 'tex', 'sty2dtx', 'ppltotf', 'yplan', 'eplain', 'eptex', 'lily-glyph-commands', 'htmex', 'texlua', 'htxelatex', 'xasy', 'fmtutil-user', 'wovp2ovf', 'dvilualatex', 'cefsconv', 'context', 'platex', 'allec', 'adhocfilelist', 'kpsetool', 'makejvf', 'texdoctk', 'xelatex-dev', 'vptovf', 'tex4ht', 'texluajit', 'mtxrunjit', 'uplatex', 'musixflx', 'pfarrei', 'mf', 'latexdiff-vc', 'ttfdump', 'etex', 'fig4latex', 'bibexport', 'ttf2tfm', 'latexmk', 'pmpost', 'ctwill', 'pst2pdf', 'wordcount', 'texconfig-dialog', 'luahbtex', 'lwarpmk', 'dvilj2p', 'dviinfox', 'ttf2kotexfont', 'ctanbib', 'cweave', 'bg5+latex', 'pdfatfi', 'ptex2pdf', 'e2pall', 'kpsewhich', 'upbibtex', 'texdiff', 'mathspic', 'kanji-fontmap-creator', 'kanji-config-updmap', 'asy', 'typeoutfileinfo', 'chklref', 'upmpost', 'pdflatex', 'perltex', 'mkt1font', 'cefslatex', 'cjk-gs-integrate', 'chkdvifont', 'dvitype', 'pdfjadetex', 't1lint', 'jamo-normalize', 'fmtutil-sys', 'wofm2opl', 'dviasm', 'kpsestat', 'pdfxup', 'makedtx', 'pltotf', 'mkindex', 'dvilj6', 'r-pmpost', 'xindy.mem', 'xetex', 'latex', 'ps4pdf', 'multibibliography', 'teckit_compile', 'ttf2afm', 'biburl2doi', 'getmapdl', 'uptftopl', 'contextjit', 'bib2gls', 'texplate', 'match_parens', 'mkjobtexmf', 'updvitomp', 'ps2eps', 'pkfix-helper', 'chkweb', 'arlatex', 'pn2pdf', 'pdfclose', 'xindex', 'clxelatex', 'dosepsbin', 'jadetex', 'a2ping', 'bibzbladd', 'ovf2ovp', 'mfluajit-nowin', 'mpost', 'texosquery-jre5', 'texhash', 'convbkmk', 'thumbpdf', 'pkfix', 'dvihp', 'hbf2gf', 'xindy.run', 'texcount', 'texmfstart', 'latexrevise', 'cefpdflatex', 'texluac', 'dvicopy', 'ctie', 'pdftex-quiet', 'euptex', 'pdftosrc', 'mf-nowin', 'ctangle', 'omfonts', 't1asm', 'mflua-nowin', 'cluttex', 'svn-multi', 'mk4ht', 'afm2tfm', 'pdfopen', 'fragmaster', 'ebong', 'ctanify', 'pygmentex', 'texdef', 'luatex', 'cslatex', 'synctex', 'texdirflatten', 'gbkpdflatex', 'xdvipdfmx', 'sjispdflatex', 'makeindex', 'dviluatex', 'mkofm', 'dvipdfmx', 'psbook', 'dvispc', 'csplain', 'ttftotype42', 'mft', 't1rawafm', 'fmtutil', 'ctwill-twinx', 'simpdftex', 'depythontex', 'otfinfo', 'latexindent', 'kanji-config-updmap-sys', 'extconv', 'disdvi', 'pdvitomp', 'dvipdfm', 'texliveonfly', 'allneeded', 'htcontext', 't1testpage', 'biber', 'dv2dt', 'xindy', 'pdfbook2', 't1unmac', 'xelatex', 'webquiz', 'kpsepath', 'diadia', 'makeglossaries', 'cef5pdflatex', 'autoinst', 'dvilualatex-dev', 'mkpic', 'splitindex', 'repstopdf', 'otangle', 'mfplain', 'latexfileversion', 'latex-git-log', 'inimf', 'lualatex-dev', 'latex2man', 'ps2pk', 'htxetex', 'l3build', 'ptftopl', 'ptex', 'gbklatex', 't1binary', 'bibtex', 't1dotlessj', 'mktexpk', 'detex', 'htlatex', 'odvicopy', 'dvidvi', 'extractres', 'extractbb', 'tie', 'latexdef', 'tlmgr', 'arara', 'ctan-o-mat', 'rubibtex', 'dvigif', 'gftype', 'ketcindy', 'kpseaccess', 'luacsplain', 'cachepic', 'srcredact', 'dtxgen', 'mmafm', 'pktype', 'platex-dev', 'kpsexpand', 'pktogf', 'msxlint', 't1reencode', 'vftovp', 'xhlatex', 'ht', 'mendex', 'make4ht', 'ceflatex', 'texlinks', 'pmxchords', 'mptopdf', 'afm2pl', 'mktexmf', 'lamed', 'gftopk', 'ulqda', 'dvilj4l', 'pooltype', 'bg5latex', 'bibmradd', 'aleph', 'wovf2ovp', 'pdfetex', 'dvi2tty', 'ofm2opl', 'pslatex', 'initex', 'latexpand', 'pamphletangler', 'mkgrkindex', 'mtxrun', 'epsffit', 'listings-ext.sh', 'mktexfmt', 'scor2prt', 'psnup', 'ot2kpx', 'allcm', 'pk2bm', 'dvitomp', 'texindy', 'vpl2vpl', 'luatools', 'cef5latex', 'ctwill-refsort', 'luajithbtex', 'bg5+pdflatex', 'dvisvgm', 'tex2aspc', 'bg5conv', 'deweb', 'tlcockpit', 'cfftot1', 'dviselect', 'odvitype', 'vpl2ovp', 'otp2ocp', 'latexdiff', 'dt2dv', 'bg5pdflatex', 'mf2pt1', 'psresize', 't1mac', 'epspdf', 'pythontex', 'bibtexu', 'authorindex', 'texosquery', 'tlshell', 'pdfxmltex', 'includeres', 't1ascii', 'pdflatexpicscale', 'mfluajit', 'axohelp', 'tangle', 'httex', 'texosquery-jre8', 'checkcites', 'bibtex8', 'dvi2fax', 'otftotfm', 'cefspdflatex', 'mmpfb', 'pfb2pfa', 'vpe', 'psselect', 'latex-dev', 'findhyph', 'gregorio', 'ovp2ovf', 'utf8mex', 'mflua', 'purifyeps', 'autosp', 'bundledoc', 'mllatex', 'tex4ebook', 'xdvi-xaw', 'sjislatex', 'rungs', 'dvilj4', 'ltxfileinfo', 'texconfig', 'updvitype', 'ltximg', 'updmap-user', 'dvips', 'convertgls2bib', 'latex2nemeth', 'pdfjam', 'epstopdf', 'outocp', 'pedigree', 'mkocp', 'kpsereadlink', 'ttf2pk', 'tpic2pdftex', 'kanji-config-updmap-user', 'psjoin', 'm-tx', 'uppltotf', 'texdoc', 'bbox', 'dvired', 'latex-papersize', 'makeglossaries-lite', 't4ht', 'xdvi', 'ps2frag', 'wopl2ofm', 'devnag', 'ctanupload', 'texexec', 'listbib', 'cllualatex', 'lualatex', 'pmxab', 'jfmutil', 'pdfmex', 'tftopl', 'mltex', 'amstex', 'pbibtex', 'pstops', 'optex', 'mex', 'bibdoiadd', 'updmap', 'dvipos', 'luaotfload-tool', 'epspdftk', 'updmap-sys', 'r-upmpost', 'mktextfm', 'texfot', 'checklistings', 'rpdfcrop', 'a5toa4', 'installfont-tl', 'pdfcrop', 'pdfannotextractor'] ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] ['rvictl'] ['ndmetis', 'ppmtouil', 'pstoedit', 'lto-dump-10', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'msgconv', 'pbmtonokia', 'leaftoppm', 'g-ir-compiler', 'event_rpcgen.py', 'pnminvert', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'msggrep', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'autopoint', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'g-ir-annotation-tool', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'x86_64-apple-darwin19-gcc-ranlib-10', 'pbmtog3', 'gcc-ranlib-10', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'msgcomm', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gfortran', 'opj_dump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'png-fix-itxt', 'gcov-dump-10', 'pamslice', 'rst2latex.py', 'gfortran-10', 'c++-10', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'apm', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'atom', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'easy_install-3.8', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'VBoxManage', 'pngfix', 'zeisstopnm', 'vagrant', 'xmlto', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'gcov-tool-10', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'pktopbm', 'pgmtolispm', 'x86_64-apple-darwin19-c++-10', 'fiascotopnm', 'pamdepth', 'update-mime-database', 'VBoxHeadless', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'g-ir-generate', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'pnmsmooth', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'ppmtopi1', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'cpp-10', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'x86_64-apple-darwin19-gcc-ar-10', 'mpivars', 'msgen', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'python3.8', 'pnmtosir', 'pambackground', 'g-ir-inspect', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'msgmerge', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'envsubst', 'xz', 'ppmdither', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'VirtualBox', 'x86_64-apple-darwin19-gcc-nm-10', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'msginit', 'mongoose', 'rbox', 'lua', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'gcc-10', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'tiffset', 'tclsh', 'pip', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'gettext', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'gettext.sh', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'msgcmp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'g-ir-scanner', 'VBoxAutostart', 'dbtoepub', 'gcc-nm-10', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'ppmquant', 'g++-10', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'gcc-ar-10', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'h5diff', 'ppmtopgm', 'msgcat', 'pbmtopk', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'h5clear', 'psicc', 'pcretest', 'recode-sr-latin', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'jpgicc', 'pydoc3.8', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'fc-cache', 'ppmtopj', 'pampop9', 'sip', 'tclselect', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'msgexec', 'rst2xml.py', 'pelican-themes', 'pyuic5', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'ngettext', 'git-clang-format', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'gcov-10', 'dwebp', 'x86_64-apple-darwin19-gcc-10.2.0', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'x86_64-apple-darwin19-g++-10', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'idle3.8', 'h5repart', 'lzgrep', 'msgunfmt', 'pnmtoplainpnm', 'pamdeinterlace', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'msgfilter', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'python3.8-config', 'fc-conflist', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'x86_64-apple-darwin19-gfortran-10', 'pylupdate5', '2to3-3.8', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'msgfmt', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'msgattrib', 'imgcmp', 'pcregrep', 'tiff2rgba', 'x86_64-apple-darwin19-gcc-10', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'xgettext', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'xmlif', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'gettextize', 'pelican-import', 'VBoxVRDP', 'msguniq', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] Warning accessing gives errors: [Errno 2] No such file or directory: '' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.sourceControl 0.025014 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/Users/markadams/Codes/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Running Executable WITHOUT threads to time it out Executing: ['git', 'describe', '--match=v*'] stdout: v3.13.5-2892-g7f14b7aad2 Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 7f14b7aad2032016e11ac8644a658b6b3372d390 Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2020-09-17 17:25:18 +0000 Running Executable WITHOUT threads to time it out Executing: ['git', 'branch'] stdout: adams/feature-dmplex-coloring adams/feature-dmplex-coloring-rebased adams/feature-dmplex-snes-landau adams/feature-dmplex-snes-landau-kokkos adams/feature-dmplex-snes-landau-kokkos-barry adams/feature-dmplex-snes-landau-kokkos-barry-rebased adams/feature-landau-gpuassembly adams/feature-mat-cuda adams/landau-single-fix adams/manpages-add-gpus adams/mat-options-bug adams/plex-locate-log adams/plex-noprealloc-fix adams/snes-ex56-eigest knepley/feature-swarm-fortran knepley/feature-swarm-fortran-rebased mark/feature-picell mark/feature-xgc-interface-omp mark/feature-xgc-interface-rebase-v2 * master stefanozampini/feature-cusparse-notransgen-herm Defined "VERSION_GIT" to ""v3.13.5-2892-g7f14b7aad2"" Defined "VERSION_DATE_GIT" to ""2020-09-17 17:25:18 +0000"" Defined "VERSION_BRANCH_GIT" to ""master"" child PETSc.options.petscclone 0.104470 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/Users/markadams/Codes/petsc/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/Users/markadams/Codes/petsc/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set configure hash file: arch-macosx-gnu-g/lib/petsc/conf/configure-hash does not match Uname: Darwin x86_64 PATH=/usr/local/opt/llvm/bin:/opt/anaconda2/bin:/opt/anaconda2/bin:/Users/markadams/opt/miniconda2/bin:/opt/miniconda2/bin:/Users/markadams/opt/miniconda3/bin:/usr/local/opt/texinfo/bin:/Users/markadams/homebrew/sbin:/Users/markadams/homebrew/bin:/Users/markadams/homebrew/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/Library/Apple/usr/bin:/usr/local/bin: args: --download-hdf5=1 --download-kokkos=0 --download-metis=1 --download-triangle=1 --download-viennacl --with-64-bit-indices=0 --with-debugging=1 --with-mpi=0 --with-openmp=0 --with-x=0 --with-zlib=1 -with-cuda=0 COPTFLAGS=-g -O0 CXXOPTFLAGS=-g -O0 FOPTFLAGS=-g -O0 -fallow-argument-mismatch 0169bc148250b8eddc3eef08208f0797272457f9e89313a8949def6d91df0612 config/BuildSystem/config/packages/viennacl.py 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f9ed94a93c2c41a2b3704a3f211d12d73f95b5414326b3ccd489dc4e645d70d7 config/PETSc/options/petscclone.py fa50ce2ffc5276810194eb42402771e303bbc5144e7d6ccea74753071f5c8e70 config/BuildSystem/config/packages/glut.py fae680d002c9add8721fed1166ceafec3f114619a9a297cda0b5e45f94ea7106 config/BuildSystem/config/packages/adblaslapack.py fb640bb9fcf78597d487715dc67dcb5d4bd38c6c8e7468590a0757f4a494606d config/BuildSystem/config/packages/strumpack.py fbb3e345e450de9321ccec4ad00e14dadaf5972678bfbe2f9071686ca33afd3e config/BuildSystem/config/packages/silo.py fc6e78fd700981c4f3b8acb29f59f75f0444097594d2b1f096cb85369b16f381 config/BuildSystem/config/packages/tchem.py fd2e3f9a4e85aa47c6b61907925afd068d7fe2cbe4fd87316ac0b09c191fce16 config/BuildSystem/config/packages/amanzi.py ffdaeb046a67a10796906adda3ab50149cef549dbe8eea6bf1bc690df71f1c1b config/BuildSystem/config/packages/libceed.py need to run configure Setting hashfile: arch-macosx-gnu-g/lib/petsc/conf/configure-hash Deleting configure hash file: arch-macosx-gnu-g/lib/petsc/conf/configure-hash Deleted configure hash file: arch-macosx-gnu-g/lib/petsc/conf/configure-hash child PETSc.options.arch 0.085436 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/Users/markadams/Codes/petsc/config/PETSc/options/installDir.py:39) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/Users/markadams/Codes/petsc/arch-macosx-gnu-g" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/Users/markadams/Codes/petsc/config/PETSc/options/installDir.py:85) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/Users/markadams/Codes/petsc/config/PETSc/options/installDir.py:78) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/Users/markadams/Codes/petsc/config/PETSc/options/installDir.py:62) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/Users/markadams/Codes/petsc/config/PETSc/options/installDir.py:98) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.001425 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/Users/markadams/Codes/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/Users/markadams/Codes/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000385 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/Users/markadams/Codes/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000648 ================================================================================ TEST printEnvVariables from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1878) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1878) **** printenv **** GIT_PS1_SHOWDIRTYSTATE=1 KOKKOS_DIR=/Users/markadams/Codes/spack/opt/spack/darwin-catalina-x86_64/apple-clang-11.0.3/kokkos-3.1.01-xpnbowi3ksdtn7dak2zjgarbwjryscbm LC_TERMINAL_VERSION=3.3.9 TERM_PROGRAM_VERSION=3.3.9 CH_TIMER=FALSE CVS_RSH=ssh LOGNAME=markadams USER=markadams HOME=/Users/markadams PATH=/usr/local/opt/llvm/bin:/opt/anaconda2/bin:/opt/anaconda2/bin:/Users/markadams/opt/miniconda2/bin:/opt/miniconda2/bin:/Users/markadams/opt/miniconda3/bin:/usr/local/opt/texinfo/bin:/Users/markadams/homebrew/sbin:/Users/markadams/homebrew/bin:/Users/markadams/homebrew/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/Library/Apple/usr/bin:/usr/local/bin: DBUS_LAUNCHD_SESSION_BUS_SOCKET=/private/tmp/com.apple.launchd.NFPPT8Kppn/unix_domain_listener TERM_PROGRAM=iTerm.app LANG=en_US.UTF-8 LC_TERMINAL=iTerm2 TERM=xterm-256color SHELL=/bin/bash COLORFGBG=0;15 H5PART_DIR=/Users/markadams/Codes/H5Part-1.6.6/build VERSIONER_PYTHON_VERSION=2.7 SHLVL=1 XGC_PLATFORM=osx PETSC_ARCH=arch-macosx-gnu-g XPC_FLAGS=0x0 CH_OUTPUT_INTERVAL=1000 GIT_PS1_SHOWUPSTREAM=auto ITERM_SESSION_ID=w0t0p0:7D9F402F-CBAC-468B-B855-087BDFA0F1D3 PETSC_DIR=/Users/markadams/Codes/petsc _=../arch-macosx-gnu-g.py SVN_EDITOR=vi ARCHFLAGS=-arch x86_64 TERM_SESSION_ID=w0t0p0:7D9F402F-CBAC-468B-B855-087BDFA0F1D3 XPC_SERVICE_NAME=0 NETCDF_DIR=/Users/markadams/SFE/NETCDF_INSTALL SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.HkHsiTdkmh/Listeners DATAFILESPATH=/Users/markadams/matrices XP_LICENSE_INTERFACE=en0 ITERM_PROFILE=Default TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ MACHINE=darwin DISPLAY=/private/tmp/com.apple.launchd.QYSAsVq6IZ/org.macosforge.xquartz:0 OLDPWD=/Users/markadams CH_TIMER_SAMPLE=60000 __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 PWD=/Users/markadams/Codes/petsc PIP_DOWNLOAD_CACHE=/Users/markadams/.pip/cache COLORTERM=truecolor SLEPC_DIR=/Users/markadams/Codes/slepc ================================================================================ TEST resetEnvCompilers from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1885) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1885) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1915) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1915) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1848) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1848) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1869) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1869) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:479) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:479) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPCCFLAGS to Initialized HIPCCFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPCC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:660) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:660) Locate a functional C compiler Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpiicc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicc...not found Unable to find programs ['mpiicc'] providing listing of each search directory to help debug Path provided in Python program ['mpif90', 'hydra_pmi_proxy', 'mpirun', 'mpiexec.hydra', 'mpivars', 'mpif77', 'mpichversion', 'mpicc', 'parkill', 'mpicxx', 'hydra_persist', 'mpiexec', 'mpic++', 'mpifort', 'hydra_nameserver'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc...found Defined make macro "CC" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpicc" All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1 All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc --version stdout: clang version 10.0.1 Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /usr/local/opt/llvm/bin Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ================================================================================ TEST checkCPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:699) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:699) Locate a functional C preprocessor Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc...found Defined make macro "CPP" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkCUDACompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:735) Locate a functional CUDA compiler Checking for program /usr/local/opt/llvm/bin/nvcc...not found Checking for program /opt/anaconda2/bin/nvcc...not found Checking for program /opt/anaconda2/bin/nvcc...not found Checking for program /Users/markadams/opt/miniconda2/bin/nvcc...not found Checking for program /opt/miniconda2/bin/nvcc...not found Checking for program /Users/markadams/opt/miniconda3/bin/nvcc...not found Checking for program /usr/local/opt/texinfo/bin/nvcc...not found Checking for program /Users/markadams/homebrew/sbin/nvcc...not found Checking for program /Users/markadams/homebrew/bin/nvcc...not found Checking for program /Users/markadams/homebrew/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /Library/TeX/texbin/nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /Library/Apple/usr/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program nvcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['llvm-opt-report', 'llvm-lipo', 'modularize', 'llvm-cxxdump', 'clang-change-namespace', 'verify-uselistorder', 'llvm-cvtres', 'llvm-strings', 'clang-move', 'llvm-install-name-tool', 'clangd-xpc-test-client', 'llvm-config', 'clang', 'llvm-lto2', 'llvm-cfi-verify', 'llvm-cov', 'lld', 'llc', 'llvm-link', 'not', 'llvm-symbolizer', 'llvm-objdump', 'clang-refactor', 'clang-rename', 'clangd', 'llvm-mca', 'set-xcode-analyzer', 'llvm-rc', 'clang-include-fixer', 'llvm-addr2line', 'llvm-jitlink', 'llvm-xray', 'clang-format', 'lldb', 'llvm-rtdyld', 'FileCheck', 'clang-check', 'llvm-lto', 'pp-trace', 'llvm-c-test', 'c-index-test', 'llvm-dwp', 'count', 'llvm-reduce', 'llvm-elfabi', 'llvm-mc', 'clang-reorder-fields', 'llvm-exegesis', 'llvm-readelf', 'ld.lld', 'llvm-as', 'clang-query', 'scan-build', 'llvm-nm', 'llvm-lib', 'llvm-undname', 'clang-offload-bundler', 'lldb-argdumper', 'lldb-server', 'llvm-ar', 'find-all-symbols', 'clang-cl', 'llvm-dis', 'llvm-size', 'dsymutil', 'obj2yaml', 'clang-tidy', 'wasm-ld', 'llvm-dlltool', 'llvm-readobj', 'llvm-cxxfilt', 'bugpoint', 'llvm-pdbutil', 'clang-offload-wrapper', 'clang-doc', 'llvm-ifs', 'lli', 'llvm-PerfectShuffle', 'llvm-tblgen', 'lli-child-target', 'clang-scan-deps', 'clang++', 'sancov', 'darwin-debug', 'llvm-dwarfdump', 'opt', 'clang-cpp', 'clang-extdef-mapping', 'yaml-bench', 'llvm-cat', 'git-clang-format', 'llvm-profdata', 'clang-apply-replacements', 'llvm-objcopy', 'llvm-extract', 'yaml2obj', 'sanstats', 'llvm-split', 'llvm-bcanalyzer', 'clang-10', 'lldb-instr', 'hmaptool', 'llvm-stress', 'llvm-diff', 'scan-view', 'diagtool', 'llvm-modextract', 'clang-import-test', 'lld-link', 'llvm-strip', 'llvm-mt', 'ld64.lld', 'lldb-vscode', 'llvm-ranlib', 'llvm-cxxmap'] Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /Users/markadams/opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda2/bin' Warning accessing /opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/miniconda2/bin' Warning accessing /Users/markadams/opt/miniconda3/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda3/bin' ['texi2pdf', 'pod2texi', 'texindex', 'info', 'texi2dvi', 'pdftexi2dvi', 'texi2any', 'makeinfo', 'install-info'] Warning accessing /Users/markadams/homebrew/sbin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/sbin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' ['ndmetis', 'ppmtouil', 'pstoedit', 'lto-dump-10', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'msgconv', 'pbmtonokia', 'leaftoppm', 'g-ir-compiler', 'event_rpcgen.py', 'pnminvert', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'msggrep', 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'echo', 'launchctl', 'df', 'pwd', 'test', 'csh', 'wait4path', 'unlink', 'sleep', 'stty', 'date', 'ed', 'expr', 'pax', 'bash', 'kill', 'sh', 'ps', 'link', 'tcsh', 'dd', 'mkdir', 'ksh', 'hostname', 'dash', 'rmdir', 'mv', 'ln', 'ls', 'cp', 'sync', 'zsh', 'chmod', 'rm', '['] ['dsconfigad', 'htdbm', 'netbiosd', 'postlock', 'systemsoundserverd', 'dseditgroup', 'avbdeviced', 'rpcinfo', 'BootCacheControl', 'weakpass_edit', 'periodic', 'accton', 'wfsctl', 'postalias', 'slapacl', 'edquota', 'sndiskmove', 'pdisk', 'amt', 'lpadmin', 'fdisk', 'sysadminctl', 'networksetup', 'envvars', 'ktutil', 'setquota', 'otctl', 'sncfgvalidate', 'php-fpm', 'AppleFileServer', 'dnctl', 'mDNSResponder', 'repquota', 'cupsfilter', 'checkgid', 'uuconv', 'sharing', 'vifs', 'ac', 'racoon', 'dsenableroot', 'xsanctl', 'kdcsetup', 'aslmanager', 'screencapture', 'htdigest', 'rtsold', 'chat', 'DevToolsSecurity', 'logresolve', 'cvdbset', 'KernelEventAgent', 'gpt', 'scutil', 'ioreg', 'ab', 'traceroute6', 'pwd_mkdb', 'sysctl', 'appsleepd', 'sshd', 'mDNSResponderHelper', 'authserver', 'sncfginstall', 'postmulti', 'lsof', 'pkgutil', 'slapindex', 'sc_auth', 'ioclasscount', 'uucico', 'firmwarepasswd', 'rarpd', 'tsig-keygen', 'kadmin.local', 'syslogd', 'taskpolicy', 'filecoordinationd', 'dot_clean', 'PasswordService', 'systemsetup', 'zdump', 'snmpd', 'ndp', 'coreaudiod', 'rpcbind', 'praudit', 'usernoted', 'postkick', 'postcat', 'netstat', 'lpc', 'slapadd', 'krbservicesetup', 'sncfgtemplate', 'slapconfig', 'rtadvd', 'httxt2dbm', 'distnoted', 'mtree', 'cupsdisable', 'lpmove', 'disktool', 'purge', 'rpc.statd', 'cupsctl', 'DirectoryService', 'notifyd', 'klist_cdhashes', 'dtrace', 'kextcache', 'cupsd', 'dbmmanage', 'languagesetup', 'skywalkctl', 'mkpassdb', 'postconf', 'createhomedir', 'ocspd', 'iostat', 'cvdb', 'sa', 'rpc.lockd', 'uuxqt', 'mkfile', 'softwareupdate', 'unsetpassword', 'zic', 'nfs4mapid', 'postsuper', 'htpasswd', 'rotatelogs', 'universalaccessd', 'audit', 'httpd', 'bluetoothaudiod', 'slapauth', 'slappasswd', 'localemanager', 'asr', 'cvupdatefs', 'bless', 'cvgather', 'xscertadmin', 'visudo', 'uusched', 'dsconfigldap', 'smbdiagnose', 'cfprefsd', 'auditd', 'uuchk', 'cvfsck', 'kextfind', 'diskutil', 'cvfsid', 'sso_util', 'vsdbutil', 'ddns-confgen', 'ioalloccount', 'uasysdiagnose', 'dev_mkdb', 'hdik', 'slapdn', 'vpnd', 'postqueue', 'setkey', 'tpctl', 'repairHomePermissions', 'spindump', 'cupsreject', 'traceroute', 'quotaoff', 'newsyslog', 'postfix', 'cvfsdb', 'snmptrapd', 'chroot', 'arp', 'cupsaccept', 'nvram', 'chown', 'mkextunpack', 'sncfgremove', 'sncfgquery', 'postlog', 'installer', 'pppd', 'httpd-wrapper', 'system_profiler', 'fcgistarter', 'bluetoothd', 'slapschema', 'kadmin', 'spray', 'cvversions', 'kextlibs', 'tcpdump', 'xartutil', 'securityd', 'nlcontrol', 'quotaon', 'spctl', 'vipw', 'gssd', 'slaptest', 'automount', 'scselect', 'envvars-std', 'graphicssession', 'ckksctl', 'lpinfo', 'smbd', 'serverinfo', 'cvmkfs', 'postmap', 'postdrop', 'cupsenable', 'cron', 'systemstats', 'bnepd', 'kextstat', 'cvlabel', 'sendmail', 'systemkeychain', 'kcditto', 'slapcat', 'ipconfig', 'auditreduce', 'cvadmin', 'WirelessRadioManagerd', 'apachectl', 'htcacheclean'] ['mount_hfs', 'mount_apfs', 'md5', 'fsck', 'mount_udf', 'quotacheck', 'mount_cd9660', 'ping', 'fsck_exfat', 'mount_exfat', 'fsck_udf', 'shutdown', 'route', 'mount_webdav', 'fsck_hfs', 'nfsd', 'reboot', 'nfsiod', 'fsck_cs', 'fsck_apfs', 'fstyp_msdos', 'disklabel', 'mount_msdos', 'fsck_msdos', 'ifconfig', 'halt', 'mount_9p', 'mount_ntfs', 'rtsol', 'newfs_apfs', 'umount', 'fstyp', 'kextunload', 'mpioutil', 'fstyp_ntfs', 'emond', 'mount_nfs', 'newfs_udf', 'mount_ftp', 'pfctl', 'mknod', 'fstyp_udf', 'dmesg', 'mount', 'fibreconfig', 'fstyp_hfs', 'newfs_hfs', 'dynamic_pager', 'launchd', 'newfs_exfat', 'apfs_hfs_convert', 'nologin', 'mount_afp', 'mount_smbfs', 'ping6', 'kextload', 'mount_cddafs', 'mount_fdesc', 'newfs_msdos', 'mount_acfs', 'mount_devfs'] ['luajittex', 'lollipop', 't1disasm', 'chktex', 'rubikrotation', 'lily-rebuild-pdfs', 'weave', 'mag', 'man', 'ebb', 'prepmx', 'mktexlsr', 'gsftopk', 'upmendex', 'dvibook', 'kpsewhere', 'rumakeindex', 'fontinst', 'cef5conv', 'lacheck', 'httexi', 'lily-image-commands', 'texloganalyser', 'dvilj', 'patgen', 'uptex', 'exceltex', 'pdvitype', 'texconfig-sys', 'xmltex', 'vlna', 'texsis', 'dvipdft', 'urlbst', 'pdfcslatex', 'afm2afm', 'cefconv', 'uplatex-dev', 'sjisconv', 'tex2xindy', 'musixtex', 'pdfcsplain', 'opl2ofm', 'de-macro', 'bbl2bib', 'ltx2crossrefxml', 'pdftex', 'r-mpost', 'dvitodvi', 'gftodvi', 'dviconcat', 'texluajitc', 'dvipng', 'pdflatex-dev', 'komkindex', 'tex', 'sty2dtx', 'ppltotf', 'yplan', 'eplain', 'eptex', 'lily-glyph-commands', 'htmex', 'texlua', 'htxelatex', 'xasy', 'fmtutil-user', 'wovp2ovf', 'dvilualatex', 'cefsconv', 'context', 'platex', 'allec', 'adhocfilelist', 'kpsetool', 'makejvf', 'texdoctk', 'xelatex-dev', 'vptovf', 'tex4ht', 'texluajit', 'mtxrunjit', 'uplatex', 'musixflx', 'pfarrei', 'mf', 'latexdiff-vc', 'ttfdump', 'etex', 'fig4latex', 'bibexport', 'ttf2tfm', 'latexmk', 'pmpost', 'ctwill', 'pst2pdf', 'wordcount', 'texconfig-dialog', 'luahbtex', 'lwarpmk', 'dvilj2p', 'dviinfox', 'ttf2kotexfont', 'ctanbib', 'cweave', 'bg5+latex', 'pdfatfi', 'ptex2pdf', 'e2pall', 'kpsewhich', 'upbibtex', 'texdiff', 'mathspic', 'kanji-fontmap-creator', 'kanji-config-updmap', 'asy', 'typeoutfileinfo', 'chklref', 'upmpost', 'pdflatex', 'perltex', 'mkt1font', 'cefslatex', 'cjk-gs-integrate', 'chkdvifont', 'dvitype', 'pdfjadetex', 't1lint', 'jamo-normalize', 'fmtutil-sys', 'wofm2opl', 'dviasm', 'kpsestat', 'pdfxup', 'makedtx', 'pltotf', 'mkindex', 'dvilj6', 'r-pmpost', 'xindy.mem', 'xetex', 'latex', 'ps4pdf', 'multibibliography', 'teckit_compile', 'ttf2afm', 'biburl2doi', 'getmapdl', 'uptftopl', 'contextjit', 'bib2gls', 'texplate', 'match_parens', 'mkjobtexmf', 'updvitomp', 'ps2eps', 'pkfix-helper', 'chkweb', 'arlatex', 'pn2pdf', 'pdfclose', 'xindex', 'clxelatex', 'dosepsbin', 'jadetex', 'a2ping', 'bibzbladd', 'ovf2ovp', 'mfluajit-nowin', 'mpost', 'texosquery-jre5', 'texhash', 'convbkmk', 'thumbpdf', 'pkfix', 'dvihp', 'hbf2gf', 'xindy.run', 'texcount', 'texmfstart', 'latexrevise', 'cefpdflatex', 'texluac', 'dvicopy', 'ctie', 'pdftex-quiet', 'euptex', 'pdftosrc', 'mf-nowin', 'ctangle', 'omfonts', 't1asm', 'mflua-nowin', 'cluttex', 'svn-multi', 'mk4ht', 'afm2tfm', 'pdfopen', 'fragmaster', 'ebong', 'ctanify', 'pygmentex', 'texdef', 'luatex', 'cslatex', 'synctex', 'texdirflatten', 'gbkpdflatex', 'xdvipdfmx', 'sjispdflatex', 'makeindex', 'dviluatex', 'mkofm', 'dvipdfmx', 'psbook', 'dvispc', 'csplain', 'ttftotype42', 'mft', 't1rawafm', 'fmtutil', 'ctwill-twinx', 'simpdftex', 'depythontex', 'otfinfo', 'latexindent', 'kanji-config-updmap-sys', 'extconv', 'disdvi', 'pdvitomp', 'dvipdfm', 'texliveonfly', 'allneeded', 'htcontext', 't1testpage', 'biber', 'dv2dt', 'xindy', 'pdfbook2', 't1unmac', 'xelatex', 'webquiz', 'kpsepath', 'diadia', 'makeglossaries', 'cef5pdflatex', 'autoinst', 'dvilualatex-dev', 'mkpic', 'splitindex', 'repstopdf', 'otangle', 'mfplain', 'latexfileversion', 'latex-git-log', 'inimf', 'lualatex-dev', 'latex2man', 'ps2pk', 'htxetex', 'l3build', 'ptftopl', 'ptex', 'gbklatex', 't1binary', 'bibtex', 't1dotlessj', 'mktexpk', 'detex', 'htlatex', 'odvicopy', 'dvidvi', 'extractres', 'extractbb', 'tie', 'latexdef', 'tlmgr', 'arara', 'ctan-o-mat', 'rubibtex', 'dvigif', 'gftype', 'ketcindy', 'kpseaccess', 'luacsplain', 'cachepic', 'srcredact', 'dtxgen', 'mmafm', 'pktype', 'platex-dev', 'kpsexpand', 'pktogf', 'msxlint', 't1reencode', 'vftovp', 'xhlatex', 'ht', 'mendex', 'make4ht', 'ceflatex', 'texlinks', 'pmxchords', 'mptopdf', 'afm2pl', 'mktexmf', 'lamed', 'gftopk', 'ulqda', 'dvilj4l', 'pooltype', 'bg5latex', 'bibmradd', 'aleph', 'wovf2ovp', 'pdfetex', 'dvi2tty', 'ofm2opl', 'pslatex', 'initex', 'latexpand', 'pamphletangler', 'mkgrkindex', 'mtxrun', 'epsffit', 'listings-ext.sh', 'mktexfmt', 'scor2prt', 'psnup', 'ot2kpx', 'allcm', 'pk2bm', 'dvitomp', 'texindy', 'vpl2vpl', 'luatools', 'cef5latex', 'ctwill-refsort', 'luajithbtex', 'bg5+pdflatex', 'dvisvgm', 'tex2aspc', 'bg5conv', 'deweb', 'tlcockpit', 'cfftot1', 'dviselect', 'odvitype', 'vpl2ovp', 'otp2ocp', 'latexdiff', 'dt2dv', 'bg5pdflatex', 'mf2pt1', 'psresize', 't1mac', 'epspdf', 'pythontex', 'bibtexu', 'authorindex', 'texosquery', 'tlshell', 'pdfxmltex', 'includeres', 't1ascii', 'pdflatexpicscale', 'mfluajit', 'axohelp', 'tangle', 'httex', 'texosquery-jre8', 'checkcites', 'bibtex8', 'dvi2fax', 'otftotfm', 'cefspdflatex', 'mmpfb', 'pfb2pfa', 'vpe', 'psselect', 'latex-dev', 'findhyph', 'gregorio', 'ovp2ovf', 'utf8mex', 'mflua', 'purifyeps', 'autosp', 'bundledoc', 'mllatex', 'tex4ebook', 'xdvi-xaw', 'sjislatex', 'rungs', 'dvilj4', 'ltxfileinfo', 'texconfig', 'updvitype', 'ltximg', 'updmap-user', 'dvips', 'convertgls2bib', 'latex2nemeth', 'pdfjam', 'epstopdf', 'outocp', 'pedigree', 'mkocp', 'kpsereadlink', 'ttf2pk', 'tpic2pdftex', 'kanji-config-updmap-user', 'psjoin', 'm-tx', 'uppltotf', 'texdoc', 'bbox', 'dvired', 'latex-papersize', 'makeglossaries-lite', 't4ht', 'xdvi', 'ps2frag', 'wopl2ofm', 'devnag', 'ctanupload', 'texexec', 'listbib', 'cllualatex', 'lualatex', 'pmxab', 'jfmutil', 'pdfmex', 'tftopl', 'mltex', 'amstex', 'pbibtex', 'pstops', 'optex', 'mex', 'bibdoiadd', 'updmap', 'dvipos', 'luaotfload-tool', 'epspdftk', 'updmap-sys', 'r-upmpost', 'mktextfm', 'texfot', 'checklistings', 'rpdfcrop', 'a5toa4', 'installfont-tl', 'pdfcrop', 'pdfannotextractor'] ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] ['rvictl'] ['ndmetis', 'ppmtouil', 'pstoedit', 'lto-dump-10', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'msgconv', 'pbmtonokia', 'leaftoppm', 'g-ir-compiler', 'event_rpcgen.py', 'pnminvert', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'msggrep', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'autopoint', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'g-ir-annotation-tool', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'x86_64-apple-darwin19-gcc-ranlib-10', 'pbmtog3', 'gcc-ranlib-10', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'msgcomm', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gfortran', 'opj_dump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'png-fix-itxt', 'gcov-dump-10', 'pamslice', 'rst2latex.py', 'gfortran-10', 'c++-10', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'apm', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'atom', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'easy_install-3.8', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'VBoxManage', 'pngfix', 'zeisstopnm', 'vagrant', 'xmlto', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'gcov-tool-10', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'pktopbm', 'pgmtolispm', 'x86_64-apple-darwin19-c++-10', 'fiascotopnm', 'pamdepth', 'update-mime-database', 'VBoxHeadless', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'g-ir-generate', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'pnmsmooth', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'ppmtopi1', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'cpp-10', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'x86_64-apple-darwin19-gcc-ar-10', 'mpivars', 'msgen', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'python3.8', 'pnmtosir', 'pambackground', 'g-ir-inspect', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'msgmerge', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'envsubst', 'xz', 'ppmdither', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'VirtualBox', 'x86_64-apple-darwin19-gcc-nm-10', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'msginit', 'mongoose', 'rbox', 'lua', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'gcc-10', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'tiffset', 'tclsh', 'pip', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'gettext', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'gettext.sh', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'msgcmp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'g-ir-scanner', 'VBoxAutostart', 'dbtoepub', 'gcc-nm-10', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'ppmquant', 'g++-10', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'gcc-ar-10', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'h5diff', 'ppmtopgm', 'msgcat', 'pbmtopk', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'h5clear', 'psicc', 'pcretest', 'recode-sr-latin', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'jpgicc', 'pydoc3.8', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'fc-cache', 'ppmtopj', 'pampop9', 'sip', 'tclselect', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'msgexec', 'rst2xml.py', 'pelican-themes', 'pyuic5', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'ngettext', 'git-clang-format', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'gcov-10', 'dwebp', 'x86_64-apple-darwin19-gcc-10.2.0', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'x86_64-apple-darwin19-g++-10', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'idle3.8', 'h5repart', 'lzgrep', 'msgunfmt', 'pnmtoplainpnm', 'pamdeinterlace', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'msgfilter', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'python3.8-config', 'fc-conflist', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'x86_64-apple-darwin19-gfortran-10', 'pylupdate5', '2to3-3.8', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'msgfmt', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'msgattrib', 'imgcmp', 'pcregrep', 'tiff2rgba', 'x86_64-apple-darwin19-gcc-10', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'xgettext', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'xmlif', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'gettextize', 'pelican-import', 'VBoxVRDP', 'msguniq', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] Warning accessing gives errors: [Errno 2] No such file or directory: '' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:775) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:775) Locate a functional CUDA preprocessor ================================================================================ TEST checkHIPCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:809) TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:809) Locate a functional HIP compiler Checking for program /usr/local/opt/llvm/bin/hipcc...not found Checking for program /opt/anaconda2/bin/hipcc...not found Checking for program /opt/anaconda2/bin/hipcc...not found Checking for program /Users/markadams/opt/miniconda2/bin/hipcc...not found Checking for program /opt/miniconda2/bin/hipcc...not found Checking for program /Users/markadams/opt/miniconda3/bin/hipcc...not found Checking for program /usr/local/opt/texinfo/bin/hipcc...not found Checking for program /Users/markadams/homebrew/sbin/hipcc...not found Checking for program /Users/markadams/homebrew/bin/hipcc...not found Checking for program /Users/markadams/homebrew/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /sbin/hipcc...not found Checking for program /Library/TeX/texbin/hipcc...not found Checking for program /opt/X11/bin/hipcc...not found Checking for program /Library/Apple/usr/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program hipcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/hipcc...not found Unable to find programs ['hipcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['llvm-opt-report', 'llvm-lipo', 'modularize', 'llvm-cxxdump', 'clang-change-namespace', 'verify-uselistorder', 'llvm-cvtres', 'llvm-strings', 'clang-move', 'llvm-install-name-tool', 'clangd-xpc-test-client', 'llvm-config', 'clang', 'llvm-lto2', 'llvm-cfi-verify', 'llvm-cov', 'lld', 'llc', 'llvm-link', 'not', 'llvm-symbolizer', 'llvm-objdump', 'clang-refactor', 'clang-rename', 'clangd', 'llvm-mca', 'set-xcode-analyzer', 'llvm-rc', 'clang-include-fixer', 'llvm-addr2line', 'llvm-jitlink', 'llvm-xray', 'clang-format', 'lldb', 'llvm-rtdyld', 'FileCheck', 'clang-check', 'llvm-lto', 'pp-trace', 'llvm-c-test', 'c-index-test', 'llvm-dwp', 'count', 'llvm-reduce', 'llvm-elfabi', 'llvm-mc', 'clang-reorder-fields', 'llvm-exegesis', 'llvm-readelf', 'ld.lld', 'llvm-as', 'clang-query', 'scan-build', 'llvm-nm', 'llvm-lib', 'llvm-undname', 'clang-offload-bundler', 'lldb-argdumper', 'lldb-server', 'llvm-ar', 'find-all-symbols', 'clang-cl', 'llvm-dis', 'llvm-size', 'dsymutil', 'obj2yaml', 'clang-tidy', 'wasm-ld', 'llvm-dlltool', 'llvm-readobj', 'llvm-cxxfilt', 'bugpoint', 'llvm-pdbutil', 'clang-offload-wrapper', 'clang-doc', 'llvm-ifs', 'lli', 'llvm-PerfectShuffle', 'llvm-tblgen', 'lli-child-target', 'clang-scan-deps', 'clang++', 'sancov', 'darwin-debug', 'llvm-dwarfdump', 'opt', 