<div dir="ltr">It was built with --with-debugging=1<br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Aug 27, 2020 at 9:44 AM Barry Smith <<a href="mailto:bsmith@petsc.dev">bsmith@petsc.dev</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div style="overflow-wrap: break-word;"><div><br></div>Mark,<div><br></div><div> Did i tell you that this has to be built with the configure option --with-debugging=1 and won't be turned off with --with-debugging=0 ?</div><div><br></div><div> Barry</div><div><br><div><br><blockquote type="cite"><div>On Aug 27, 2020, at 8:10 AM, Mark Lohry <<a href="mailto:mlohry@gmail.com" target="_blank">mlohry@gmail.com</a>> wrote:</div><br><div><div dir="ltr"><div>Barry, no output from that patch i'm afraid:</div><div><br></div><div> 54 KSP Residual norm 3.215013886664e+03 <br> 55 KSP Residual norm 3.049105434513e+03 <br> 56 KSP Residual norm 2.859123916860e+03 <br>[929]PETSC ERROR: ------------------------------------------------------------------------<br>[929]PETSC ERROR: Caught signal number 7 BUS: Bus Error, possibly illegal memory access<br>[929]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>[929]PETSC ERROR: or see <a href="https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind" target="_blank">https://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind</a><br>[929]PETSC ERROR: or try <a href="http://valgrind.org/" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>[929]PETSC ERROR: likely location of problem given in stack below<br>[929]PETSC ERROR: --------------------- Stack Frames ------------------------------------<br>[929]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,<br>[929]PETSC ERROR: INSTEAD the line number of the start of the function<br>[929]PETSC ERROR: is given.<br>[929]PETSC ERROR: [929] BLASgemv line 1406 /home/mlohry/petsc/src/mat/impls/baij/seq/baijfact.c<br>[929]PETSC ERROR: [929] MatSolve_SeqBAIJ_N_NaturalOrdering line 1378 /home/mlohry/petsc/src/mat/impls/baij/seq/baijfact.c<br>[929]PETSC ERROR: [929] MatSolve line 3354 /home/mlohry/petsc/src/mat/interface/matrix.c<br>[929]PETSC ERROR: [929] PCApply_ILU line 201 /home/mlohry/petsc/src/ksp/pc/impls/factor/ilu/ilu.c<br>[929]PETSC ERROR: [929] PCApply line 426 /home/mlohry/petsc/src/ksp/pc/interface/precon.c<br>[929]PETSC ERROR: [929] KSP_PCApply line 279 /home/mlohry/petsc/include/petsc/private/kspimpl.h<br>[929]PETSC ERROR: [929] KSPSolve_PREONLY line 16 /home/mlohry/petsc/src/ksp/ksp/impls/preonly/preonly.c<br>[929]PETSC ERROR: [929] KSPSolve_Private line 590 /home/mlohry/petsc/src/ksp/ksp/interface/itfunc.c<br>[929]PETSC ERROR: [929] KSPSolve line 848 /home/mlohry/petsc/src/ksp/ksp/interface/itfunc.c<br>[929]PETSC ERROR: [929] PCApply_ASM line 441 /home/mlohry/petsc/src/ksp/pc/impls/asm/asm.c<br>[929]PETSC ERROR: [929] PCApply line 426 /home/mlohry/petsc/src/ksp/pc/interface/precon.c<br>[929]PETSC ERROR: [929] KSP_PCApply line 279 /home/mlohry/petsc/include/petsc/private/kspimpl.h<br>srun: Job step aborted: Waiting up to 47 seconds for job step to finish.<br>[929]PETSC ERROR: [929] KSPFGMRESCycle line 108 /home/mlohry/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c<br>[929]PETSC ERROR: [929] KSPSolve_FGMRES line 274 /home/mlohry/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c<br>[929]PETSC ERROR: [929] KSPSolve_Private line 590 /home/mlohry/petsc/src/ksp/ksp/interface/itfunc.c<br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Aug 24, 2020 at 6:47 PM Mark Lohry <<a href="mailto:mlohry@gmail.com" target="_blank">mlohry@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>I don't think I do. Running a much smaller case with the same models I get the attached report from valgrind --show-leak-kinds=all --leak-check=full --track-origins=yes. I only see some HDF5 stuff and OpenMPI that I think are false positives.</div><div><br></div><div>==1286950== Memcheck, a memory error detector<br>==1286950== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.<br>==1286950== Using Valgrind-3.15.0-608cb11914-20190413 and LibVEX; rerun with -h for copyright info<br>==1286950== Command: ./verification_testing --gtest_filter=DrivenCavity3D.Re100_BackwardEulerILU1_16x16N2_Quadrature1 --petsc_time_integrator=arkimex --petsc_arkimex_type=l2<br>==1286950== Parent PID: 1286932<br>==1286950== <br>--1286950-- <br>--1286950-- Valgrind options:<br>--1286950-- --show-leak-kinds=all<br>--1286950-- --leak-check=full<br>--1286950-- --track-origins=yes<br>--1286950-- --log-file=valgrind-out.txt<br>--1286950-- -v<br>--1286950-- Contents of /proc/version:<br>--1286950-- Linux version 5.4.0-29-generic (buildd@lgw01-amd64-035) (gcc version 9.3.0 (Ubuntu 9.3.0-10ubuntu2)) #33-Ubuntu SMP Wed Apr 29 14:32:27 UTC 2020<br>--1286950-- <br>--1286950-- Arch and hwcaps: AMD64, LittleEndian, amd64-cx16-rdtscp-sse3-ssse3-avx<br>--1286950-- Page sizes: currently 4096, max supported 4096<br>--1286950-- Valgrind library directory: /usr/lib/x86_64-linux-gnu/valgrind<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/verification_testing<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/<a href="http://ld-2.31.so/" target="_blank">ld-2.31.so</a><br>--1286950-- Considering /usr/lib/x86_64-linux-gnu/<a href="http://ld-2.31.so/" target="_blank">ld-2.31.so</a> ..<br>--1286950-- .. CRC mismatch (computed 387b17ea wanted d28cf5ef)<br>--1286950-- Considering /lib/x86_64-linux-gnu/<a href="http://ld-2.31.so/" target="_blank">ld-2.31.so</a> ..<br>--1286950-- .. CRC mismatch (computed 387b17ea wanted d28cf5ef)<br>--1286950-- Considering /usr/lib/debug/lib/x86_64-linux-gnu/<a href="http://ld-2.31.so/" target="_blank">ld-2.31.so</a> ..<br>--1286950-- .. CRC is valid<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/valgrind/memcheck-amd64-linux<br>--1286950-- object doesn't have a symbol table<br>--1286950-- object doesn't have a dynamic symbol table<br>--1286950-- Scheduler: using generic scheduler lock implementation.<br>--1286950-- Reading suppressions file: /usr/lib/x86_64-linux-gnu/valgrind/default.supp<br>==1286950== embedded gdbserver: reading from /tmp/vgdb-pipe-from-vgdb-to-1286950-by-mlohry-on-???<br>==1286950== embedded gdbserver: writing to /tmp/vgdb-pipe-to-vgdb-from-1286950-by-mlohry-on-???<br>==1286950== embedded gdbserver: shared mem /tmp/vgdb-pipe-shared-mem-vgdb-1286950-by-mlohry-on-???<br>==1286950== <br>==1286950== TO CONTROL THIS PROCESS USING vgdb (which you probably<br>==1286950== don't want to do, unless you know exactly what you're doing,<br>==1286950== or are doing some strange experiment):<br>==1286950== /usr/lib/x86_64-linux-gnu/valgrind/../../bin/vgdb --pid=1286950 ...command...<br>==1286950== <br>==1286950== TO DEBUG THIS PROCESS USING GDB: start GDB like this<br>==1286950== /path/to/gdb ./verification_testing<br>==1286950== and then give GDB the following command<br>==1286950== target remote | /usr/lib/x86_64-linux-gnu/valgrind/../../bin/vgdb --pid=1286950<br>==1286950== --pid is optional if only one valgrind process is running<br>==1286950== <br>--1286950-- REDIR: 0x4022d80 (ld-linux-x86-64.so.2:strlen) redirected to 0x580c9ce2 (???)<br>--1286950-- REDIR: 0x4022b50 (ld-linux-x86-64.so.2:index) redirected to 0x580c9cfc (???)<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_core-amd64-linux.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so<br>--1286950-- object doesn't have a symbol table<br>==1286950== WARNING: new redirection conflicts with existing -- ignoring it<br>--1286950-- old: 0x04022d80 (strlen ) R-> (0000.0) 0x580c9ce2 ???<br>--1286950-- new: 0x04022d80 (strlen ) R-> (2007.0) 0x0483f060 strlen<br>--1286950-- REDIR: 0x401f560 (ld-linux-x86-64.so.2:strcmp) redirected to 0x483ffd0 (strcmp)<br>--1286950-- REDIR: 0x40232e0 (ld-linux-x86-64.so.2:mempcpy) redirected to 0x4843a20 (mempcpy)<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/initialization/libinitialization.so<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/governing_equations/libgoverning_equations.so<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/time_stepping/libtime_stepping.so<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/governing_equations/libboundary_conditions.so<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/governing_equations/libsolution_monitors.so<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/governing_equations/libfluxtypes.so<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/algebraic_solvers/libalgebraic_solvers.so<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/program_options/libprogram_options.so<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/boost_install/lib/libboost_filesystem.so.1.73.0<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so.40.20.1<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/<a href="http://libpthread-2.31.so/" target="_blank">libpthread-2.31.so</a><br>--1286950-- Considering /usr/lib/debug/.build-id/77/5cbbfff814456660786780b0b3b40096b4c05e.debug ..<br>--1286950-- .. build-id is valid<br>--1286948-- Reading syms from /home/mlohry/dev/cmake-build/external/petsc/arch-linux2-c-opt/lib/libpetsc.so.3.13.3<br>--1286937-- Reading syms from /home/mlohry/dev/cmake-build/parallel/libparallel.so<br>--1286937-- Reading syms from /home/mlohry/dev/cmake-build/logger/liblogger.so<br>--1286937-- Reading syms from /home/mlohry/dev/cmake-build/spatial_discretization/libdiscretization.so<br>--1286945-- Reading syms from /home/mlohry/dev/cmake-build/utils/libutils.so<br>--1286944-- Reading syms from /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.28<br>--1286938-- object doesn't have a symbol table<br>--1286949-- Reading syms from /usr/lib/x86_64-linux-gnu/<a href="http://libm-2.31.so/" target="_blank">libm-2.31.so</a><br>--1286949-- Considering /usr/lib/x86_64-linux-gnu/<a href="http://libm-2.31.so/" target="_blank">libm-2.31.so</a> ..<br>--1286947-- .. CRC mismatch (computed 327d785f wanted 751f5509)<br>--1286947-- Considering /lib/x86_64-linux-gnu/<a href="http://libm-2.31.so/" target="_blank">libm-2.31.so</a> ..<br>--1286938-- .. CRC mismatch (computed 327d785f wanted 751f5509)<br>--1286937-- Considering /usr/lib/debug/lib/x86_64-linux-gnu/<a href="http://libm-2.31.so/" target="_blank">libm-2.31.so</a> ..<br>--1286950-- .. CRC is valid<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/libgcc_s.so.1<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/<a href="http://libc-2.31.so/" target="_blank">libc-2.31.so</a><br>--1286950-- Considering /usr/lib/x86_64-linux-gnu/<a href="http://libc-2.31.so/" target="_blank">libc-2.31.so</a> ..<br>--1286951-- .. CRC mismatch (computed a6f43087 wanted 6555436e)<br>--1286951-- Considering /lib/x86_64-linux-gnu/<a href="http://libc-2.31.so/" target="_blank">libc-2.31.so</a> ..<br>--1286947-- .. CRC mismatch (computed a6f43087 wanted 6555436e)<br>--1286947-- Considering /usr/lib/debug/lib/x86_64-linux-gnu/<a href="http://libc-2.31.so/" target="_blank">libc-2.31.so</a> ..