========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing. http://www.mcs.anl.gov/petsc/miscellaneous/mailing-lists.html ========================================== Starting make run on greyfurt2 at Cum, 31 Tem 2020 10:18:13 +0300 Machine characteristics: Linux greyfurt2 5.3.0-51-generic #44~18.04.2-Ubuntu SMP Thu Apr 23 14:27:18 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux ----------------------------------------- Using PETSc directory: /home/eda/petsc-3.13.2 Using PETSc arch: arch-linux-c-debug ----------------------------------------- PETSC_VERSION_RELEASE 1 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 13 PETSC_VERSION_SUBMINOR 2 PETSC_VERSION_PATCH 0 PETSC_VERSION_DATE "Jun 02, 2020" PETSC_VERSION_GIT "v3.13.2" PETSC_VERSION_DATE_GIT "2020-06-02 22:44:02 -0500" PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_ PETSC_VERSION_EQ PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-mpich --download-openblas --download-metis --download-parmetis --download-chaco --download-slepc --with-X=1 --force Using configuration flags: #define INCLUDED_PETSCCONF_H #define IS_COLORING_MAX USHRT_MAX #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_ARCH "arch-linux-c-debug" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated)) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/home/eda/petsc-3.13.2" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_CHACO 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MPICH 1 #define PETSC_HAVE_OPENBLAS 1 #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_LIB_DIR "/home/eda/petsc-3.13.2/arch-linux-c-debug/lib" #define PETSC_MPICC_SHOW "gcc -fPIC -fstack-protector -g3 -I/home/eda/petsc-3.13.2/arch-linux-c-debug/include -L/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -Wl,-rpath -Wl,/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -Wl,--enable-new-dtags -lmpi" #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_ISATTY 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_HAVE_C99 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_HAVE_MPICH_NUMVERSION 30302300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_Alignx(a,b) #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_MEMALIGN 16 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_HAVE_SLEPC 1 #define PETSC_PYTHON_EXE "/usr/bin/python3" ----------------------------------------- Using C compile: /home/eda/petsc-3.13.2/arch-linux-c-debug/bin/mpicc -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 -I/home/eda/petsc-3.13.2/include -I/home/eda/petsc-3.13.2/arch-linux-c-debug/include mpicc -show: gcc -fPIC -fstack-protector -g3 -I/home/eda/petsc-3.13.2/arch-linux-c-debug/include -L/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -Wl,-rpath -Wl,/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -Wl,--enable-new-dtags -lmpi C compiler version: gcc (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0 Using C++ compile: /home/eda/petsc-3.13.2/arch-linux-c-debug/bin/mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -I/home/eda/petsc-3.13.2/include -I/home/eda/petsc-3.13.2/arch-linux-c-debug/include mpicxx -show: g++ -fstack-protector -g -fPIC -I/home/eda/petsc-3.13.2/arch-linux-c-debug/include -L/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -lmpicxx -Wl,-rpath -Wl,/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -Wl,--enable-new-dtags -lmpi C++ compiler version: g++ (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0 Using Fortran compile: /home/eda/petsc-3.13.2/arch-linux-c-debug/bin/mpif90 -c -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -I/home/eda/petsc-3.13.2/include -I/home/eda/petsc-3.13.2/arch-linux-c-debug/include mpif90 -show: gfortran -fPIC -ffree-line-length-0 -g -I/home/eda/petsc-3.13.2/arch-linux-c-debug/include -I/home/eda/petsc-3.13.2/arch-linux-c-debug/include -L/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -lmpifort -Wl,-rpath -Wl,/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -Wl,--enable-new-dtags -lmpi Fortran compiler version: GNU Fortran (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0 ----------------------------------------- Using C/C++ linker: /home/eda/petsc-3.13.2/arch-linux-c-debug/bin/mpicc Using C/C++ flags: -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 Using Fortran linker: /home/eda/petsc-3.13.2/arch-linux-c-debug/bin/mpif90 Using Fortran flags: -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g ----------------------------------------- Using system modules: Using mpi.h: # 1 "/home/eda/petsc-3.13.2/arch-linux-c-debug/include/mpi.h" 1 ----------------------------------------- Using libraries: -Wl,-rpath,/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -L/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -Wl,-rpath,/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -L/home/eda/petsc-3.13.2/arch-linux-c-debug/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lpetsc -lopenblas -lpthread -lchaco -lparmetis -lmetis -lm -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl ------------------------------------------ Using mpiexec: /home/eda/petsc-3.13.2/arch-linux-c-debug/bin/mpiexec ------------------------------------------ Using MAKEFLAGS: -j40 -l96.0 --no-print-directory -- PETSC_ARCH=arch-linux-c-debug PETSC_DIR=/home/eda/petsc-3.13.2 ========================================== /usr/bin/python3 ./config/gmakegen.py --petsc-arch=arch-linux-c-debug Traceback (most recent call last): File "./config/gmakegen.py", line 4, in from distutils.sysconfig import parse_makefile ModuleNotFoundError: No module named 'distutils.sysconfig' gmakefile:63: recipe for target 'arch-linux-c-debug/lib/petsc/conf/files' failed make[3]: *** [arch-linux-c-debug/lib/petsc/conf/files] Error 1 make[3]: *** Waiting for unfinished jobs.... /usr/bin/python3 /home/eda/petsc-3.13.2/config/gmakegentest.py --petsc-dir=/home/eda/petsc-3.13.2 --petsc-arch=arch-linux-c-debug --testdir=./arch-linux-c-debug/tests Traceback (most recent call last): File "/home/eda/petsc-3.13.2/config/gmakegentest.py", line 11, in from gmakegen import * File "/home/eda/petsc-3.13.2/config/gmakegen.py", line 4, in from distutils.sysconfig import parse_makefile ModuleNotFoundError: No module named 'distutils.sysconfig' gmakefile.test:89: recipe for target 'arch-linux-c-debug/tests/testfiles' failed make[3]: *** [arch-linux-c-debug/tests/testfiles] Error 1 /home/eda/petsc-3.13.2/lib/petsc/conf/rules:49: recipe for target 'libs' failed make[2]: *** [libs] Error 2 **************************ERROR************************************* Error during compile, check arch-linux-c-debug/lib/petsc/conf/make.log Send it and arch-linux-c-debug/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov ******************************************************************** Finishing make run at Cum, 31 Tem 2020 10:18:13 +0300