================================================================================ ================================================================================ Starting configure run at Tue, 14 Jul 2020 18:52:06 -0700 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cc=cc --with-cxx=CC --with-fc=ftn COPTFLAGS=" -g -O2" CXXOPTFLAGS="-g -O2" FOPTFLAGS=" -g -O2" --download-fblaslapack=1 --download-hypre=0 --download-metis=1 --download-parmetis=1 --with-debugging=0 --with-mpiexec=srun --with-batch=1 --known-mpi-shared-libraries=1 --with-x=0 --with-hwloc=0 --with-64-bit-indices=1 PETSC_ARCH=arch-cori-knl-opt-intel --with-openmp=0 --download-p4est=0 --prefix=/global/common/software/m1041/petsc_install/petsc_knl_intel PETSC_DIR=/global/homes/m/madams/petsc_install/petsc Working directory: /global/u2/m/madams/petsc_install/petsc Machine platform: uname_result(system='Linux', node='nid02470', release='4.12.14-150.17_5.0.91-cray_ari_c', version='#1 SMP Wed May 27 02:24:01 UTC 2020 (6b16d42)', machine='x86_64', processor='x86_64') Python version: 3.7.4 (default, Aug 13 2019, 20:35:49) [GCC 7.3.0] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/framework.py:933) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:933) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/gdb...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/gdb...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/gdb...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/gdb...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/gdb...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/gdb...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/gdb...not found Checking for program /opt/cray/alps/default/bin/gdb...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/gdb...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/gdb...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/gdb...not found Checking for program /global/common/cori/software/altd/2.0/bin/gdb...not found Checking for program /usr/common/software/bin/gdb...not found Checking for program /usr/common/mss/bin/gdb...not found Checking for program /usr/common/nsg/bin/gdb...not found Checking for program /opt/ovis/bin/gdb...not found Checking for program /opt/ovis/sbin/gdb...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux child config.utilities.debuggers 0.261866 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 13 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.047584 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.006586 ================================================================================ TEST configureGit from config.sourceControl(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/git...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/git...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/git...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/git...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/git...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/git...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/git...not found Checking for program /opt/cray/alps/default/bin/git...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/git...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/git...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/git...not found Checking for program /global/common/cori/software/altd/2.0/bin/git...not found Checking for program /usr/common/software/bin/git...not found Checking for program /usr/common/mss/bin/git...not found Checking for program /usr/common/nsg/bin/git...not found Checking for program /opt/ovis/bin/git...not found Checking for program /opt/ovis/sbin/git...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 2.16.4 child config.sourceControl 0.155886 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Running Executable WITHOUT threads to time it out Executing: ['git', 'describe', '--match=v*'] stdout: v3.13.3-18-g206d3fccd5 Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 206d3fccd5c8bfae663e0c4d101fdd75dd7e29af Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2020-07-09 19:51:57 +0000 Running Executable WITHOUT threads to time it out Executing: ['git', 'branch'] stdout: balay/p4est-add-zlib-dep/maint barry/2019-08-02/robustify-configure-failure-knl barry/fix-mat-subclass-set/maint hzhang/fix-nonscalable-ctable-use knepley/feature-swarm-fortran * maint mark/feature-xgc-interface mark/fix-aijmkl mark/fix-gamg-tests mark/gamg-comment mark/mat-fix-scalable mark/pc-amgx-feature mark/snes-ex56c mark/xgcinterface master Defined "VERSION_GIT" to ""v3.13.3-18-g206d3fccd5"" Defined "VERSION_DATE_GIT" to ""2020-07-09 19:51:57 +0000"" Defined "VERSION_BRANCH_GIT" to ""maint"" child PETSc.options.petscclone 6.676909 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set =============================================================================== Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-cori-knl-opt-intel, ignoring environment: arch-cori-haswell-dbg-intel =============================================================================== No previous hashfile found Setting hashfile: arch-cori-knl-opt-intel/lib/petsc/conf/configure-hash Deleting configure hash file: arch-cori-knl-opt-intel/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-cori-knl-opt-intel/lib/petsc/conf/configure-hash child PETSc.options.arch 2.622447 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Error trying to to test write permissions on directory [Errno 30] Read-only file system: '/global/common/software/m1041/petsc_install/petsc_knl_intel' Defined make macro "PREFIXDIR" to "/global/common/software/m1041/petsc_install/petsc_knl_intel" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/installDir.py:80) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:80) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/installDir.py:73) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:73) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/installDir.py:57) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:57) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/installDir.py:93) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:93) child PETSc.options.installDir 0.062398 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.003781 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.010904 ================================================================================ TEST printEnvVariables from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1725) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1725) **** printenv **** PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_haswell=90 LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.xz=00;31:*.avi=01;35:*.bmp=01;35:*.dl=01;35:*.fli=01;35:*.gif=01;35:*.gl=01;35:*.jpg=01;35:*.jpeg=01;35:*.mkv=01;35:*.mng=01;35:*.mov=01;35:*.mp4=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.svg=01;35:*.tga=01;35:*.tif=01;35:*.webm=01;35:*.webp=01;35:*.wmv=01;35:*.xbm=01;35:*.xcf=01;35:*.xpm=01;35:*.aiff=00;32:*.ape=00;32:*.au=00;32:*.flac=00;32:*.m4a=00;32:*.mid=00;32:*.mp3=00;32:*.mpc=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:*.wma=00;32:*.wv=00;32: LD_LIBRARY_PATH=/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/lib:/opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/lib64:/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY CRAYCLANG GNU INTEL CRAY_IAA_INFO_FILE=/tmp/cray_iaa_info.32423084 CSHRCREAD=true PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 SRUN_DEBUG=3 HOSTTYPE=x86_64 ALPS_LLI_STATUS_OFFSET=1 SLURM_STEP_ID=0 ALLINEA_PAPI_CONFIG=/usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/map/metrics/papi/PAPI.config XTPE_NETWORK_TARGET=aries ATP_IGNORE_SIGTERM=1 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/lib64 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 SLURM_NODEID=0 PE_FFTW_DEFAULT_TARGET_ivybridge=ivybridge PE_FFTW_DEFAULT_TARGET_share=share PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 SLURM_TASK_PID=87224 PE_TRILINOS_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 FEAP_DIR=/global/homes/m/madams/olympus-keaveny/Feap75_Olympus PRGENVMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pgi PKG_CONFIG_PATH_DEFAULT=/opt/cray/pe/papi/5.7.0.2/lib64/pkgconfig PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 PE_LIBSCI_OMP_REQUIRES= PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=82 71 SSH_CONNECTION=128.55.210.214 38382 128.55.209.23 22 PE_MPICH_NV_LIBS_nvidia35=-lcudart CRAY_NUM_COOKIES=2 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64=90 LESSCLOSE=lessclose.sh %s %s CRAY_LD_LIBRARY_PATH=/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib:/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/lib64:/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.48__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/lib64:/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib PE_SMA_DEFAULT_DIR_PGI_DEFAULT64=64 ALLINEA_LICENSE_DIR=/global/common/sw/cray/sles15/x86_64/allinea-forge/licenses PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=90 PE_PAPI_DEFAULT_ACCEL_FAMILY_LIBS_nvidia=,-lcupti,-lcudart,-lcuda PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 SLURM_PRIO_PROCESS=0 XKEYSYMDB=/usr/X11R6/lib/X11/XKeysymDB PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/trilinos/12.14.1.0/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig PE_ENV=INTEL PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 CRAY_MPICH2_DIR=/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0 PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=81 71 SLURM_CPU_BIND_VERBOSE=quiet PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 PE_PRODUCT_LIST=CRAYPE_HASWELL:CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:CRAYPE:INTEL:HUGETLB2M PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.1.1-7.0.1.1_4.48__g38cf134.ari/include -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.24__g3b1768f.ari/include LIBGL_ALWAYS_INDIRECT=1 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 HUGETLB_DEFAULT_PAGE_SIZE=2M PE_NETCDF_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 DDT_LINK_DMALLOCTH=-L/usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/lib/64 -ldmallocth PE_LIBSCI_MODULE_NAME=cray-libsci/19.06.1 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=9.0 TZ=US/Pacific PE_MPICH_DEFAULT_DIR_CRAYCLANG_DEFAULT64=64 SLURM_SUBMIT_DIR=/global/u2/m/madams/petsc_install/petsc PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 PE_MPICH_CXX_PKGCONFIG_LIBS=mpichcxx PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell=82 71 WINDOWMANAGER=/usr/bin/gnome PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 LESS=-M -I -R PE_LIBSCI_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/petsc/3.11.2.0/complex/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig DISPLAY=mom2:11.0 JAVA_ROOT=/usr/lib64/jvm/java HOSTNAME=cori08 PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 OLDPWD=/global/homes/m/madams PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=82 71 CSHEDIT=emacs PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 SLURM_STEPID=0 SLURM_SRUN_COMM_HOST=10.128.5.222 CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include -I/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include -I/opt/cray-hss-devel/9.0.0/include PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/19.06.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig GPG_TTY=/dev/pts/0 LESS_ADVANCED_PREPROCESSOR=no PE_MPICH_DIR_CRAY_DEFAULT64=64 PE_MPICH_GENCOMPS_CRAY=90 PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 DEBUG=1 COLORTERM=1 ZAP_LIBPATH=/opt/ovis/lib64/ovis-lib DVS_MAXNODES=1__ PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PETSC_ARCH=arch-cori-knl-opt-intel PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU FPATH=:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/19.06.1/@PRGENV@64/@PE_TPSL_64_DEFAULT_GENCOMPS@/@PE_TPSL_64_DEFAULT_TARGET@/lib/pkgconfig SLURM_SPANK_NERSC_ZONESORT_INTERVAL=0 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL ZLIB_ROOT=/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 ZLIB_LIBDIR=/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/lib JAVA_HOME=/usr/lib64/jvm/java PE_LIBSCI_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_FFTW_DEFAULT_TARGET_x86_skylake=x86_skylake PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 SLURM_PROCID=0 PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.10/gni/mpich-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig SLURM_JOB_GID=1013302 MACHTYPE=x86_64-suse-linux PE_FFTW_DEFAULT_TARGET_broadwell=broadwell SLURM_CPU_BIND=quiet,mask_cpu:0xFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF ALTD_WORKDIR=/global/cscratch1/altd/logs PE_PAPI_DEFAULT_ACCEL_LIBS= PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 SLURMD_NODENAME=nid02470 PE_HDF5_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 PE_SMA_DEFAULT_COMPFLAG= PE_PKGCONFIG_PRODUCTS=PE_HUGEPAGES:PE_MPICH:PE_LIBSCI PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.10/CRAY/8.6/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 CRAY_MPICH_BASEDIR=/opt/cray/pe/mpt/7.7.10/gni PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 HUGETLB_VERBOSE=0 PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=190 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_sandybridge=190 SSH_AUTH_SOCK=/tmp/ssh-rcgkvcwfmG/agent.36979 PE_LIBSCI_GENCOMPILERS_GNU_x86_64=8.1 7.1 MINICOM=-c on DVS_VERSION=0.9.0 HUGETLB_MORECORE_HEAPBASE=10000000000 SLURM_TASKS_PER_NODE=272 XGC_INSTALL_DIR=/project/projectdirs/m499/Software/petsc/master/cori_haswell/intel DDT_LINK_DMALLOCXX=-L/usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/lib/64 -ldmallocxx PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU= PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_ALTERNATE_LIBS_@multithreaded@:PE_MPICH_ALTERNATE_LIBS_@dpm@ PE_MPICH_PKGCONFIG_LIBS=mpich SILO_DIR=/global/homes/m/madams/olympus-keaveny/silo-4.10.2-bsd PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL QT_SYSTEM_DIR=/usr/share/desktop-data OSTYPE=linux ATP_MRNET_COMM_PATH=/opt/cray/pe/atp/2.1.3/libexec/atp_mrnet_commnode_wrapper PE_MPICH_NV_LIBS= PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 CRAY_PRGENVINTEL=loaded PE_FFTW2_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=82 71 XDG_SESSION_ID=2587 PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI USER=madams SLURM_NNODES=1 SLURM_LAUNCH_NODE_IPADDR=10.128.5.222 PAGER=less PE_NETCDF_DEFAULT_GENCOMPS_GNU= MODULE_VERSION=3.2.11.4 PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5/1.10.5.2/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/lib64 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 MAN_POSIXLY_CORRECT=1 SHMEM_ABORT_ON_ERROR=1 PE_PKG_CONFIG_PATH=/opt/cray/pe/valgrind4hpc/2.6.4/lib/pkgconfig:/opt/cray/pe/cti/1.0.9/lib/pkgconfig:/opt/cray/pe/cti/1.0.7/lib/pkgconfig:/opt/cray/pe/cti/2.6.6/lib/pkgconfig PE_CRAYCLANG_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/CRAYCLANG/9.0/lib/pkgconfig PE_MPICH_DEFAULT_GENCOMPILERS_CRAY=9.0 TOOLMODULES=apprentice:apprentice2:atp:chapel:cray-lgdb:cray-snplauncher:craypat:craypkg-gen:ddt:gdb:iobuf:papi:perftools:perftools-lite:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.12_2.2.156-7.0.1.1_8.9__g5aab709e/include PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH SLURM_STEP_TASKS_PER_NODE=1 CRAY_COOKIES=2287009792,2638348288 PE_LIBSCI_GENCOMPILERS_INTEL_x86_64=16.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 CRAY_CPU_TARGET=haswell PE_GA_DEFAULT_GENCOMPS_GNU=82 73 PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/mpt/7.7.10/gni/mpich-INTEL/16.