'clang-cpp', 'clang-extdef-mapping', 'yaml-bench', 'llvm-cat', 'git-clang-format', 'llvm-profdata', 'clang-apply-replacements', 'llvm-objcopy', 'llvm-extract', 'yaml2obj', 'sanstats', 'llvm-split', 'llvm-bcanalyzer', 'clang-10', 'lldb-instr', 'hmaptool', 'llvm-stress', 'llvm-diff', 'scan-view', 'diagtool', 'llvm-modextract', 'clang-import-test', 'lld-link', 'llvm-strip', 'llvm-mt', 'ld64.lld', 'lldb-vscode', 'llvm-ranlib', 'llvm-cxxmap'] Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /Users/markadams/opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda2/bin' Warning accessing /opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/miniconda2/bin' Warning accessing /Users/markadams/opt/miniconda3/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda3/bin' ['texi2pdf', 'pod2texi', 'texindex', 'info', 'texi2dvi', 'pdftexi2dvi', 'texi2any', 'makeinfo', 'install-info'] Warning accessing /Users/markadams/homebrew/sbin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/sbin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' ['ndmetis', 'ppmtouil', 'pstoedit', 'lto-dump-10', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'msgconv', 'pbmtonokia', 'leaftoppm', 'g-ir-compiler', 'event_rpcgen.py', 'pnminvert', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'msggrep', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'autopoint', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'g-ir-annotation-tool', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'x86_64-apple-darwin19-gcc-ranlib-10', 'pbmtog3', 'gcc-ranlib-10', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'msgcomm', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gfortran', 'opj_dump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'png-fix-itxt', 'gcov-dump-10', 'pamslice', 'rst2latex.py', 'gfortran-10', 'c++-10', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'apm', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'atom', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'easy_install-3.8', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'VBoxManage', 'pngfix', 'zeisstopnm', 'vagrant', 'xmlto', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'gcov-tool-10', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'pktopbm', 'pgmtolispm', 'x86_64-apple-darwin19-c++-10', 'fiascotopnm', 'pamdepth', 'update-mime-database', 'VBoxHeadless', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'g-ir-generate', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'pnmsmooth', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'ppmtopi1', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'cpp-10', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'x86_64-apple-darwin19-gcc-ar-10', 'mpivars', 'msgen', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'python3.8', 'pnmtosir', 'pambackground', 'g-ir-inspect', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'msgmerge', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'envsubst', 'xz', 'ppmdither', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'VirtualBox', 'x86_64-apple-darwin19-gcc-nm-10', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'msginit', 'mongoose', 'rbox', 'lua', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'gcc-10', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'tiffset', 'tclsh', 'pip', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'gettext', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'gettext.sh', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'msgcmp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'g-ir-scanner', 'VBoxAutostart', 'dbtoepub', 'gcc-nm-10', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'ppmquant', 'g++-10', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'gcc-ar-10', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'h5diff', 'ppmtopgm', 'msgcat', 'pbmtopk', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'h5clear', 'psicc', 'pcretest', 'recode-sr-latin', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'jpgicc', 'pydoc3.8', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'fc-cache', 'ppmtopj', 'pampop9', 'sip', 'tclselect', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'msgexec', 'rst2xml.py', 'pelican-themes', 'pyuic5', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'ngettext', 'git-clang-format', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'gcov-10', 'dwebp', 'x86_64-apple-darwin19-gcc-10.2.0', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'x86_64-apple-darwin19-g++-10', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'idle3.8', 'h5repart', 'lzgrep', 'msgunfmt', 'pnmtoplainpnm', 'pamdeinterlace', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'msgfilter', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'python3.8-config', 'fc-conflist', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'x86_64-apple-darwin19-gfortran-10', 'pylupdate5', '2to3-3.8', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'msgfmt', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'msgattrib', 'imgcmp', 'pcregrep', 'tiff2rgba', 'x86_64-apple-darwin19-gcc-10', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'xgettext', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'xmlif', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'gettextize', 'pelican-import', 'VBoxVRDP', 'msguniq', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] ['ndmetis', 'ppmtouil', 'pstoedit', 'lto-dump-10', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'msgconv', 'pbmtonokia', 'leaftoppm', 'g-ir-compiler', 'event_rpcgen.py', 'pnminvert', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'msggrep', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'autopoint', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'g-ir-annotation-tool', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'x86_64-apple-darwin19-gcc-ranlib-10', 'pbmtog3', 'gcc-ranlib-10', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'msgcomm', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gfortran', 'opj_dump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'png-fix-itxt', 'gcov-dump-10', 'pamslice', 'rst2latex.py', 'gfortran-10', 'c++-10', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'apm', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'atom', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'easy_install-3.8', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'VBoxManage', 'pngfix', 'zeisstopnm', 'vagrant', 'xmlto', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'gcov-tool-10', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'pktopbm', 'pgmtolispm', 'x86_64-apple-darwin19-c++-10', 'fiascotopnm', 'pamdepth', 'update-mime-database', 'VBoxHeadless', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'g-ir-generate', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'pnmsmooth', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'ppmtopi1', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'cpp-10', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'x86_64-apple-darwin19-gcc-ar-10', 'mpivars', 'msgen', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'python3.8', 'pnmtosir', 'pambackground', 'g-ir-inspect', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'msgmerge', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'envsubst', 'xz', 'ppmdither', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'VirtualBox', 'x86_64-apple-darwin19-gcc-nm-10', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'msginit', 'mongoose', 'rbox', 'lua', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'gcc-10', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'tiffset', 'tclsh', 'pip', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'gettext', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'gettext.sh', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'msgcmp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'g-ir-scanner', 'VBoxAutostart', 'dbtoepub', 'gcc-nm-10', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'ppmquant', 'g++-10', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'gcc-ar-10', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'h5diff', 'ppmtopgm', 'msgcat', 'pbmtopk', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'h5clear', 'psicc', 'pcretest', 'recode-sr-latin', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'jpgicc', 'pydoc3.8', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'fc-cache', 'ppmtopj', 'pampop9', 'sip', 'tclselect', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'msgexec', 'rst2xml.py', 'pelican-themes', 'pyuic5', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'ngettext', 'git-clang-format', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'gcov-10', 'dwebp', 'x86_64-apple-darwin19-gcc-10.2.0', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'x86_64-apple-darwin19-g++-10', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'idle3.8', 'h5repart', 'lzgrep', 'msgunfmt', 'pnmtoplainpnm', 'pamdeinterlace', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'msgfilter', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'python3.8-config', 'fc-conflist', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'x86_64-apple-darwin19-gfortran-10', 'pylupdate5', '2to3-3.8', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'msgfmt', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'msgattrib', 'imgcmp', 'pcregrep', 'tiff2rgba', 'x86_64-apple-darwin19-gcc-10', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'xgettext', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'xmlif', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'gettextize', 'pelican-import', 'VBoxVRDP', 'msguniq', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] ['uux', 'cpan', 'BuildStrings', 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'grodvi', 'mdls', 'codesign_allocate', 'lookbib', 'mddiagnose', 'snmpbulkwalk', 'keytool', 'fileproviderctl', 'binhex.pl', 'dtruss', 'dserr', 'tiff2icns', 'moose-outdated5.28', 'pbpaste', 'policytool', 'pod2text5.28', 'actool', 'heap', 'sum', 'lskq', 'dbilogstrip5.28', 'macbinary', 'debinhex5.28.pl', 'ncdestroy', 'nc', 'snmptrap', 'tsort', 'uuencode', 'cpp', 'swift', 'batch', 'sqlite3', 'make', 'dig', 'ptardiff5.18', 'macerror', 'infocmp', 'apt', 'trimforce', 'nm', 'flex++', 'osadecompile', 'IOAccelMemory', 'ssh-add', 'machine', 'wish8.5', 'screen', 'snmpget', 'pcsctest', 'codesign', 'format-sql5.28', 'atos', 'llvm-gcc', 'mailq', 'arch', 'ssh-keygen', 'snmptable', 'kill.d', 'pod2readme5.28', 'ditto', 'getopts', 'users', 'snmpbulkget', 'sdp', 'shasum5.28', 'showmount', 'taskinfo', 'ar', 'perldoc5.18', 'who', 'mktemp', 'unifdef', 'yaa', 'cut', 'imptrace', 'pack200', 'net-server5.28', 'ippeveprinter', 'hdid', 'dc', 'biff', 'perl5.28', 'mailx', 'odutil', 'jsadebugd', 'xargs', 'texi2dvi', 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'id', 'procsystime', 'cd', 'quota', 'uuto', 'fuser', 'dsimport', 'csgather', 'json_pp5.28', 'git-shell', 'ldapsearch', 'command', 'snmp-bridge-mib', 'egrep', 'notifyutil', 'cc', 'dsmemberutil', 'podselect', 'pod2html5.28', 'grn', 'psed', 'whereis', 'tccutil', 'a2p', 'find', 'jstat', 'zcat', 'ip2cc5.18', 'unifdefall', 'nroff', 'pridist.d', 'size', 'timesyncanalyse', 'libnetcfg5.28', 'uustat', 'snmpwalk', 'llvm-g++', 'scp', 'instmodsh5.18', 'tnameserv', 'true', 'afinfo', 'hidutil', 'ldapadd', 'pwpolicy', 'profiles', 'yacc', 'kswitch', 'xcodebuild', 'jobs', 'c89', 'sudo', 'bioutil', 'splain5.28', 'tmdiagnose', 'plockstat', 'xgettext5.18.pl', 'serialver', 'afida', 'pgrep', 'yes', 'lessecho', 'sdiff', 'afscexpand', 'treereg5.18', 'cpan5.18', 'db_deadlock', 'ldapcompare', 'unexpand', 'git-upload-pack', 'ssh-copy-id', 'grolj4', 'fixproc', 'debinhex.pl', 'lorder', 'pod2html5.18', 'ranlib', 'javadoc', 'tput', 'fgrep', 'json_pp5.18', 'sigdist.d', 'ppdhtml', 'libnetcfg5.18', 'auval', 'erb', 'dappprof', 'openssl', 'instmodsh5.28', 'drutil', 'jinfo', 'ip2cc5.28', 'splain', 'pmset', 'xmlcatalog', 'zcmp', 'ptargrep5.28', 'lwp-mirror5.28', 'rwsnoop', 'jstatd', 'htmltree5.28', 'lpr', 'layerutil', 'snmptest', 'mib2c-update', 'grog', 'creatbyproc.d', 'pstruct', 'fdesetup', 'flex', 'hostinfo', 'jcontrol', 'MergePef', 'lpstat', 'SetFile', 'pl2pm5.28', 'pod2html', 'rebase', 'tar', 'rdoc', 'uptime', 's2p', 'pidpersec.d', 'xpath5.18', 'schemagen', 'moo-outdated5.28', 'pod2usage5.28', 'dbiprof5.28', 'cvcp', 'package-stash-conflicts5.28', 'false', 'zegrep', 'memory_pressure', 'uncompress', 'lwp-request', 'ncurses5.4-config', 'findrule5.28', 'sampleproc', 'db_recover', 'ptar5.28', 'h2xs5.28', 'nmedit', 'filebyproc.d', 'bison', 'tclsh8.5', 'jdeps', 'productbuild', 'zipinfo', 'diffstat', 'login', 'db_dump', 'smtpd.py', 'cpuctl', 'cpu_profiler.d', 'which', 'bundler', 'iopattern', 'finger', 'mig', 'sntp', 'klist', 'open', 'GetFileInfo', 'localedef', 'ruby', 'stringdups', 'htmltree', 'ptargrep5.18', 'git', 'tr', 'lwp-mirror5.18', 'htmltree5.18', 'banner', 'leave', 'jconsole', 'paste', 'RezWack', 'moo-outdated5.18', 'bzip2', 'pod2usage5.18', 'uucp', 'passwd', 'dbiprof5.18', 'package-stash-conflicts5.18', 'uuidgen', 'pl2pm5.18', 'install_name_tool', 'cmpdylib', 'makeinfo', 'php-config', 'zfgrep', 'xpath5.28', 'snfsdefrag', 'zipdetails', 'look', 'findrule5.18', 'col', 'dscacheutil', 'ptar5.18', 'zforce', 'lwp-mirror', 'malloc_history', 'cpio', 'nohup', 'kcc', 'ulimit', 'rails', 'bspatch', 'RezDet', 'hotspot.d', 'cvaffinity', 'gatherheaderdoc', 'ppdi', 'pcap-config', 'avmetareadwrite', 'update_dyld_shared_cache_root_mode', 'gen_bridge_metadata', 'gem', 'opendiff', 'h2xs5.18', 'talk', 'expect', 'jimage', 'lockstat', 'dapptrace', 'install-info', 'xattr', 'w', 'gunzip'] ['cat', 'echo', 'launchctl', 'df', 'pwd', 'test', 'csh', 'wait4path', 'unlink', 'sleep', 'stty', 'date', 'ed', 'expr', 'pax', 'bash', 'kill', 'sh', 'ps', 'link', 'tcsh', 'dd', 'mkdir', 'ksh', 'hostname', 'dash', 'rmdir', 'mv', 'ln', 'ls', 'cp', 'sync', 'zsh', 'chmod', 'rm', '['] ['dsconfigad', 'htdbm', 'netbiosd', 'postlock', 'systemsoundserverd', 'dseditgroup', 'avbdeviced', 'rpcinfo', 'BootCacheControl', 'weakpass_edit', 'periodic', 'accton', 'wfsctl', 'postalias', 'slapacl', 'edquota', 'sndiskmove', 'pdisk', 'amt', 'lpadmin', 'fdisk', 'sysadminctl', 'networksetup', 'envvars', 'ktutil', 'setquota', 'otctl', 'sncfgvalidate', 'php-fpm', 'AppleFileServer', 'dnctl', 'mDNSResponder', 'repquota', 'cupsfilter', 'checkgid', 'uuconv', 'sharing', 'vifs', 'ac', 'racoon', 'dsenableroot', 'xsanctl', 'kdcsetup', 'aslmanager', 'screencapture', 'htdigest', 'rtsold', 'chat', 'DevToolsSecurity', 'logresolve', 'cvdbset', 'KernelEventAgent', 'gpt', 'scutil', 'ioreg', 'ab', 'traceroute6', 'pwd_mkdb', 'sysctl', 'appsleepd', 'sshd', 'mDNSResponderHelper', 'authserver', 'sncfginstall', 'postmulti', 'lsof', 'pkgutil', 'slapindex', 'sc_auth', 'ioclasscount', 'uucico', 'firmwarepasswd', 'rarpd', 'tsig-keygen', 'kadmin.local', 'syslogd', 'taskpolicy', 'filecoordinationd', 'dot_clean', 'PasswordService', 'systemsetup', 'zdump', 'snmpd', 'ndp', 'coreaudiod', 'rpcbind', 'praudit', 'usernoted', 'postkick', 'postcat', 'netstat', 'lpc', 'slapadd', 'krbservicesetup', 'sncfgtemplate', 'slapconfig', 'rtadvd', 'httxt2dbm', 'distnoted', 'mtree', 'cupsdisable', 'lpmove', 'disktool', 'purge', 'rpc.statd', 'cupsctl', 'DirectoryService', 'notifyd', 'klist_cdhashes', 'dtrace', 'kextcache', 'cupsd', 'dbmmanage', 'languagesetup', 'skywalkctl', 'mkpassdb', 'postconf', 'createhomedir', 'ocspd', 'iostat', 'cvdb', 'sa', 'rpc.lockd', 'uuxqt', 'mkfile', 'softwareupdate', 'unsetpassword', 'zic', 'nfs4mapid', 'postsuper', 'htpasswd', 'rotatelogs', 'universalaccessd', 'audit', 'httpd', 'bluetoothaudiod', 'slapauth', 'slappasswd', 'localemanager', 'asr', 'cvupdatefs', 'bless', 'cvgather', 'xscertadmin', 'visudo', 'uusched', 'dsconfigldap', 'smbdiagnose', 'cfprefsd', 'auditd', 'uuchk', 'cvfsck', 'kextfind', 'diskutil', 'cvfsid', 'sso_util', 'vsdbutil', 'ddns-confgen', 'ioalloccount', 'uasysdiagnose', 'dev_mkdb', 'hdik', 'slapdn', 'vpnd', 'postqueue', 'setkey', 'tpctl', 'repairHomePermissions', 'spindump', 'cupsreject', 'traceroute', 'quotaoff', 'newsyslog', 'postfix', 'cvfsdb', 'snmptrapd', 'chroot', 'arp', 'cupsaccept', 'nvram', 'chown', 'mkextunpack', 'sncfgremove', 'sncfgquery', 'postlog', 'installer', 'pppd', 'httpd-wrapper', 'system_profiler', 'fcgistarter', 'bluetoothd', 'slapschema', 'kadmin', 'spray', 'cvversions', 'kextlibs', 'tcpdump', 'xartutil', 'securityd', 'nlcontrol', 'quotaon', 'spctl', 'vipw', 'gssd', 'slaptest', 'automount', 'scselect', 'envvars-std', 'graphicssession', 'ckksctl', 'lpinfo', 'smbd', 'serverinfo', 'cvmkfs', 'postmap', 'postdrop', 'cupsenable', 'cron', 'systemstats', 'bnepd', 'kextstat', 'cvlabel', 'sendmail', 'systemkeychain', 'kcditto', 'slapcat', 'ipconfig', 'auditreduce', 'cvadmin', 'WirelessRadioManagerd', 'apachectl', 'htcacheclean'] ['mount_hfs', 'mount_apfs', 'md5', 'fsck', 'mount_udf', 'quotacheck', 'mount_cd9660', 'ping', 'fsck_exfat', 'mount_exfat', 'fsck_udf', 'shutdown', 'route', 'mount_webdav', 'fsck_hfs', 'nfsd', 'reboot', 'nfsiod', 'fsck_cs', 'fsck_apfs', 'fstyp_msdos', 'disklabel', 'mount_msdos', 'fsck_msdos', 'ifconfig', 'halt', 'mount_9p', 'mount_ntfs', 'rtsol', 'newfs_apfs', 'umount', 'fstyp', 'kextunload', 'mpioutil', 'fstyp_ntfs', 'emond', 'mount_nfs', 'newfs_udf', 'mount_ftp', 'pfctl', 'mknod', 'fstyp_udf', 'dmesg', 'mount', 'fibreconfig', 'fstyp_hfs', 'newfs_hfs', 'dynamic_pager', 'launchd', 'newfs_exfat', 'apfs_hfs_convert', 'nologin', 'mount_afp', 'mount_smbfs', 'ping6', 'kextload', 'mount_cddafs', 'mount_fdesc', 'newfs_msdos', 'mount_acfs', 'mount_devfs'] ['luajittex', 'lollipop', 't1disasm', 'chktex', 'rubikrotation', 'lily-rebuild-pdfs', 'weave', 'mag', 'man', 'ebb', 'prepmx', 'mktexlsr', 'gsftopk', 'upmendex', 'dvibook', 'kpsewhere', 'rumakeindex', 'fontinst', 'cef5conv', 'lacheck', 'httexi', 'lily-image-commands', 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'bg5+latex', 'pdfatfi', 'ptex2pdf', 'e2pall', 'kpsewhich', 'upbibtex', 'texdiff', 'mathspic', 'kanji-fontmap-creator', 'kanji-config-updmap', 'asy', 'typeoutfileinfo', 'chklref', 'upmpost', 'pdflatex', 'perltex', 'mkt1font', 'cefslatex', 'cjk-gs-integrate', 'chkdvifont', 'dvitype', 'pdfjadetex', 't1lint', 'jamo-normalize', 'fmtutil-sys', 'wofm2opl', 'dviasm', 'kpsestat', 'pdfxup', 'makedtx', 'pltotf', 'mkindex', 'dvilj6', 'r-pmpost', 'xindy.mem', 'xetex', 'latex', 'ps4pdf', 'multibibliography', 'teckit_compile', 'ttf2afm', 'biburl2doi', 'getmapdl', 'uptftopl', 'contextjit', 'bib2gls', 'texplate', 'match_parens', 'mkjobtexmf', 'updvitomp', 'ps2eps', 'pkfix-helper', 'chkweb', 'arlatex', 'pn2pdf', 'pdfclose', 'xindex', 'clxelatex', 'dosepsbin', 'jadetex', 'a2ping', 'bibzbladd', 'ovf2ovp', 'mfluajit-nowin', 'mpost', 'texosquery-jre5', 'texhash', 'convbkmk', 'thumbpdf', 'pkfix', 'dvihp', 'hbf2gf', 'xindy.run', 'texcount', 'texmfstart', 'latexrevise', 'cefpdflatex', 'texluac', 'dvicopy', 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'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'x86_64-apple-darwin19-gfortran-10', 'pylupdate5', '2to3-3.8', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'msgfmt', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'msgattrib', 'imgcmp', 'pcregrep', 'tiff2rgba', 'x86_64-apple-darwin19-gcc-10', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'xgettext', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'xmlif', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'gettextize', 