<br>--1286950-- .. CRC is valid<br>--1286940-- Reading syms from /home/mlohry/dev/cmake-build/file_io/libfileio.so<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/boost_install/lib/libboost_program_options.so.1.73.0<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/boost_install/lib/libboost_serialization.so.1.73.0<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/libhwloc.so.15.1.0<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /home/mlohry/dev/cmake-build/external/petsc/arch-linux2-c-opt/lib/libsuperlu_dist.so.6.3.0<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0<br>--1286950-- object doesn't have a symbol table<br>--1286937-- Reading syms from /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0<br>--1286937-- object doesn't have a symbol table<br>--1286947-- Reading syms from /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0<br>--1286939-- object doesn't have a symbol table<br>--1286947-- Reading syms from /usr/lib/x86_64-linux-gnu/<a href="http://libdl-2.31.so/" target="_blank">libdl-2.31.so</a><br>--1286947-- Considering /usr/lib/x86_64-linux-gnu/<a href="http://libdl-2.31.so/" target="_blank">libdl-2.31.so</a> ..<br>--1286947-- .. CRC mismatch (computed 4fd191ca wanted df8dd39a)<br>--1286947-- Considering /lib/x86_64-linux-gnu/<a href="http://libdl-2.31.so/" target="_blank">libdl-2.31.so</a> ..<br>--1286947-- .. CRC mismatch (computed 4fd191ca wanted df8dd39a)<br>--1286947-- Considering /usr/lib/debug/lib/x86_64-linux-gnu/<a href="http://libdl-2.31.so/" target="_blank">libdl-2.31.so</a> ..<br>--1286947-- .. CRC is valid<br>--1286937-- Reading syms from /home/mlohry/dev/cmake-build/external/petsc/arch-linux2-c-opt/lib/libmetis.so<br>--1286937-- Reading syms from /home/mlohry/dev/cmake-build/boost_install/lib/libboost_log.so.1.73.0<br>--1286942-- Reading syms from /home/mlohry/dev/cmake-build/boost_install/lib/libboost_log_setup.so.1.73.0<br>--1286942-- Reading syms from /home/mlohry/dev/cmake-build/boost_install/lib/libboost_thread.so.1.73.0<br>--1286942-- Reading syms from /home/mlohry/dev/cmake-build/boost_install/lib/libboost_regex.so.1.73.0<br>--1286949-- Reading syms from /home/mlohry/dev/cmake-build/basis_functions/libbasis_functions.so<br>--1286944-- Reading syms from /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0<br>--1286944-- object doesn't have a symbol table<br>--1286951-- Reading syms from /home/mlohry/dev/cmake-build/external_install/lib/libcgns.so<br>--1286951-- object doesn't have a symbol table<br>--1286943-- Reading syms from /home/mlohry/dev/cmake-build/external_install/lib/libhdf5.so.103.1.0<br>--1286951-- Reading syms from /home/mlohry/dev/cmake-build/external/tinyxml2-build/libtinyxml2.so.6.1.0<br>--1286944-- Reading syms from /home/mlohry/dev/cmake-build/boost_install/lib/libboost_iostreams.so.1.73.0<br>--1286944-- Reading syms from /usr/lib/x86_64-linux-gnu/libz.so.1.2.11<br>--1286944-- object doesn't have a symbol table<br>--1286951-- Reading syms from /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0<br>--1286951-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/<a href="http://libutil-2.31.so/" target="_blank">libutil-2.31.so</a><br>--1286946-- Considering /usr/lib/x86_64-linux-gnu/<a href="http://libutil-2.31.so/" target="_blank">libutil-2.31.so</a> ..<br>--1286946-- .. CRC mismatch (computed 4639aba5 wanted ceb246b4)<br>--1286946-- Considering /lib/x86_64-linux-gnu/<a href="http://libutil-2.31.so/" target="_blank">libutil-2.31.so</a> ..<br>--1286946-- .. CRC mismatch (computed 4639aba5 wanted ceb246b4)<br>--1286948-- Considering /usr/lib/debug/lib/x86_64-linux-gnu/<a href="http://libutil-2.31.so/" target="_blank">libutil-2.31.so</a> ..<br>--1286939-- .. CRC is valid<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libevent_pthreads-2.1.so.7.0.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libudev.so.1.6.17<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/libltdl.so.7.3.1<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/libgfortran.so.5.0.0<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/<a href="http://librt-2.31.so/" target="_blank">librt-2.31.so</a><br>--1286950-- Considering /usr/lib/x86_64-linux-gnu/<a href="http://librt-2.31.so/" target="_blank">librt-2.31.so</a> ..<br>--1286950-- .. CRC mismatch (computed a9acc0ce wanted cb4905a3)<br>--1286950-- Considering /lib/x86_64-linux-gnu/<a href="http://librt-2.31.so/" target="_blank">librt-2.31.so</a> ..<br>--1286950-- .. CRC mismatch (computed a9acc0ce wanted cb4905a3)<br>--1286950-- Considering /usr/lib/debug/lib/x86_64-linux-gnu/<a href="http://librt-2.31.so/" target="_blank">librt-2.31.so</a> ..<br>--1286950-- .. CRC is valid<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/libquadmath.so.0.0.0<br>--1286950-- object doesn't have a symbol table<br>--1286945-- Reading syms from /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0<br>--1286945-- Considering /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0 ..<br>--1286945-- .. CRC mismatch (computed 7de9b6ad wanted e8a17129)<br>--1286945-- Considering /lib/x86_64-linux-gnu/libXau.so.6.0.0 ..<br>--1286945-- .. CRC mismatch (computed 7de9b6ad wanted e8a17129)<br>--1286945-- object doesn't have a symbol table<br>--1286945-- Reading syms from /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0<br>--1286942-- object doesn't have a symbol table<br>--1286942-- Reading syms from /usr/lib/x86_64-linux-gnu/libbsd.so.0.10.0<br>--1286942-- object doesn't have a symbol table<br>--1286950-- REDIR: 0x6516600 (libc.so.6:memmove) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6515900 (libc.so.6:strncpy) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6516930 (libc.so.6:strcasecmp) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6515220 (libc.so.6:strcat) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6515960 (libc.so.6:rindex) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6517dd0 (libc.so.6:rawmemchr) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6532e60 (libc.so.6:wmemchr) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65329a0 (libc.so.6:wcscmp) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6516760 (libc.so.6:mempcpy) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6516590 (libc.so.6:bcmp) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6515890 (libc.so.6:strncmp) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65152d0 (libc.so.6:strcmp) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65166c0 (libc.so.6:memset) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6532960 (libc.so.6:wcschr) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65157f0 (libc.so.6:strnlen) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65153b0 (libc.so.6:strcspn) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6516980 (libc.so.6:strncasecmp) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6515350 (libc.so.6:strcpy) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6516ad0 (libc.so.6:memcpy@@GLIBC_2.14) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65340d0 (libc.so.6:wcsnlen) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65329e0 (libc.so.6:wcscpy) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65159a0 (libc.so.6:strpbrk) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6515280 (libc.so.6:index) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65157b0 (libc.so.6:strlen) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x651ed20 (libc.so.6:memrchr) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65169d0 (libc.so.6:strcasecmp_l) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6516550 (libc.so.6:memchr) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6532ab0 (libc.so.6:wcslen) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6515c60 (libc.so.6:strspn) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65168d0 (libc.so.6:stpncpy) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6516870 (libc.so.6:stpcpy) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6517e10 (libc.so.6:strchrnul) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6516a20 (libc.so.6:strncasecmp_l) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x6516470 (libc.so.6:strstr) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65a3750 (libc.so.6:__memcpy_chk) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286938-- REDIR: 0x6527a30 (libc.so.6:__strrchr_sse2) redirected to 0x483ea70 (__strrchr_sse2)<br>--1286938-- REDIR: 0x6511c90 (libc.so.6:calloc) redirected to 0x483dce0 (calloc)<br>--1286938-- REDIR: 0x6510260 (libc.so.6:malloc) redirected to 0x483b780 (malloc)<br>--1286938-- REDIR: 0x6531c40 (libc.so.6:memcpy@GLIBC_2.2.5) redirected to 0x4840100 (memcpy@GLIBC_2.2.5)<br>--1286938-- REDIR: 0x6527d30 (libc.so.6:__strlen_sse2) redirected to 0x483efa0 (__strlen_sse2)<br>--1286938-- REDIR: 0x65f4ac0 (libc.so.6:__strncmp_sse42) redirected to 0x483f7c0 (__strncmp_sse42)<br>--1286938-- REDIR: 0x6510850 (libc.so.6:free) redirected to 0x483c9d0 (free)<br>--1286938-- REDIR: 0x6532070 (libc.so.6:__memset_sse2_unaligned) redirected to 0x48428e0 (memset)<br>--1286938-- REDIR: 0x6603350 (libc.so.6:__memcmp_sse4_1) redirected to 0x4842150 (__memcmp_sse4_1)<br>--1286938-- REDIR: 0x6520520 (libc.so.6:__strcmp_sse2_unaligned) redirected to 0x483fed0 (strcmp)<br>--1286938-- REDIR: 0x61d0c10 (libstdc++.so.6:operator new(unsigned long)) redirected to 0x483bdf0 (operator new(unsigned long))<br>--1286938-- REDIR: 0x61cee60 (libstdc++.so.6:operator delete(void*)) redirected to 0x483cf50 (operator delete(void*))<br>--1286938-- REDIR: 0x61d0c70 (libstdc++.so.6:operator new[](unsigned long)) redirected to 0x483c510 (operator new[](unsigned long))<br>--1286938-- REDIR: 0x61cee90 (libstdc++.so.6:operator delete[](void*)) redirected to 0x483d6e0 (operator delete[](void*))<br>--1286938-- REDIR: 0x65275f0 (libc.so.6:__strchr_sse2) redirected to 0x483eb90 (__strchr_sse2)<br>--1286950-- REDIR: 0x6511000 (libc.so.6:realloc) redirected to 0x483df30 (realloc)<br>--1286950-- REDIR: 0x6527820 (libc.so.6:__strchrnul_sse2) redirected to 0x4843540 (strchrnul)<br>--1286950-- REDIR: 0x6531560 (libc.so.6:__strstr_sse2_unaligned) redirected to 0x4843c20 (strstr)<br>--1286950-- REDIR: 0x6531c20 (libc.so.6:__mempcpy_sse2_unaligned) redirected to 0x4843660 (mempcpy)<br>--1286950-- REDIR: 0x652d2a0 (libc.so.6:__strncpy_sse2_unaligned) redirected to 0x483f560 (__strncpy_sse2_unaligned)<br>--1286950-- REDIR: 0x6515830 (libc.so.6:strncat) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>--1286950-- REDIR: 0x65305b0 (libc.so.6:__strncat_sse2_unaligned) redirected to 0x483ede0 (strncat)<br>--1286950-- REDIR: 0x6516120 (libc.so.6:__GI_strstr) redirected to 0x4843ca0 (__strstr_sse2)<br>--1286950-- REDIR: 0x6522360 (libc.so.6:__rawmemchr_sse2) redirected to 0x4843580 (rawmemchr)<br>--1286950-- REDIR: 0x65faea0 (libc.so.6:__strcasecmp_avx) redirected to 0x483f830 (strcasecmp)<br>--1286950-- REDIR: 0x65fc520 (libc.so.6:__strncasecmp_avx) redirected to 0x483f910 (strncasecmp)<br>--1286950-- REDIR: 0x65f98a0 (libc.so.6:__strspn_sse42) redirected to 0x4843ef0 (strspn)<br>--1286950-- REDIR: 0x65f9620 (libc.so.6:__strcspn_sse42) redirected to 0x4843e10 (strcspn)<br>--1286948-- REDIR: 0x6522030 (libc.so.6:__memchr_sse2) redirected to 0x4840050 (memchr)<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_shmem_mmap.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_shmem_posix.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_shmem_sysv.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Discarding syms at 0x4a96240-0x4a96d47 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_shmem_posix.so (have_dinfo 1)<br>--1286948-- Discarding syms at 0x4a9b1c0-0x4a9b937 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_shmem_sysv.so (have_dinfo 1)<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_reachable_weighted.