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.10/INTEL/18.0/lib/pkgconfig KSH_AUTOLOAD=1 PE_LIBSCI_VOLATILE_PRGENV=CRAY CRAYCLANG GNU INTEL PE_SMA_DEFAULT_PKGCONFIG_VARIABLES=PE_SMA_COMPFLAG_@prgenv@ PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 PKGCONFIG_ENABLED=1 CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/lib64 PMI_CONTROL_PORT=63827 MORE=-sl PE_MPICH_GENCOMPS_GNU=82 81 71 PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda PE_FORTRAN_PKGCONFIG_LIBS=mpichf90 PE_MPICH_DEFAULT_GENCOMPILERS_CRAYCLANG=9.0 PE_TRILINOS_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 LAND_INC=-DHAVE_VTUNE -I/include -I/include PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 PE_MPICH_GENCOMPILERS_CRAY=9.0 INTEL_MAJOR_VERSION=19 CRAY_LIBSCI_BASE_DIR=/opt/cray/pe/libsci/19.06.1 PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64=64 ALLINEA_CONFIG_DIR=/global/homes/m/madams/.allinea/cori PWD=/global/homes/m/madams/petsc_install/petsc TARGETMODULES=craype-abudhabi:craype-abudhabi-cu:craype-accel-host:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-broadwell:craype-haswell:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages32M:craype-hugepages4M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-intel-knc:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-mc12:craype-mc8:craype-mic-knl:craype-network-aries:craype-network-gemini:craype-network-infiniband:craype-network-none:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon PE_MPICH_NV_LIBS_nvidia20=-lcudart PAT_RT_HWPC=1 SLURM_JOB_NODELIST=nid02470 HOME=/global/homes/m/madams CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pe/pmi/5.0.14/include PE_HUGEPAGES_PKGCONFIG_VARIABLES=PE_HUGEPAGES_TEXT_SEGMENT:PE_HUGEPAGES_PAGE_SIZE SLURM_CLUSTER_NAME=cori PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 PELOCAL_PRGENV=true PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 NERSC_HOST=cori PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH craype_already_loaded=0 ATP_HOME=/opt/cray/pe/atp/2.1.3 intel_already_loaded=0 GIT_PS1_SHOWDIRTYSTATE=1 SLURM_NODELIST=nid02470 HOST=cori08 SSH_CLIENT=128.55.210.214 38382 22 ALT_LINKER=/global/common/cori/software/altd/2.0/bin/ld ALTD_VERBOSE=0 PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_TPSL PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 XNLSPATH=/usr/share/X11/nls PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 CPATH=/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/include PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU=8.2 7.3 HUGETLB_MORECORE=yes PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge=90 PE_MPICH_DEFAULT_GENCOMPS_CRAY=90 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 SLURM_UMASK=0007 SDK_HOME=/usr/lib64/jvm/java PE_LIBSCI_OMP_REQUIRES_openmp=_mp SLURM_JOB_CPUS_PER_NODE=272 BASH_ENV=/global/homes/m/madams/.bashrc DDT_NO_TIMEOUT=1 XDG_DATA_DIRS=/usr/share PE_CXX_PKGCONFIG_LIBS=mpichcxx SLURM_TOPOLOGY_ADDR=s34.s5.nid02470 ALLINEA_TOOLS_DIR=/usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/.. INTEL_MINOR_VERSION=19 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_haswell=190 SVN_EDITOR=vim CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -lrca PE_MPICH_MODULE_NAME=cray-mpich PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=90 LIBGL_DEBUG=quiet CRAY_LIBSCI_DIR=/opt/cray/pe/libsci/19.06.1 NLSPATH=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/locale/%l_%t/%N PMI_CRAY_NO_SMP_ORDER=0 SLURM_WORKING_CLUSTER=cori:ctl1:6817:8960:108 DDT_LINK_DMALLOC=-L/usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/lib/64 -ldmalloc PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU= PE_LIBSCI_DEFAULT_OMP_REQUIRES= PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/19.06.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig JDK_HOME=/usr/lib64/jvm/java PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_MPICH_TARGET_VAR_nvidia35=-lcudart PE_HDF5_DEFAULT_GENCOMPS_GNU= PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 SLURM_STEP_NODELIST=nid02470 LIBSCI_VERSION=19.06.1 ZLIB_INC=/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/include LAND_LIB=-L/lib64 -littnotify SLURM_JOB_NAME=sh CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf/4.6.3.2/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig SLURM_SRUN_COMM_PORT=45505 PROFILEREAD=true TMPDIR=/tmp PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAYCLANG GNU INTEL LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 PYTHON_DIR=/usr/common/software/python/3.7-anaconda-2019.10 PE_MPICH_DEFAULT_GENCOMPILERS_GNU=8.2 8.1 7.1 PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp PE_PKGCONFIG_LIBS=craype-hugepages:mpich:AtpSigHandler:cray-rca:libsci_mpi:libsci SLURM_JOBID=32423084 RCLOCAL_PRGENV=true PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 USERMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:acml:alps:apprentice:apprentice2:atp:blcr:cce:chapel:cray-ccdb:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-lgdb:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-compat:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-snplauncher:cray-tpsl:cray-trilinos:craypat:craype:craypkg-gen:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:perftools-lite:petsc:petsc-complex:pgi:pmi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview LDMSD_PLUGIN_LIBPATH=/opt/ovis/lib64/ovis-ldms XGC_PLATFORM=cori_haswell PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 PE_MPICH_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.10/gni/mpich-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig LOADEDMODULES=modules/3.2.11.4:altd/2.0:intel/19.0.3.199:craype-network-aries:craype/2.6.2:cray-libsci/19.06.1:udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari:ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari:pmi/5.0.14:dmapp/7.1.1-7.0.1.1_4.48__g38cf134.ari:gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari:xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari:job/2.2.4-7.0.1.1_3.36__g36b56f4.ari:dvs/2.12_2.2.156-7.0.1.1_8.9__g5aab709e:alps/6.6.58-7.0.1.1_6.4__g437d88db.ari:rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari:atp/2.1.3:PrgEnv-intel/6.0.5:craype-haswell:cray-mpich/7.7.10:craype-hugepages2M:cmake/3.14.4:zlib/1.2.11:python/3.7-anaconda-2019.10:allinea-forge/20.1-Suse-15.0-x86_64:Base-opts/2.4.139-7.0.1.1_4.75__gbb799dd.ari PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 CRAYPE_NETWORK_TARGET=aries GIT_PS1_SHOWUPSTREAM=auto PE_GA_DEFAULT_FIXED_PRGENV=CRAY INTEL CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=190 SCRATCH=/global/cscratch1/sd/madams CFS=/global/cfs/cdirs RCLOCAL_BASEOPTS=true LIBRARYMODULES=acml:alps:cray-dwarf:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-abi:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:libfast:netcdf:netcdf-hdf5parallel:ntk:onesided:papi:petsc:petsc-complex:pmi:tpsl:trilinos:xt-libsci:xt-mpich2:xt-mpt:xt-papi INTEL_LICENSE_FILE=28518@crayintel.licenses.nersc.gov:28518@intel.licenses.nersc.gov PE_MPICH_ALTERNATE_LIBS_dpm=_dpm SLURM_NODE_ALIASES=(null) SLURM_JOB_QOS=interactive SLURM_TOPOLOGY_ADDR_PATTERN=switch.switch.node PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/fftw/3.3.8.4/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=190 SSH_TTY=/dev/pts/102 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64=190 PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=90 MPICH_ABORT_ON_ERROR=1 PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ PE_PAPI_ACCEL_FAMILY_LIBS_@accelerator_family@ ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/pe/atp/2.1.3/libApp/ FROM_HEADER= PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 PE_LIBSCI_GENCOMPS_INTEL_x86_64=160 CRAY_MPICH_ROOTDIR=/opt/cray/pe/mpt/7.7.10 ALPS_APP_PE=0 MAIL=/var/spool/mail/madams PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL PE_MPICH_VOLATILE_PRGENV=GNU CRAYCLANG CRAY PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_INTEL_FIXED_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.10/gni/mpich-INTEL/16.0/lib/pkgconfig SLURM_STEP_RESV_PORTS=63827 SLURM_CPUS_ON_NODE=272 PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL PE_MPICH_ALTERNATE_LIBS_multithreaded=_mt PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=190 PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=82 71 PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_LIBSCI_GENCOMPS_CRAYCLANG_x86_64=90 PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 SLURM_JOB_NUM_NODES=1 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 PE_FFTW_DEFAULT_TARGET_haswell=haswell PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/ga/5.3.0.10/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 LESSKEY=/etc/lesskey.bin CRAY_SITE_LIST_DIR=/etc/opt/cray/pe/modules PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig SHELL=/bin/bash TERM=xterm-256color PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 PE_MPICH_GENCOMPILERS_CRAYCLANG=9.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 CSCRATCH=/global/cscratch1/sd/madams PE_MPICH_FIXED_PRGENV=INTEL PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=90 PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU= PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64=82 71 PMI_NO_FORK=1 SLURM_JOB_UID=13302 CRAY_LIBSCI_VERSION=19.06.1 ALTD_PATH=/global/common/cori/software/altd/2.0 PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 LS_OPTIONS=-N --color=none -T 0 SLURM_JOB_PARTITION=interactive PE_MPICH_DEFAULT_GENCOMPS_GNU=82 81 71 PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/19.06.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME __INTEL_PRE_CFLAGS=-Qlocation,ld,/global/common/cori/software/altd/2.0/bin PE_SMA_DEFAULT_COMPFLAG_GNU=-fcray-pointer PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 SLURM_PTY_WIN_ROW=108 CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/lib64 PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=82 71 ALTD_SELECT_OFF_USERS= SLURM_CPU_BIND_LIST=0xFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.10/gni/sma@PE_SMA_DEFAULT_DIR_DEFAULT64@/lib64/pkgconfig PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 ALTD_ON=1 IPM_REPORT=full ALLINEA_MPIRUN=/usr/bin/srun PE_MPICH_GENCOMPILERS_GNU=8.2 8.1 7.1 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 SLURM_JOB_USER=madams SLURM_PTY_WIN_COL=264 CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.1.1-7.0.1.1_4.48__g38cf134.ari/lib64 PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=160 CRAY_MPICH2_VER=7.7.10 __INTEL_PRE_FFLAGS=-Qlocation,ld,/global/common/cori/software/altd/2.0/bin PE_GA_DEFAULT_GENCOMPILERS_GNU=8.2 7.3 SHLVL=3 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 HUGETLB_FORCE_ELFMAP=yes+ KMP_AFFINITY=balanced SLURM_SUBMIT_HOST=mom2 PYTHONPATH=/opt/mods/lib/python3.6/site-packages:/opt/ovis/lib/python2.7/site-packages ALTD_SELECT_USERS= CRAY_LIBSCI_PREFIX_DIR=/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64 PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL SLURM_JOB_ACCOUNT=m1489 PE_PAPI_DEFAULT_ACCELL_FAMILY_LIBS= ALLINEA_TOOLS_VERSION=20.1-Suse-15.0-x86_64 MANPATH=/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/share/man:/global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/man:/opt/cray/pe/mpt/7.7.10/gni/man/mpich:/opt/cray/pe/atp/2.1.3/man:/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/man:/opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/man:/opt/cray/pe/pmi/5.0.14/man:/opt/cray/pe/libsci/19.06.1/man:/opt/cray/pe/man/csmlversion:/opt/cray/pe/craype/2.6.2/man:/opt/intel/compilers_and_libraries_2019.3.199/linux/man/common:/usr/common/software/man:/usr/common/mss/man:/usr/common/nsg/man:/opt/cray/pe/modules/3.2.11.4/share/man:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/opt/cray/pe/man:/opt/cray/share/man:/opt/cray/share/man PE_FFTW_DEFAULT_TARGET_mic_knl=mic_knl PE_MPICH_DEFAULT_GENCOMPS_CRAYCLANG=90 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=190 ALTD_SELECT_ON=0 INTEL_PATH=/opt/intel/compilers_and_libraries_2019.3.199 ALPS_APP_ID=32423084 INTEL_VERSION=19.0.3.199 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 MPICH_DIR=/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0 PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 SALLOC_IMMEDIATE=360 PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=90 SLURM_STEP_LAUNCHER_PORT=45505 ZLIB=-I/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/include -L/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/lib -lz HUGETLB_ELFMAP=W MODULEPATH=/opt/cray/ari/modulefiles:/opt/cray/pe/craype/2.6.2/modulefiles:/opt/cray/pe/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/global/common/software/nersc/cle7/modulefiles:/global/common/software/nersc/cle7/extra_modulefiles:/usr/common/ftg/modulefiles:/opt/cray/craype/default/modulefiles CRAY_MPICH_DIR=/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0 SLURM_PTY_PORT=37355 PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI SLURM_GTIDS=0 ALLINEA_TOOLS_DOCDIR=/usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/doc LOGNAME=madams DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/13302/bus PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL PE_MPICH_NV_LIBS_nvidia60=-lcudart XDG_RUNTIME_DIR=/run/user/13302 CRAY_PRE_COMPILE_OPTS=-hnetwork=aries PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=190 MODULE_VERSION_STACK=3.2.11.4 MKLROOT=/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5-parallel/1.10.5.2/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 ALLINEA_QUEUE_DLL=/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib/libtvmpich.so.3.0.1 PYTHONUSERBASE=/global/homes/m/madams/.local/cori/3.7-anaconda-2019.10 JRE_HOME=/usr/lib64/jvm/java PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME MPICH_MPIIO_DVS_MAXNODES=28 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 XDG_CONFIG_DIRS=/etc/xdg PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 PE_LIBSCI_GENCOMPS_CRAY_x86_64=90 PE_MPICH_DEFAULT_VOLATILE_PRGENV=GNU CRAYCLANG CRAY PE_MPICH_TARGET_VAR_nvidia20=-lcudart PATH=/usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin:/usr/common/software/python/3.7-anaconda-2019.10/bin:/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin:/global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin:/opt/cray/pe/mpt/7.7.10/gni/bin:/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin:/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin:/opt/cray/alps/default/bin:/opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin:/opt/cray/pe/craype/2.6.2/bin:/opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64:/global/common/cori/software/altd/2.0/bin:/usr/common/software/bin:/usr/common/mss/bin:/usr/common/nsg/bin:/opt/ovis/bin:/opt/ovis/sbin:/opt/cray/pe/modules/3.2.11.4/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/pe/bin JAVA_BINDIR=/usr/lib64/jvm/java/bin SLURM_JOB_ID=32423084 PE_TPSL_64_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 _LMFILES_=/opt/cray/pe/modulefiles/modules/3.2.11.4:/global/common/software/nersc/cle7/extra_modulefiles/altd/2.0:/opt/modulefiles/intel/19.0.3.199:/opt/cray/pe/craype/2.6.2/modulefiles/craype-network-aries:/opt/cray/pe/modulefiles/craype/2.6.2:/opt/cray/pe/modulefiles/cray-libsci/19.06.1:/opt/cray/ari/modulefiles/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari:/opt/cray/ari/modulefiles/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari:/opt/cray/pe/modulefiles/pmi/5.0.14:/opt/cray/ari/modulefiles/dmapp/7.1.1-7.0.1.1_4.48__g38cf134.ari:/opt/cray/ari/modulefiles/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari:/opt/cray/ari/modulefiles/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari:/opt/cray/ari/modulefiles/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari:/opt/cray/ari/modulefiles/dvs/2.12_2.2.156-7.0.1.1_8.9__g5aab709e:/opt/cray/ari/modulefiles/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari:/opt/cray/ari/modulefiles/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari:/opt/cray/pe/modulefiles/atp/2.1.3:/opt/cray/pe/modulefiles/PrgEnv-intel/6.0.5:/opt/cray/pe/craype/2.6.2/modulefiles/craype-haswell:/opt/cray/pe/modulefiles/cray-mpich/7.7.10:/opt/cray/pe/craype/2.6.2/modulefiles/craype-hugepages2M:/global/common/software/nersc/cle7/extra_modulefiles/cmake/3.14.4:/global/common/software/nersc/cle7/extra_modulefiles/zlib/1.2.11:/global/common/software/nersc/cle7/extra_modulefiles/python/3.7-anaconda-2019.10:/global/common/software/nersc/cle7/extra_modulefiles/allinea-forge/20.1-Suse-15.0-x86_64:/opt/modulefiles/Base-opts/2.4.139-7.0.1.1_4.75__gbb799dd.ari SLURM_CPU_BIND_TYPE=mask_cpu: PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 SLURM_STEP_NUM_TASKS=1 DMAPP_ABORT_ON_ERROR=1 MODULESHOME=/opt/cray/pe/modules/3.2.11.4 PKG_CONFIG_PATH=/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/lib/pkgconfig:/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64/pkgconfig:/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/lib64/pkgconfig:/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/lib64/pkgconfig:/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/lib64/pkgconfig:/opt/cray/dmapp/7.1.1-7.0.1.1_4.48__g38cf134.ari/lib64/pkgconfig:/opt/cray/pe/pmi/5.0.14/lib64/pkgconfig:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/lib64/pkgconfig:/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/lib64/pkgconfig:/opt/cray/pe/craype/2.6.2/pkg-config:/opt/cray/pe/iobuf/2.0.9/lib/pkgconfig:/opt/cray/pe/fftw/2.1.5.9/lib/pkgconfig:/opt/cray/pe/atp/2.1.3/lib/pkgconfig LIBSCI_BASE_DIR=/opt/cray/pe/libsci/19.06.1 PETSC_DIR=/global/homes/m/madams/petsc G_BROKEN_FILENAMES=1 HISTSIZE=1000 PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=90 CRAYPE_DIR=/opt/cray/pe/craype/2.6.2 SLURM_JOB_CPUS_PER_NODE_PACK_GROUP_0=272 PE_GA_DEFAULT_VOLATILE_PRGENV=GNU PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=90 PE_MPICH_GENCOMPS_CRAYCLANG=90 PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 SLURM_STEP_NUM_NODES=1 PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_MPICH_DIR_CRAYCLANG_DEFAULT64=64 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_TRILINOS:PE_TPSL_64:PE_TPSL:PE_PETSC:PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_NETCDF:PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_HDF5:PE_GA:PE_FFTW2:PE_FFTW DDT_LINK_DMALLOCTHCXX=-L/usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/lib/64 -ldmallocthcxx CPU=x86_64 CRAYPE_VERSION=2.6.2 CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pe/pmi/5.0.14/lib64 SLURM_LOCALID=0 CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include CVS_RSH=ssh LESSOPEN=lessopen.sh %s OMP_NUM_THREADS=1 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64=190 PE_FFTW_DEFAULT_TARGET_x86_cascadelake=x86_cascadelake PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64=8.1 7.1 PE_LIBSCI_GENCOMPS_GNU_x86_64=81 71 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 BASH_FUNC_module%%=() { eval `/opt/cray/pe/modules/3.2.11.4/bin/modulecmd bash $*` } _=/usr/common/software/python/3.7-anaconda-2019.10/bin/python LC_CTYPE=C.UTF-8 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1732) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1732) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1762) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1762) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1695) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1695) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1716) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1716) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:460) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:460) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:635) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:635) Locate a functional C compiler Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/cc...