'pelican-import', 'VBoxVRDP', 'msguniq', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] Warning accessing gives errors: [Errno 2] No such file or directory: '' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/opt/llvm/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/anaconda2/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/anaconda2/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/opt/miniconda2/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/miniconda2/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/opt/miniconda3/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/opt/texinfo/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/homebrew/sbin/opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/homebrew/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/homebrew/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /sbin/opt/rocm/bin/hipcc...not found Checking for program /Library/TeX/texbin/opt/rocm/bin/hipcc...not found Checking for program /opt/X11/bin/opt/rocm/bin/hipcc...not found Checking for program /Library/Apple/usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program opt/rocm/bin/hipcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found Unable to find programs ['opt/rocm/bin/hipcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['llvm-opt-report', 'llvm-lipo', 'modularize', 'llvm-cxxdump', 'clang-change-namespace', 'verify-uselistorder', 'llvm-cvtres', 'llvm-strings', 'clang-move', 'llvm-install-name-tool', 'clangd-xpc-test-client', 'llvm-config', 'clang', 'llvm-lto2', 'llvm-cfi-verify', 'llvm-cov', 'lld', 'llc', 'llvm-link', 'not', 'llvm-symbolizer', 'llvm-objdump', 'clang-refactor', 'clang-rename', 'clangd', 'llvm-mca', 'set-xcode-analyzer', 'llvm-rc', 'clang-include-fixer', 'llvm-addr2line', 'llvm-jitlink', 'llvm-xray', 'clang-format', 'lldb', 'llvm-rtdyld', 'FileCheck', 'clang-check', 'llvm-lto', 'pp-trace', 'llvm-c-test', 'c-index-test', 'llvm-dwp', 'count', 'llvm-reduce', 'llvm-elfabi', 'llvm-mc', 'clang-reorder-fields', 'llvm-exegesis', 'llvm-readelf', 'ld.lld', 'llvm-as', 'clang-query', 'scan-build', 'llvm-nm', 'llvm-lib', 'llvm-undname', 'clang-offload-bundler', 'lldb-argdumper', 'lldb-server', 'llvm-ar', 'find-all-symbols', 'clang-cl', 'llvm-dis', 'llvm-size', 'dsymutil', 'obj2yaml', 'clang-tidy', 'wasm-ld', 'llvm-dlltool', 'llvm-readobj', 'llvm-cxxfilt', 'bugpoint', 'llvm-pdbutil', 'clang-offload-wrapper', 'clang-doc', 'llvm-ifs', 'lli', 'llvm-PerfectShuffle', 'llvm-tblgen', 'lli-child-target', 'clang-scan-deps', 'clang++', 'sancov', 'darwin-debug', 'llvm-dwarfdump', 'opt', 'clang-cpp', 'clang-extdef-mapping', 'yaml-bench', 'llvm-cat', 'git-clang-format', 'llvm-profdata', 'clang-apply-replacements', 'llvm-objcopy', 'llvm-extract', 'yaml2obj', 'sanstats', 'llvm-split', 'llvm-bcanalyzer', 'clang-10', 'lldb-instr', 'hmaptool', 'llvm-stress', 'llvm-diff', 'scan-view', 'diagtool', 'llvm-modextract', 'clang-import-test', 'lld-link', 'llvm-strip', 'llvm-mt', 'ld64.lld', 'lldb-vscode', 'llvm-ranlib', 'llvm-cxxmap'] Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /Users/markadams/opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda2/bin' Warning accessing /opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/miniconda2/bin' Warning accessing /Users/markadams/opt/miniconda3/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda3/bin' ['texi2pdf', 'pod2texi', 'texindex', 'info', 'texi2dvi', 'pdftexi2dvi', 'texi2any', 'makeinfo', 'install-info'] Warning accessing /Users/markadams/homebrew/sbin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/sbin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' ['ndmetis', 'ppmtouil', 'pstoedit', 'lto-dump-10', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'msgconv', 'pbmtonokia', 'leaftoppm', 'g-ir-compiler', 'event_rpcgen.py', 'pnminvert', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'msggrep', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'autopoint', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'g-ir-annotation-tool', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'x86_64-apple-darwin19-gcc-ranlib-10', 'pbmtog3', 'gcc-ranlib-10', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'msgcomm', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gfortran', 'opj_dump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'png-fix-itxt', 'gcov-dump-10', 'pamslice', 'rst2latex.py', 'gfortran-10', 'c++-10', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'apm', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'atom', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'easy_install-3.8', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'VBoxManage', 'pngfix', 'zeisstopnm', 'vagrant', 'xmlto', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'gcov-tool-10', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'pktopbm', 'pgmtolispm', 'x86_64-apple-darwin19-c++-10', 'fiascotopnm', 'pamdepth', 'update-mime-database', 'VBoxHeadless', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'g-ir-generate', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'pnmsmooth', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'ppmtopi1', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'cpp-10', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'x86_64-apple-darwin19-gcc-ar-10', 'mpivars', 'msgen', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'python3.8', 'pnmtosir', 'pambackground', 'g-ir-inspect', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'msgmerge', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'envsubst', 'xz', 'ppmdither', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'VirtualBox', 'x86_64-apple-darwin19-gcc-nm-10', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'msginit', 'mongoose', 'rbox', 'lua', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'gcc-10', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'tiffset', 'tclsh', 'pip', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'gettext', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'gettext.sh', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'msgcmp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'g-ir-scanner', 'VBoxAutostart', 'dbtoepub', 'gcc-nm-10', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'ppmquant', 'g++-10', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'gcc-ar-10', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'h5diff', 'ppmtopgm', 'msgcat', 'pbmtopk', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'h5clear', 'psicc', 'pcretest', 'recode-sr-latin', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 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'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'idle3.8', 'h5repart', 'lzgrep', 'msgunfmt', 'pnmtoplainpnm', 'pamdeinterlace', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'msgfilter', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'python3.8-config', 'fc-conflist', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'x86_64-apple-darwin19-gfortran-10', 'pylupdate5', '2to3-3.8', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'msgfmt', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'msgattrib', 'imgcmp', 'pcregrep', 'tiff2rgba', 'x86_64-apple-darwin19-gcc-10', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'xgettext', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'xmlif', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'gettextize', 'pelican-import', 'VBoxVRDP', 'msguniq', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] ['ndmetis', 'ppmtouil', 'pstoedit', 'lto-dump-10', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'msgconv', 'pbmtonokia', 'leaftoppm', 'g-ir-compiler', 'event_rpcgen.py', 'pnminvert', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'msggrep', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'autopoint', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'g-ir-annotation-tool', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'x86_64-apple-darwin19-gcc-ranlib-10', 'pbmtog3', 'gcc-ranlib-10', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'pbmtodjvurle', 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'avmetareadwrite', 'update_dyld_shared_cache_root_mode', 'gen_bridge_metadata', 'gem', 'opendiff', 'h2xs5.18', 'talk', 'expect', 'jimage', 'lockstat', 'dapptrace', 'install-info', 'xattr', 'w', 'gunzip'] ['cat', 'echo', 'launchctl', 'df', 'pwd', 'test', 'csh', 'wait4path', 'unlink', 'sleep', 'stty', 'date', 'ed', 'expr', 'pax', 'bash', 'kill', 'sh', 'ps', 'link', 'tcsh', 'dd', 'mkdir', 'ksh', 'hostname', 'dash', 'rmdir', 'mv', 'ln', 'ls', 'cp', 'sync', 'zsh', 'chmod', 'rm', '['] ['dsconfigad', 'htdbm', 'netbiosd', 'postlock', 'systemsoundserverd', 'dseditgroup', 'avbdeviced', 'rpcinfo', 'BootCacheControl', 'weakpass_edit', 'periodic', 'accton', 'wfsctl', 'postalias', 'slapacl', 'edquota', 'sndiskmove', 'pdisk', 'amt', 'lpadmin', 'fdisk', 'sysadminctl', 'networksetup', 'envvars', 'ktutil', 'setquota', 'otctl', 'sncfgvalidate', 'php-fpm', 'AppleFileServer', 'dnctl', 'mDNSResponder', 'repquota', 'cupsfilter', 'checkgid', 'uuconv', 'sharing', 'vifs', 'ac', 'racoon', 'dsenableroot', 'xsanctl', 'kdcsetup', 'aslmanager', 'screencapture', 'htdigest', 'rtsold', 'chat', 'DevToolsSecurity', 'logresolve', 'cvdbset', 'KernelEventAgent', 'gpt', 'scutil', 'ioreg', 'ab', 'traceroute6', 'pwd_mkdb', 'sysctl', 'appsleepd', 'sshd', 'mDNSResponderHelper', 'authserver', 'sncfginstall', 'postmulti', 'lsof', 'pkgutil', 'slapindex', 'sc_auth', 'ioclasscount', 'uucico', 'firmwarepasswd', 'rarpd', 'tsig-keygen', 'kadmin.local', 'syslogd', 'taskpolicy', 'filecoordinationd', 'dot_clean', 'PasswordService', 'systemsetup', 'zdump', 'snmpd', 'ndp', 'coreaudiod', 'rpcbind', 'praudit', 'usernoted', 'postkick', 'postcat', 'netstat', 'lpc', 'slapadd', 'krbservicesetup', 'sncfgtemplate', 'slapconfig', 'rtadvd', 'httxt2dbm', 'distnoted', 'mtree', 'cupsdisable', 'lpmove', 'disktool', 'purge', 'rpc.statd', 'cupsctl', 'DirectoryService', 'notifyd', 'klist_cdhashes', 'dtrace', 'kextcache', 'cupsd', 'dbmmanage', 'languagesetup', 'skywalkctl', 'mkpassdb', 'postconf', 'createhomedir', 'ocspd', 'iostat', 'cvdb', 'sa', 'rpc.lockd', 'uuxqt', 'mkfile', 'softwareupdate', 'unsetpassword', 'zic', 'nfs4mapid', 'postsuper', 'htpasswd', 'rotatelogs', 'universalaccessd', 'audit', 'httpd', 'bluetoothaudiod', 'slapauth', 'slappasswd', 'localemanager', 'asr', 'cvupdatefs', 'bless', 'cvgather', 'xscertadmin', 'visudo', 'uusched', 'dsconfigldap', 'smbdiagnose', 'cfprefsd', 'auditd', 'uuchk', 'cvfsck', 'kextfind', 'diskutil', 'cvfsid', 'sso_util', 'vsdbutil', 'ddns-confgen', 'ioalloccount', 'uasysdiagnose', 'dev_mkdb', 'hdik', 'slapdn', 'vpnd', 'postqueue', 'setkey', 'tpctl', 'repairHomePermissions', 'spindump', 'cupsreject', 'traceroute', 'quotaoff', 'newsyslog', 'postfix', 'cvfsdb', 'snmptrapd', 'chroot', 'arp', 'cupsaccept', 'nvram', 'chown', 'mkextunpack', 'sncfgremove', 'sncfgquery', 'postlog', 'installer', 'pppd', 'httpd-wrapper', 'system_profiler', 'fcgistarter', 'bluetoothd', 'slapschema', 'kadmin', 'spray', 'cvversions', 'kextlibs', 'tcpdump', 'xartutil', 'securityd', 'nlcontrol', 'quotaon', 'spctl', 'vipw', 'gssd', 'slaptest', 'automount', 'scselect', 'envvars-std', 'graphicssession', 'ckksctl', 'lpinfo', 'smbd', 'serverinfo', 'cvmkfs', 'postmap', 'postdrop', 'cupsenable', 'cron', 'systemstats', 'bnepd', 'kextstat', 'cvlabel', 'sendmail', 'systemkeychain', 'kcditto', 'slapcat', 'ipconfig', 'auditreduce', 'cvadmin', 'WirelessRadioManagerd', 'apachectl', 'htcacheclean'] ['mount_hfs', 'mount_apfs', 'md5', 'fsck', 'mount_udf', 'quotacheck', 'mount_cd9660', 'ping', 'fsck_exfat', 'mount_exfat', 'fsck_udf', 'shutdown', 'route', 'mount_webdav', 'fsck_hfs', 'nfsd', 'reboot', 'nfsiod', 'fsck_cs', 'fsck_apfs', 'fstyp_msdos', 'disklabel', 'mount_msdos', 'fsck_msdos', 'ifconfig', 'halt', 'mount_9p', 'mount_ntfs', 'rtsol', 'newfs_apfs', 'umount', 'fstyp', 'kextunload', 'mpioutil', 'fstyp_ntfs', 'emond', 'mount_nfs', 'newfs_udf', 'mount_ftp', 'pfctl', 'mknod', 'fstyp_udf', 'dmesg', 'mount', 'fibreconfig', 'fstyp_hfs', 'newfs_hfs', 'dynamic_pager', 'launchd', 'newfs_exfat', 'apfs_hfs_convert', 'nologin', 'mount_afp', 'mount_smbfs', 'ping6', 'kextload', 'mount_cddafs', 'mount_fdesc', 'newfs_msdos', 'mount_acfs', 'mount_devfs'] ['luajittex', 'lollipop', 't1disasm', 'chktex', 'rubikrotation', 'lily-rebuild-pdfs', 'weave', 'mag', 'man', 'ebb', 'prepmx', 'mktexlsr', 'gsftopk', 'upmendex', 'dvibook', 'kpsewhere', 'rumakeindex', 'fontinst', 'cef5conv', 'lacheck', 'httexi', 'lily-image-commands', 'texloganalyser', 'dvilj', 'patgen', 'uptex', 'exceltex', 'pdvitype', 'texconfig-sys', 'xmltex', 'vlna', 'texsis', 'dvipdft', 'urlbst', 'pdfcslatex', 'afm2afm', 'cefconv', 'uplatex-dev', 'sjisconv', 'tex2xindy', 'musixtex', 'pdfcsplain', 'opl2ofm', 'de-macro', 'bbl2bib', 'ltx2crossrefxml', 'pdftex', 'r-mpost', 'dvitodvi', 'gftodvi', 'dviconcat', 'texluajitc', 'dvipng', 'pdflatex-dev', 'komkindex', 'tex', 'sty2dtx', 'ppltotf', 'yplan', 'eplain', 'eptex', 'lily-glyph-commands', 'htmex', 'texlua', 'htxelatex', 'xasy', 'fmtutil-user', 'wovp2ovf', 'dvilualatex', 'cefsconv', 'context', 'platex', 'allec', 'adhocfilelist', 'kpsetool', 'makejvf', 'texdoctk', 'xelatex-dev', 'vptovf', 'tex4ht', 'texluajit', 'mtxrunjit', 'uplatex', 'musixflx', 'pfarrei', 'mf', 'latexdiff-vc', 'ttfdump', 'etex', 'fig4latex', 'bibexport', 'ttf2tfm', 'latexmk', 'pmpost', 'ctwill', 'pst2pdf', 'wordcount', 'texconfig-dialog', 'luahbtex', 'lwarpmk', 'dvilj2p', 'dviinfox', 'ttf2kotexfont', 'ctanbib', 'cweave', 'bg5+latex', 'pdfatfi', 'ptex2pdf', 'e2pall', 'kpsewhich', 'upbibtex', 'texdiff', 'mathspic', 'kanji-fontmap-creator', 'kanji-config-updmap', 'asy', 'typeoutfileinfo', 'chklref', 'upmpost', 'pdflatex', 'perltex', 'mkt1font', 'cefslatex', 'cjk-gs-integrate', 'chkdvifont', 'dvitype', 'pdfjadetex', 't1lint', 'jamo-normalize', 'fmtutil-sys', 'wofm2opl', 'dviasm', 'kpsestat', 'pdfxup', 'makedtx', 'pltotf', 'mkindex', 'dvilj6', 'r-pmpost', 'xindy.mem', 'xetex', 'latex', 'ps4pdf', 'multibibliography', 'teckit_compile', 'ttf2afm', 'biburl2doi', 'getmapdl', 'uptftopl', 'contextjit', 'bib2gls', 'texplate', 'match_parens', 'mkjobtexmf', 'updvitomp', 'ps2eps', 'pkfix-helper', 'chkweb', 'arlatex', 'pn2pdf', 'pdfclose', 'xindex', 'clxelatex', 'dosepsbin', 'jadetex', 'a2ping', 'bibzbladd', 'ovf2ovp', 'mfluajit-nowin', 'mpost', 'texosquery-jre5', 'texhash', 'convbkmk', 'thumbpdf', 'pkfix', 'dvihp', 'hbf2gf', 'xindy.run', 'texcount', 'texmfstart', 'latexrevise', 'cefpdflatex', 'texluac', 'dvicopy', 'ctie', 'pdftex-quiet', 'euptex', 'pdftosrc', 'mf-nowin', 'ctangle', 'omfonts', 't1asm', 'mflua-nowin', 'cluttex', 'svn-multi', 'mk4ht', 'afm2tfm', 'pdfopen', 'fragmaster', 'ebong', 'ctanify', 'pygmentex', 'texdef', 'luatex', 'cslatex', 'synctex', 'texdirflatten', 'gbkpdflatex', 'xdvipdfmx', 'sjispdflatex', 'makeindex', 'dviluatex', 'mkofm', 'dvipdfmx', 'psbook', 'dvispc', 'csplain', 'ttftotype42', 'mft', 't1rawafm', 'fmtutil', 'ctwill-twinx', 'simpdftex', 'depythontex', 'otfinfo', 'latexindent', 'kanji-config-updmap-sys', 'extconv', 'disdvi', 'pdvitomp', 'dvipdfm', 'texliveonfly', 'allneeded', 'htcontext', 't1testpage', 'biber', 'dv2dt', 'xindy', 'pdfbook2', 't1unmac', 'xelatex', 'webquiz', 'kpsepath', 'diadia', 'makeglossaries', 'cef5pdflatex', 'autoinst', 'dvilualatex-dev', 'mkpic', 'splitindex', 'repstopdf', 'otangle', 'mfplain', 'latexfileversion', 'latex-git-log', 'inimf', 'lualatex-dev', 'latex2man', 'ps2pk', 'htxetex', 'l3build', 'ptftopl', 'ptex', 'gbklatex', 't1binary', 'bibtex', 't1dotlessj', 'mktexpk', 'detex', 'htlatex', 'odvicopy', 'dvidvi', 'extractres', 'extractbb', 'tie', 'latexdef', 'tlmgr', 'arara', 'ctan-o-mat', 'rubibtex', 'dvigif', 'gftype', 'ketcindy', 'kpseaccess', 'luacsplain', 'cachepic', 'srcredact', 'dtxgen', 'mmafm', 'pktype', 'platex-dev', 'kpsexpand', 'pktogf', 'msxlint', 't1reencode', 'vftovp', 'xhlatex', 'ht', 'mendex', 'make4ht', 'ceflatex', 'texlinks', 'pmxchords', 'mptopdf', 'afm2pl', 'mktexmf', 'lamed', 'gftopk', 'ulqda', 'dvilj4l', 'pooltype', 'bg5latex', 'bibmradd', 'aleph', 'wovf2ovp', 'pdfetex', 'dvi2tty', 'ofm2opl', 'pslatex', 'initex', 'latexpand', 'pamphletangler', 'mkgrkindex', 'mtxrun', 'epsffit', 'listings-ext.sh', 'mktexfmt', 'scor2prt', 'psnup', 'ot2kpx', 'allcm', 'pk2bm', 'dvitomp', 'texindy', 'vpl2vpl', 'luatools', 'cef5latex', 'ctwill-refsort', 'luajithbtex', 'bg5+pdflatex', 'dvisvgm', 'tex2aspc', 'bg5conv', 'deweb', 'tlcockpit', 'cfftot1', 'dviselect', 'odvitype', 'vpl2ovp', 'otp2ocp', 'latexdiff', 'dt2dv', 'bg5pdflatex', 'mf2pt1', 'psresize', 't1mac', 'epspdf', 'pythontex', 'bibtexu', 'authorindex', 'texosquery', 'tlshell', 'pdfxmltex', 'includeres', 't1ascii', 'pdflatexpicscale', 'mfluajit', 'axohelp', 'tangle', 'httex', 'texosquery-jre8', 'checkcites', 'bibtex8', 'dvi2fax', 'otftotfm', 'cefspdflatex', 'mmpfb', 'pfb2pfa', 'vpe', 'psselect', 'latex-dev', 'findhyph', 'gregorio', 'ovp2ovf', 'utf8mex', 'mflua', 'purifyeps', 'autosp', 'bundledoc', 'mllatex', 'tex4ebook', 'xdvi-xaw', 'sjislatex', 'rungs', 'dvilj4', 'ltxfileinfo', 'texconfig', 'updvitype', 'ltximg', 'updmap-user', 'dvips', 'convertgls2bib', 'latex2nemeth', 'pdfjam', 'epstopdf', 'outocp', 'pedigree', 'mkocp', 'kpsereadlink', 'ttf2pk', 'tpic2pdftex', 'kanji-config-updmap-user', 'psjoin', 'm-tx', 'uppltotf', 'texdoc', 'bbox', 'dvired', 'latex-papersize', 'makeglossaries-lite', 't4ht', 'xdvi', 'ps2frag', 'wopl2ofm', 'devnag', 'ctanupload', 'texexec', 'listbib', 'cllualatex', 'lualatex', 'pmxab', 'jfmutil', 'pdfmex', 'tftopl', 'mltex', 'amstex', 'pbibtex', 'pstops', 'optex', 'mex', 'bibdoiadd', 'updmap', 'dvipos', 'luaotfload-tool', 'epspdftk', 'updmap-sys', 'r-upmpost', 'mktextfm', 'texfot', 'checklistings', 'rpdfcrop', 'a5toa4', 'installfont-tl', 'pdfcrop', 'pdfannotextractor'] ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] ['rvictl'] ['ndmetis', 'ppmtouil', 'pstoedit', 'lto-dump-10', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'msgconv', 'pbmtonokia', 'leaftoppm', 'g-ir-compiler', 'event_rpcgen.py', 'pnminvert', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'msggrep', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'autopoint', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'g-ir-annotation-tool', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'x86_64-apple-darwin19-gcc-ranlib-10', 'pbmtog3', 'gcc-ranlib-10', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'msgcomm', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gfortran', 'opj_dump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'png-fix-itxt', 'gcov-dump-10', 'pamslice', 'rst2latex.py', 'gfortran-10', 'c++-10', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'apm', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'atom', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'easy_install-3.8', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'VBoxManage', 'pngfix', 'zeisstopnm', 'vagrant', 'xmlto', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'gcov-tool-10', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'pktopbm', 'pgmtolispm', 'x86_64-apple-darwin19-c++-10', 'fiascotopnm', 'pamdepth', 'update-mime-database', 