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_reachable_netlink.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/libnl-3.so.200.26.0<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Discarding syms at 0x4a96120-0x4a966b0 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_reachable_weighted.so (have_dinfo 1)<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_schizo_flux.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_schizo_orte.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_schizo_ompi.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_schizo_slurm.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- REDIR: 0x64bc670 (libc.so.6:setenv) redirected to 0x4844480 (setenv)<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_pmi.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_flux.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/libpmix.so.2.2.25<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Discarding syms at 0x8d053e0-0x8d07391 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_flux.so (have_dinfo 1)<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_bfrops_v21.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_bfrops_v20.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_bfrops_v3.so<br>--1286948-- object doesn't have a symbol table<br>--1286948-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_bfrops_v12.so<br>--1286948-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_ptl_usock.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_ptl_tcp.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_psec_native.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_psec_none.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Discarding syms at 0x8d04180-0x8d045b0 in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_psec_none.so (have_dinfo 1)<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_gds_ds21.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/libmca_common_dstore.so.1.0.2<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_gds_hash.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_gds_ds12.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_pshmem_mmap.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_preg_native.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_plog_stdfd.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_plog_syslog.so<br>--1286950-- object doesn't have a symbol table<br>--1286950-- Reading syms from /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_plog_default.so<br>--1286950-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_state_tool.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_state_app.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_state_orted.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_state_hnp.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_state_novm.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Discarding syms at 0x9ebf0a0-0x9ebf490 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_state_tool.so (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9eca300-0x9ecbee8 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_state_orted.so (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9ed1220-0x9ed24e7 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_state_hnp.so (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9ed8240-0x9ed8c88 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_state_novm.so (have_dinfo 1)<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_errmgr_default_tool.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_errmgr_default_app.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_errmgr_default_hnp.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_errmgr_default_orted.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Discarding syms at 0x9ebf0e0-0x9ebf417 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_errmgr_default_tool.so (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9ecf320-0x9ed1239 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_errmgr_default_hnp.so (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9ed73a0-0x9ed9ccc in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_errmgr_default_orted.so (have_dinfo 1)<br>--1286936-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_allocator_basic.so<br>--1286936-- object doesn't have a symbol table<br>--1286936-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_allocator_bucket.so<br>--1286936-- object doesn't have a symbol table<br>--1286936-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_rcache_grdma.so<br>--1286936-- object doesn't have a symbol table<br>--1286936-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_mpool_hugepage.so<br>--1286936-- object doesn't have a symbol table<br>--1286936-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_bml_r2.so<br>--1286936-- object doesn't have a symbol table<br>--1286936-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_tcp.so<br>--1286936-- object doesn't have a symbol table<br>--1286936-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_sm.so<br>--1286936-- object doesn't have a symbol table<br>--1286936-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_vader.so<br>--1286936-- object doesn't have a symbol table<br>--1286936-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_openib.so<br>--1286936-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libibverbs.so.1.8.28.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/libmca_common_verbs.so.40.20.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libnl-route-3.so.200.26.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_self.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- REDIR: 0x652cc70 (libc.so.6:__strcpy_sse2_unaligned) redirected to 0x483f090 (strcpy)<br>--1286946-- REDIR: 0x65a3810 (libc.so.6:__memmove_chk) redirected to 0x48331d0 (_vgnU_ifunc_wrapper)<br>==1286946== WARNING: new redirection conflicts with existing -- ignoring it<br>--1286946-- old: 0x06531c30 (__memcpy_chk_sse2_un) R-> (2030.0) 0x04843b10 __memcpy_chk<br>--1286946-- new: 0x06531c30 (__memcpy_chk_sse2_un) R-> (2024.0) 0x048434d0 __memmove_chk<br>--1286946-- REDIR: 0x6531c30 (libc.so.6:__memcpy_chk_sse2_unaligned) redirected to 0x4843b10 (__memcpy_chk)<br>--1286946-- REDIR: 0x65129b0 (libc.so.6:posix_memalign) redirected to 0x483e1e0 (posix_memalign)<br>--1286946-- Discarding syms at 0x9f15280-0x9f32932 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_openib.so (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9f7c4c0-0x9f7ded8 in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmca_common_verbs.so.40.20.0 (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9f620c0-0x9f71483 in /usr/lib/x86_64-linux-gnu/libibverbs.so.1.8.28.0 (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9f9ba10-0x9fd22ee in /usr/lib/x86_64-linux-gnu/libnl-route-3.so.200.26.0 (have_dinfo 1)<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pml_cm.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pml_ob1.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pml_monitoring.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/libmca_common_monitoring.so.50.10.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_vprotocol_pessimist.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Discarding syms at 0x9f4d400-0x9f50c19 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_vprotocol_pessimist.so (have_dinfo 1)<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_mtl_psm.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/libpsm1/libpsm_infinipath.so.1.16<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libinfinipath.so.4.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libuuid.so.1.3.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_mtl_ofi.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libfabric.so.1.9.15<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/librdmacm.so.1.2.28.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libibverbs.so.1.8.28.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libpsm2.so.2.1<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libnl-route-3.so.200.26.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/libnuma.so.1.0.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- REDIR: 0x6517140 (libc.so.6:strcasestr) redirected to 0x4843f80 (strcasestr)<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_mtl_psm2.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Discarding syms at 0x9f4d5c0-0x9f4f5a1 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_mtl_psm.so (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9fee680-0x9ff096c in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_mtl_psm2.so (have_dinfo 1)<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_inter.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_basic.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_sm.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/libmca_common_sm.so.40.20.0<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_self.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_sync.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_monitoring.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_libnbc.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_tuned.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_osc_sm.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_osc_pt2pt.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_osc_rdma.