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/cc...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/cc...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cc...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/cc...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/cc...not found Checking for program /opt/cray/alps/default/bin/cc...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/cc...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/cc...found Defined make macro "CC" to "cc" All intermediate test results are stored in /tmp/petsc-31tiaa71 All intermediate test results are stored in /tmp/petsc-31tiaa71/config.setCompilers Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: cc --version stdout: icc (ICC) 19.0.3.199 20190206 Copyright (C) 1985-2019 Intel Corporation. All rights reserved. ================================================================================ TEST checkCPreprocessor from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:674) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:674) Locate a functional C preprocessor Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/cc...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/cc...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/cc...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cc...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/cc...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/cc...not found Checking for program /opt/cray/alps/default/bin/cc...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/cc...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/cc...found Defined make macro "CPP" to "cc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkCUDACompiler from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:710) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:710) Locate a functional CUDA compiler Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/nvcc...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/nvcc...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/nvcc...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/nvcc...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/nvcc...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/nvcc...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/nvcc...not found Checking for program /opt/cray/alps/default/bin/nvcc...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/nvcc...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/nvcc...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/nvcc...not found Checking for program /global/common/cori/software/altd/2.0/bin/nvcc...not found Checking for program /usr/common/software/bin/nvcc...not found Checking for program /usr/common/mss/bin/nvcc...not found Checking for program /usr/common/nsg/bin/nvcc...not found Checking for program /opt/ovis/bin/nvcc...not found Checking for program /opt/ovis/sbin/nvcc...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/lib/mit/bin/nvcc...not found Checking for program /usr/lib/mit/sbin/nvcc...not found Checking for program /opt/cray/pe/bin/nvcc...not found Checking for program /global/homes/m/madams/petsc_install/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['ddt-mpirun', 'forge', 'ddt', 'perf-report', 'forge-probe', 'map', 'forge-client', 'allinea-client', 'make-profiler-libraries', 'forge-mpirun', 'ddt-client'] ['qmlmin', 'iptest3', 'dask-mpi', 'sdbadmin', 'gss-client', 'cs2cs', 'ristosds', 'fc-scan', 'jupyter-kernel', 'navigator-updater', 'curl-config', 'bzgrep', 'xsltproc', 'jupyter-serverextension', 'lz4', 'runxlrd.py', 'pydoc', 'elbadmin', 'perror', 'dask-remote', 'geos-config', 'fitsheader', 'h5import', 'f2py', 'gif2hdf', 'fc-validate', 'glib-gettextize', 'pycc', 'pal2rgb', 'sqlite3_analyzer', 'sphinx-apidoc', 'uic', 'rst2html5.py', 'lzma', 'xzcmp', 'route53', 'tput', 'gst-discoverer-1.0', 'ncinfo', 'gsettings', 'sip', 'pip', 'hdftopal', 'pydoc3', 'h5mkgrp', 'gio', 'xmlwf', 'pyvenv-3.7', 'bsdtar', 'ncgen', 'tiffcmp', 'icuinfo', 'gencnval', 'pandoc', 'cph', 'ipython', 'xzgrep', 'pyvenv', 'pngfix', 'qmlimportscanner', 'rst2s5.py', 'h5redeploy', 'instance_events', 'ipcluster', 'qdoc', 'qtplugininfo', 'hdfed', 'jupyter-nbconvert', 'makeconv', 'tiffmedian', 'h5debug', 'qhelpgenerator', 'conda-inspect', 'gobject-query', 'conda-build', 'volint', 'toe', 'xml2-config', 'c_rehash', 'protoc', 'pep8', 'qcollectiongenerator', 'nc-config', 'fitsinfo', 'flask', 'hb-view', 'tic', 'kvno', 'lzcat', 'gdbus-codegen', 'conda-env', 'gst-inspect-1.0', 'dbus-send', 'h5c++', 'h5repack', 'wish', 'curve_keygen', 'pytest', 'tiffset', 'xzmore', 'xz', 'pyjson5', 'unlzma', 'unzstd', 'djpeg', 'glib-mkenums', 'fetch_file', 'gunicorn', 'asadmin', 'designer', 'qdbus', 'bokeh', 'dbus-uuidgen', 'sphinx-quickstart', 'infocmp', 'icu-config', 'ipengine', 'jpegtran', 'tiff2pdf', 'rst2html4.py', 'jupyter-bundlerextension', 'gst-typefind-1.0', 'h5cc', 'genbrk', 'klist', 'samp_hub', 'jpeg2hdf', 'pyflakes', 'launch_instance', 'h5stat', 's3put', 'bzfgrep', 'fc-cat', 'h5ls', 'qdbusviewer', 'cairo-trace', 'nad2bin', 'patchelf', 'lzegrep', 'jupyter-labextension', 'rst2pseudoxml.py', 'pandoc-citeproc', 'tiff2rgba', 'pcretest', 'h5copy', 'bzdiff', 'ptrepack', 'mturk', 'lzcmp', 'glib-genmarshal', 'pygmentize', 'fixqt4headers.pl', 'lzmainfo', 'bzless', 'assistant', 'qmllint', 'lss3', 'bzip2recover', 'f2py3.7', 'qmlprofiler', 'dask-scheduler', 'lz4c', 'bsdcat', 'python', 'dynamodb_load', 'imageio_remove_bin', 'cfadmin', 'dbus-monitor', 'rst2odt_prepstyles.py', 'tabulate', 'r8tohdf', 'cwutil', 'conda-convert', 'gif2h5', 'xmllint', 'taskadmin', 'bsdcpio', 'fribidi', 'bzcat', 'rcc', 'curl', 'h5unjam', 'h4redeploy', 'isort', 'tqdm', 'tiff2ps', 'bundle_image', 'dbus-launch', 'gtester', 'anaconda', 'easy_install', 'dask-ssh', 'hdf24to8', 'fc-pattern', 'qgltf', 'pg_config', 'k5srvutil', 'hdfcomp', 'sphinx-autogen', 'anaconda-navigator', 'list_instances', 'python3-config', 'pkgdata', 'dbus-test-tool', 'hrepack', 'fax2ps', 'epylint', 'vshow', 'freetype-config', 'jupyter-migrate', 'rst2man.py', 'cq', 'infotocap', 'tclsh8.6', 'pixeltool', 'reset', 'compile_et', 'xzegrep', 'jupyter-console', 'libpng16-config', 'qmlplugindump', 'xmlpatternsvalidator', 'qwebengine_convert_dict', 'hdftor8', 'tset', 'odbcinst', 'gendict', 'gapplication', 'jupyter-kernelspec', 'pasteurize', 'isql', 'python3.7-config', 'qdbusxml2cpp', 'rst2odt.py', 'jupyter-qtconsole', 'pango-list', 'dask-submit', 'kdestroy', 'dbus-run-session', 'xml2-config.bak', 'gresource', 'bzip2', 'zstd', 'zstdmt', 'h5clear', 'h5diff', 'deactivate', '2to3-3.7', 'gdbus', 'qdbuscpp2xml', 'gst-device-monitor-1.0', 'openssl', 'rg', 'jlpm', 'xslt-config', 'bzcmp', 'unlz4', 'fc-cache', 'bunzip2', 'xmlpatterns', 'sphinx-build', 'pango-view', 'rstpep2html.py', 'gencfu', 'vmake', 'conda-skeleton', 'genrb', 'futurize', 'hdf8to24', 'fc-conflist', 'lzgrep', 'wish8.6', 'qtpaths', 'sclient', 'rdjpgcom', 'hdfls', 'spyder', 'tiffinfo', 'libtool', 'cygdb', 'sim_client', 'qlalr', 'jupyter-troubleshoot', 'h4cc', 'iusql', 'pt2to3', 'wheel', 'jupyter-nbextension', 'mysql_config', 'tabs', 'hdf2jpeg', 'glib-compile-schemas', 'fc-query', 'ncdump', 'invproj', 'conda-metapackage', 'h52gif', 'rst2html.py', 'f2py3', 'nosetests', 'skivi', 'png-fix-itxt', 'libtoolize', 'anaconda-project', 'chardetect', 'nccopy', 'glib-compile-resources', 'tiffdump', 'bzmore', 'qml', 'gtester-report', 'dynamodb_dump', 'lzless', 'h5watch', 'xmlcatalog', 'idle3', 'dbus-daemon', 'jupyter-labhub', 'odbc_config', 'nc3tonc4', 'tiffcp', 'jupyter', 'hdfimport', 'qt.conf', 'showtable', 'py.test', 'gst-stats-1.0', 'python3.7m', 'iptest', 'zstdcat', 'ktutil', 'kinit', 'dbus-cleanup-sockets', 'conda-server', 'canbusutil', 'qmlcachegen', 'lzfgrep', 'cct', 'pttree', 'python3', 'lzmore', 'numba', 'qtattributionsscanner', 'conda-develop', 'pyuic5', 'glacier', 'idle3.7', 'lrelease', 'lzmadec', 'qscxmlc', 'h5fc', 'xzless', 'jsonschema', 'lz4cat', 'hdf2gif', 'wrjpgcom', 'hdp', 'tiffsplit', 'pyrcc5', 'kswitch', 'h5jam', 'ipython3', 'conda-verify', 'qmake', 'nc4tonc3', 'kill_instance', 'moc', 'vba_extract.py', 'ptdump', 'geod', 'hb-shape', 'qtdiag', 'gst-play-1.0', 'krb5-config', 'ppm2tiff', 'pydoc3.7', 'cython', 'python3.7', 'jupyter-notebook', 'uuclient', 'keyring', 'gie', 'pcre-config', 'h5repart', 'hb-subset', 'fax2tiff', 'xzdiff', 'rst2xetex.py', 'h4_ncdump', 'fitscheck', 'pycodestyle', 'clear', 'gst-launch-1.0', 'repc', 'cjpeg', 'h5dump', 'kpasswd', 'xzcat', 'rst2xml.py', 'ipcontroller', 'lconvert', 'activate', 'h5perf_serial', 'sqlite3', 'h5format_convert', 'ksu', 'captoinfo', 'lupdate', 'hdfpack', 'lzdiff', 'dbus-update-activation-environment', 'conda-debug', 'conda-render', 'syncqt.pl', 'pybabel', 'symilar', 'bzegrep', 'pyreverse', 'paltohdf', 'fc-list', 'my_print_defaults', 'xzfgrep', 'tiffdither', 'derb', 'dltest', 'cythonize', 'proj', 'tiffcrop', 'qhelpconverter', 'pkginfo', 'raw2tiff', 'pyami_sendmail', 'fits2bitmap', 'qmltestrunner', 'jupyter-trust', 'python3.7m-config', 'pylint', 'kadmin', 'xzdec', 'isympy', 'qmlscene', 'h4_ncgen', 'rst2latex.py', 'imageio_download_bin', 'binstar', 'jupyter-lab', 'conda-index', 'conda', 'wcslint', 'libpng-config', 'tclsh', 'pylupdate5', 'linguist', 'unxz', 'pcregrep', 'slencheck', 'ncursesw6-config', 'qmleasing', 'fitsdiff', 'gio-querymodules', '2to3', 'hdiff', 'jupyter-run', 'ncgen3', 'hdfunpac', 'tiff2bw', 'hb-ot-shape-closure', 'invgeod', 'dask-worker', 'fc-match'] Warning accessing /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin gives errors: [Errno 2] No such file or directory: '/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin' ['ctest', 'cpack', 'cmake', 'ccmake'] ['cray_mpiio_example_gnuplot.sh', 'cray_mpiio_example_gnuplot_by_ranks.sh', 'cray_mpiio_example_gnuplot_multiplot.sh', 'cray_mpiio_example_gnuplot_summary.sh', 'cray_mpiio_gen_data', 'cray_mpiio_summary'] ['rca-helper', 'rca-hssconfig', 'rca_arpd', 'rca_send_booted'] ['apinit', 'apinit_rca_notify'] Warning accessing /opt/cray/alps/default/bin gives errors: [Errno 2] No such file or directory: '/opt/cray/alps/default/bin' ['jattach', 'jdetach', 'jkill', 'jsethid', 'jstat', 'jwait'] ['2.25.0.craype.ld', 'CC', 'cc', 'driver', 'ftn'] ['codecov', 'dbmerge', 'fortcom', 'fpp', 'gcore-ia', 'gdb-ia', 'icc', 'icc.cfg', 'icpc', 'icpc.cfg', 'ifort', 'ifort.cfg', 'libcilkrts.so.5', 'loopprofileviewer.csh', 'loopprofileviewer.sh', 'map_opts', 'mcpcom', 'offload_extract', 'profdcg', 'profmerge', 'profmergesampling', 'proforder', 'tselect', 'x86_64-linux.env', 'xiar', 'xiar.cfg', 'xild', 'xild.cfg'] ['check_perm.sh', 'backup.sh', 'crontab.txt', 'pyLD.py', 'ld_db.sh', 'ld', 'get_vasp_inputs.sh', 'hpss_backup.sh', 'aprun_db.sh', 'aprun.save', 'upload_db_lds.sh'] ['usgrsu', 'list-ssh-certs', 'wheres_my_job.py', 'ftp', 'prjdirs', 'tape_stats', 'stripe_large', 'hpss_target_directory_creation.py', 'getnim', 'dirquota', 'meshcoords', 'lmstat', 'fixdots2', 'take', 'find_and_kill', 'check-mpi.cce.cori', 'bbcp', 'mk_pip_cabundle.sh', 'nids_to_ranges', 'sw_support', 'stripe_medium', 'lspkg', 'fix_perms', 'gperf', 'fix_usg', 'burp', 'emptydots', 'hpss_file_sorter.script', 'check-mpi.intel.cori', 'sqs1', 'prjbdirs', 'linkinfo.sh', 'stripe_medium.backup', 'hpssquota', 'mods', 'hpss_file_sorter.py', 'o:q!', 'check-hybrid.intel.cori', 'findemptydirs', 'sshproxy.sh', 'check-mpi.gnu.cori', 'sqs.old', 'sqs', 'stripe_large.backup', 'jobstats', 'cmnquota', 'upinter', 'prjquota', 'give', 'pe_changes.py', 'prjaquota', 'sqs.new', 'check_license.sh', 'susw', 'xcmap', 'gen_nodelist.sh', 'svnlook', 'esl.sh', 'fixdots', 'home_over', 'check-hybrid.gnu.cori', 'hpss_file_sorter.py~', 'nc', 'stripe_small.backup', 'static_linking_ddt_md_th', 'swcats', 'nedit', 'check-hybrid.cce.cori', 'iris', 'stripe_small', 'dotmgr', 'hold_prjquota', 'home_usage', 'mynersc_wrappers', 'static_linking_ddt_md', 'wheres_my_job.py.bak', 'module_restore.sh', 'tape_order', 'tedi', 'ndots', 'nersc_host', 'cfsquota', 'not_used', 'run-and-watch.sh', 'generate_sorted_list_for_hpss.py', 'cmark', 'findtouch'] ['hsi', 'ftp', 'wfile', '.pftp_client_73', 'obins', '.htar.exe', '.hsi.exe', 'mkhpsstok', 'htar', 'hpss_avail', 'hsi_testcos', 'pftp'] Warning accessing /usr/common/nsg/bin gives errors: [Errno 2] No such file or directory: '/usr/common/nsg/bin' ['envldms.sh', 'ldms-csv-anonymize', 'ldms-csv-export-sos', 'ldms-l2_test.sh', 'ldms-meminfo.sh', 'ldms-pedigree', 'ldms-plugins.sh', 'ldms-py-rename.sh', 'ldms-py-subset_test.sh', 'ldms-py-syslog.sh', 'ldms-py-varset.sh', 'ldms-static-test.sh', 'ldms_ban.sh', 'ldms_local_opa2test.sh', 'ldmsd_controller', 'lmq', 'lsdate', 'ods_dump', 'sos-db', 'sos-import-csv', 'sos-monitor', 'sos-part', 'sos-schema', 'sos_cmd', 'sos_part_create', 'sos_part_delete', 'sos_part_export', 'sos_part_index', 'sos_part_modify', 'sos_part_move', 'sos_part_query'] ['.ldms-wrapper', 'json_test', 'ldms-aggd', 'ldms_ls', 'ldmsaggctl', 'ldmsctl', 'ldmsd', 'ldmsd_sos_init', 'ldmsd_stream_publish', 'ldmsd_stream_subscribe'] ['add.modules', 'mkroot', 'modulecmd'] [] ['.hmac256.hmac', '411toppm', 'BackGround', 'Backarrow2BackSpace', 'Backarrow2Delete', 'Mail', 'Signature_conversion', 'WebKitWebDriver', 'X', 'X11', 'Xdmx', 'Xephyr', 'Xnest', 'Xorg', 'Xvfb', 'Xvnc', '[', 'a4toa5', 'ac', 'aclocal', 'aclocal-1.15', 'aconnect', 'acpi_validate', 'acpibin', 'acpiexamples', 'acpiexec', 'acpihelp', 'acpinames', 'acpisrc', 'acpixtract', 'activation-client', 'addr2line', 'affixcompress', 'afs5log', 'agentxtrap', 'all_notes_off', 'allcm', 'allec', 'allneeded', 'alsaloop', 'alsamixer', 'alsatplg', 'alsaucm', 'amidi', 'amixer', 'amuFormat.sh', 'analyze', 'annotate', 'ansible', 'ansible-doc', 'ansible-galaxy', 'ansible-playbook', 'ansible-pull', 'ansible-vault', 'ant', 'antRun', 'antlr', 'antlr-config', 'anytopnm', 'aplay', 'aplaymidi', 'appdata2solv', 'applydeltaiso', 'applydeltarpm', 'apropos', 'ar', 'arch', 'arecord', 'arecordmidi', 'arpaname', 'as', 'asciitopgm', 'aseqdump', 'aseqnet', 'asn1Coding', 'asn1Decoding', 'asn1Parser', 'at', 'atktopbm', 'atq', 'atrm', 'attr', 'audit2allow', 'audit2why', 'aulast', 'aulastlog', 'ausyscall', 'autoconf', 'autoexpect', 'autoheader', 'autom4te', 'automake', 'automake-1.15', 'autopoint', 'autoreconf', 'autoscan', 'autoupdate', 'auvirt', 'avstopam', 'awk', 'b2sum', 'base32', 'base64', 'basename', 'bashbug', 'batch', 'bbox', 'bc', 'bdftogd', 'bdftruncate', 'bgp_btoa', 'bibtex', 'binhex.pl', 'bioradtopgm', 'bison', 'blkiomon', 'blkrawverify', 'bmptopnm', 'bmptoppm', 'bno_plot.py', 'bonnie', 'bonobo-activation-run-query', 'bonobo-slay', 'bootctl', 'broadwayd', 'brushtopbm', 'btrecord', 'btreplay', 'btt', 'build-classpath', 'build-classpath-directory', 'build-jar-repository', 'bunzip2', 'busctl', 'busybox', 'busybox.install', 'bwrap', 'bzcat', 'bzcmp', 'bzdiff', 'bzegrep', 'bzfgrep', 'bzgrep', 'bzip2', 'bzip2recover', 'bzless', 'bzmore', 'bznew', 'c++', 'c++filt', 'c3270', 'c_rehash', 'cal', 'call-browser', 'callgrind_annotate', 'callgrind_control', 'cameratopam', 'cancel', 'capinfos', 'captoinfo', 'captype', 'card_eventmgr', 'cardos-tool', 'cat', 'catchsegv', 'catman', 'cc', 'ccmake', 'ccmakedep', 'certtool', 'cg_annotate', 'cg_diff', 'cg_merge', 'chacl', 'chage', 'chardetect', 'chardetect-2.7', 'chardetect-3.6', 'chattr', 'chcat', 'chcon', 'check-binary-files', 'checkmodule', 'checkpolicy', 'chfn', 'chgrp', 'chkconfig', 'chkstat', 'chmem', 'chmod', 'chmorph', 'chooser', 'chown', 'chronyc', 'chroot', 'chrp-addnote', 'chrt', 'chsh', 'chvt', 'ci', 'cifscreds', 'cifsdd', 'cifsiostat', 'cistopbm', 'cksum', 'clamav-config', 'clambc', 'clamconf', 'clamdscan', 'clamdtop', 'clamscan', 'clean-binary-files', 'cleanlinks', 'clear', 'clrunimap', 'clusterdb', 'cmake', 'cmp', 'cmuwmtopbm', 'cnf', 'co', 'col', 'colcrt', 'colrm', 'column', 'combinedeltarpm', 'comm', 'command-not-found', 'compile_et', 'comps2solv', 'convmv', 'corelist', 'cp', 'cpack', 'cpan', 'cpio', 'cpp', 'cpp-7', 'cpupcstat', 'cpupower', 'cray-nvidia-acct', 'cray-nvidia-energy', 'cray-xid-logger', 'crc32', 'create-jar-links', 