'VBoxHeadless', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'g-ir-generate', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'pnmsmooth', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'ppmtopi1', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'cpp-10', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'x86_64-apple-darwin19-gcc-ar-10', 'mpivars', 'msgen', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'python3.8', 'pnmtosir', 'pambackground', 'g-ir-inspect', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'msgmerge', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'envsubst', 'xz', 'ppmdither', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'VirtualBox', 'x86_64-apple-darwin19-gcc-nm-10', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'msginit', 'mongoose', 'rbox', 'lua', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'gcc-10', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'tiffset', 'tclsh', 'pip', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'gettext', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'gettext.sh', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'msgcmp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'g-ir-scanner', 'VBoxAutostart', 'dbtoepub', 'gcc-nm-10', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'ppmquant', 'g++-10', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'gcc-ar-10', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'h5diff', 'ppmtopgm', 'msgcat', 'pbmtopk', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'h5clear', 'psicc', 'pcretest', 'recode-sr-latin', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'jpgicc', 'pydoc3.8', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'fc-cache', 'ppmtopj', 'pampop9', 'sip', 'tclselect', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'msgexec', 'rst2xml.py', 'pelican-themes', 'pyuic5', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'ngettext', 'git-clang-format', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'gcov-10', 'dwebp', 'x86_64-apple-darwin19-gcc-10.2.0', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'x86_64-apple-darwin19-g++-10', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'idle3.8', 'h5repart', 'lzgrep', 'msgunfmt', 'pnmtoplainpnm', 'pamdeinterlace', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'msgfilter', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'python3.8-config', 'fc-conflist', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'x86_64-apple-darwin19-gfortran-10', 'pylupdate5', '2to3-3.8', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'msgfmt', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'msgattrib', 'imgcmp', 'pcregrep', 'tiff2rgba', 'x86_64-apple-darwin19-gcc-10', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'xgettext', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'xmlif', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'gettextize', 'pelican-import', 'VBoxVRDP', 'msguniq', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] Warning accessing gives errors: [Errno 2] No such file or directory: '' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkHIPPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:845) TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:845) Placeholder for now ================================================================================ TEST checkSYCLCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:866) TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:866) Locate a functional SYCL compiler ================================================================================ TEST checkSYCLPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:892) TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:892) Placeholder for now ================================================================================ TEST checkCxxCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:981) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:981) Locate a functional Cxx compiler Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of each search directory to help debug Path provided in Python program ['mpif90', 'hydra_pmi_proxy', 'mpirun', 'mpiexec.hydra', 'mpivars', 'mpif77', 'mpichversion', 'mpicc', 'parkill', 'mpicxx', 'hydra_persist', 'mpiexec', 'mpic++', 'mpifort', 'hydra_nameserver'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of each search directory to help debug Path provided in Python program ['mpif90', 'hydra_pmi_proxy', 'mpirun', 'mpiexec.hydra', 'mpivars', 'mpif77', 'mpichversion', 'mpicc', 'parkill', 'mpicxx', 'hydra_persist', 'mpiexec', 'mpic++', 'mpifort', 'hydra_nameserver'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of each search directory to help debug Path provided in Python program ['mpif90', 'hydra_pmi_proxy', 'mpirun', 'mpiexec.hydra', 'mpivars', 'mpif77', 'mpichversion', 'mpicc', 'parkill', 'mpicxx', 'hydra_persist', 'mpiexec', 'mpic++', 'mpifort', 'hydra_nameserver'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx...found Defined make macro "CXX" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx --version stdout: clang version 10.0.1 Target: x86_64-apple-darwin19.6.0 Thread model: posix InstalledDir: /usr/local/opt/llvm/bin ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1022) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1022) Locate a functional Cxx preprocessor Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx...found Defined make macro "CXXPP" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkFortranCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1123) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1123) Locate a functional Fortran compiler Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpiifort...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiifort...not found Unable to find programs ['mpiifort'] providing listing of each search directory to help debug Path provided in Python program ['mpif90', 'hydra_pmi_proxy', 'mpirun', 'mpiexec.hydra', 'mpivars', 'mpif77', 'mpichversion', 'mpicc', 'parkill', 'mpicxx', 'hydra_persist', 'mpiexec', 'mpic++', 'mpifort', 'hydra_nameserver'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90...found Defined make macro "FC" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpif90" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 --version stdout: GNU Fortran (Homebrew GCC 10.2.0) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1160) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1160) Locate a functional Fortran preprocessor Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90...found Defined make macro "FPP" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -E" Deleting "FPP" Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90...found Defined make macro "FPP" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1182) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1182) Make sure fortran comment "!" works Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1317) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1317) ================================================================================ TEST checkArchiver from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1416) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1416) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V Running Executable WITHOUT threads to time it out Executing: ar -V Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/opt/llvm/bin/ar...not found Checking for program /opt/anaconda2/bin/ar...not found Checking for program /opt/anaconda2/bin/ar...not found Checking for program /Users/markadams/opt/miniconda2/bin/ar...not found Checking for program /opt/miniconda2/bin/ar...not found Checking for program /Users/markadams/opt/miniconda3/bin/ar...not found Checking for program /usr/local/opt/texinfo/bin/ar...not found Checking for program /Users/markadams/homebrew/sbin/ar...not found Checking for program /Users/markadams/homebrew/bin/ar...not found Checking for program /Users/markadams/homebrew/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/opt/llvm/bin/ranlib...not found Checking for program /opt/anaconda2/bin/ranlib...not found Checking for program /opt/anaconda2/bin/ranlib...not found Checking for program /Users/markadams/opt/miniconda2/bin/ranlib...not found Checking for program /opt/miniconda2/bin/ranlib...not found Checking for program /Users/markadams/opt/miniconda3/bin/ranlib...not found Checking for program /usr/local/opt/texinfo/bin/ranlib...not found Checking for program /Users/markadams/homebrew/sbin/ranlib...not found Checking for program /Users/markadams/homebrew/bin/ranlib...not found Checking for program /Users/markadams/homebrew/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/libconf1.a /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1531) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1531) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking shared linker /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc...found Defined make macro "LD_SHARED" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpicc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -dynamiclib -single_module /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid C linker flag -dynamiclib -single_module Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -undefined dynamic_lookup /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid C linker flag -undefined dynamic_lookup Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid C linker flag -multiply_defined suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: clang-10: error: unknown argument: '-no_compact_unwind' Rejecting linker flag -no_compact_unwind due to nonzero status from link Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -lconftest Using shared linker /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST checkLinkerMac from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1605) TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1605) Tests some Apple Mac specific linker flags Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined,suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined -Wl,suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid C linker flag -Wl,-commons,use_dylibs Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid C linker flag -Wl,-search_paths_first Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid C linker flag -Wl,-no_compact_unwind Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined,suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-commons,use_dylibs Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-search_paths_first Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-no_compact_unwind Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined,suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined -Wl,suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid FC linker flag -Wl,-commons,use_dylibs Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid FC linker flag -Wl,-search_paths_first Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid FC linker flag -Wl,-no_compact_unwind Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST checkPIC from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1260) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1260) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying FC for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Accepted FC PIC code without compiler flag ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1643) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1643) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-rpath,/Users/markadams/Codes/petsc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/Users/markadams/Codes/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-rpath,/Users/markadams/Codes/petsc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/Users/markadams/Codes/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -V Trying FC linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-rpath,/Users/markadams/Codes/petsc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/Users/markadams/Codes/petsc ================================================================================ TEST checkLibC from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1682) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1682) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1728) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1728) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking dynamic linker /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc using flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpicc" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -ldl Valid C linker flag -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -ldl Using dynamic linker /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc with flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] and library extension dylib ================================================================================ TEST output from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1777) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1777) Output module data as defines and substitutions Substituting "CC" with "/usr/local/Cellar/mpich/3.3.2_1/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "/usr/local/Cellar/mpich/3.3.2_1/bin/mpif90" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" child config.setCompilers 9.741241 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/options/sharedLibraries.py:31) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:31) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/options/sharedLibraries.py:47) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:47) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(2).dylib" Defined make macro "SL_LINKER_FUNCTION" to "-dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/options/sharedLibraries.py:92) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/options/sharedLibraries.py:98) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.009189 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/Users/markadams/Codes/petsc/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.000512 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilerFlags.py:81) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:81) Get the default compiler flags Defined make macro "C_VERSION" to "clang version 10.0.1 " Defined make macro "MPICC_SHOW" to "clang -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.3.2_1/include -L/usr/local/Cellar/mpich/3.3.2_1/lib -lmpi -lpmpi" Trying C compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -fno-stack-check Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fno-stack-check Trying C compiler flag -mfp16-format=ieee Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang-10: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to clang-10: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -Qunused-arguments Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Qunused-arguments Trying C compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Trying C compiler flag -g -O0 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g -O0 Defined make macro "Cxx_VERSION" to "clang version 10.0.1 " Defined make macro "MPICXX_SHOW" to "clang++ -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.3.2_1/include -L/usr/local/Cellar/mpich/3.3.2_1/lib -lmpicxx -lmpi -lpmpi" Trying Cxx compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fno-stack-check Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fno-stack-check Trying Cxx compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g -O0 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g -O0 Defined make macro "FC_VERSION" to "GNU Fortran (Homebrew GCC 10.2.0) 10.2.0" Defined make macro "MPIFC_SHOW" to "gfortran -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.3.2_1/include -I/usr/local/Cellar/mpich/3.3.2_1/include -L/usr/local/Cellar/mpich/3.3.2_1/lib -lmpifort -lmpi -lpmpi" Trying FC compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -g -O0 -fallow-argument-mismatch Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -g -O0 -fallow-argument-mismatch child config.compilerFlags 1.987922 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang-10 [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. ================================================================================ TEST checkC99Flag from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1418) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1418) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: ================================================================================ TEST checkRestrict from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:156) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -V All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:411) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:411) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:126) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:126) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:422) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:422) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:220) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:220) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1369) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1369) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang-10 [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. ================================================================================ TEST checkRestrict from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:156) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -V Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxDialect from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:469) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:469) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc:18:42: warning: unused variable 'I' [-Wunused-variable] constexpr std::complex I(0.0,1.0); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:441) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:441) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: clang-10: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:141) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:141) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:553) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:553) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::_DeallocateCaller::__do_call(void*) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::__vector_base >::__vector_base() in confc.o std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o std::__1::ostreambuf_iterator >::ostreambuf_iterator(std::__1::basic_ostream >&) in confc.o ... ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc --help | head -n 500 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/confc.o -lc++ -ldl compilers: C++ requires -lc++ to link with C compiler Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/confc.o -lc++ -ldl C++ libraries are not needed when using FC linker Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -V ================================================================================ TEST checkFortranNameMangling from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:860) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:860) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/confc.o -lc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 --version stdout: GNU Fortran (Homebrew GCC 10.2.0) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Defined "FORTRAN_CHARLEN_T" to "size_t" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:898) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:898) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _MAIN__ in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status ================================================================================ TEST checkFortranLibraries from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:908) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:908) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_mpi_allreduce_", referenced from: _asub_ in confc.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -lc++ -ldl stdout: mpifort for MPICH version 3.3.2 Possible ERROR while running linker: stdout: mpifort for MPICH version 3.3.2stderr: Driving: gfortran -Wl,-flat_namespace -Wl,-commons,use_dylibs -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -lc++ -ldl -I/usr/local/Cellar/mpich/3.3.2_1/include -I/usr/local/Cellar/mpich/3.3.2_1/include -L/usr/local/Cellar/mpich/3.3.2_1/lib -lmpifort -lmpi -lpmpi -mmacosx-version-min=10.15.0 -asm_macosx_version_min=10.15 -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/lto-wrapper Target: x86_64-apple-darwin19 Configured with: ../configure --build=x86_64-apple-darwin19 --prefix=/usr/local/Cellar/gcc/10.2.0 --libdir=/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 --disable-nls --enable-checking=release --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-10 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --with-pkgversion='Homebrew GCC 10.2.0' --with-bugurl=https://github.com/Homebrew/homebrew-core/issues --disable-multilib --with-native-system-header-dir=/usr/include --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk SED=/usr/bin/sed Thread model: posix Supported LTO compression algorithms: zlib gcc version 10.2.0 (Homebrew GCC 10.2.0) Reading specs from /usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-fallow-argument-mismatch' '-I' '/usr/local/Cellar/mpich/3.3.2_1/include' '-I' '/usr/local/Cellar/mpich/3.3.2_1/include' '-L/usr/local/Cellar/mpich/3.3.2_1/lib' '-mmacosx-version-min=10.15.0' '-asm_macosx_version_min=10.15' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/:/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/ LIBRARY_PATH=/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../../ COLLECT_GCC_OPTIONS='-o' '/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O0' '-fallow-argument-mismatch' '-I' '/usr/local/Cellar/mpich/3.3.2_1/include' '-I' '/usr/local/Cellar/mpich/3.3.2_1/include' '-L/usr/local/Cellar/mpich/3.3.2_1/lib' '-mmacosx-version-min=10.15.0' '-asm_macosx_version_min=10.15' '-shared-libgcc' '-mtune=core2' /usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.15.0 -weak_reference_mismatches non-weak -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -L/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -flat_namespace -commons use_dylibs -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -lc++ -lmpifort -lmpi -lpmpi -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v -idsym collect2 version 10.2.0 /usr/bin/ld -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.15.0 -weak_reference_mismatches non-weak -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -L/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. -flat_namespace -commons use_dylibs -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -lc++ -lmpifort -lmpi -lpmpi -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v @(#)PROGRAM:ld PROJECT:ld64-556.6 BUILD 17:57:49 Apr 24 2020 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em Library search paths: /usr/local/Cellar/mpich/3.3.2_1/lib /usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 /usr/local/Cellar/gcc/10.2.0/lib/gcc/10 /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib Framework search paths: /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/ compilers: Checking arg mpifort compilers: Unknown arg mpifort compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.3.2 compilers: Unknown arg 3.3.2 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -Wl,-flat_namespace compilers: Unknown arg -Wl,-flat_namespace compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wl,-multiply_defined,suppress compilers: Unknown arg -Wl,-multiply_defined,suppress compilers: Checking arg -Wl,-multiply_defined compilers: Unknown arg -Wl,-multiply_defined compilers: Checking arg -Wl,suppress compilers: Unknown arg -Wl,suppress compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -Wl,-search_paths_first compilers: Unknown arg -Wl,-search_paths_first compilers: Checking arg -Wl,-no_compact_unwind compilers: Unknown arg -Wl,-no_compact_unwind compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -O0 compilers: Unknown arg -O0 compilers: Checking arg -fallow-argument-mismatch compilers: Unknown arg -fallow-argument-mismatch compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Found library: -lc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -I/usr/local/Cellar/mpich/3.3.2_1/include compilers: Found include directory: /usr/local/Cellar/mpich/3.3.2_1/include compilers: Checking arg -I/usr/local/Cellar/mpich/3.3.2_1/include compilers: Found include directory: /usr/local/Cellar/mpich/3.3.2_1/include compilers: Checking arg -L/usr/local/Cellar/mpich/3.3.2_1/lib compilers: Found library directory: -L/usr/local/Cellar/mpich/3.3.2_1/lib compilers: Checking arg -lmpifort compilers: Found library: -lmpifort compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -lpmpi compilers: Found library: -lpmpi compilers: Checking arg -mmacosx-version-min=10.15.0 compilers: Unknown arg -mmacosx-version-min=10.15.0 compilers: Checking arg -asm_macosx_version_min=10.15 compilers: Unknown arg -asm_macosx_version_min=10.15 compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin19 compilers: Unknown arg x86_64-apple-darwin19 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --build=x86_64-apple-darwin19 compilers: Unknown arg --build=x86_64-apple-darwin19 compilers: Checking arg --prefix=/usr/local/Cellar/gcc/10.2.0 compilers: Unknown arg --prefix=/usr/local/Cellar/gcc/10.2.0 compilers: Checking arg --libdir=/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 compilers: Unknown arg --libdir=/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 compilers: Checking arg --disable-nls compilers: Unknown arg --disable-nls compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --enable-languages=c,c++,objc,obj-c++,fortran compilers: Unknown arg --enable-languages=c,c++,objc,obj-c++,fortran compilers: Checking arg --program-suffix=-10 compilers: Unknown arg --program-suffix=-10 compilers: Checking arg --with-gmp=/usr/local/opt/gmp compilers: Unknown arg --with-gmp=/usr/local/opt/gmp compilers: Checking arg --with-mpfr=/usr/local/opt/mpfr compilers: Unknown arg --with-mpfr=/usr/local/opt/mpfr compilers: Checking arg --with-mpc=/usr/local/opt/libmpc compilers: Unknown arg --with-mpc=/usr/local/opt/libmpc compilers: Checking arg --with-isl=/usr/local/opt/isl compilers: Unknown arg --with-isl=/usr/local/opt/isl compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=https://github.com/Homebrew/homebrew-core/issues compilers: Unknown arg --with-bugurl=https://github.com/Homebrew/homebrew-core/issues compilers: Checking arg --disable-multilib compilers: Unknown arg --disable-multilib compilers: Checking arg --with-native-system-header-dir=/usr/include compilers: Unknown arg --with-native-system-header-dir=/usr/include compilers: Checking arg --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk compilers: Unknown arg --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk compilers: Checking arg SED=/usr/bin/sed compilers: Unknown arg SED=/usr/bin/sed compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg Supported compilers: Unknown arg Supported compilers: Checking arg LTO compilers: Unknown arg LTO compilers: Checking arg compression compilers: Unknown arg compression compilers: Checking arg algorithms: compilers: Unknown arg algorithms: compilers: Checking arg zlib compilers: Unknown arg zlib compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 10.2.0 compilers: Unknown arg 10.2.0 compilers: Checking arg (Homebrew compilers: Unknown arg (Homebrew compilers: Checking arg GCC compilers: Unknown arg GCC compilers: Checking arg 10.2.0) compilers: Unknown arg 10.2.0) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec compilers: Unknown arg /usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/:/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/ compilers: Skipping arg COMPILER_PATH=/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/:/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/ compilers: Checking arg LIBRARY_PATH=/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../../ compilers: Skipping arg LIBRARY_PATH=/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../../ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 compilers: Unknown arg /usr/local/Cellar/gcc/10.2.0/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 compilers: Checking arg -syslibroot compilers: Unknown arg -syslibroot compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.15.0 compilers: Unknown arg 10.15.0 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest compilers: Checking arg -L/usr/local/Cellar/mpich/3.3.2_1/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/mpich/3.3.2_1/lib compilers: Checking arg -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 compilers: Found library directory: -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. compilers: Found library directory: -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 compilers: Checking arg -flat_namespace compilers: Unknown arg -flat_namespace compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Already in lflags: -lc++ compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lpmpi compilers: Already in lflags: -lpmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -idsym compilers: Unknown arg -idsym compilers: Checking arg collect2 compilers: Unknown arg collect2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 10.2.0 compilers: Unknown arg 10.2.0 compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg -syslibroot compilers: Unknown arg -syslibroot compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.15.0 compilers: Unknown arg 10.15.0 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest compilers: Checking arg -L/usr/local/Cellar/mpich/3.3.2_1/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/mpich/3.3.2_1/lib compilers: Checking arg -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0/../../.. compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 compilers: Checking arg -flat_namespace compilers: Unknown arg -flat_namespace compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o compilers: Unknown arg /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Already in lflags: -lc++ compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lpmpi compilers: Already in lflags: -lpmpi compilers: Checking arg -lgfortran compilers: Already in lflags: -lgfortran compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Already in lflags: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg @(#)PROGRAM:ld compilers: Unknown arg @(#)PROGRAM:ld compilers: Checking arg PROJECT:ld64-556.6 compilers: Unknown arg PROJECT:ld64-556.6 compilers: Checking arg BUILD compilers: Unknown arg BUILD compilers: Checking arg 17:57:49 compilers: Unknown arg 17:57:49 compilers: Checking arg Apr compilers: Unknown arg Apr compilers: Checking arg 24 compilers: Unknown arg 24 compilers: Checking arg 2020 compilers: Unknown arg 2020 compilers: Checking arg configured compilers: Unknown arg configured compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg support compilers: Unknown arg support compilers: Checking arg archs: compilers: Unknown arg archs: compilers: Checking arg armv6 compilers: Unknown arg armv6 compilers: Checking arg armv7 compilers: Unknown arg armv7 compilers: Checking arg armv7s compilers: Unknown arg armv7s compilers: Checking arg arm64 compilers: Unknown arg arm64 compilers: Checking arg arm64e compilers: Unknown arg arm64e compilers: Checking arg arm64_32 compilers: Unknown arg arm64_32 compilers: Checking arg i386 compilers: Unknown arg i386 compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg x86_64h compilers: Unknown arg x86_64h compilers: Checking arg armv6m compilers: Unknown arg armv6m compilers: Checking arg armv7k compilers: Unknown arg armv7k compilers: Checking arg armv7m compilers: Unknown arg armv7m compilers: Checking arg armv7em compilers: Unknown arg armv7em compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /usr/local/Cellar/mpich/3.3.2_1/lib compilers: Unknown arg /usr/local/Cellar/mpich/3.3.2_1/lib compilers: Checking arg /usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 compilers: Unknown arg /usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 compilers: Checking arg /usr/local/Cellar/gcc/10.2.0/lib/gcc/10 compilers: Unknown arg /usr/local/Cellar/gcc/10.2.0/lib/gcc/10 compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib compilers: Checking arg Framework compilers: Unknown arg Framework compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/ compilers: Libraries needed to link Fortran code with the C linker: ['-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib', '-L/usr/local/Cellar/mpich/3.3.2_1/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10', '-L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10', '-lgfortran', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/mpich/3.3.2_1/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lgfortran -lquadmath -lm -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/mpich/3.3.2_1/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lgfortran -lquadmath -lm -lc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/mpich/3.3.2_1/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lgfortran -lquadmath -lm -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/mpich/3.3.2_1/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lgfortran -lquadmath -lm -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/mpich/3.3.2_1/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lgfortran -lquadmath -lm -lc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/mpich/3.3.2_1/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lgfortran -lquadmath -lm -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1334) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1334) Check that Fortran can link C++ libraries Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/cxxobj.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers/confc.o -lc++ -ldl compilers: Fortran can link C++ functions ================================================================================ TEST setupFrameworkCompilers from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1489) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1489) child config.compilers 8.204035 ================================================================================ TEST configureClosure from config.utilities.closure(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure/conftest.c:6:7: warning: unused variable 'closure' [-Wunused-variable] int (^closure)(int);; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure/conftest.o -lc++ -ldl Defined "HAVE_CLOSURE" to "1" child config.utilities.closure 0.247257 ================================================================================ TEST checkFortranTypeSizes from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:56) TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90:2:21: 2 | real*8 variable | 1 Warning: Unused variable 'variable' declared at (1) [-Wunused-variable] Source: program main real*8 variable end ================================================================================ TEST checkFortranPreprocessor from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:73) TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end compilers: Fortran uses preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:96) TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch -DTesting /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortran90 from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:146) TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90:3:43: 3 | REAL(KIND=SELECTED_REAL_KIND(10)) d | 1 Warning: Unused variable 'd' declared at (1) [-Wunused-variable] Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -lc++ -ldl Fortran compiler supports F90 ================================================================================ TEST checkFortran90FreeForm from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:162) TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -lc++ -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ================================================================================ TEST checkFortran2003 from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:176) TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90:21:0: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | Warning: 'carray.data' may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90:21:0: Warning: 'carray.offset' may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90:21:0: Warning: 'carray.dim[0].lbound' may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90:21:0: Warning: 'carray.dim[0].ubound' may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90:21:0: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | Warning: 'carray.dim[0].stride' may be used uninitialized in this function [-Wmaybe-uninitialized] Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -lc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ================================================================================ TEST checkFortran90Array from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:211) TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/fooobj.