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_osc_monitoring.so<br>--1286946-- object doesn't have a symbol table<br>--1286946-- Discarding syms at 0x9f724a0-0x9f787b5 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_mtl_ofi.so (have_dinfo 1)<br>--1286946-- Discarding syms at 0xa827f80-0xa8e14c4 in /usr/lib/x86_64-linux-gnu/libfabric.so.1.9.15 (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9f94830-0x9fbafce in /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9fe5580-0x9fe8f71 in /usr/lib/x86_64-linux-gnu/libuuid.so.1.3.0 (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9f56420-0x9f5cec0 in /usr/lib/x86_64-linux-gnu/libinfinipath.so.4.0 (have_dinfo 1)<br>--1286946-- Discarding syms at 0xa929f10-0xa93d5fc in /usr/lib/x86_64-linux-gnu/librdmacm.so.1.2.28.0 (have_dinfo 1)<br>--1286946-- Discarding syms at 0xa94b0c0-0xa95a483 in /usr/lib/x86_64-linux-gnu/libibverbs.so.1.8.28.0 (have_dinfo 1)<br>--1286946-- Discarding syms at 0xa968860-0xa9adf12 in /usr/lib/x86_64-linux-gnu/libpsm2.so.2.1 (have_dinfo 1)<br>--1286946-- Discarding syms at 0xa9e7a10-0xaa1e2ee in /usr/lib/x86_64-linux-gnu/libnl-route-3.so.200.26.0 (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9f80410-0x9f84e27 in /usr/lib/x86_64-linux-gnu/libnuma.so.1.0.0 (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9f103e0-0x9f15fd5 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pml_cm.so (have_dinfo 1)<br>--1286946-- Discarding syms at 0x9f471e0-0x9f47ce0 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pml_monitoring.so (have_dinfo 1)<br>==1286946== Thread 3:<br>==1286946== Syscall param writev(vector[...]) points to uninitialised byte(s)<br>==1286946== at 0x658A48D: __writev (writev.c:26)<br>==1286946== by 0x658A48D: writev (writev.c:24)<br>==1286946== by 0x8DF9B4C: pmix_ptl_base_send_handler (in /usr/lib/x86_64-linux-gnu/pmix/lib/libpmix.so.2.2.25)<br>==1286946== by 0x7CC413E: ??? (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286946== by 0x7CC487E: event_base_loop (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286946== by 0x8DBDD55: ??? (in /usr/lib/x86_64-linux-gnu/pmix/lib/libpmix.so.2.2.25)<br>==1286946== by 0x4BF7608: start_thread (pthread_create.c:477)<br>==1286946== by 0x6595102: clone (clone.S:95)<br>==1286946== Address 0xa28fdcf is 127 bytes inside a block of size 5,120 alloc'd<br>==1286946== at 0x483DFAF: realloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286946== by 0x8DE155A: pmix_bfrop_buffer_extend (in /usr/lib/x86_64-linux-gnu/pmix/lib/libpmix.so.2.2.25)<br>==1286946== by 0x8DE3F4A: pmix_bfrops_base_pack_byte (in /usr/lib/x86_64-linux-gnu/pmix/lib/libpmix.so.2.2.25)<br>==1286946== by 0x8DE4900: pmix_bfrops_base_pack_buf (in /usr/lib/x86_64-linux-gnu/pmix/lib/libpmix.so.2.2.25)<br>==1286946== by 0x8DE4175: pmix_bfrops_base_pack (in /usr/lib/x86_64-linux-gnu/pmix/lib/libpmix.so.2.2.25)<br>==1286946== by 0x8D7CF91: ??? (in /usr/lib/x86_64-linux-gnu/pmix/lib/libpmix.so.2.2.25)<br>==1286946== by 0x7CC3FDD: ??? (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286946== by 0x7CC487E: event_base_loop (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286946== by 0x8DBDD55: ??? (in /usr/lib/x86_64-linux-gnu/pmix/lib/libpmix.so.2.2.25)<br>==1286946== by 0x4BF7608: start_thread (pthread_create.c:477)<br>==1286946== by 0x6595102: clone (clone.S:95)<br>==1286946== Uninitialised value was created by a stack allocation<br>==1286946== at 0x9F048D6: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_vader.so)<br>==1286946== <br>--1286944-- Discarding syms at 0xaa4d220-0xaa5796a in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmp--1286945-- Discarding syms at 0xaa4d220---1286948-- Discarding syms at 0xaae1100-0xaae7d70 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmp--1286945-- Discarding syms at 0xaae1100-0xaae7d70 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_osc_monitoring.so (have_dinfo 1)<br>--1286945-- Discarding syms at 0x9f69420-0x9f--1286938-- REDIR: 0x61cee70 (libstdc++.so.6:operator delete(void*, unsigned long)) redirected to --1286937-- REDIR: 0x61cee70 (libstdc++.so.6:opera--1286946-- REDIR: 0x652e970 (libc.so.6:__stpncpy_sse2_unaligned) redirected to 0x48427e0 (stpncpy)<br>--1286942-- REDIR: 0x6527ed0 (libc.so.6:__strnlen_sse2) redirected to 0x483eee0 (strnlen)<br>--1286944-- REDIR: 0x652fcc0 (libc.so.6:__strcat_sse2_unaligned) redirected to 0x483ec20 (strcat)<br>--1286951-- REDIR: 0x65113d0 (libc.so.6:memalign) redirected to 0x483e2a0 (memalign)<br>--1286951-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_romio321.so<br>--1286951-- object doesn't have a symbol table<br>--1286951-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_ompio.so<br>--1286951-- object doesn't have a symbol table<br>--1286941-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/libmca_common_ompio.so.41.19.3<br>--1286941-- object doesn't have a symbol table<br>--1286951-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fs_ufs.so<br>--1286951-- object doesn't have a symbol table<br>--1286939-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fcoll_two_phase.so<br>--1286939-- object doesn't have a symbol table<br>--1286939-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fcoll_individual.so<br>--1286939-- object doesn't have a symbol table<br>--1286939-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fcoll_dynamic.so<br>--1286939-- object doesn't have a symbol table<br>--1286939-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fcoll_dynamic_gen2.so<br>--1286939-- object doesn't have a symbol table<br>--1286939-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fcoll_vulcan.so<br>--1286939-- object doesn't have a symbol table<br>--1286939-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fbtl_posix.so<br>--1286939-- object doesn't have a symbol table<br>--1286943-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_sharedfp_sm.so<br>--1286943-- object doesn't have a symbol table<br>--1286943-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_sharedfp_individual.so<br>--1286943-- object doesn't have a symbol table<br>--1286943-- Reading syms from /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_sharedfp_lockedfile.so<br>--1286943-- object doesn't have a symbol table<br>--1286938-- REDIR: 0x65a3b00 (libc.so.6:__strcpy_chk) redirected to 0x48435c0 (__strcpy_chk)<br>--1286939-- Discarding syms at 0x9f1d660-0x9f371d6 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pml_ob1.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9f5afa0-0x9f8f8b6 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_romio321.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9fa0640-0x9fa42d9 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_io_ompio.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9f4c160-0x9f4dc58 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_inter.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xa7fc270-0xa804f00 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_basic.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9fee3a0-0x9ff134e in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_sm.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xa80a240-0xa80aa8d in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmca_common_sm.so.40.20.0 (have_dinfo 1)<br>--1286939-- Discarding syms at 0xa80f0e0-0xa80f8bb in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_self.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xaa460c0-0xaa47947 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_sync.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xaa613e0-0xaa7730f in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_libnbc.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xaa849c0-0xaa8a845 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_coll_tuned.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9ee1320-0x9ee3567 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_bml_r2.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9eebc40-0x9ef4ad7 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_tcp.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9f02600-0x9f08cd8 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_vader.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9f40200-0x9f4126e in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_self.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9eda4e0-0x9edb4c5 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_mpool_hugepage.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9ed32c0-0x9ed4afe in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_rcache_grdma.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9ebf160-0x9ebfe95 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_allocator_basic.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9ece140-0x9ecebed in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_allocator_bucket.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9ec92a0-0x9ec9aa2 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_errmgr_default_app.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8eae0e0-0x8eae4a7 in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_plog_stdfd.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8eb3220-0x8eb3c27 in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_plog_syslog.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8eb80e0-0x8eb90b7 in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_plog_default.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8ea6380-0x8ea97b3 in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_preg_native.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8e5a740-0x8e5f859 in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_ptl_usock.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8e67be0-0x8e743f0 in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_ptl_tcp.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x84da200-0x84daa5d in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_psec_native.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8d322b0-0x8d34bfc in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_bfrops_v21.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8e29480-0x8e3b70a in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_bfrops_v20.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8d3c2b0-0x8d3ed5c in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_bfrops_v3.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8e45340-0x8e502da in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_bfrops_v12.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8e901a0-0x8e908a7 in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_pshmem_mmap.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8d05520-0x8d06783 in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_gds_ds21.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8e7b460-0x8e8aaa4 in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_gds_hash.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8d44520-0x8d4556a in /usr/lib/x86_64-linux-gnu/pmix/lib/pmix/mca_gds_ds12.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8e97600-0x8ea0fa1 in /usr/lib/x86_64-linux-gnu/pmix/lib/libmca_common_dstore.so.1.0.2 (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8d109c0-0x8d27dcf in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x8d5b280-0x8dfdffb in /usr/lib/x86_64-linux-gnu/pmix/lib/libpmix.so.2.2.25 (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9ec40a0-0x9ec4490 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_state_app.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x84d2580-0x84d518f in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_ess_pmi.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x4a96120-0x4a9644f in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_schizo_flux.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x4aa0100-0x4aa03e7 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_schizo_orte.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x84c74a0-0x84c901f in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_schizo_ompi.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x4aa5260-0x4aa58e9 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_schizo_slurm.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x4a9b420-0x4a9bcdf in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_reachable_netlink.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x84e7460-0x84f52ca in /usr/lib/x86_64-linux-gnu/libnl-3.so.200.26.0 (have_dinfo 1)<br>--1286939-- Discarding syms at 0x4a90360-0x4a91107 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_shmem_mmap.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9f46220-0x9f474cc in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fbtl_posix.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9f0f180-0x9f0f78d in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fs_ufs.