'createdb', 'createrepo', 'createrepo_c', 'createuser', 'crontab', 'cryptdir', 'cryptoflex-tool', 'csh', 'csplit', 'ctags', 'ctags-exuberant', 'ctest', 'cups-config', 'cupstestdsc', 'cupstestppd', 'curl', 'curl-config', 'cut', 'cvs', 'cvsbug', 'cvslock', 'cvt', 'cyrus_sasl_sample_client', 'cyrus_sasl_sample_server', 'dasher', 'date', 'db48_archive', 'db48_checkpoint', 'db48_deadlock', 'db48_dump', 'db48_hotbackup', 'db48_load', 'db48_printlog', 'db48_recover', 'db48_sql', 'db48_stat', 'db48_upgrade', 'db48_verify', 'db_archive', 'db_checkpoint', 'db_deadlock', 'db_dump', 'db_hotbackup', 'db_load', 'db_printlog', 'db_recover', 'db_sql', 'db_stat', 'db_upgrade', 'db_verify', 'dbilogstrip', 'dbiprof', 'dbiproxy', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-launch', 'dbus-launch.nox11', 'dbus-launch.x11', 'dbus-monitor', 'dbus-run-session', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dbwrap_tool', 'dc', 'dconf', 'dd', 'dd_rescue', 'ddbugtopbm', 'deallocvt', 'debinhex.pl', 'decryptdir', 'deltainfoxml2solv', 'delv', 'desktop-file-edit', 'desktop-file-install', 'desktop-file-validate', 'desktop-launch', 'devdump', 'df', 'dialog', 'diff', 'diff-jars', 'diff3', 'diffpp', 'dig', 'dir', 'dircolors', 'dirmngr', 'dirmngr-client', 'dirmngr_ldap', 'dirname', 'disable-paste', 'dislocate', 'display-buttons', 'display-coords', 'dkimsign.pl', 'dkimverify.pl', 'dltest', 'dm_date', 'dm_zdump', 'dmesg', 'dmxaddinput', 'dmxaddscreen', 'dmxinfo', 'dmxreconfig', 'dmxresize', 'dmxrminput', 'dmxrmscreen', 'dmxtodmx', 'dmxwininfo', 'dnie-tool', 'dnsdomainname', 'domainname', 'dos2unix', 'doxygen', 'dracut', 'driverless', 'dropdb', 'dropuser', 'drpmsync', 'dtrace', 'du', 'dump2psl.pl', 'dump2slvl.pl', 'dumpcap', 'dumpkeys', 'dumpsexp', 'dumpsolv', 'dvi2fax', 'dviasm', 'dvibook', 'dviconcat', 'dvidvi', 'dvigif', 'dvilualatex', 'dviluatex', 'dvipdf', 'dvipng', 'dvired', 'dviselect', 'dvisvgm', 'dvitodvi', 'dwp', 'dwz', 'easy_install', 'easy_install-2.7', 'ebrowse', 'echo', 'echo-client-2', 'ecpg', 'ed', 'edit', 'edit-xml-catalog', 'edit-xml-catalog.sh', 'editcap', 'egk-tool', 'egrep', 'egview', 'egvim', 'eidenv', 'eject', 'elfedit', 'emacs', 'emacs-gtk', 'emacs-x11', 'emacsclient', 'embedspu', 'enc2xs', 'encguess', 'encode_keychange', 'enscript', 'enscript.bin', 'env', 'envsubst', 'eog', 'eps2eps', 'epsffit', 'eqn', 'erb', 'erb.ruby2.5', 'escp2topbm', 'espeak', 'etags', 'etex', 'eu-addr2line', 'eu-ar', 'eu-elfcmp', 'eu-elfcompress', 'eu-elflint', 'eu-findtextrel', 'eu-make-debug-archive', 'eu-nm', 'eu-objdump', 'eu-ranlib', 'eu-readelf', 'eu-size', 'eu-stack', 'eu-strings', 'eu-strip', 'eu-unstrip', 'eventlogadm', 'eview', 'evim', 'evince', 'evince-previewer', 'evince-thumbnailer', 'ex', 'expand', 'expect', 'expiry', 'expr', 'extlinux', 'extractres', 'eyuvtoppm', 'f2py', 'f2py2', 'f2py2.7', 'f2py3', 'f2py3.6', 'factor', 'fallocate', 'false', 'fastjar', 'fc-cache', 'fc-cache32', 'fc-cat', 'fc-cat32', 'fc-list', 'fc-list32', 'fc-match', 'fc-match32', 'fc-pattern', 'fc-query', 'fc-scan', 'fc-validate', 'fdupes', 'fetchmail', 'fgconsole', 'fgrep', 'fiascotopnm', 'file', 'file-roller', 'filesize', 'fillup', 'fincore', 'find', 'find-jar', 'findmnt', 'findsmb', 'fips_standalone_hmac', 'fitstopnm', 'fixdlsrps', 'fixfmps', 'fixmacps', 'fixproc', 'fixpsditps', 'fixpspps', 'fixscribeps', 'fixtpps', 'fixwfwps', 'fixwpps', 'fixwwps', 'fiz', 'flask-2.7', 'flex', 'flex++', 'flock', 'fmt', 'fmtutil', 'fmtutil-sys', 'fmtutil-user', 'fold', 'foomatic-rip', 'formail', 'fragiso', 'free', 'freetype-config', 'freshclam', 'fribidi', 'fsfs-access-map', 'fstopgm', 'ftp', 'ftp-rfc', 'funzip', 'funzip-plain', 'fuser', 'fusermount', 'g++', 'g++-7', 'g-ir-annotation-tool', 'g-ir-compiler', 'g-ir-doc-tool', 'g-ir-generate', 'g-ir-inspect', 'g-ir-scanner', 'g13', 'g2r', 'gapplication', 'gawk', 'gcc', 'gcc-7', 'gcc-ar', 'gcc-ar-7', 'gcc-nm', 'gcc-nm-7', 'gcc-ranlib', 'gcc-ranlib-7', 'gccmakedep', 'gconf-editor', 'gconf-merge-tree', 'gconftool-2', 'gconftool-rebuild', 'gcore', 'gcov', 'gcov-7', 'gcov-dump', 'gcov-dump-7', 'gcov-tool', 'gcov-tool-7', 'gd2copypal', 'gd2togif', 'gd2topng', 'gdb', 'gdb-add-index', 'gdbm_dump', 'gdbm_load', 'gdbmtool', 'gdbserver', 'gdbus', 'gdbus-codegen', 'gdcmpgif', 'gdialog', 'gdk-pixbuf-csource', 'gdk-pixbuf-pixdata', 'gdk-pixbuf-query-loaders-64', 'gdm', 'gdm-screenshot', 'gdmflexiserver', 'gdparttopng', 'gdtopng', 'gedi', 'gedit', 'gem', 'gem.ruby2.5', 'gem2rpm', 'gem2rpm-0.10.1', 'gem2rpm.ruby2.5', 'gem2rpm.ruby2.5-0.10.1', 'gemtopbm', 'gemtopnm', 'genDDNSkey', 'gencat', 'gendiff', 'genscript', 'geqn', 'get-versions', 'get_kernel_version', 'getafm', 'getcifsacl', 'getconf', 'getdelays', 'getent', 'getfacl', 'getfattr', 'gethostip', 'getkeycodes', 'getopt', 'gettext', 'gettext.sh', 'gettextize', 'getunimap', 'gex', 'gids-tool', 'giftogd2', 'giftopnm', 'gio', 'gio-querymodules-64', 'git', 'git-new-workdir', 'git-receive-pack', 'git-shell', 'git-upload-archive', 'git-upload-pack', 'git_version.tcl', 'gkbd-keyboard-display', 'glib-compile-resources', 'glib-compile-schemas', 'glib-genmarshal', 'glib-gettextize', 'glib-mkenums', 'gmake', 'gnome', 'gnome-control-center', 'gnome-help', 'gnome-keyring', 'gnome-keyring-3', 'gnome-keyring-daemon', 'gnome-open', 'gnome-session', 'gnome-session-inhibit', 'gnome-session-quit', 'gnome-shell', 'gnome-shell-extension-prefs', 'gnome-terminal', 'gnome-text-editor', 'gnomesu', 'gnomevfs-cat', 'gnomevfs-copy', 'gnomevfs-df', 'gnomevfs-info', 'gnomevfs-ls', 'gnomevfs-mkdir', 'gnomevfs-monitor', 'gnomevfs-mv', 'gnomevfs-rm', 'gnuctags', 'gnuplot', 'gnutls-cli', 'gnutls-cli-debug', 'gnutls-serv', 'gobject-query', 'gouldtoppm', 'gpasswd', 'gpg', 'gpg-agent', 'gpg-connect-agent', 'gpg-error', 'gpg-error-config', 'gpg-wks-server', 'gpg-zip', 'gpg2', 'gpgconf', 'gpgme-tool', 'gpgparsemail', 'gpgrt-config', 'gpgscm', 'gpgsm', 'gpgtar', 'gpgv', 'gpgv2', 'gpm-root', 'gprof', 'grep', 'grepjar', 'gresource', 'groff', 'grog', 'grops', 'grotty', 'groups', 'gs', 'gsbj', 'gsdj', 'gsdj500', 'gsettings', 'gsettings-data-convert', 'gsftopk', 'gslj', 'gslp', 'gsnd', 'gst-device-monitor-1.0', 'gst-discoverer-1.0', 'gst-play-1.0', 'gstack', 'gtbl', 'gtester', 'gtester-report', 'gtf', 'gtk-builder-convert', 'gtk-builder-tool', 'gtk-demo', 'gtk-encode-symbolic-svg', 'gtk-launch', 'gtk-query-immodules-2.0-64', 'gtk-query-immodules-3.0-64', 'gtk-query-settings', 'gtk-update-icon-cache', 'gtk-update-icon-cache-2.0', 'gtk-update-icon-cache-3.0', 'gtk3-demo', 'gtk3-demo-application', 'gtk3-icon-browser', 'gtk3-widget-factory', 'guess_encoding', 'guild', 'guile', 'guile-tools', 'gunicorn', 'gunicorn-2.7', 'gunicorn_paster', 'gunicorn_paster-2.7', 'gunzip', 'gv', 'gv-update-userconfig', 'gvfs-cat', 'gvfs-copy', 'gvfs-info', 'gvfs-less', 'gvfs-ls', 'gvfs-mime', 'gvfs-mkdir', 'gvfs-monitor-dir', 'gvfs-monitor-file', 'gvfs-mount', 'gvfs-move', 'gvfs-open', 'gvfs-rename', 'gvfs-rm', 'gvfs-save', 'gvfs-set-attribute', 'gvfs-trash', 'gvfs-tree', 'gvi', 'gview', 'gvim', 'gvimdiff', 'gvimtutor', 'gzexe', 'gzip', 'h2ph', 'h2xs', 'hardlink', 'hattrib', 'hcd', 'hcopy', 'hdel', 'hdifftopam', 'hdir', 'hdisk.pl', 'head', 'hexdump', 'hformat', 'hipstopgm', 'hls', 'hltest', 'hmac256', 'hmkdir', 'hmount', 'host', 'hostid', 'hostname', 'hostnamectl', 'hpwd', 'hrename', 'hrmdir', 'hugeadm', 'hugectl', 'hugeedit', 'humount', 'hunspell', 'hunzip', 'hvol', 'hwloc-annotate', 'hwloc-assembler', 'hwloc-assembler-remote', 'hwloc-bind', 'hwloc-calc', 'hwloc-compress-dir', 'hwloc-diff', 'hwloc-distances', 'hwloc-distrib', 'hwloc-gather-topology', 'hwloc-info', 'hwloc-ls', 'hwloc-patch', 'hwloc-ps', 'hzip', 'i386', 'iasecc-tool', 'iasl', 'ib_atomic_bw', 'ib_atomic_lat', 'ib_read_bw', 'ib_read_lat', 'ib_send_bw', 'ib_send_lat', 'ib_write_bw', 'ib_write_lat', 'ibdiagnet', 'ibdiagpath', 'ibdmchk', 'ibdmsh', 'ibdmtr', 'ibis', 'ibnlparse', 'ibtopodiff', 'iceauth', 'icesh', 'icesh-lite', 'icewm', 'icewm-lite', 'icewm-session', 'icewm-session-lite', 'icewmbg', 'icewmbg-lite', 'icewmhint', 'icewmhint-lite', 'icontopbm', 'iconv', 'icu-config', 'id', 'ident', 'idl2wrs', 'iecset', 'ifconfig', 'ifnames', 'ilbmtoppm', 'imake', 'imgtoppm', 'includeres', 'info', 'infocmp', 'infotocap', 'infotopam', 'initdb', 'initex', 'initviocons', 'install', 'install-catalog', 'install-catalog.sh', 'install-dtd.sh', 'install-info', 'installation_sources', 'installcheck', 'instmodsh', 'ionice', 'iostat', 'iowatcher', 'ipcmk', 'ipcount', 'ipcrm', 'ipcs', 'ipf-mod.pl', 'ipmitool', 'ippfind', 'ipptool', 'iptab', 'irb', 'irb.ruby2.5', 'isodebug', 'isodump', 'isohybrid', 'isohybrid.pl', 'isoinfo', 'isolinux-config', 'isosize', 'isovfy', 'ispellaff2myspell', 'isql', 'iusql', 'jar', 'jarsigner', 'java', 'javac', 'javadoc', 'javap', 'jbigtopnm', 'jcmd', 'jconsole', 'jdb', 'jdeprscan', 'jdeps', 'jhsdb', 'jimage', 'jinfo', 'jjs', 'jlink', 'jmap', 'jmod', 'join', 'journalctl', 'jpeg2ktopam', 'jpegtopnm', 'jps', 'jq', 'jrunscript', 'jshell', 'json_pp', 'jstack', 'jstat', 'jstatd', 'kbd', 'kbd_mode', 'kbdinfo', 'kbdrate', 'kbxutil', 'kdumpid', 'kernel-install', 'keyctl', 'keygen', 'keytab-lilo', 'keytool', 'kibitz', 'kill', 'killall', 'kinit', 'klist', 'kmod', 'kmp-install', 'koi8rxterm', 'kpseaccess', 'kpsepath', 'kpsereadlink', 'kpsestat', 'kpsetool', 'kpsewhere', 'kpsewhich', 'kpsexpand', 'ksh', 'lacheck', 'last', 'lastb', 'lastcomm', 'lastlog', 'latex', 'ld', 'ld.bfd', 'ldapadd', 'ldapcompare', 'ldapdelete', 'ldapexop', 'ldapmodify', 'ldapmodrdn', 'ldappasswd', 'ldapsearch', 'ldapurl', 'ldapwhoami', 'ldd', 'leaftoppm', 'less', 'lessclose.sh', 'lessecho', 'lesskey', 'lessopen.sh', 'lex', 'lexgrog', 'lfs', 'lfs_migrate', 'lftp', 'lftp_wrapper', 'lftpget', 'libgcrypt-config', 'libnetcfg', 'libpng-config', 'libpng16-config', 'libtool', 'libtoolize', 'linc-cleanup-sockets', 'line', 'link', 'linux32', 'linux64', 'lispmtopgm', 'lksh', 'ln', 'lndir', 'lnstat', 'loadkeys', 'loadmof.sh', 'loadunimap', 'locale', 'localectl', 'localedef', 'locate', 'lockfile', 'logger', 'loginctl', 'logname', 'lognormalizer', 'look', 'lp', 'lpoptions', 'lpq', 'lpr', 'lprm', 'lprsetup.sh', 'lpstat', 'lpunlock', 'ls', 'lsar', 'lsattr', 'lsb-release', 'lsb_release', 'lsblk', 'lscpu', 'lsdev', 'lsinitrd', 'lsipc', 'lslocks', 'lslogins', 'lsmem', 'lsmod', 'lsns', 'lsof', 'lss16toppm', 'lsscsi', 'lstopo', 'lstopo-no-graphics', 'lsusb', 'lsusb.py', 'ltrace', 'lua', 'lua5.3', 'luac', 'luac5.3', 'luajittex', 'lualatex', 'luaotfload-tool', 'luatex', 'luit', 'luitx', 'lwp-download', 'lwp-dump', 'lwp-mirror', 'lwp-request', 'lz', 'lz4', 'lz4c', 'lz4cat', 'lzcat', 'lzcmp', 'lzdiff', 'lzegrep', 'lzfgrep', 'lzgrep', 'lzless', 'lzma', 'lzmadec', 'lzmainfo', 'lzmore', 'm17n-db', 'm4', 'mac2unix', 'macptopbm', 'mail', 'mailq', 'mailstat', 'mailx', 'make', 'make_method', 'makealias', 'makedeltaiso', 'makedeltarpm', 'makedepend', 'makedumpfile', 'makedumpfile-R.pl', 'makeg', 'makeindex', 'makeinfo', 'man', 'mandb', 'manpath', 'manweb', 'mapscrn', 'mariadb_config', 'mattrib', 'mbadblocks', 'mcat', 'mcd', 'mcheck', 'mclasserase', 'mcomp', 'mcookie', 'mcopy', 'md5pass', 'md5sum', 'mdatopbm', 'mdel', 'mdeltree', 'mdig', 'mdir', 'mdu', 'memdiskfind', 'memhog', 'memkind-hbw-nodes', 'merge', 'merge-pciids', 'mergecap', 'mergelib', 'mergerepo', 'mergerepo_c', 'mergesolv', 'mesg', 'mev', 'mformat', 'mgrtopbm', 'migratepages', 'migspeed', 'minfo', 'mk_cmds', 'mkafmmap', 'mkdir', 'mkdirhier', 'mkdiskimage', 'mkfifo', 'mkfontdir', 'mkfontscale', 'mkhtmlindex', 'mkhybrid', 'mkindex', 'mkinfodir', 'mkisofs', 'mkmanifest', 'mknod', 'mkocp', 'mkofm', 'mkpasswd', 'mksh', 'mksquashfs', 'mktemp', 'mktexfmt', 'mktexlsr', 'mktexmf', 'mktexpk', 'mktextfm', 'mkzftree', 'mkzimage_cmdline', 'mlabel', 'mmd', 'mmdbresolve', 'mmount', 'mmove', 'mmroff', 'modhash', 'modifyrepo', 'modifyrepo_c', 'modsign-verify', 'mof_compiler', 'mof_compiler-2.7', 'mof_compiler-3.6', 'more', 'mount', 'mountpoint', 'mouse-test', 'mpartition', 'mpi-selector', 'mpi-selector-menu', 'mpicalc', 'mpstat', 'mrd', 'mren', 'mrftopbm', 'ms_print', 'msgattrib', 'msgcat', 'msgcmp', 'msgcomm', 'msgconv', 'msgen', 'msgexec', 'msgfilter', 'msgfmt', 'msggrep', 'msginit', 'msgmerge', 'msgunfmt', 'msguniq', 'mshortname', 'mshowfat', 'mstconfig', 'mstflint', 'mstfwreset', 'mstmcra', 'mstmread', 'mstmtserver', 'mstmwrite', 'mstregdump', 'mstvpd', 'mtools', 'mtoolstest', 'mtvtoppm', 'mtype', 'multixterm', 'munch', 'munge', 'mutt', 'mutter', 'mv', 'mvxattr', 'mxtar', 'mydvichk', 'myquota', 'mysql', 'mysql_config', 'mysqladmin', 'mysqlcheck', 'mysqld_safe_helper', 'mysqldump', 'mysqlimport', 'mysqlshow', 'mzip', 'namei', 'nc', 'ncurses6-config', 'ncursesw6-config', 'neotoppm', 'neqn', 'net', 'net-server', 'net-snmp-cert', 'net-snmp-config', 'net-snmp-create-v3-user', 'netaddr-2.7', 'netcat', 'netkey-tool', 'netstat', 'newaliases', 'newgidmap', 'newgrp', 'newuidmap', 'ngettext', 'nice', 'nisdomainname', 'nl', 'nm', 'nmap', 'nmblookup', 'nmbstatus', 'nohup', 'notify-send', 'npa-tool', 'nproc', 'nroff', 'nsenter', 'nslookup', 'nstat', 'nsupdate', 'ntlm_auth', 'numactl', 'numademo', 'numastat', 'numfmt', 'nvidia-bug-report.sh', 'nvidia-cuda-mps-control', 'nvidia-cuda-mps-server', 'nvidia-debugdump', 'nvidia-persistenced', 'nvidia-settings', 'nvidia-smi', 'nvidia-xconfig', 'oLschema2ldif', 'objcopy', 'objdump', 'oci-image-tool', 'ocount', 'ocsptool', 'od', 'odbc_config', 'odbcinst', 'odd2even', 'ofl', 'oid2name', 'old', 'op-check-perfevents', 'opannotate', 'oparchive', 'openpgp-tool', 'opensc-asn1', 'opensc-explorer', 'opensc-notify', 'opensc-tool', 'openssl', 'openvt', 'operf', 'opgprof', 'ophelp', 'opimport', 'opjitconv', 'opreport', 'oprofile_map_events.pl', 'oprofile_start.sh', 'outpsfheader', 'over', 'p11-kit', 'p11tool', 'pack200', 'pagesize', 'palmtopnm', 'pamaddnoise', 'pamarith', 'pambackground', 'pambayer', 'pamchannel', 'pamcomp', 'pamcrater', 'pamcut', 'pamdeinterlace', 'pamdepth', 'pamdice', 'pamditherbw', 'pamedge', 'pamendian', 'pamenlarge', 'pamexec', 'pamfile', 'pamfix', 'pamfixtrunc', 'pamflip', 'pamfunc', 'pamgauss', 'pamgradient', 'pamlookup', 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'unrar', 'unrar_wrapper', 'unshar', 'unshare', 'unsquashfs', 'unxz', 'unzip', 'unzip-plain', 'unzipsfx', 'unzipsfx-plain', 'update-desktop-database', 'update-mime-database', 'update-xml-catalog', 'updatedb', 'updateinfoxml2solv', 'updmap', 'updmap-sys', 'updmap-user', 'uptime', 'urlgrabber', 'usb-devices', 'usbhid-dump', 'users', 'ustar', 'utmpdump', 'uudecode', 'uuencode', 'uuidgen', 'uuidparse', 'uxterm', 'uz', 'vacuumdb', 'vacuumlo', 'valgrind', 'valgrind-di-server', 'valgrind-listener', 'vdir', 'vdltodmx', 'verify_blkparse', 'vgdb', 'vi', 'view', 'vim', 'vim-nox11', 'vimdiff', 'vimtutor', 'vitmp', 'vlock', 'vmstat', 'vncconfig', 'vncpasswd', 'vncpasswd.arg', 'vncserver', 'vttest', 'vtysh', 'w', 'w3m', 'w3mman', 'wall', 'watch', 'watchgnupg', 'wayland-scanner', 'wbemai', 'wbemain', 'wbemcat', 'wbemci', 'wbemcli', 'wbemcli.py', 'wbemcli.py-2.7', 'wbemcli.py-3.6', 'wbemcm', 'wbemcmx', 'wbemdc', 'wbemdi', 'wbemec', 'wbemecn', 'wbemei', 'wbemein', 'wbemgc', 'wbemgcd', 'wbemgi', 'wbemgp', 'wbemmi', 'wbemri', 'wbemrin', 'wbemsp', 'wbinfo', 'wbmptopbm', 'wc', 'wdctl', 'webpng', 'westcos-tool', 'wget', 'whatis', 'whereis', 'which', 'who', 'whoami', 'whois', 'widget', 'winicontopam', 'winicontoppm', 'wish', 'wish8.6', 'wmidump', 'wmixtract', 'wordforms', 'wordlist2hunspell', 'write', 'x026', 'x0vncserver', 'x3270', 'x3270if', 'x86_64', 'x86_64-suse-linux-gnu-pkg-config', 'x86_energy_perf_policy', 'xargs', 'xauth', 'xbmtopbm', 'xconsole', 'xdg-desktop-icon', 'xdg-desktop-menu', 'xdg-email', 'xdg-icon-resource', 'xdg-mime', 'xdg-open', 'xdg-screensaver', 'xdg-settings', 'xdg-su', 'xdg-terminal', 'xdg_menu', 'xdg_menu_su', 'xdm', 'xdmxconfig', 'xf86debug', 'xgettext', 'xhost', 'xid_logger.sh', 'ximtoppm', 'xinit', 'xkbcomp', 'xkibitz', 'xli', 'xlito', 'xloadimage', 'xmessage', 'xmkmf', 'xml2-config', 'xml_grep', 'xml_merge', 'xml_pp', 'xml_spellcheck', 'xml_split', 'xmlcatalog', 'xmllint', 'xmltest', 'xmlwf', 'xmodmap', 'xorg-backtrace', 'xpath', 'xpmtoppm', 'xprop', 'xpstat', 'xrdb', 'xscreensaver', 'xscreensaver-command', 'xscreensaver-demo', 'xscreensaver-gl-helper', 'xset', 'xsetbg', 'xsetroot', 'xslt-config', 'xsltproc', 'xsubpp', 'xterm', 'xtermset', 'xview', 'xvminitoppm', 'xwdtopnm', 'xxd', 'xz', 'xzcat', 'xzcmp', 'xzdec', 'xzdiff', 'xzegrep', 'xzfgrep', 'xzgrep', 'xzless', 'xzmore', 'xznew', 'yacc', 'yat2m', 'ybmtopbm', 'yelp', 'yes', 'ypcat', 'ypchfn', 'ypchsh', 'ypdomainname', 'ypmatch', 'yppasswd', 'ypwhich', 'yuvsplittoppm', 'yuvtoppm', 'yuy2topam', 'yzpper', 'zcat', 'zcmp', 'zdiff', 'zegrep', 'zeisstopnm', 'zenity', 'zfgrep', 'zforce', 'zgrep', 'zip', 'zipcloak', 'zipdetails', 'zipgrep', 'zipgrep-plain', 'zipinfo', 'zipnote', 'zipsplit', 'zless', 'zmore', 'znew', 'zoo', 'zsh', 'zypp-CheckAccessDeleted', 'zypp-NameReqPrv', 'zypper'] ['arch', 'awk', 'basename', 'bash', 'blkparse', 'blktrace', 'btrace', 'cat', 'chgrp', 'chmod', 'chown', 'chvt', 'clrunimap', 'cp', 'cpio', 'csh', 'date', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-monitor', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dd', 'dd_rescue', 'deallocvt', 'df', 'dmesg', 'dnsdomainname', 'domainname', 'dumpkeys', 'echo', 'ed', 'egrep', 'ex', 'false', 'fgconsole', 'fgrep', 'fillup', 'find', 'findmnt', 'fsync', 'fuser', 'gawk', 'getkeycodes', 'getunimap', 'grep', 'guess_encoding', 'gunzip', 'gzip', 'hostname', 'ifconfig', 'initviocons', 'ip', 'kbd_mode', 'kbdinfo', 'kbdrate', 'keyctl', 'kill', 'ksh', 'lksh', 'ln', 'loadkeys', 'loadunimap', 'logger', 'login', 'ls', 'lsblk', 'lsmod', 'mail', 'mapscrn', 'md5sum', 'mkdir', 'mknod', 'mksh', 'mktemp', 'more', 'mount', 'mv', 'netstat', 'nisdomainname', 'openvt', 'outpsfheader', 'pdksh', 'pgrep', 'pidof', 'ping', 'ping6', 'pkill', 'ps', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'pwd', 'readlink', 'resizecons', 'rm', 'rmdir', 'route', 'rpm', 'screendump', 'sed', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setvesablank', 'setvtrgb', 'sh', 'showconsolefont', 'showkey', 'sleep', 'sort', 'spawn_console', 'spawn_login', 'stat', 'stty', 'su', 'sync', 'systemctl', 'systemd', 'systemd-ask-password', 'tar', 'tcsh', 'touch', 'tracepath', 'tracepath6', 'true', 'umount', 'uname', 'unicode_start', 'unicode_stop', 'usleep', 'vi', 'vim', 'ypdomainname', 'zcat', 'zsh'] ['gss-client', 'k5srvutil', 'kadmin', 'kdestroy', 'kinit', 'klist', 'kpasswd', 'krb5-config', 'ksu', 'kswitch', 'ktutil', 'kvno', 'sclient', 'sim_client', 'uuclient'] ['krb5-send-pr'] ['csmlversion', 'pe_cleanup_callback.sh', 'pe_postmount_callback.sh', 'pe_setup_callback.sh', 'set-gcc-libs', 'set_default', 'setup_shell_rcs.sh'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /global/homes/m/madams/petsc_install/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /global/homes/m/madams/petsc_install/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:750) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:750) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:849) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:849) Locate a functional Cxx compiler Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/CC...