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest stdout: arrays [0x7ffeecfa2390 0x7ffeecfa2390 0x7ffeecfa2390] arrays [0x7ffeecfa2330 0x7ffeecfa22d0 0x7ffeecfa2330] pointers do not match! [0x130a8 0x7ffeecfa2390] [0x0] ERROR while running executable: Could not execute "['/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest']": arrays [0x7ffeecfa2390 0x7ffeecfa2390 0x7ffeecfa2390] arrays [0x7ffeecfa2330 0x7ffeecfa22d0 0x7ffeecfa2330] pointers do not match! [0x130a8 0x7ffeecfa2390] [0x0] compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortran90AssumedType from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:298) TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -qversion ================================================================================ TEST checkFortranModuleInclude from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:303) TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/configtest.o -lc++ -ldl compilers: Fortran module include flag -I found ================================================================================ TEST checkFortranModuleOutput from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:369) TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -module /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command-line option '-module' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -module:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command-line option '-module:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -fmod=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command-line option '-fmod=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -J/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found ================================================================================ TEST checkFortranTypeStar from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:135) TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ================================================================================ TEST checkFortranTypeInitialize from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:125) TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ================================================================================ TEST configureFortranFlush from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:116) TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran/conftest.o -lc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ================================================================================ TEST checkDependencyGenerationFlag from config.compilersFortran(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilersFortran.py:414) TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers/conftest.F90 Successful compile: Source: program main end child config.compilersFortran 2.099127 ================================================================================ TEST checkStdC from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:8:8: warning: if statement has empty body [-Wempty-body] if (pi); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:8:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found#include ^~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found#include ^~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found#include ^~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found#include ^~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~1 error generated.: ================================================================================ TEST checkRecursiveMacros from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 5.011432 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest.c:4:60: error: use of undeclared identifier '_SC_LEVEL1_DCACHE_LINESIZE'; did you mean 'getconf_LEVEL1_DCACHE_LINESIZE'? long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^~~~~~~~~~~~~~~~~~~~~~~~~~ getconf_LEVEL1_DCACHE_LINESIZE /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest.c:4:6: note: 'getconf_LEVEL1_DCACHE_LINESIZE' declared here long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.607475 ================================================================================ TEST check_struct_sigaction from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:42) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:48) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/i386/_types.h:46:33: note: '__int64_t' declared here typedef long long __int64_t; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:54) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:64) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:59) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:70) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:74) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:81) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -lc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:92) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.cc:6:22: warning: unused variable 'x' [-Wunused-variable] std::complex x; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -lc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkConst from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:103) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:24:16: warning: if statement has empty body [-Wempty-body] if (zero.x); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:24:16: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:25:14: warning: if statement has empty body [-Wempty-body] if (x[0]); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:25:14: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:31:14: warning: if statement has empty body [-Wempty-body] if (*s); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:31:14: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:52:15: warning: if statement has empty body [-Wempty-body] if (foo); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:52:15: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:46:20: warning: variable 'b' is uninitialized when used here [-Wuninitialized] struct s *b; b->j = 5; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:46:18: note: initialize the variable 'b' to silence this warning struct s *b; b->j = 5; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:30:8: warning: variable 't' is uninitialized when used here [-Wuninitialized] *t++ = 0; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c:27:14: note: initialize the variable 't' to silence this warning char *t; ^ = 0 6 warnings generated. Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:159) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkVisibility from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:193) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ================================================================================ TEST checkMaxPathLen from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:215) TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types/conftest.c Defined "MAX_PATH_LEN" to "1024" child config.types 3.014964 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/Users/markadams/Codes/petsc/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.000828 ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang-10: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang-10: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang-10: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang-10: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkMath from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl CheckMath: using math library [] ================================================================================ TEST checkMathErf from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathLgamma from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:301) TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:314) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:322) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:331) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:347) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -ldl -lc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 2.775634 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/Users/markadams/Codes/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [ADIOI_BGL_Open] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/Users/markadams/Codes/petsc/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.481728 child config.atomics 0.000011 ================================================================================ TEST checkSysinfo from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkVPrintf from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:6:25: error: assigning to 'int' from incompatible type 'void' int ierr; void *p; ierr = free(p); return 0; ^ ~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen fpresetsticky drand48 socket popen getrusage _mkdir time fpsetsticky stricmp] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:16:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:16:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:19:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:19:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:44:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:44:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char fpresetsticky(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char fpsetsticky(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [rand getdomainname realpath dlsym bzero getwd uname usleep dlclose gethostname clock] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:17:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:17:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char getwd(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Checking for functions [dlerror fork getpagesize gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:18:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:18:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); char fork(); char getpagesize(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_DLERROR" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [snprintf] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:13:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c:13:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_pipe] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_lseek] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [sleep] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [lseek] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [sbreak] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [memalign] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [getcwd] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [PXFGETARG] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [fpresetsticky] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_mkdir] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [fpsetsticky] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [stricmp] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-10: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkMmap from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 7.935226 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize/conftest.c:38:18: warning: implicit declaration of function 'getpagesize' is invalid in C99 [-Wimplicit-function-declaration] f2 = getpagesize() * ((double)(temp2.ru_maxrss-temp1.ru_maxrss))/(4.0*ARRAYSIZE); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize/conftest.c:58:2: error: expected '}' } ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize/conftest.c:12:12: note: to match this '{' int main() { ^ 1 warning and 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link output from getrusage() child config.utilities.getResidentSetSize 0.131630 ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpif90 -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -fallow-argument-mismatch /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.190830 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: 'sysctl.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.c:7:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t mset; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.c:8:1: warning: implicit declaration of function 'CPU_ZERO' is invalid in C99 [-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros/conftest.c:8:11: error: use of undeclared identifier 'mset' CPU_ZERO(&mset);; ^ 1 warning and 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } child config.utilities.featureTestMacros 0.414885 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c:21:7: warning: incompatible pointer types initializing 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an expression of type 'int (char *, int)' [-Wincompatible-pointer-types] int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.cc:21:7: error: cannot initialize a variable of type 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an lvalue of type 'int (char *, int)': type mismatch at 2nd parameter ('size_t' (aka 'unsigned long') vs 'int') int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -lc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing/conftest.o -lc++ -ldl child config.utilities.missing 3.453257 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found#include ^~~~~~~~~~1 error generated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found#include ^~~~~~~~~1 error generated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 352 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found#include ^~~~~~~~~~~~~~~~~1 error generated.: child config.utilities.FPTrap 0.160465 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/Users/markadams/Codes/petsc/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNORMAL" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNAN" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/Users/markadams/Codes/petsc/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c:4:10: fatal error: 'quadmath.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 0.917019 ================================================================================ TEST configureMkdir from config.programs(/Users/markadams/Codes/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/opt/llvm/bin/mkdir...not found Checking for program /opt/anaconda2/bin/mkdir...not found Checking for program /opt/anaconda2/bin/mkdir...not found Checking for program /Users/markadams/opt/miniconda2/bin/mkdir...not found Checking for program /opt/miniconda2/bin/mkdir...not found Checking for program /Users/markadams/opt/miniconda3/bin/mkdir...not found Checking for program /usr/local/opt/texinfo/bin/mkdir...not found Checking for program /Users/markadams/homebrew/sbin/mkdir...not found Checking for program /Users/markadams/homebrew/bin/mkdir...not found Checking for program /Users/markadams/homebrew/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Running Executable WITHOUT threads to time it out Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/Users/markadams/Codes/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/opt/llvm/bin/autoreconf...not found Checking for program /opt/anaconda2/bin/autoreconf...not found Checking for program /opt/anaconda2/bin/autoreconf...not found Checking for program /Users/markadams/opt/miniconda2/bin/autoreconf...not found Checking for program /opt/miniconda2/bin/autoreconf...not found Checking for program /Users/markadams/opt/miniconda3/bin/autoreconf...not found Checking for program /usr/local/opt/texinfo/bin/autoreconf...not found Checking for program /Users/markadams/homebrew/sbin/autoreconf...not found Checking for program /Users/markadams/homebrew/bin/autoreconf...not found Checking for program /Users/markadams/homebrew/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...found All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.programs Running Executable WITHOUT threads to time it out Executing: ['/usr/local/bin/autoreconf'] autoreconf test successful! Checking for program /usr/local/opt/llvm/bin/libtoolize...not found Checking for program /opt/anaconda2/bin/libtoolize...not found Checking for program /opt/anaconda2/bin/libtoolize...not found Checking for program /Users/markadams/opt/miniconda2/bin/libtoolize...not found Checking for program /opt/miniconda2/bin/libtoolize...not found Checking for program /Users/markadams/opt/miniconda3/bin/libtoolize...not found Checking for program /usr/local/opt/texinfo/bin/libtoolize...not found Checking for program /Users/markadams/homebrew/sbin/libtoolize...not found Checking for program /Users/markadams/homebrew/bin/libtoolize...not found Checking for program /Users/markadams/homebrew/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/Users/markadams/Codes/petsc/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /usr/local/opt/llvm/bin/sh...not found Checking for program /opt/anaconda2/bin/sh...not found Checking for program /opt/anaconda2/bin/sh...not found Checking for program /Users/markadams/opt/miniconda2/bin/sh...not found Checking for program /opt/miniconda2/bin/sh...not found Checking for program /Users/markadams/opt/miniconda3/bin/sh...not found Checking for program /usr/local/opt/texinfo/bin/sh...not found Checking for program /Users/markadams/homebrew/sbin/sh...not found Checking for program /Users/markadams/homebrew/bin/sh...not found Checking for program /Users/markadams/homebrew/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/local/opt/llvm/bin/sed...not found Checking for program /opt/anaconda2/bin/sed...not found Checking for program /opt/anaconda2/bin/sed...not found Checking for program /Users/markadams/opt/miniconda2/bin/sed...not found Checking for program /opt/miniconda2/bin/sed...not found Checking for program /Users/markadams/opt/miniconda3/bin/sed...not found Checking for program /usr/local/opt/texinfo/bin/sed...not found Checking for program /Users/markadams/homebrew/sbin/sed...not found Checking for program /Users/markadams/homebrew/bin/sed...not found Checking for program /Users/markadams/homebrew/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Running Executable WITHOUT threads to time it out Executing: /usr/bin/sed -i s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.programs/sed1" Rejected SEDINPLACE cmd: /usr/bin/sed -i Running Executable WITHOUT threads to time it out Executing: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i "" Defined make macro "SEDINPLACE" to "/usr/bin/sed -i """ Checking for program /usr/local/opt/llvm/bin/mv...not found Checking for program /opt/anaconda2/bin/mv...not found Checking for program /opt/anaconda2/bin/mv...not found Checking for program /Users/markadams/opt/miniconda2/bin/mv...not found Checking for program /opt/miniconda2/bin/mv...not found Checking for program /Users/markadams/opt/miniconda3/bin/mv...not found Checking for program /usr/local/opt/texinfo/bin/mv...not found Checking for program /Users/markadams/homebrew/sbin/mv...not found Checking for program /Users/markadams/homebrew/bin/mv...not found Checking for program /Users/markadams/homebrew/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/local/opt/llvm/bin/cp...not found Checking for program /opt/anaconda2/bin/cp...not found Checking for program /opt/anaconda2/bin/cp...not found Checking for program /Users/markadams/opt/miniconda2/bin/cp...not found Checking for program /opt/miniconda2/bin/cp...not found Checking for program /Users/markadams/opt/miniconda3/bin/cp...not found Checking for program /usr/local/opt/texinfo/bin/cp...not found Checking for program /Users/markadams/homebrew/sbin/cp...not found Checking for program /Users/markadams/homebrew/bin/cp...not found Checking for program /Users/markadams/homebrew/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/local/opt/llvm/bin/grep...not found Checking for program /opt/anaconda2/bin/grep...not found Checking for program /opt/anaconda2/bin/grep...not found Checking for program /Users/markadams/opt/miniconda2/bin/grep...not found Checking for program /opt/miniconda2/bin/grep...not found Checking for program /Users/markadams/opt/miniconda3/bin/grep...not found Checking for program /usr/local/opt/texinfo/bin/grep...not found Checking for program /Users/markadams/homebrew/sbin/grep...not found Checking for program /Users/markadams/homebrew/bin/grep...not found Checking for program /Users/markadams/homebrew/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/opt/llvm/bin/rm...not found Checking for