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xaa94540-0xaa96a4a in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_osc_sm.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xaa9f6c0-0xaab44d0 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_osc_pt2pt.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xaabe820-0xaad8ee0 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_osc_rdma.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9efc080-0x9efc1e1 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_btl_sm.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9fab2a0-0x9fb1341 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fcoll_two_phase.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9f140c0-0x9f14299 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fcoll_individual.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9fb72a0-0x9fbb791 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fcoll_dynamic.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9fd52a0-0x9fda794 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fcoll_dynamic_gen2.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9fe02e0-0x9fe59a5 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_fcoll_vulcan.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xa815460-0xa8177ab in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_sharedfp_sm.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xa81e260-0xa82033d in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_sharedfp_individual.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0xa8273e0-0xa8297d8 in /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_sharedfp_lockedfile.so (have_dinfo 1)<br>--1286939-- Discarding syms at 0x9fc85e0-0x9fce8ef in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmca_common_ompio.so.41.19.3 (have_dinfo 1)<br>==1286939== <br>==1286939== HEAP SUMMARY:<br>==1286939== in use at exit: 74,054 bytes in 223 blocks<br>==1286939== total heap usage: 22,405,782 allocs, 22,405,559 frees, 34,062,479,959 bytes allocated<br>==1286939== <br>==1286939== Searching for pointers to 223 not-freed blocks<br>==1286939== Checked 3,415,912 bytes<br>==1286939== <br>==1286939== Thread 1:<br>==1286939== 1 bytes in 1 blocks are definitely lost in loss record 1 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x651550E: strdup (strdup.c:42)<br>==1286939== by 0x9F6A4B6: ???<br>==1286939== by 0x9F47373: ???<br>==1286939== by 0x68E3B9B: mca_base_framework_components_register (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3F35: mca_base_framework_register (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3F93: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x4BA1734: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== <br>==1286939== 8 bytes in 1 blocks are still reachable in loss record 2 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x764724C: ??? (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)<br>==1286939== by 0x7657B9A: ??? (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)<br>==1286939== by 0x7645679: ??? (in /usr/lib/x86_64-linux-gnu/libgomp.so.1.0.0)<br>==1286939== by 0x4011B89: call_init.part.0 (dl-init.c:72)<br>==1286939== by 0x4011C90: call_init (dl-init.c:30)<br>==1286939== by 0x4011C90: _dl_init (dl-init.c:119)<br>==1286939== by 0x4001139: ??? (in /usr/lib/x86_64-linux-gnu/<a href="http://ld-2.31.so/" target="_blank">ld-2.31.so</a>)<br>==1286939== by 0x3: ???<br>==1286939== by 0x1FFEFFF926: ???<br>==1286939== by 0x1FFEFFF93D: ???<br>==1286939== by 0x1FFEFFF987: ???<br>==1286939== by 0x1FFEFFF9A7: ???<br>==1286939== <br>==1286939== 8 bytes in 1 blocks are definitely lost in loss record 3 of 44<br>==1286939== at 0x483DD99: calloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x9F69B6F: ???<br>==1286939== by 0x9F1CDED: ???<br>==1286939== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9EE3527: ???<br>==1286939== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== by 0x15710D: main (testing_main.cpp:8)<br>==1286939== <br>==1286939== 13 bytes in 2 blocks are still reachable in loss record 4 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x651550E: strdup (strdup.c:42)<br>==1286939== by 0x7CC3657: event_config_avoid_method (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x68FEB5A: opal_event_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68FE8CA: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E4008: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68B8BCF: opal_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x6860120: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== <br>==1286939== 15 bytes in 1 blocks are indirectly lost in loss record 5 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x651550E: strdup (strdup.c:42)<br>==1286939== by 0x9EDB189: ???<br>==1286939== by 0x68D98FC: mca_base_framework_components_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x6907C25: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E4008: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x4BA16D5: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== by 0x15710D: main (testing_main.cpp:8)<br>==1286939== <br>==1286939== 15 bytes in 1 blocks are definitely lost in loss record 6 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x651550E: strdup (strdup.c:42)<br>==1286939== by 0x9F5655C: ???<br>==1286939== by 0x4011B89: call_init.part.0 (dl-init.c:72)<br>==1286939== by 0x4011C90: call_init (dl-init.c:30)<br>==1286939== by 0x4011C90: _dl_init (dl-init.c:119)<br>==1286939== by 0x65D6784: _dl_catch_exception (dl-error-skeleton.c:182)<br>==1286939== by 0x401642C: dl_open_worker (dl-open.c:758)<br>==1286939== by 0x65D6727: _dl_catch_exception (dl-error-skeleton.c:208)<br>==1286939== by 0x40155F9: _dl_open (dl-open.c:837)<br>==1286939== by 0x72DE34B: dlopen_doit (dlopen.c:66)<br>==1286939== by 0x65D6727: _dl_catch_exception (dl-error-skeleton.c:208)<br>==1286939== by 0x65D67F2: _dl_catch_error (dl-error-skeleton.c:227)<br>==1286939== <br>==1286939== 16 bytes in 1 blocks are definitely lost in loss record 7 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x9F1CBEB: ???<br>==1286939== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9EE3527: ???<br>==1286939== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== by 0x15710D: main (testing_main.cpp:8)<br>==1286939== <br>==1286939== 16 bytes in 1 blocks are definitely lost in loss record 8 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x9F1CC66: ???<br>==1286939== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9EE3527: ???<br>==1286939== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== by 0x15710D: main (testing_main.cpp:8)<br>==1286939== <br>==1286939== 16 bytes in 1 blocks are definitely lost in loss record 9 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x9F1CCDA: ???<br>==1286939== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9EE3527: ???<br>==1286939== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== by 0x15710D: main (testing_main.cpp:8)<br>==1286939== <br>==1286939== 25 bytes in 1 blocks are still reachable in loss record 10 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x651550E: strdup (strdup.c:42)<br>==1286939== by 0x68F27BD: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x4B956B6: ompi_pml_v_output_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B95259: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x68D98FC: mca_base_framework_components_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x4B93FAE: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x68E4008: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x4BA1734: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== <br>==1286939== 30 bytes in 1 blocks are definitely lost in loss record 11 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0xA9A859B: ???<br>==1286939== by 0x4011B89: call_init.part.0 (dl-init.c:72)<br>==1286939== by 0x4011C90: call_init (dl-init.c:30)<br>==1286939== by 0x4011C90: _dl_init (dl-init.c:119)<br>==1286939== by 0x65D6784: _dl_catch_exception (dl-error-skeleton.c:182)<br>==1286939== by 0x401642C: dl_open_worker (dl-open.c:758)<br>==1286939== by 0x65D6727: _dl_catch_exception (dl-error-skeleton.c:208)<br>==1286939== by 0x40155F9: _dl_open (dl-open.c:837)<br>==1286939== by 0x72DE34B: dlopen_doit (dlopen.c:66)<br>==1286939== by 0x65D6727: _dl_catch_exception (dl-error-skeleton.c:208)<br>==1286939== by 0x65D67F2: _dl_catch_error (dl-error-skeleton.c:227)<br>==1286939== by 0x72DEB58: _dlerror_run (dlerror.c:170)<br>==1286939== <br>==1286939== 32 bytes in 1 blocks are still reachable in loss record 12 of 44<br>==1286939== at 0x483DD99: calloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x7CC353E: event_get_supported_methods (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x68FEA98: opal_event_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68FE8CA: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E4008: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68B8BCF: opal_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x6860120: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== <br>==1286939== 32 bytes in 1 blocks are definitely lost in loss record 13 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A5EB: ???<br>==1286939== by 0x84D2B0A: ???<br>==1286939== by 0x68602FB: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== 32 bytes in 1 blocks are definitely lost in loss record 14 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A5EB: ???<br>==1286939== by 0x84D2BCE: ???<br>==1286939== by 0x68602FB: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== 32 bytes in 1 blocks are definitely lost in loss record 15 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A5EB: ???<br>==1286939== by 0x84D2CB2: ???<br>==1286939== by 0x68602FB: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== 32 bytes in 1 blocks are definitely lost in loss record 16 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A5EB: ???<br>==1286939== by 0x84D2D91: ???<br>==1286939== by 0x68602FB: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== 32 bytes in 1 blocks are definitely lost in loss record 17 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E81BD8: ???<br>==1286939== by 0x8E89F4B: ???<br>==1286939== by 0x8D84A0D: ???<br>==1286939== by 0x8DF79C1: ???<br>==1286939== by 0x7CC3FDD: ??? (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x7CC487E: event_base_loop (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x8DBDD55: ???<br>==1286939== by 0x4BF7608: start_thread (pthread_create.c:477)<br>==1286939== by 0x6595102: clone (clone.S:95)<br>==1286939== <br>==1286939== 32 bytes in 1 blocks are definitely lost in loss record 18 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A767: ???<br>==1286939== by 0x84D330E: ???<br>==1286939== by 0x68602FB: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== 36 (32 direct, 4 indirect) bytes in 1 blocks are definitely lost in loss record 19 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A5EB: ???<br>==1286939== by 0x4B94C09: mca_pml_base_pml_check_selected (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x9F1E1E1: ???