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/CC...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/CC...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/CC...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/CC...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/CC...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/CC...not found Checking for program /opt/cray/alps/default/bin/CC...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/CC...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/CC...found Defined make macro "CXX" to "CC" Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.setCompilers/conftest /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.setCompilers/conftest /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: CC --version stdout: icpc (ICC) 19.0.3.199 20190206 Copyright (C) 1985-2019 Intel Corporation. All rights reserved. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:890) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:890) Locate a functional Cxx preprocessor Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/CC...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/CC...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/CC...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/CC...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/CC...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/CC...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/CC...not found Checking for program /opt/cray/alps/default/bin/CC...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/CC...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/CC...found Defined make macro "CXXPP" to "CC -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: CC -E -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkFortranCompiler from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:991) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:991) Locate a functional Fortran compiler Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/ftn...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/ftn...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/ftn...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/ftn...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/ftn...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/ftn...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/ftn...not found Checking for program /opt/cray/alps/default/bin/ftn...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/ftn...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ftn...found Defined make macro "FC" to "ftn" Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.setCompilers/conftest /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.setCompilers/conftest /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: ftn --version stdout: ifort (IFORT) 19.0.3.199 20190206 Copyright (C) 1985-2019 Intel Corporation. All rights reserved. ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1028) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1028) Locate a functional Fortran preprocessor Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/ftn...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/ftn...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/ftn...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/ftn...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/ftn...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/ftn...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/ftn...not found Checking for program /opt/cray/alps/default/bin/ftn...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/ftn...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ftn...found Defined make macro "FPP" to "ftn -E" Deleting "FPP" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/ftn...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/ftn...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/ftn...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/ftn...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/ftn...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/ftn...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/ftn...not found Checking for program /opt/cray/alps/default/bin/ftn...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/ftn...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ftn...found Defined make macro "FPP" to "ftn --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1050) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1050) Make sure fortran comment "!" works Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1181) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1181) ================================================================================ TEST checkArchiver from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1280) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1280) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 15) 2.32.0.20190909-6.8 Copyright (C) 2019 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 15) 2.32.0.20190909-6.8 Copyright (C) 2019 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/ar...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/ar...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/ar...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/ar...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/ar...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/ar...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/ar...not found Checking for program /opt/cray/alps/default/bin/ar...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/ar...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ar...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/ar...not found Checking for program /global/common/cori/software/altd/2.0/bin/ar...not found Checking for program /usr/common/software/bin/ar...not found Checking for program /usr/common/mss/bin/ar...not found Checking for program /usr/common/nsg/bin/ar...not found Checking for program /opt/ovis/bin/ar...not found Checking for program /opt/ovis/sbin/ar...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/ranlib...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/ranlib...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/ranlib...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/ranlib...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/ranlib...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/ranlib...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/ranlib...not found Checking for program /opt/cray/alps/default/bin/ranlib...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/ranlib...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ranlib...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/ranlib...not found Checking for program /global/common/cori/software/altd/2.0/bin/ranlib...not found Checking for program /usr/common/software/bin/ranlib...not found Checking for program /usr/common/mss/bin/ranlib...not found Checking for program /usr/common/nsg/bin/ranlib...not found Checking for program /opt/ovis/bin/ranlib...not found Checking for program /opt/ovis/sbin/ranlib...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-31tiaa71/config.setCompilers/libconf1.a /tmp/petsc-31tiaa71/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /tmp/petsc-31tiaa71/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 15) 2.32.0.20190909-6.8 Copyright (C) 2019 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 15) 2.32.0.20190909-6.8 Copyright (C) 2019 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/ar...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/ar...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/ar...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/ar...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/ar...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/ar...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/ar...not found Checking for program /opt/cray/alps/default/bin/ar...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/ar...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ar...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/ar...not found Checking for program /global/common/cori/software/altd/2.0/bin/ar...not found Checking for program /usr/common/software/bin/ar...not found Checking for program /usr/common/mss/bin/ar...not found Checking for program /usr/common/nsg/bin/ar...not found Checking for program /opt/ovis/bin/ar...not found Checking for program /opt/ovis/sbin/ar...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/ranlib...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/ranlib...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/ranlib...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/ranlib...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/ranlib...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/ranlib...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/ranlib...not found Checking for program /opt/cray/alps/default/bin/ranlib...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/ranlib...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/ranlib...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/ranlib...not found Checking for program /global/common/cori/software/altd/2.0/bin/ranlib...not found Checking for program /usr/common/software/bin/ranlib...not found Checking for program /usr/common/mss/bin/ranlib...not found Checking for program /usr/common/nsg/bin/ranlib...not found Checking for program /opt/ovis/bin/ranlib...not found Checking for program /opt/ovis/sbin/ranlib...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-31tiaa71/config.setCompilers/libconf1.a /tmp/petsc-31tiaa71/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib /tmp/petsc-31tiaa71/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -L/tmp/petsc-31tiaa71/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1394) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1394) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking shared linker cc using flags ['-shared'] Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/cc...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/cc...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/cc...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cc...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/cc...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/cc...not found Checking for program /opt/cray/alps/default/bin/cc...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/cc...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/cc...found Defined make macro "LD_SHARED" to "cc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -shared /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.setCompilers/conftest.o: relocation R_X86_64_PC32 against symbol `__intel_new_feature_proc_init' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: nonrepresentable section on output Rejecting linker flag -shared due to nonzero status from link Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/libconftest.so /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crt1.o: in function `_start': /home/abuild/rpmbuild/BUILD/glibc-2.26/csu/../sysdeps/x86_64/start.S:110: undefined reference to `main' Rejected C compiler flag because it was not compatible with shared linker cc using flags ['-shared'] Running Executable WITHOUT threads to time it out Executing: cc --help | head -n 20 stdout: Usage: cc [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) --[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary Trying C compiler flag -PIC Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -PIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: icc: command line warning #10006: ignoring unknown option '-PIC' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -PIC due to icc: command line warning #10006: ignoring unknown option '-PIC' Rejected C compiler flag -PIC because it was not compatible with shared linker cc using flags ['-shared'] Trying C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -shared -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -L/tmp/petsc-31tiaa71/config.setCompilers -lconftest Using shared linker cc with flags ['-shared'] and library extension so Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1128) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1128) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata.str1.4' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: nonrepresentable section on output Rejected Cxx compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: CC --help | head -n 20 stdout: Usage: CC [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) --[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary Trying Cxx compiler flag -PIC for PIC code Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -PIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: icpc: command line warning #10006: ignoring unknown option '-PIC' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -PIC due to icpc: command line warning #10006: ignoring unknown option '-PIC' Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Trying FC for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.setCompilers/conftest.o: relocation R_X86_64_32 against symbol `xx_' can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: final link failed: nonrepresentable section on output Rejected FC compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: ftn --help | head -n 20 stdout: Usage: ftn [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) --[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary Trying FC compiler flag -PIC for PIC code Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -PIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-PIC' Source: program main end Rejecting compiler flag -PIC due to ifort: command line warning #10006: ignoring unknown option '-PIC' Rejected FC compiler flag -PIC because shared linker cannot handle it Trying FC compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC for PIC code ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1506) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1506) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: cc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -Wl,-rpath,/global/u2/m/madams/petsc_install/petsc -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/global/u2/m/madams/petsc_install/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: cc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -Wl,-rpath,/global/u2/m/madams/petsc_install/petsc /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/global/u2/m/madams/petsc_install/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: cc -V Trying FC linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -Wl,-rpath,/global/u2/m/madams/petsc_install/petsc -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/global/u2/m/madams/petsc_install/petsc ================================================================================ TEST checkLibC from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1541) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1541) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1587) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1587) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-31tiaa71/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /tmp/petsc-31tiaa71/config.libraries Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.libraries -fPIC /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC /tmp/petsc-31tiaa71/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking dynamic linker cc using flags ['-shared'] Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/cc...