program /opt/anaconda2/bin/rm...not found Checking for program /opt/anaconda2/bin/rm...not found Checking for program /Users/markadams/opt/miniconda2/bin/rm...not found Checking for program /opt/miniconda2/bin/rm...not found Checking for program /Users/markadams/opt/miniconda3/bin/rm...not found Checking for program /usr/local/opt/texinfo/bin/rm...not found Checking for program /Users/markadams/homebrew/sbin/rm...not found Checking for program /Users/markadams/homebrew/bin/rm...not found Checking for program /Users/markadams/homebrew/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/local/opt/llvm/bin/diff...not found Checking for program /opt/anaconda2/bin/diff...not found Checking for program /opt/anaconda2/bin/diff...not found Checking for program /Users/markadams/opt/miniconda2/bin/diff...not found Checking for program /opt/miniconda2/bin/diff...not found Checking for program /Users/markadams/opt/miniconda3/bin/diff...not found Checking for program /usr/local/opt/texinfo/bin/diff...not found Checking for program /Users/markadams/homebrew/sbin/diff...not found Checking for program /Users/markadams/homebrew/bin/diff...not found Checking for program /Users/markadams/homebrew/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Running Executable WITHOUT threads to time it out Executing: "/usr/bin/diff" -w "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.programs/diff1" "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Defined make macro "PYTHON" to "/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python" Checking for program /usr/local/opt/llvm/bin/m4...not found Checking for program /opt/anaconda2/bin/m4...not found Checking for program /opt/anaconda2/bin/m4...not found Checking for program /Users/markadams/opt/miniconda2/bin/m4...not found Checking for program /opt/miniconda2/bin/m4...not found Checking for program /Users/markadams/opt/miniconda3/bin/m4...not found Checking for program /usr/local/opt/texinfo/bin/m4...not found Checking for program /Users/markadams/homebrew/sbin/m4...not found Checking for program /Users/markadams/homebrew/bin/m4...not found Checking for program /Users/markadams/homebrew/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 2.537270 ================================================================================ TEST consistencyChecks from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:931) TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:931) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureMake from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/make.py:96) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Running Executable WITHOUT threads to time it out Executing: gmake --version GNUMake check failed: Could not execute "['gmake --version']": /bin/sh: gmake: command not found Running Executable WITHOUT threads to time it out Executing: make --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for i386-apple-darwin11.3.0 Checking for program /usr/local/opt/llvm/bin/make...not found Checking for program /opt/anaconda2/bin/make...not found Checking for program /opt/anaconda2/bin/make...not found Checking for program /Users/markadams/opt/miniconda2/bin/make...not found Checking for program /opt/miniconda2/bin/make...not found Checking for program /Users/markadams/opt/miniconda3/bin/make...not found Checking for program /usr/local/opt/texinfo/bin/make...not found Checking for program /Users/markadams/homebrew/sbin/make...not found Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /usr/local/opt/llvm/bin/make...not found Checking for program /opt/anaconda2/bin/make...not found Checking for program /opt/anaconda2/bin/make...not found Checking for program /Users/markadams/opt/miniconda2/bin/make...not found Checking for program /opt/miniconda2/bin/make...not found Checking for program /Users/markadams/opt/miniconda3/bin/make...not found Checking for program /usr/local/opt/texinfo/bin/make...not found Checking for program /Users/markadams/homebrew/sbin/make...not found Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" =============================================================================== ***** WARNING: You have a version of GNU make older than 4.0. It will work, but may not support all the parallel testing options. You can install the latest GNU make with your package manager, such as brew or macports, or use the --download-make option to get the latest GNU make ***** =============================================================================== ================================================================================ TEST setupGNUMake from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/make.py:150) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST configureMakeNP from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/make.py:197) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "MAKE_TEST_NP" to "4" Defined make macro "MAKE_LOAD" to "12.0" Defined make macro "NPMAX" to "8" child config.packages.make 0.087157 ================================================================================ TEST consistencyChecks from config.packages.thrust(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.thrust(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:931) TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:931) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001491 ================================================================================ TEST consistencyChecks from config.packages.cuda(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:931) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:931) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.000881 ================================================================================ TEST consistencyChecks from config.packages.OpenMPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:931) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:931) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000841 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST consistencyChecks from config.packages.MPICH(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:931) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:931) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.008869 ================================================================================ TEST consistencyChecks from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:935) TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:935) Checks run on the system and currently installed packages that need to be correct for the package now being configured ================================================================================ TEST checkDependencies from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:844) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:844) ================================================================================ TEST configureLibrary from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:653) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:653) ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] Contents: ['INSTALL_RECEIPT.json', 'bin', '.brew', 'CHANGES', 'include', 'README', 'lib', 'COPYRIGHT', 'share'] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in User specified root directory MPI: ['/usr/local/Cellar/mpich/3.3.2_1/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/Cellar/mpich/3.3.2_1/include'] Found header files [] in ['/usr/local/Cellar/mpich/3.3.2_1/include'] Checking for headers ['mpi.h'] in User specified root directory MPI: ['/usr/local/Cellar/mpich/3.3.2_1/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/usr/local/Cellar/mpich/3.3.2_1/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/Cellar/mpich/3.3.2_1/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in ['/usr/local/Cellar/mpich/3.3.2_1/include'] ================================================================================ TEST checkMPIDistro from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:514) TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:514) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:4:25: error: use of undeclared identifier 'I_MPI_VERSION' const char *mpich_ver = I_MPI_VERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'I_MPI_NUMVERSION' int mpich_ver = I_MPI_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MVAPICH2_NUMVERSION' int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30302300" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST configureMPI2 from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:289) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:289) Check for functions added to the interface in MPI-2 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:35: warning: if statement has empty body [-Wempty-body] int flag;if (MPI_Finalized(&flag)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:35: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:71: warning: if statement has empty body [-Wempty-body] if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:71: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:7:121: warning: if statement has empty body [-Wempty-body] if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:7:121: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:131: warning: if statement has empty body [-Wempty-body] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:131: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:63: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:63: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:49: warning: if statement has empty body [-Wempty-body] if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:49: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:102: warning: if statement has empty body [-Wempty-body] char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:102: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:334) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:334) Check for functions added to the interface in MPI-3 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:7:112: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:7:112: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:8:111: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:8:111: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:9:82: warning: if statement has empty body [-Wempty-body] if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:9:82: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:7:96: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:7:96: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:8:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:8:110: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:9:96: warning: if statement has empty body [-Wempty-body] if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:9:96: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:10:109: warning: if statement has empty body [-Wempty-body] if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:10:109: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:11:97: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:11:97: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:12:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:12:110: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:13:96: warning: if statement has empty body [-Wempty-body] if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:13:96: note: put the semicolon on a separate line to silence this warning 7 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:8:145: warning: if statement has empty body [-Wempty-body] if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:8:145: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:9:89: warning: if statement has empty body [-Wempty-body] if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:9:89: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:10:95: warning: if statement has empty body [-Wempty-body] if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:10:95: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:104: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:104: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:99: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.compilersFortran -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2_1/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:84: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_RGET" to "1" ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:176) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:176) Checking for location of mpiexec Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpiexec...found Checking for program /usr/local/Cellar/mpich/3.3.2_1/bin/mpiexec...found Defined make macro "MPIEXECEXECUTABLE" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpiexec" Running Executable with threads to time it out at 60 Executing: /usr/local/Cellar/mpich/3.3.2_1/bin/mpiexec -n 1 printenv stdout: GIT_PS1_SHOWDIRTYSTATE=1 PIP_DOWNLOAD_CACHE=/Users/markadams/.pip/cache TERM_PROGRAM=iTerm.app SHELL=/bin/bash TERM=xterm-256color CH_TIMER=FALSE TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ PETSC_ARCH=arch-macosx-gnu-g TERM_PROGRAM_VERSION=3.3.9 TERM_SESSION_ID=w0t0p0:7D9F402F-CBAC-468B-B855-087BDFA0F1D3 USER=markadams SVN_EDITOR=vi CH_TIMER_SAMPLE=60000 XP_LICENSE_INTERFACE=en0 SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.HkHsiTdkmh/Listeners __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 PATH=/usr/local/opt/llvm/bin:/opt/anaconda2/bin:/opt/anaconda2/bin:/Users/markadams/opt/miniconda2/bin:/opt/miniconda2/bin:/Users/markadams/opt/miniconda3/bin:/usr/local/opt/texinfo/bin:/Users/markadams/homebrew/sbin:/Users/markadams/homebrew/bin:/Users/markadams/homebrew/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/Library/Apple/usr/bin:/usr/local/bin: VERSIONER_PYTHON_VERSION=2.7 _=/usr/local/Cellar/mpich/3.3.2_1/bin/mpiexec DATAFILESPATH=/Users/markadams/matrices XGC_PLATFORM=osx PWD=/Users/markadams/Codes/petsc DBUS_LAUNCHD_SESSION_BUS_SOCKET=/private/tmp/com.apple.launchd.NFPPT8Kppn/unix_domain_listener LANG=en_US.UTF-8 ITERM_PROFILE=Default XPC_FLAGS=0x0 MACHINE=darwin XPC_SERVICE_NAME=0 COLORFGBG=0;15 HOME=/Users/markadams SHLVL=2 CH_OUTPUT_INTERVAL=1000 NETCDF_DIR=/Users/markadams/SFE/NETCDF_INSTALL LC_TERMINAL_VERSION=3.3.9 SLEPC_DIR=/Users/markadams/Codes/slepc ITERM_SESSION_ID=w0t0p0:7D9F402F-CBAC-468B-B855-087BDFA0F1D3 KOKKOS_DIR=/Users/markadams/Codes/spack/opt/spack/darwin-catalina-x86_64/apple-clang-11.0.3/kokkos-3.1.01-xpnbowi3ksdtn7dak2zjgarbwjryscbm LOGNAME=markadams CVS_RSH=ssh GIT_PS1_SHOWUPSTREAM=auto ARCHFLAGS=-arch x86_64 DISPLAY=/private/tmp/com.apple.launchd.QYSAsVq6IZ/org.macosforge.xquartz:0 LC_TERMINAL=iTerm2 H5PART_DIR=/Users/markadams/Codes/H5Part-1.6.6/build PETSC_DIR=/Users/markadams/Codes/petsc COLORTERM=truecolor HYDI_CONTROL_FD=10 GFORTRAN_UNBUFFERED_PRECONNECTED=y MPIR_CVAR_CH3_INTERFACE_HOSTNAME=MarksMac-302.local MPI_LOCALNRANKS=1 MPI_LOCALRANKID=0 PMI_RANK=0 PMI_FD=4 PMI_SIZE=1 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "MPIR_CVAR_CH3" Defined make macro "MPIEXEC" to "/usr/local/Cellar/mpich/3.3.2_1/bin/mpiexec" Checking for program /usr/local/opt/llvm/bin/ping...not found Checking for program /opt/anaconda2/bin/ping...not found Checking for program /opt/anaconda2/bin/ping...not found Checking for program /Users/markadams/opt/miniconda2/bin/ping...not found Checking for program /opt/miniconda2/bin/ping...not found Checking for program /Users/markadams/opt/miniconda3/bin/ping...not found Checking for program /usr/local/opt/texinfo/bin/ping...not found Checking for program /Users/markadams/homebrew/sbin/ping...not found Checking for program /Users/markadams/homebrew/bin/ping...not found Checking for program /Users/markadams/homebrew/bin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/bin/ping...not found Checking for program /bin/ping...not found Checking for program /usr/sbin/ping...not found Checking for program /sbin/ping...found Defined make macro "PING" to "ping" Checking for program /usr/local/opt/llvm/bin/hostname...not found Checking for program /opt/anaconda2/bin/hostname...not found Checking for program /opt/anaconda2/bin/hostname...not found Checking for program /Users/markadams/opt/miniconda2/bin/hostname...not found Checking for program /opt/miniconda2/bin/hostname...not found Checking for program /Users/markadams/opt/miniconda3/bin/hostname...not found Checking for program /usr/local/opt/texinfo/bin/hostname...not found Checking for program /Users/markadams/homebrew/sbin/hostname...not found Checking for program /Users/markadams/homebrew/bin/hostname...not found Checking for program /Users/markadams/homebrew/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...not found Checking for program /bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 10 Executing: hostname stdout: MarksMac-302.local Return code from hostname: 0 Testing ping on hostname Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable with threads to time it out at 10 Executing: ping -c 2 MarksMac-302.local Runaway process exceeded time limit of 10 **** Configure header /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DO_NOT_SWAP_CHILD_FOR_DEBUGGER 1 #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CLOSURE 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30302300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 1024 #define PETSC_MEMALIGN 16 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "lldb" #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_DATE_GIT "2020-09-17 17:25:18 +0000" #define PETSC_VERSION_GIT "v3.13.5-2892-g7f14b7aad2" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #endif **** C specific Configure header /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-Gq7ng1/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Exception: Your hostname will not work with MPI, perhaps you have VPN running whose network settings may not play well with MPI or your network is misconfigured ******************************************************************************* File "/Users/markadams/Codes/petsc/config/configure.py", line 452, in petsc_configure framework.configure(out = sys.stdout) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py", line 1251, in configure self.processChildren() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py", line 1240, in processChildren self.serialEvaluation(self.childGraph) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py", line 1215, in serialEvaluation child.configure() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 1115, in configure self.executeTest(self.configureLibrary) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/base.py", line 140, in executeTest ret = test(*args,**kargs) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py", line 672, in configureLibrary self.executeTest(self.configureMPIEXEC) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/base.py", line 140, in executeTest ret = test(*args,**kargs) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py", line 270, in configureMPIEXEC raise RuntimeError("Exception: "+errormessage) ================================================================================ Finishing configure run at Thu, 17 Sep 2020 21:50:25 -0400 ================================================================================