<br>==1286939== by 0x4BA1A09: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== 40 bytes in 1 blocks are still reachable in loss record 20 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x7CFF4B6: ??? (in /usr/lib/x86_64-linux-gnu/libevent_pthreads-2.1.so.7.0.0)<br>==1286939== by 0x7CC5E26: event_global_setup_locks_ (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x7CFF68F: evthread_use_pthreads (in /usr/lib/x86_64-linux-gnu/libevent_pthreads-2.1.so.7.0.0)<br>==1286939== by 0x68FE8E4: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E4008: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68B8BCF: opal_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x6860120: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== <br>==1286939== 40 bytes in 1 blocks are still reachable in loss record 21 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x7CFF4B6: ??? (in /usr/lib/x86_64-linux-gnu/libevent_pthreads-2.1.so.7.0.0)<br>==1286939== by 0x7CCF377: evsig_global_setup_locks_ (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x7CC5E39: event_global_setup_locks_ (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x7CFF68F: evthread_use_pthreads (in /usr/lib/x86_64-linux-gnu/libevent_pthreads-2.1.so.7.0.0)<br>==1286939== by 0x68FE8E4: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E4008: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68B8BCF: opal_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x6860120: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== <br>==1286939== 40 bytes in 1 blocks are still reachable in loss record 22 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x7CFF4B6: ??? (in /usr/lib/x86_64-linux-gnu/libevent_pthreads-2.1.so.7.0.0)<br>==1286939== by 0x7CCB997: evutil_secure_rng_global_setup_locks_ (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x7CC5E4F: event_global_setup_locks_ (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x7CFF68F: evthread_use_pthreads (in /usr/lib/x86_64-linux-gnu/libevent_pthreads-2.1.so.7.0.0)<br>==1286939== by 0x68FE8E4: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E4008: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68B8BCF: opal_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x6860120: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== <br>==1286939== 48 bytes in 1 blocks are still reachable in loss record 23 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x68D9043: mca_base_component_repository_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68D7F7A: mca_base_component_find (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3A4D: mca_base_framework_components_register (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3F35: mca_base_framework_register (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3F93: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x4B8560C: mca_io_base_file_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B0E68A: ompi_file_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B3ADB8: PMPI_File_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x7B6F1AC: H5FD_mpio_open (H5FDmpio.c:997)<br>==1286939== by 0x78D4B23: H5FD_open (H5FD.c:733)<br>==1286939== by 0x78B953B: H5F_open (H5Fint.c:1493)<br>==1286939== <br>==1286939== 48 bytes in 1 blocks are still reachable in loss record 24 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x68D9043: mca_base_component_repository_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68D7F7A: mca_base_component_find (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3A4D: mca_base_framework_components_register (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3F35: mca_base_framework_register (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3F93: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x4B85638: mca_io_base_file_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B0E68A: ompi_file_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B3ADB8: PMPI_File_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x7B6F1AC: H5FD_mpio_open (H5FDmpio.c:997)<br>==1286939== by 0x78D4B23: H5FD_open (H5FD.c:733)<br>==1286939== by 0x78B953B: H5F_open (H5Fint.c:1493)<br>==1286939== <br>==1286939== 48 bytes in 2 blocks are still reachable in loss record 25 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x7CC3647: event_config_avoid_method (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x68FEB5A: opal_event_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68FE8CA: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E4008: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68B8BCF: opal_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x6860120: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== <br>==1286939== 55 (32 direct, 23 indirect) bytes in 1 blocks are definitely lost in loss record 26 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A767: ???<br>==1286939== by 0x4AF6CD6: ompi_comm_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA194D: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== <br>==1286939== 56 bytes in 1 blocks are still reachable in loss record 27 of 44<br>==1286939== at 0x483DD99: calloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x7CC1C86: event_config_new (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x68FEAC0: opal_event_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68FE8CA: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E4008: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68B8BCF: opal_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x6860120: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== <br>==1286939== 56 bytes in 1 blocks are definitely lost in loss record 28 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x9F6E008: ???<br>==1286939== by 0x9F7C654: ???<br>==1286939== by 0x9F1CD3E: ???<br>==1286939== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9EE3527: ???<br>==1286939== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== <br>==1286939== 56 bytes in 1 blocks are definitely lost in loss record 29 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0xA957008: ???<br>==1286939== by 0xA86B017: ???<br>==1286939== by 0xA862FD8: ???<br>==1286939== by 0xA828E15: ???<br>==1286939== by 0xA829624: ???<br>==1286939== by 0x9F77910: ???<br>==1286939== by 0x4B85C53: ompi_mtl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x9F13E4D: ???<br>==1286939== by 0x4B94673: mca_pml_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA1789: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== 76 (32 direct, 44 indirect) bytes in 1 blocks are definitely lost in loss record 30 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A767: ???<br>==1286939== by 0x84D387F: ???<br>==1286939== by 0x68602FB: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== 79 (64 direct, 15 indirect) bytes in 1 blocks are definitely lost in loss record 31 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x9EDB12E: ???<br>==1286939== by 0x68D98FC: mca_base_framework_components_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x6907C25: ??? (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E4008: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x4BA16D5: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== by 0x15710D: main (testing_main.cpp:8)<br>==1286939== <br>==1286939== 144 bytes in 3 blocks are still reachable in loss record 32 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x68D9043: mca_base_component_repository_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68D7F7A: mca_base_component_find (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3A4D: mca_base_framework_components_register (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3F35: mca_base_framework_register (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3F93: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x4B8564E: mca_io_base_file_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B0E68A: ompi_file_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B3ADB8: PMPI_File_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x7B6F1AC: H5FD_mpio_open (H5FDmpio.c:997)<br>==1286939== by 0x78D4B23: H5FD_open (H5FD.c:733)<br>==1286939== by 0x78B953B: H5F_open (H5Fint.c:1493)<br>==1286939== <br>==1286939== 231 bytes in 12 blocks are definitely lost in loss record 33 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x651550E: strdup (strdup.c:42)<br>==1286939== by 0x9F2B4B3: ???<br>==1286939== by 0x9F2B85C: ???<br>==1286939== by 0x9F2BBD7: ???<br>==1286939== by 0x9F1CAAC: ???<br>==1286939== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9EE3527: ???<br>==1286939== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== <br>==1286939== 240 bytes in 5 blocks are still reachable in loss record 34 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x68D9043: mca_base_component_repository_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68D7F7A: mca_base_component_find (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3A4D: mca_base_framework_components_register (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3F35: mca_base_framework_register (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x68E3F93: mca_base_framework_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x4B85622: mca_io_base_file_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B0E68A: ompi_file_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B3ADB8: PMPI_File_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x7B6F1AC: H5FD_mpio_open (H5FDmpio.c:997)<br>==1286939== by 0x78D4B23: H5FD_open (H5FD.c:733)<br>==1286939== by 0x78B953B: H5F_open (H5Fint.c:1493)<br>==1286939== <br>==1286939== 272 bytes in 44 blocks are definitely lost in loss record 35 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x9FCAEDB: ???<br>==1286939== by 0x9FE42B2: ???<br>==1286939== by 0x9FE47BB: ???<br>==1286939== by 0x9FCDDBF: ???<br>==1286939== by 0x9FA324A: ???<br>==1286939== by 0x4B3DD7F: PMPI_File_write_at_all (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x7B6DB32: H5FD_mpio_write (H5FDmpio.c:1833)<br>==1286939== by 0x78DF11D: H5FD_write (H5FDint.c:257)<br>==1286939== by 0x78AE86B: H5F__accum_write (H5Faccum.c:825)<br>==1286939== by 0x7A1FBE9: H5PB_write (H5PB.c:1027)<br>==1286939== by 0x78BBC7A: H5F_block_write (H5Fio.c:164)<br>==1286939== <br>==1286939== 585 (480 direct, 105 indirect) bytes in 15 blocks are definitely lost in loss record 36 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A767: ???<br>==1286939== by 0x4B14036: ompi_proc_complete_init_single (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B146C3: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA19A9: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== 776 bytes in 32 blocks are indirectly lost in loss record 37 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8DE9816: ???<br>==1286939== by 0x8DEB1D2: ???<br>==1286939== by 0x8DEB49A: ???<br>==1286939== by 0x8DE8B12: ???<br>==1286939== by 0x8E9D492: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A767: ???<br>==1286939== <br>==1286939== 840 (480 direct, 360 indirect) bytes in 15 blocks are definitely lost in loss record 38 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A5EB: ???<br>==1286939== by 0x9EF2F00: ???<br>==1286939== by 0x9EEBF17: ???<br>==1286939== by 0x9EE2F54: ???<br>==1286939== by 0x9F1E1FB: ???