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/cc...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/cc...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cc...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/cc...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/cc...not found Checking for program /opt/cray/alps/default/bin/cc...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/cc...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/cc...found Defined make macro "DYNAMICLINKER" to "cc" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -shared -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-31tiaa71/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -ldl Using dynamic linker cc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/setCompilers.py:1636) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1636) Output module data as defines and substitutions Substituting "CC" with "cc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "cc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "CC" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "CC -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "ftn" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 378.547896 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/sharedLibraries.py:52) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:52) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Running Executable WITHOUT threads to time it out Executing: cc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/sharedLibraries.py:97) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:97) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/sharedLibraries.py:103) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:103) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 5.842978 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined "USE_64BIT_INDICES" to "1" Checking for functions [__floatdidf] in library ['-lgcc_s.1'] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.libraries -fPIC /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char __floatdidf(); static void _check___floatdidf() { __floatdidf(); } int main() { _check___floatdidf();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC /tmp/petsc-31tiaa71/config.libraries/conftest.o -lgcc_s.1 -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lgcc_s.1 Defined make macro "PETSC_INDEX_SIZE" to "64" child PETSc.options.indexTypes 9.354952 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "C_VERSION" to "icc (ICC) 19.0.3.199 20190206" Defined make macro "MPICC_SHOW" to "Unavailable" Trying C compiler flag -g -O2 Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.libraries -fPIC -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g -O2 Defined make macro "Cxx_VERSION" to "icpc (ICC) 19.0.3.199 20190206" Defined make macro "MPICXX_SHOW" to "Unavailable" Trying Cxx compiler flag -g -O2 Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g -O2 Defined make macro "FC_VERSION" to "ifort (IFORT) 19.0.3.199 20190206" Defined make macro "MPIFC_SHOW" to "Unavailable" Trying FC compiler flag -g -O2 Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -g -O2 child config.compilerFlags 24.544357 Running Executable WITHOUT threads to time it out Executing: cc --help | head -n 20 stdout: Usage: cc [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) --[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary ================================================================================ TEST checkRestrict from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: cc -V All intermediate test results are stored in /tmp/petsc-31tiaa71/config.compilers Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:405) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:405) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:120) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:120) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:416) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:416) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.compilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:214) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:214) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o /tmp/petsc-31tiaa71/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.compilers/conftest -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o /tmp/petsc-31tiaa71/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:1363) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1363) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 -MMD -MP /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -g -O2 -fPIC -MMD -MP /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ================================================================================ TEST checkC99Flag from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:1408) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1408) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: Defined "HAVE_C99" to "1" Running Executable WITHOUT threads to time it out Executing: CC --help | head -n 20 stdout: Usage: CC [options] file... Options: -[no-]add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]add-rpath-shared Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in specific versions of libraries at runtime for generated shared libraries. (Off by default.) --[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary ================================================================================ TEST checkRestrict from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: cc -V Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:435) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:435) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:135) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:135) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:547) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:547) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.compilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o /tmp/petsc-31tiaa71/config.compilers/confc.o -ldl C++ libraries are not needed when using C linker Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o /tmp/petsc-31tiaa71/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/confc.o: in function `asub()': /tmp/petsc-31tiaa71/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/conftest.cc:7: undefined reference to `std::cout' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/confc.o: in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/include/c++/7/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/confc.o: in function `asub()': /tmp/petsc-31tiaa71/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/confc.o: in function `__sti__$E': /usr/include/c++/7/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: /usr/include/c++/7/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/confc.o: in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/include/c++/7/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/bin/ld: /usr/include/c++/7/ext/new_allocator.h:125: undefined reference to `operator delete(void*)' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/confc.o:(.gnu.linkonce.d.DW.ref.__gxx_personality_v0+0x0): undefined reference to `__gxx_personality_v0' Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o /tmp/petsc-31tiaa71/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with FC compiler ================================================================================ TEST checkCxxDialect from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:463) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:463) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -V ================================================================================ TEST checkFortranNameMangling from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:854) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:854) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o /tmp/petsc-31tiaa71/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Running Executable WITHOUT threads to time it out Executing: ftn --version stdout: ifort (IFORT) 19.0.3.199 20190206 Copyright (C) 1985-2019 Intel Corporation. All rights reserved. Defined "FORTRAN_CHARLEN_T" to "int" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:892) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:892) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o /tmp/petsc-31tiaa71/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/conftest.o: in function `MAIN__': /tmp/petsc-31tiaa71/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' ================================================================================ TEST checkFortranLibraries from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:902) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:902) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.compilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o /tmp/petsc-31tiaa71/config.compilers/confc.o -lstdc++ -ldl Fortran libraries are not needed when using C linker Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.compilers/conftest -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o /tmp/petsc-31tiaa71/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.compilers/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.compilers/conftest.cc:6: undefined reference to `asub_()' Fortran code cannot directly be linked with C++ linker, therefore will determine needed Fortran libraries Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilers/conftest -v -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: __INTEL_PRE_FFLAGS options: -Qlocation,ld,/global/common/cori/software/altd/2.0/bin ifort version 19.0.3.199 /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/fortcom -mGLOB_em64t=TRUE -mP1OPT_version=19.0-intel64 -mGLOB_diag_file=/tmp/petsc-31tiaa71/config.compilers/conftest.diag -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=750 "-mGLOB_options_string=-I/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/include -I/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include -I/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include -I/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include -I/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include -I/opt/cray/pe/pmi/5.0.14/include -I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include -I/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include -I/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include -I/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include -I/opt/cray-hss-devel/9.0.0/include -Qlocation,ld,/global/common/cori/software/altd/2.0/bin -xCORE-AVX2 -D__CRAYXC -D__CRAY_HASWELL -D__CRAYXT_COMPUTE_LINUX_TARGET -o /tmp/petsc-31tiaa71/config.compilers/conftest -v -fPIC -g -O2 -lstdc++ -ldl -Wl,-rpath=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -L/opt/cray/pe/atp/2.1.3/libApp -Wl,-Ttext-segment=0x20000000 -Wl,-zmax-page-size=0x20000000 -Wl,--whole-archive,-lhugetlbfs,--no-whole-archive -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData -Wl,--undefined=_ATP_Data_Globals -Wl,--undefined=__atpHandlerInstall -lrca -Wl,--as-needed,-lmpich_intel,--no-as-needed -Wl,--as-needed,-lmpichf90_intel,--no-as-needed -Wl,--as-needed,-lsci_intel_mpi,--no-as-needed -Wl,--as-needed,-lsci_intel,--no-as-needed -Wl,--as-needed,-limf,--no-as-needed -Wl,--as-needed,-lm,--no-as-needed -Wl,--as-needed,-lpthread,--no-as-needed" -mGLOB_position_independent_code -mGLOB_preemption_model=3 -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64 -mP3OPT_emit_line_numbers -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mDEBUG_info_level=2 -mDEBUG_use_indirect_strings=TRUE -mIPOPT_ninl_debug_info=TRUE -mDEBUG_emit_dwarf_inline_info=TRUE -mDEBUG_debug_ranges=TRUE -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF40 -mGLOB_as_output_backup_file_name=/tmp/ifortef8zJoas_.s -mGLOB_dashboard_use_source_name -mGLOB_dashboard_per_object_dir=/tmp/petsc-31tiaa71/config.compilers -mIPOPT_activate -mGLOB_product_id_code=0x22006d91 -mGLOB_extended_instructions=0x4000 -mGLOB_advanced_optim=TRUE -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mP2OPT_disam_type_based_disam=2 -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name -mGLOB_opt_report_per_object_dir=/tmp/petsc-31tiaa71/config.compilers -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort1918469610EgY3xS -mGLOB_opt_level=2 -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/libiml_attr.so -mP2OPT_hlo_embed_loopinfo -mPGOPTI_gen_threadsafe_level=0 -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=/tmp/ifortslis0UivEz -mIPOPT_mo_global_data -mIPOPT_link_script_file=/tmp/ifortscript9Ir2bu "-mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crt1.o" "/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o" "/usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o" "--eh-frame-hdr" "--build-id" "-dynamic-linker" "/lib64/ld-linux-x86-64.so.2" "-m" "elf_x86_64" "-L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib" "-L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64" "-L/opt/cray/pe/atp/2.1.3/libApp" "-o" "/tmp/petsc-31tiaa71/config.compilers/conftest" "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin/for_main.o" "-L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin" "-L/usr/lib64/gcc/x86_64-suse-linux/7/" "-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64" "-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/" "-L/lib/../lib64" "-L/lib/../lib64/" "-L/usr/lib/../lib64" "-L/usr/lib/../lib64/" "-L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64/" "-L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/" "-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/lib/" "-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../" "-L/lib64" "-L/lib/" "-L/usr/lib64" "-L/usr/lib" "/tmp/petsc-31tiaa71/config.compilers/conftest.o" "-lstdc++" "-ldl" "-rpath=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64" "-Ttext-segment=0x20000000" "-zmax-page-size=0x20000000" "--whole-archive" "-lhugetlbfs" "--no-whole-archive" "--no-as-needed" "-lAtpSigHandler" "-lAtpSigHCommData" "--undefined=_ATP_Data_Globals" "--undefined=__atpHandlerInstall" "-lrca" "--as-needed" "-lmpich_intel" "--no-as-needed" "--as-needed" "-lmpichf90_intel" "--no-as-needed" "--as-needed" "-lsci_intel_mpi" "--no-as-needed" "--as-needed" "-lsci_intel" "--no-as-needed" "--as-needed" "-limf" "--no-as-needed" "--as-needed" "-lm" "--no-as-needed" "--as-needed" "-lpthread" "--no-as-needed" "-Bdynamic" "-Bstatic" "-lifport" "-lifcoremt_pic" "-limf" "-lsvml" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-lirc" "-Bdynamic" "-lpthread" "-Bstatic" "-lsvml" "-Bdynamic" "-lc" "-lgcc" "-lgcc_s" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/usr/lib64/gcc/x86_64-suse-linux/7/crtend.o" "/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crtn.o"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/tmp/ipo_ifortS4Mqp6.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchqPTOse -mGLOB_linker_version=2.32.0.20190909 -mGLOB_linker=/global/common/cori/software/altd/2.0/bin/ld -mGLOB_driver_tempfile_name=/tmp/iforttempfileTjQwE9 -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ipo_ifortS4Mqp6.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.f -mP2OPT_symtab_type_copy=true /tmp/petsc-31tiaa71/config.compilers/conftest.o -mIPOPT_object_files=T -mIPOPT_assembly_files=/tmp/ifortalisIIHquV -mIPOPT_generated_tempfiles=/tmp/ifortelisdGYV1P -mIPOPT_embedded_object_base_name=/tmp/iforteobjiK4rzK -mIPOPT_cmdline_link_new_name=/tmp/ifortllisBTEY6E /global/common/cori/software/altd/2.0/bin/ld /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crt1.o /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -m elf_x86_64 -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -L/opt/cray/pe/atp/2.1.3/libApp -o /tmp/petsc-31tiaa71/config.compilers/conftest /opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin/for_main.o -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/7/ -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/ -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/lib/ -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/petsc-31tiaa71/config.compilers/conftest.o -lstdc++ -ldl -rpath=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -Ttext-segment=0x20000000 -zmax-page-size=0x20000000 --whole-archive -lhugetlbfs --no-whole-archive --no-as-needed -lAtpSigHandler -lAtpSigHCommData --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lrca --as-needed -lmpich_intel --no-as-needed --as-needed -lmpichf90_intel --no-as-needed --as-needed -lsci_intel_mpi --no-as-needed --as-needed -lsci_intel --no-as-needed --as-needed -limf --no-as-needed --as-needed -lm --no-as-needed --as-needed -lpthread --no-as-needed -Bdynamic -Bstatic -lifport -lifcoremt_pic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crtn.o compilers: Checking arg __INTEL_PRE_FFLAGS compilers: Unknown arg __INTEL_PRE_FFLAGS compilers: Checking arg options: compilers: Unknown arg options: compilers: Checking arg -Qlocation,ld,/global/common/cori/software/altd/2.0/bin compilers: Unknown arg -Qlocation,ld,/global/common/cori/software/altd/2.0/bin compilers: Checking arg ifort compilers: Unknown arg ifort compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 19.0.3.199 compilers: Unknown arg 19.0.3.199 compilers: Checking arg /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/fortcom compilers: Unknown arg /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/fortcom compilers: Checking arg -mGLOB_em64t=TRUE compilers: Unknown arg -mGLOB_em64t=TRUE compilers: Checking arg -mP1OPT_version=19.0-intel64 compilers: Unknown arg -mP1OPT_version=19.0-intel64 compilers: Checking arg -mGLOB_diag_file=/tmp/petsc-31tiaa71/config.compilers/conftest.diag compilers: Unknown arg -mGLOB_diag_file=/tmp/petsc-31tiaa71/config.compilers/conftest.diag compilers: Checking arg -mGLOB_long_size_64 compilers: Unknown arg -mGLOB_long_size_64 compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg -mGLOB_gcc_version=750 compilers: Unknown arg -mGLOB_gcc_version=750 compilers: Checking arg "-mGLOB_options_string=-I/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/include compilers: Unknown arg "-mGLOB_options_string=-I/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/include compilers: Checking arg -I/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include compilers: Found include directory: /opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include compilers: Checking arg -I/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include compilers: Found include directory: /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include compilers: Checking arg -I/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include compilers: Found include directory: /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include compilers: Checking arg -I/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include compilers: Found include directory: /opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include compilers: Checking arg -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include compilers: Found include directory: /opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include compilers: Checking arg -I/opt/cray/pe/pmi/5.0.14/include compilers: Found include directory: /opt/cray/pe/pmi/5.0.14/include compilers: Checking arg -I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include compilers: Found include directory: /opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include compilers: Checking arg -I/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include compilers: Found include directory: /opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include compilers: Checking arg -I/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include compilers: Found include directory: /opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include compilers: Checking arg -I/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include compilers: Found include directory: /opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include compilers: Checking arg -I/opt/cray-hss-devel/9.0.0/include compilers: Found include directory: /opt/cray-hss-devel/9.0.0/include compilers: Checking arg -Qlocation,ld,/global/common/cori/software/altd/2.0/bin compilers: Unknown arg -Qlocation,ld,/global/common/cori/software/altd/2.0/bin compilers: Checking arg -xCORE-AVX2 compilers: Unknown arg -xCORE-AVX2 compilers: Checking arg -D__CRAYXC compilers: Unknown arg -D__CRAYXC compilers: Checking arg -D__CRAY_HASWELL compilers: Unknown arg -D__CRAY_HASWELL compilers: Checking arg -D__CRAYXT_COMPUTE_LINUX_TARGET compilers: Unknown arg -D__CRAYXT_COMPUTE_LINUX_TARGET compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-31tiaa71/config.compilers/conftest compilers: Unknown arg /tmp/petsc-31tiaa71/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -O2 compilers: Unknown arg -O2 compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -Wl,-rpath=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib compilers: Found library directory: -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Found library directory: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib compilers: Found library directory: -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib compilers: Checking arg -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 compilers: Found library directory: -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.1.3/libApp compilers: Found library directory: -L/opt/cray/pe/atp/2.1.3/libApp compilers: Checking arg -Wl,-Ttext-segment=0x20000000 compilers: Unknown arg -Wl,-Ttext-segment=0x20000000 compilers: Checking arg -Wl,-zmax-page-size=0x20000000 compilers: Unknown arg -Wl,-zmax-page-size=0x20000000 compilers: Checking arg -Wl,--whole-archive,-lhugetlbfs,--no-whole-archive compilers: Unknown arg -Wl,--whole-archive,-lhugetlbfs,--no-whole-archive compilers: Checking arg -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData compilers: Unknown arg -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData compilers: Checking arg -Wl,--undefined=_ATP_Data_Globals compilers: Unknown arg -Wl,--undefined=_ATP_Data_Globals compilers: Checking arg -Wl,--undefined=__atpHandlerInstall compilers: Unknown arg -Wl,--undefined=__atpHandlerInstall compilers: Checking arg -lrca compilers: Found library: -lrca compilers: Checking arg -Wl,--as-needed,-lmpich_intel,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lmpich_intel,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lmpichf90_intel,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lmpichf90_intel,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lsci_intel_mpi,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lsci_intel_mpi,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lsci_intel,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lsci_intel,--no-as-needed compilers: Checking arg -Wl,--as-needed,-limf,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-limf,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lm,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lm,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lpthread,--no-as-needed" compilers: Unknown arg -Wl,--as-needed,-lpthread,--no-as-needed compilers: Checking arg -mGLOB_position_independent_code compilers: Unknown arg -mGLOB_position_independent_code compilers: Checking arg -mGLOB_preemption_model=3 compilers: Unknown arg -mGLOB_preemption_model=3 compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64 compilers: Unknown arg -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64 compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Unknown arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Checking arg -mDEBUG_info_level=2 compilers: Unknown arg -mDEBUG_info_level=2 compilers: Checking arg -mDEBUG_use_indirect_strings=TRUE compilers: Unknown arg -mDEBUG_use_indirect_strings=TRUE compilers: Checking arg -mIPOPT_ninl_debug_info=TRUE compilers: Unknown arg -mIPOPT_ninl_debug_info=TRUE compilers: Checking arg -mDEBUG_emit_dwarf_inline_info=TRUE compilers: Unknown arg -mDEBUG_emit_dwarf_inline_info=TRUE compilers: Checking arg -mDEBUG_debug_ranges=TRUE compilers: Unknown arg -mDEBUG_debug_ranges=TRUE compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF40 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF40 compilers: Checking arg -mGLOB_as_output_backup_file_name=/tmp/ifortef8zJoas_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/tmp/ifortef8zJoas_.s compilers: Checking arg -mGLOB_dashboard_use_source_name compilers: Unknown arg -mGLOB_dashboard_use_source_name compilers: Checking arg -mGLOB_dashboard_per_object_dir=/tmp/petsc-31tiaa71/config.compilers compilers: Unknown arg -mGLOB_dashboard_per_object_dir=/tmp/petsc-31tiaa71/config.compilers compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_product_id_code=0x22006d91 compilers: Unknown arg -mGLOB_product_id_code=0x22006d91 compilers: Checking arg -mGLOB_extended_instructions=0x4000 compilers: Unknown arg -mGLOB_extended_instructions=0x4000 compilers: Checking arg -mGLOB_advanced_optim=TRUE compilers: Unknown arg -mGLOB_advanced_optim=TRUE compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mP2OPT_disam_type_based_disam=2 compilers: Unknown arg -mP2OPT_disam_type_based_disam=2 compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mGLOB_opt_report_use_source_name compilers: Unknown arg -mGLOB_opt_report_use_source_name compilers: Checking arg -mGLOB_opt_report_per_object_dir=/tmp/petsc-31tiaa71/config.compilers compilers: Unknown arg -mGLOB_opt_report_per_object_dir=/tmp/petsc-31tiaa71/config.compilers compilers: Checking arg -mGLOB_offload_mode=1 compilers: Unknown arg -mGLOB_offload_mode=1 compilers: Checking arg -mP2OPT_offload_unique_var_string=ifort1918469610EgY3xS compilers: Unknown arg -mP2OPT_offload_unique_var_string=ifort1918469610EgY3xS compilers: Checking arg -mGLOB_opt_level=2 compilers: Unknown arg -mGLOB_opt_level=2 compilers: Checking arg -mP2OPT_hlo_level=2 compilers: Unknown arg -mP2OPT_hlo_level=2 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/libiml_attr.so compilers: Unknown arg -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/libiml_attr.so compilers: Checking arg -mP2OPT_hlo_embed_loopinfo compilers: Unknown arg -mP2OPT_hlo_embed_loopinfo compilers: Checking arg -mPGOPTI_gen_threadsafe_level=0 compilers: Unknown arg -mPGOPTI_gen_threadsafe_level=0 compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=/tmp/ifortslis0UivEz compilers: Unknown arg -mIPOPT_source_files_list=/tmp/ifortslis0UivEz compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg -mIPOPT_link_script_file=/tmp/ifortscript9Ir2bu compilers: Unknown arg -mIPOPT_link_script_file=/tmp/ifortscript9Ir2bu compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crt1.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o compilers: Checking arg "--eh-frame-hdr" compilers: Unknown arg --eh-frame-hdr compilers: Checking arg "--build-id" compilers: Unknown arg --build-id compilers: Checking arg "-dynamic-linker" compilers: Unknown arg -dynamic-linker compilers: Checking arg "/lib64/ld-linux-x86-64.so.2" compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg "-m" compilers: Unknown arg -m compilers: Checking arg "elf_x86_64" compilers: Unknown arg elf_x86_64 compilers: Checking arg "-L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib compilers: Checking arg "-L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64" compilers: Already in lflags so skipping: -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 compilers: Checking arg "-L/opt/cray/pe/atp/2.1.3/libApp" compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.1.3/libApp compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "/tmp/petsc-31tiaa71/config.compilers/conftest" compilers: Unknown arg /tmp/petsc-31tiaa71/config.compilers/conftest compilers: Checking arg "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin/for_main.o" compilers: Unknown arg /opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin/for_main.o compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/7/" compilers: Found library directory: -L/usr/lib64/gcc/x86_64-suse-linux/7 compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64" compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/" compilers: Checking arg "-L/lib/../lib64" compilers: Checking arg "-L/lib/../lib64/" compilers: Checking arg "-L/usr/lib/../lib64" compilers: Checking arg "-L/usr/lib/../lib64/" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64/" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/lib/" compilers: Found library directory: -L/usr/x86_64-suse-linux/lib compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/7/../../../" compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/lib/" compilers: Checking arg "-L/usr/lib64" compilers: Checking arg "-L/usr/lib" compilers: Checking arg "/tmp/petsc-31tiaa71/config.compilers/conftest.o" compilers: Unknown arg /tmp/petsc-31tiaa71/config.compilers/conftest.o compilers: Checking arg "-lstdc++" compilers: Already in lflags: -lstdc++ compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-rpath=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64" compilers: Unknown arg -rpath=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 compilers: Checking arg "-Ttext-segment=0x20000000" compilers: Unknown arg -Ttext-segment=0x20000000 compilers: Checking arg "-zmax-page-size=0x20000000" compilers: Unknown arg -zmax-page-size=0x20000000 compilers: Checking arg "--whole-archive" compilers: Unknown arg --whole-archive compilers: Checking arg "-lhugetlbfs" compilers: Found library: -lhugetlbfs compilers: Checking arg "--no-whole-archive" compilers: Unknown arg --no-whole-archive compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "-lAtpSigHandler" compilers: Found library: -lAtpSigHandler compilers: Checking arg "-lAtpSigHCommData" compilers: Found library: -lAtpSigHCommData compilers: Checking arg "--undefined=_ATP_Data_Globals" compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg "--undefined=__atpHandlerInstall" compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg "-lrca" compilers: Already in lflags: -lrca compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lmpich_intel" compilers: Found library: -lmpich_intel compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lmpichf90_intel" compilers: Found library: -lmpichf90_intel compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lsci_intel_mpi" compilers: Found library: -lsci_intel_mpi compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lsci_intel" compilers: Found library: -lsci_intel compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-limf" compilers: Found library: -limf compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lm" compilers: Found library: -lm compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lpthread" compilers: Found library: -lpthread compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lifport" compilers: Found library: -lifport compilers: Checking arg "-lifcoremt_pic" compilers: Found library: -lifcoremt_pic compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "-lsvml" compilers: Found library: -lsvml compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lm" compilers: Already in lflags: -lm compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lipgo" compilers: Found library: -lipgo compilers: Checking arg "-lirc" compilers: Found library: -lirc compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lsvml" compilers: Already in lflags: -lsvml compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lc" compilers: Found system library therefore skipping: -lc compilers: Checking arg "-lgcc" compilers: Found system library therefore skipping: -lgcc compilers: Checking arg "-lgcc_s" compilers: Found library: -lgcc_s compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc_s" compilers: Found library: -lirc_s compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lc" compilers: Found system library therefore skipping: -lc compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/7/crtend.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crtn.o"" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crtn.o compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/tmp/ipo_ifortS4Mqp6.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/tmp/ipo_ifortS4Mqp6.o compilers: Checking arg -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchqPTOse compilers: Unknown arg -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchqPTOse compilers: Checking arg -mGLOB_linker_version=2.32.0.20190909 compilers: Unknown arg -mGLOB_linker_version=2.32.0.20190909 compilers: Checking arg -mGLOB_linker=/global/common/cori/software/altd/2.0/bin/ld compilers: Unknown arg -mGLOB_linker=/global/common/cori/software/altd/2.0/bin/ld compilers: Checking arg -mGLOB_driver_tempfile_name=/tmp/iforttempfileTjQwE9 compilers: Unknown arg -mGLOB_driver_tempfile_name=/tmp/iforttempfileTjQwE9 compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_async_unwind_tables=TRUE compilers: Unknown arg -mGLOB_async_unwind_tables=TRUE compilers: Checking arg -mGLOB_obj_output_file=/tmp/ipo_ifortS4Mqp6.o compilers: Unknown arg -mGLOB_obj_output_file=/tmp/ipo_ifortS4Mqp6.o compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.f compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.f compilers: Checking arg -mP2OPT_symtab_type_copy=true compilers: Unknown arg -mP2OPT_symtab_type_copy=true compilers: Checking arg /tmp/petsc-31tiaa71/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-31tiaa71/config.compilers/conftest.o compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=/tmp/ifortalisIIHquV compilers: Unknown arg -mIPOPT_assembly_files=/tmp/ifortalisIIHquV compilers: Checking arg -mIPOPT_generated_tempfiles=/tmp/ifortelisdGYV1P compilers: Unknown arg -mIPOPT_generated_tempfiles=/tmp/ifortelisdGYV1P compilers: Checking arg -mIPOPT_embedded_object_base_name=/tmp/iforteobjiK4rzK compilers: Unknown arg -mIPOPT_embedded_object_base_name=/tmp/iforteobjiK4rzK compilers: Checking arg -mIPOPT_cmdline_link_new_name=/tmp/ifortllisBTEY6E compilers: Unknown arg -mIPOPT_cmdline_link_new_name=/tmp/ifortllisBTEY6E compilers: Checking arg /global/common/cori/software/altd/2.0/bin/ld compilers: Unknown arg /global/common/cori/software/altd/2.0/bin/ld compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crt1.