<br>==1286939== <br>==1286939== 1,084 (480 direct, 604 indirect) bytes in 15 blocks are definitely lost in loss record 39 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A767: ???<br>==1286939== by 0x84D4800: ???<br>==1286939== by 0x68602FB: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286939== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== 1,344 bytes in 1 blocks are definitely lost in loss record 40 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x68AE702: opal_free_list_grow_st (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9F1CD2D: ???<br>==1286939== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9EE3527: ???<br>==1286939== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== by 0x15710D: main (testing_main.cpp:8)<br>==1286939== <br>==1286939== 2,752 bytes in 1 blocks are definitely lost in loss record 41 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x68AE702: opal_free_list_grow_st (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9F1CC50: ???<br>==1286939== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9EE3527: ???<br>==1286939== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== by 0x15710D: main (testing_main.cpp:8)<br>==1286939== <br>==1286939== 2,752 bytes in 1 blocks are definitely lost in loss record 42 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x68AE702: opal_free_list_grow_st (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9F1CCC4: ???<br>==1286939== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286939== by 0x9EE3527: ???<br>==1286939== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286939== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286939== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286939== by 0x15710D: main (testing_main.cpp:8)<br>==1286939== <br>==1286939== 62,644 bytes in 31 blocks are indirectly lost in loss record 43 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8DE9FA8: ???<br>==1286939== by 0x8DEB032: ???<br>==1286939== by 0x8DEB49A: ???<br>==1286939== by 0x8DE8B12: ???<br>==1286939== by 0x8E9D492: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A5EB: ???<br>==1286939== <br>==1286939== 62,760 (480 direct, 62,280 indirect) bytes in 15 blocks are definitely lost in loss record 44 of 44<br>==1286939== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8E9D3EB: ???<br>==1286939== by 0x8E9F1C1: ???<br>==1286939== by 0x8D0578C: ???<br>==1286939== by 0x8D8605A: ???<br>==1286939== by 0x8D87FE8: ???<br>==1286939== by 0x8D88E4D: ???<br>==1286939== by 0x8D1A5EB: ???<br>==1286939== by 0x9F0398A: ???<br>==1286939== by 0x9EE2F54: ???<br>==1286939== by 0x9F1E1FB: ???<br>==1286939== by 0x4BA1A09: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286939== <br>==1286939== LEAK SUMMARY:<br>==1286939== definitely lost: 9,837 bytes in 138 blocks<br>==1286939== indirectly lost: 63,435 bytes in 64 blocks<br>==1286939== possibly lost: 0 bytes in 0 blocks<br>==1286939== still reachable: 782 bytes in 21 blocks<br>==1286939== suppressed: 0 bytes in 0 blocks<br>==1286939== <br>==1286939== ERROR SUMMARY: 29 errors from 29 contexts (suppressed: 0 from 0)<br>==1286939== <br>==1286939== 1 errors in context 1 of 29:<br>==1286939== Thread 3:<br>==1286939== Syscall param writev(vector[...]) points to uninitialised byte(s)<br>==1286939== at 0x658A48D: __writev (writev.c:26)<br>==1286939== by 0x658A48D: writev (writev.c:24)<br>==1286939== by 0x8DF9B4C: ???<br>==1286939== by 0x7CC413E: ??? (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x7CC487E: event_base_loop (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x8DBDD55: ???<br>==1286939== by 0x4BF7608: start_thread (pthread_create.c:477)<br>==1286939== by 0x6595102: clone (clone.S:95)<br>==1286939== Address 0xa28ee1f is 127 bytes inside a block of size 5,120 alloc'd<br>==1286939== at 0x483DFAF: realloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286939== by 0x8DE155A: ???<br>==1286939== by 0x8DE3F4A: ???<br>==1286939== by 0x8DE4900: ???<br>==1286939== by 0x8DE4175: ???<br>==1286939== by 0x8D7CF91: ???<br>==1286939== by 0x7CC3FDD: ??? (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x7CC487E: event_base_loop (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286939== by 0x8DBDD55: ???<br>==1286939== by 0x4BF7608: start_thread (pthread_create.c:477)<br>==1286939== by 0x6595102: clone (clone.S:95)<br>==1286939== Uninitialised value was created by a stack allocation<br>==1286939== at 0x9F048D6: ???<br>==1286939== <br>==1286939== ERROR SUMMARY: 29 errors from 29 contexts (suppressed: 0 from 0)<br>mpi/lib/libopen-pal.so.40.20.3)<br>==1286936== by 0x4B85622: mca_io_base_file_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4B0E68A: ompi_file_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4B3ADB8: PMPI_File_open (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x7B6F1AC: H5FD_mpio_open (H5FDmpio.c:997)<br>==1286936== by 0x78D4B23: H5FD_open (H5FD.c:733)<br>==1286936== by 0x78B953B: H5F_open (H5Fint.c:1493)<br>==1286936== <br>==1286936== 272 bytes in 44 blocks are definitely lost in loss record 39 of 49<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x9FCAEDB: ???<br>==1286936== by 0x9FE42B2: ???<br>==1286936== by 0x9FE47BB: ???<br>==1286936== by 0x9FCDDBF: ???<br>==1286936== by 0x9FA324A: ???<br>==1286936== by 0x4B3DD7F: PMPI_File_write_at_all (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x7B6DB32: H5FD_mpio_write (H5FDmpio.c:1833)<br>==1286936== by 0x78DF11D: H5FD_write (H5FDint.c:257)<br>==1286936== by 0x78AE86B: H5F__accum_write (H5Faccum.c:825)<br>==1286936== by 0x7A1FBE9: H5PB_write (H5PB.c:1027)<br>==1286936== by 0x78BBC7A: H5F_block_write (H5Fio.c:164)<br>==1286936== <br>==1286936== 312 bytes in 1 blocks are still reachable in loss record 40 of 49<br>==1286936== at 0x483BE63: operator new(unsigned long) (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x74E78EB: boost::detail::make_external_thread_data() (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_thread.so.1.73.0)<br>==1286936== by 0x74E7C74: boost::detail::add_thread_exit_function(boost::detail::thread_exit_function_base*) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_thread.so.1.73.0)<br>==1286936== by 0x73AFCEA: boost::log::v2_mt_posix::sources::aux::get_severity_level() (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_log.so.1.73.0)<br>==1286936== by 0x5F71A6C: set_value (severity_feature.hpp:135)<br>==1286936== by 0x5F71A6C: open_record_unlocked<boost::parameter::aux::tagged_argument_list_of_1<boost::parameter::aux::tagged_argument<boost::log::v2_mt_posix::keywords::tag::severity, const boost::log::v2_mt_posix::trivial::severity_level> > > (severity_feature.hpp:252)<br>==1286936== by 0x5F71A6C: open_record<boost::parameter::aux::tagged_argument_list_of_1<boost::parameter::aux::tagged_argument<boost::log::v2_mt_posix::keywords::tag::severity, const boost::log::v2_mt_posix::trivial::severity_level> > > (basic_logger.hpp:459)<br>==1286936== by 0x5F71A6C: Logger::TraceMessage(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >) (logger.cpp:328)<br>==1286936== by 0x5F729C7: Logger::Message(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, LogLevel) (logger.cpp:280)<br>==1286936== by 0x5F73CF1: Logger::Timer::Timer(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, LogLevel) (logger.cpp:426)<br>==1286936== by 0x15718A: timer (logger.hpp:98)<br>==1286936== by 0x15718A: main (testing_main.cpp:9)<br>==1286936== <br>==1286936== 585 (480 direct, 105 indirect) bytes in 15 blocks are definitely lost in loss record 41 of 49<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x8E9D3EB: ???<br>==1286936== by 0x8E9F1C1: ???<br>==1286936== by 0x8D0578C: ???<br>==1286936== by 0x8D8605A: ???<br>==1286936== by 0x8D87FE8: ???<br>==1286936== by 0x8D88E4D: ???<br>==1286936== by 0x8D1A767: ???<br>==1286936== by 0x4B14036: ompi_proc_complete_init_single (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4B146C3: ompi_proc_complete_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4BA19A9: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== <br>==1286936== 776 bytes in 32 blocks are indirectly lost in loss record 42 of 49<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x8DE9816: ???<br>==1286936== by 0x8DEB1D2: ???<br>==1286936== by 0x8DEB49A: ???<br>==1286936== by 0x8DE8B12: ???<br>==1286936== by 0x8E9D492: ???<br>==1286936== by 0x8E9F1C1: ???<br>==1286936== by 0x8D0578C: ???<br>==1286936== by 0x8D8605A: ???<br>==1286936== by 0x8D87FE8: ???<br>==1286936== by 0x8D88E4D: ???<br>==1286936== by 0x8D1A767: ???<br>==1286936== <br>==1286936== 840 (480 direct, 360 indirect) bytes in 15 blocks are definitely lost in loss record 43 of 49<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x8E9D3EB: ???<br>==1286936== by 0x8E9F1C1: ???<br>==1286936== by 0x8D0578C: ???<br>==1286936== by 0x8D8605A: ???<br>==1286936== by 0x8D87FE8: ???<br>==1286936== by 0x8D88E4D: ???<br>==1286936== by 0x8D1A5EB: ???<br>==1286936== by 0x9EF2F00: ???<br>==1286936== by 0x9EEBF17: ???<br>==1286936== by 0x9EE2F54: ???<br>==1286936== by 0x9F1E1FB: ???<br>==1286936== <br>==1286936== 1,091 (480 direct, 611 indirect) bytes in 15 blocks are definitely lost in loss record 44 of 49<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x8E9D3EB: ???<br>==1286936== by 0x8E9F1C1: ???<br>==1286936== by 0x8D0578C: ???<br>==1286936== by 0x8D8605A: ???<br>==1286936== by 0x8D87FE8: ???<br>==1286936== by 0x8D88E4D: ???<br>==1286936== by 0x8D1A767: ???<br>==1286936== by 0x84D4800: ???<br>==1286936== by 0x68602FB: orte_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-rte.so.40.20.3)<br>==1286936== by 0x4BA1322: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== <br>==1286936== 1,344 bytes in 1 blocks are definitely lost in loss record 45 of 49<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x68AE702: opal_free_list_grow_st (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286936== by 0x9F1CD2D: ???<br>==1286936== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286936== by 0x9EE3527: ???<br>==1286936== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286936== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286936== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286936== by 0x15710D: main (testing_main.cpp:8)<br>==1286936== <br>==1286936== 2,752 bytes in 1 blocks are definitely lost in loss record 46 of 49<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x68AE702: opal_free_list_grow_st (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286936== by 0x9F1CC50: ???<br>==1286936== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286936== by 0x9EE3527: ???<br>==1286936== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286936== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286936== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286936== by 0x15710D: main (testing_main.cpp:8)<br>==1286936== <br>==1286936== 2,752 bytes in 1 blocks are definitely lost in loss record 47 of 49<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x68AE702: opal_free_list_grow_st (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286936== by 0x9F1CCC4: ???<br>==1286936== by 0x68FC9C8: mca_btl_base_select (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libopen-pal.so.40.20.3)<br>==1286936== by 0x9EE3527: ???<br>==1286936== by 0x4B6170A: mca_bml_base_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4BA1714: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4B450B0: PMPI_Init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x4A7BA77: boost::mpi::environment::environment(bool) (in /home/mlohry/dev/cmake-build/boost_install/lib/libboost_mpi.so.1.73.0)<br>==1286936== by 0x5F1F232: Parallel::Parallel() (parallel.cpp:19)<br>==1286936== by 0x16CDDB: Parallel::Get() (parallel.hpp:40)<br>==1286936== by 0x15710D: main (testing_main.cpp:8)<br>==1286936== <br>==1286936== 62,640 bytes in 30 blocks are indirectly lost in loss record 48 of 49<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x8DE9FA8: ???<br>==1286936== by 0x8DEB032: ???<br>==1286936== by 0x8DEB49A: ???<br>==1286936== by 0x8DE8B12: ???<br>==1286936== by 0x8E9D492: ???<br>==1286936== by 0x8E9F1C1: ???<br>==1286936== by 0x8D0578C: ???<br>==1286936== by 0x8D8605A: ???<br>==1286936== by 0x8D87FE8: ???<br>==1286936== by 0x8D88E4D: ???<br>==1286936== by 0x8D1A5EB: ???<br>==1286936== <br>==1286936== 62,760 (480 direct, 62,280 indirect) bytes in 15 blocks are definitely lost in loss record 49 of 49<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x8E9D3EB: ???<br>==1286936== by 0x8E9F1C1: ???<br>==1286936== by 0x8D0578C: ???<br>==1286936== by 0x8D8605A: ???<br>==1286936== by 0x8D87FE8: ???<br>==1286936== by 0x8D88E4D: ???<br>==1286936== by 0x8D1A5EB: ???<br>==1286936== by 0x9F0398A: ???<br>==1286936== by 0x9EE2F54: ???<br>==1286936== by 0x9F1E1FB: ???<br>==1286936== by 0x4BA1A09: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== <br>==1286936== LEAK SUMMARY:<br>==1286936== definitely lost: 9,805 bytes in 137 blocks<br>==1286936== indirectly lost: 63,431 bytes in 63 blocks<br>==1286936== possibly lost: 0 bytes in 0 blocks<br>==1286936== still reachable: 1,174 bytes in 27 blocks<br>==1286936== suppressed: 0 bytes in 0 blocks<br>==1286936== <br>==1286936== ERROR SUMMARY: 34 errors from 29 contexts (suppressed: 0 from 0)<br>==1286936== <br>==1286936== 1 errors in context 1 of 29:<br>==1286936== Thread 3:<br>==1286936== Syscall param writev(vector[...]) points to uninitialised byte(s)<br>==1286936== at 0x658A48D: __writev (writev.c:26)<br>==1286936== by 0x658A48D: writev (writev.c:24)<br>==1286936== by 0x8DF9B4C: ???<br>==1286936== by 0x7CC413E: ??? (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286936== by 0x7CC487E: event_base_loop (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286936== by 0x8DBDD55: ???<br>==1286936== by 0x4BF7608: start_thread (pthread_create.c:477)<br>==1286936== by 0x6595102: clone (clone.S:95)<br>==1286936== Address 0xa290cbf is 127 bytes inside a block of size 5,120 alloc'd<br>==1286936== at 0x483DFAF: realloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x8DE155A: ???<br>==1286936== by 0x8DE3F4A: ???<br>==1286936== by 0x8DE4900: ???<br>==1286936== by 0x8DE4175: ???<br>==1286936== by 0x8D7CF91: ???<br>==1286936== by 0x7CC3FDD: ??? (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286936== by 0x7CC487E: event_base_loop (in /usr/lib/x86_64-linux-gnu/libevent-2.1.so.7.0.0)<br>==1286936== by 0x8DBDD55: ???<br>==1286936== by 0x4BF7608: start_thread (pthread_create.c:477)<br>==1286936== by 0x6595102: clone (clone.S:95)<br>==1286936== Uninitialised value was created by a stack allocation<br>==1286936== at 0x9F048D6: ???<br>==1286936== <br>==1286936== <br>==1286936== 6 errors in context 2 of 29:<br>==1286936== Thread 1:<br>==1286936== Syscall param pwritev(vector[...]) points to uninitialised byte(s)<br>==1286936== at 0x658A608: pwritev64 (pwritev64.c:30)<br>==1286936== by 0x658A608: pwritev (pwritev64.c:28)<br>==1286936== by 0x9F46E25: ???<br>==1286936== by 0x9FCE33B: ???<br>==1286936== by 0x9FCDDBF: ???<br>==1286936== by 0x9FA324A: ???<br>==1286936== by 0x4B3DD7F: PMPI_File_write_at_all (in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so.40.20.3)<br>==1286936== by 0x7B6DB32: H5FD_mpio_write (H5FDmpio.c:1833)<br>==1286936== by 0x78DF11D: H5FD_write (H5FDint.c:257)<br>==1286936== by 0x78AE86B: H5F__accum_write (H5Faccum.c:825)<br>==1286936== by 0x7A1FBE9: H5PB_write (H5PB.c:1027)<br>==1286936== by 0x78BBC7A: H5F_block_write (H5Fio.c:164)<br>==1286936== by 0x7B5ED15: H5C__collective_write (H5Cmpio.c:1020)<br>==1286936== by 0x7B5ED15: H5C_apply_candidate_list (H5Cmpio.c:394)<br>==1286936== Address 0xedf91b0 is 96 bytes inside a block of size 216 alloc'd<br>==1286936== at 0x483B7F3: malloc (in /usr/lib/x86_64-linux-gnu/valgrind/vgpreload_memcheck-amd64-linux.so)<br>==1286936== by 0x7980C45: H5MM_malloc (H5MM.c:292)<br>==1286936== by 0x7980C45: H5MM_malloc (H5MM.c:267)<br>==1286936== by 0x77FC8FF: H5C__flush_single_entry (H5C.c:6045)<br>==1286936== by 0x7B5DC7E: H5C__flush_candidates_in_ring (H5Cmpio.c:1371)<br>==1286936== by 0x7B5DC7E: H5C__flush_candidate_entries (H5Cmpio.c:1192)<br>==1286936== by 0x7B5DC7E: H5C_apply_candidate_list (H5Cmpio.c:385)<br>==1286936== by 0x7B5BA18: H5AC__rsp__dist_md_write__flush (H5ACmpio.c:1709)<br>==1286936== by 0x7B5BA18: H5AC__run_sync_point (H5ACmpio.c:2164)<br>==1286936== by 0x7B5C9D2: H5AC__flush_entries (H5ACmpio.c:2307)<br>==1286936== by 0x77C95E4: H5AC_flush (H5AC.c:681)<br>==1286936== by 0x78B306A: H5F__flush_phase2 (H5Fint.c:1831)<br>==1286936== by 0x78B5D7A: H5F__dest (H5Fint.c:1152)<br>==1286936== by 0x78B6603: H5F_try_close (H5Fint.c:2180)<br>==1286936== by 0x78B69F5: H5F__close_cb (H5Fint.c:2009)<br>==1286936== by 0x7965797: H5I_dec_ref (H5I.c:1254)<br>==1286936== Uninitialised value was created by a stack allocation<br>==1286936== at 0x7695AF0: ??? (in /home/mlohry/dev/cmake-build/external_install/lib/libcgns.so)<br>==1286936== <br>==1286936== ERROR SUMMARY: 34 errors from 29 contexts (suppressed: 0 from 0)<br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Aug 24, 2020 at 5:00 PM Jed Brown <<a href="mailto:jed@jedbrown.org" target="_blank">jed@jedbrown.org</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Do you potentially have a memory or other resource leak? SIGBUS would be an odd result, but the symptom of crashing after running for a long time sometimes fits with a resource leak.<br>
<br>
Mark Lohry <<a href="mailto:mlohry@gmail.com" target="_blank">mlohry@gmail.com</a>> writes:<br>
<br>
> I queued up some jobs with Barry's patch, so we'll see.<br>
><br>
> Re Jed's suggestion at checkpointing, I don't *think* this is something<br>
> coming from the state of the solution -- running from the same point I'm<br>
> seeing it crash anywhere between 1 hour and 20 hours in. I'll increase my<br>
> file save frequency in case I'm wrong there though.<br>
><br>
> My intel build with different blas just made it through a 6 hour time slot<br>
> without crash, whereas yesterday the same thing crashed after 3 hours. But<br>
> given the randomness so far I'd bet that's just dumb luck.<br>
><br>
> On Mon, Aug 24, 2020 at 4:22 PM Barry Smith <<a href="mailto:bsmith@petsc.dev" target="_blank">bsmith@petsc.dev</a>> wrote:<br>
><br>
>><br>
>><br>
>> > On Aug 24, 2020, at 2:34 PM, Jed Brown <<a href="mailto:jed@jedbrown.org" target="_blank">jed@jedbrown.org</a>> wrote:<br>
>> ><br>
>> > I'm thinking of something such as writing floating point data into the<br>
>> return address, which would be unaligned/garbage.<br>
>><br>
>> Ok, my patch will detect this. This is what I was talking about, messing<br>
>> up the BLAS arguments which are the addresses of arrays.<br>
>><br>
>> Valgrind is by far the preferred approach.<br>
>><br>
>> Barry<br>
>><br>
>> Another feature we could add to the malloc checking is when a SEGV or<br>
>> BUS error is encountered and we catch it we should run the<br>
>> PetscMallocVerify() and check our memory for corruption reporting any we<br>
>> find.<br>
>><br>
>><br>
>><br>
>> ><br>
>> > Reproducing under Valgrind would help a lot. Perhaps it's possible to<br>
>> checkpoint such that the breakage can be reproduced more quickly?<br>
>> ><br>
>> > Barry Smith <<a href="mailto:bsmith@petsc.dev" target="_blank">bsmith@petsc.dev</a>> writes:<br>
>> ><br>
>> >> <a href="https://en.wikipedia.org/wiki/Bus_error" rel="noreferrer" target="_blank">https://en.wikipedia.org/wiki/Bus_error</a> <<br>
>> <a href="https://en.wikipedia.org/wiki/Bus_error" rel="noreferrer" target="_blank">https://en.wikipedia.org/wiki/Bus_error</a>><br>
>> >><br>
>> >> But perhaps not true for Intel?<br>
>> >><br>
>> >><br>
>> >><br>
>> >>> On Aug 24, 2020, at 1:06 PM, Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>><br>
>> wrote:<br>
>> >>><br>
>> >>> On Mon, Aug 24, 2020 at 1:46 PM Barry Smith <<a href="mailto:bsmith@petsc.dev" target="_blank">bsmith@petsc.dev</a> <mailto:<br>
>> <a href="mailto:bsmith@petsc.dev" target="_blank">bsmith@petsc.dev</a>>> wrote:<br>
>> >>><br>
>> >>><br>
>> >>>> On Aug 24, 2020, at 12:39 PM, Jed Brown <<a href="mailto:jed@jedbrown.org" target="_blank">jed@jedbrown.org</a> <mailto:<br>
>> <a href="mailto:jed@jedbrown.org" target="_blank">jed@jedbrown.org</a>>> wrote:<br>
>> >>>><br>
>> >>>> Barry Smith <<a href="mailto:bsmith@petsc.dev" target="_blank">bsmith@petsc.dev</a> <mailto:<a href="mailto:bsmith@petsc.dev" target="_blank">bsmith@petsc.dev</a>>> writes:<br>
>> >>>><br>
>> >>>>>> On Aug 24, 2020, at 12:31 PM, Jed Brown <<a href="mailto:jed@jedbrown.org" target="_blank">jed@jedbrown.org</a> <mailto:<br>
>> <a href="mailto:jed@jedbrown.org" target="_blank">jed@jedbrown.org</a>>> wrote:<br>
>> >>>>>><br>
>> >>>>>> Barry Smith <<a href="mailto:bsmith@petsc.dev" target="_blank">bsmith@petsc.dev</a> <mailto:<a href="mailto:bsmith@petsc.dev" target="_blank">bsmith@petsc.dev</a>>> writes:<br>
>> >>>>>><br>
>> >>>>>>> So if a BLAS errors with SIGBUS then it is always an input error<br>
>> of just not proper double/complex alignment? Or some other very strange<br>
>> thing?<br>
>> >>>>>><br>
>> >>>>>> I would suspect memory corruption.<br>
>> >>>>><br>
>> >>>>><br>
>> >>>>> Corruption meaning what specifically?<br>
>> >>>>><br>
>> >>>>> The routines crashing are dgemv which only take double precision<br>
>> arrays, regardless of what garbage is in those arrays i don't think there<br>
>> can be BUS errors resulting. They don't take integer arrays whose<br>
>> corruption could result in bad indexing and then BUS errors.<br>
>> >>>>><br>
>> >>>>> So then it can only be corruption of the pointers passed in, correct?<br>
>> >>>><br>
>> >>>> Such as those pointers pointing into data on the stack with incorrect<br>
>> sizes.<br>
>> >>><br>
>> >>> But won't incorrect sizes "usually" lead to SEGV not SEGBUS?<br>
>> >>><br>
>> >>> My understanding was that roughly memory errors in the heap are SEGV<br>
>> and memory errors on the stack are SIGBUS. Is that not true?<br>
>> >>><br>
>> >>> Matt<br>
>> >>><br>
>> >>> --<br>
>> >>> What most experimenters take for granted before they begin their<br>
>> experiments is infinitely more interesting than any results to which their<br>
>> experiments lead.<br>
>> >>> -- Norbert Wiener<br>
>> >>><br>
>> >>> <a href="https://www.cse.buffalo.edu/~knepley/" rel="noreferrer" target="_blank">https://www.cse.buffalo.edu/~knepley/</a> <<br>
>> <a href="http://www.cse.buffalo.edu/~knepley/" rel="noreferrer" target="_blank">http://www.cse.buffalo.edu/~knepley/</a>><br>
>><br>
>><br>
</blockquote></div>
</blockquote></div>
</div></blockquote></div><br></div></div></blockquote></div>