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crti.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/crtbegin.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib compilers: Checking arg -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 compilers: Already in lflags so skipping: -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.1.3/libApp compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.1.3/libApp compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-31tiaa71/config.compilers/conftest compilers: Unknown arg /tmp/petsc-31tiaa71/config.compilers/conftest compilers: Checking arg /opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin/for_main.o compilers: Unknown arg /opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin/for_main.o compilers: Checking arg -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7/ compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/7 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/ compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/lib/../lib64/ compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64/ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64/ compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/ compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/lib/ compilers: Already in lflags so skipping: -L/usr/x86_64-suse-linux/lib compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/7/../../../ compilers: Checking arg -L/lib64 compilers: Checking arg -L/lib/ compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib compilers: Checking arg /tmp/petsc-31tiaa71/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-31tiaa71/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 compilers: Unknown arg -rpath=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 compilers: Checking arg -Ttext-segment=0x20000000 compilers: Unknown arg -Ttext-segment=0x20000000 compilers: Checking arg -zmax-page-size=0x20000000 compilers: Unknown arg -zmax-page-size=0x20000000 compilers: Checking arg --whole-archive compilers: Unknown arg --whole-archive compilers: Checking arg -lhugetlbfs compilers: Already in lflags: -lhugetlbfs compilers: Checking arg --no-whole-archive compilers: Unknown arg --no-whole-archive compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lAtpSigHandler compilers: Already in lflags: -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Already in lflags: -lAtpSigHCommData compilers: Checking arg --undefined=_ATP_Data_Globals compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg --undefined=__atpHandlerInstall compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg -lrca compilers: Already in lflags: -lrca compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpich_intel compilers: Already in lflags: -lmpich_intel compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lmpichf90_intel compilers: Already in lflags: -lmpichf90_intel compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_intel_mpi compilers: Already in lflags: -lsci_intel_mpi compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lsci_intel compilers: Already in lflags: -lsci_intel compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lifport compilers: Already in lflags: -lifport compilers: Checking arg -lifcoremt_pic compilers: Already in lflags: -lifcoremt_pic compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lipgo compilers: Already in lflags: -lipgo compilers: Checking arg -lirc compilers: Already in lflags: -lirc compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc_s compilers: Already in lflags: -lirc_s compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/crtend.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/7/../../../../lib64/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-lstdc++', '-ldl', '-Wl,-rpath,/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib', '-L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib', '-Wl,-rpath,/opt/cray/dmapp/default/lib64', '-L/opt/cray/dmapp/default/lib64', '-Wl,-rpath,/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib', '-L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib', '-Wl,-rpath,/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64', '-L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64', '-Wl,-rpath,/opt/cray/pe/atp/2.1.3/libApp', '-L/opt/cray/pe/atp/2.1.3/libApp', '-lrca', '-Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64', '-L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64', '-Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64', '-L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64', '-Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7', '-L/usr/lib64/gcc/x86_64-suse-linux/7', '-Wl,-rpath,/usr/x86_64-suse-linux/lib', '-L/usr/x86_64-suse-linux/lib', '-lhugetlbfs', '-lAtpSigHandler', '-lAtpSigHCommData', '-lmpich_intel', '-lmpichf90_intel', '-lsci_intel_mpi', '-lsci_intel', '-limf', '-lm', '-lpthread', '-lifport', '-lifcoremt_pic', '-lsvml', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib -Wl,-rpath,/opt/cray/dmapp/default/lib64 -L/opt/cray/dmapp/default/lib64 -Wl,-rpath,/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -Wl,-rpath,/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -Wl,-rpath,/opt/cray/pe/atp/2.1.3/libApp -L/opt/cray/pe/atp/2.1.3/libApp -lrca -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -Wl,-rpath,/usr/x86_64-suse-linux/lib -L/usr/x86_64-suse-linux/lib -lhugetlbfs -lAtpSigHandler -lAtpSigHCommData -lmpich_intel -lmpichf90_intel -lsci_intel_mpi -lsci_intel -limf -lm -lpthread -lifport -lifcoremt_pic -lsvml -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib -Wl,-rpath,/opt/cray/dmapp/default/lib64 -L/opt/cray/dmapp/default/lib64 -Wl,-rpath,/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -Wl,-rpath,/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -Wl,-rpath,/opt/cray/pe/atp/2.1.3/libApp -L/opt/cray/pe/atp/2.1.3/libApp -lrca -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -Wl,-rpath,/usr/x86_64-suse-linux/lib -L/usr/x86_64-suse-linux/lib -lhugetlbfs -lAtpSigHandler -lAtpSigHCommData -lmpich_intel -lmpichf90_intel -lsci_intel_mpi -lsci_intel -limf -lm -lpthread -lifport -lifcoremt_pic -lsvml -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib -Wl,-rpath,/opt/cray/dmapp/default/lib64 -L/opt/cray/dmapp/default/lib64 -Wl,-rpath,/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -Wl,-rpath,/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -Wl,-rpath,/opt/cray/pe/atp/2.1.3/libApp -L/opt/cray/pe/atp/2.1.3/libApp -lrca -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -Wl,-rpath,/usr/x86_64-suse-linux/lib -L/usr/x86_64-suse-linux/lib -lhugetlbfs -lAtpSigHandler -lAtpSigHCommData -lmpich_intel -lmpichf90_intel -lsci_intel_mpi -lsci_intel -limf -lm -lpthread -lifport -lifcoremt_pic -lsvml -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.setCompilers/conftest -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib -L/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib -Wl,-rpath,/opt/cray/dmapp/default/lib64 -L/opt/cray/dmapp/default/lib64 -Wl,-rpath,/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -L/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/lib -Wl,-rpath,/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -L/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/lib64 -Wl,-rpath,/opt/cray/pe/atp/2.1.3/libApp -L/opt/cray/pe/atp/2.1.3/libApp -lrca -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib64/gcc/x86_64-suse-linux/7 -L/usr/lib64/gcc/x86_64-suse-linux/7 -Wl,-rpath,/usr/x86_64-suse-linux/lib -L/usr/x86_64-suse-linux/lib -lhugetlbfs -lAtpSigHandler -lAtpSigHCommData -lmpich_intel -lmpichf90_intel -lsci_intel_mpi -lsci_intel -limf -lm -lpthread -lifport -lifcoremt_pic -lsvml -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:1328) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1328) Check that Fortran can link C++ libraries Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -g -O2 -fPIC /tmp/petsc-31tiaa71/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilers/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilers/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilers/conftest.o /tmp/petsc-31tiaa71/config.compilers/cxxobj.o /tmp/petsc-31tiaa71/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ================================================================================ TEST setupFrameworkCompilers from config.compilers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilers.py:1473) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1473) child config.compilers 288.211272 ================================================================================ TEST configureClosure from config.utilities.closure(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /tmp/petsc-31tiaa71/config.utilities.closure Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.closure/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-31tiaa71/config.utilities.closure/conftest.c(6): error: expected an identifier int (^closure)(int);; ^ compilation aborted for /tmp/petsc-31tiaa71/config.utilities.closure/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 3.524438 ================================================================================ TEST checkFortranTypeSizes from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:56) TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support All intermediate test results are stored in /tmp/petsc-31tiaa71/config.compilersFortran Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.F90 Successful compile: Source: program main real*8 variable end ================================================================================ TEST checkFortranPreprocessor from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:73) TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.compilersFortran -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end compilers: Fortran uses preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:96) TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.compilersFortran -I/tmp/petsc-31tiaa71/config.setCompilers -fPIC -g -O2 -DTesting /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortran90 from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:146) TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.F90 Successful compile: Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -lstdc++ -ldl Fortran compiler supports F90 ================================================================================ TEST checkFortran90FreeForm from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:162) TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ================================================================================ TEST checkFortran2003 from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:176) TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.F90 Successful compile: Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ================================================================================ TEST checkFortran90Array from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:211) TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Running Executable WITHOUT threads to time it out Executing: ftn -V compilers: Using --with-batch, so guess that F90 uses a single argument for array pointers ================================================================================ TEST checkFortran90AssumedType from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:298) TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Running Executable WITHOUT threads to time it out Executing: ftn -qversion ================================================================================ TEST checkFortranModuleInclude from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:303) TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -I/tmp/petsc-31tiaa71/config.compilersFortran/confdir -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest -I/tmp/petsc-31tiaa71/config.compilersFortran/confdir -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o /tmp/petsc-31tiaa71/config.compilersFortran/configtest.o -lstdc++ -ldl compilers: Fortran module include flag -I found ================================================================================ TEST checkFortranModuleOutput from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:369) TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -module /tmp/petsc-31tiaa71/config.compilersFortran/confdir -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module found ================================================================================ TEST checkFortranTypeStar from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:135) TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ================================================================================ TEST checkFortranTypeInitialize from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:125) TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ================================================================================ TEST configureFortranFlush from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:116) TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.compilersFortran/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ================================================================================ TEST checkDependencyGenerationFlag from config.compilersFortran(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/compilersFortran.py:414) TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Rejected FC compiler flag -MMD because no dependency file (/tmp/petsc-31tiaa71/config.setCompilers/conftest.d) was generated Trying FC compiler flag -xMMD Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Rejected FC compiler flag -MD because no dependency file (/tmp/petsc-31tiaa71/config.setCompilers/conftest.d) was generated Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 -MMD -MP /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-MP' Source: program main end Rejecting compiler flag -MMD -MP due to ifort: command line warning #10006: ignoring unknown option '-MP' Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 -MMD /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 -xMMD /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: ifort: command line error: Unrecognized keyword 'MMD' for option '-x' Source: program main end Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to ifort: command line error: Unrecognized keyword 'MMD' for option '-x' PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 -qmakedep=gcc /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-qmakedep=gcc' Source: program main end Rejecting compiler flag -qmakedep=gcc due to ifort: command line warning #10006: ignoring unknown option '-qmakedep=gcc' Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.setCompilers/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -fPIC -g -O2 -MD /tmp/petsc-31tiaa71/config.setCompilers/conftest.F90 Successful compile: Source: program main end child config.compilersFortran 94.157603 ================================================================================ TEST checkStdC from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.headers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c ================================================================================ TEST checkStat from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.headers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.headers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 1 3 typedef unsigned char __mmask8; typedef unsigned short __mmask16; typedef unsigned int __mmask32; typedef unsigned __int64 __mmask64; typedef __mmask16 __mmask; # 61 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef union _MMINTRIN_TYPE(64) __m512 { float __m512_f32[16]; } __m512; typedef union _MMINTRIN_TYPE(64) __m512d { double __m512d_f64[8]; } __m512d; typedef union _MMINTRIN_TYPE(64) __m512i { __int64 m512i_gcc_compatibility[8]; __int8 m512i_i8[64]; __int16 m512i_i16[32]; __int32 m512i_i32[16]; __int64 m512i_i64[8]; unsigned __int8 m512i_u8[64]; unsigned __int16 m512i_u16[32]; unsigned __int32 m512i_u32[16]; unsigned __int64 m512i_u64[8]; int __m512i_i32[16]; } __m512i; # 106 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_SWIZ_REG_NONE, _MM_SWIZ_REG_CDAB, _MM_SWIZ_REG_BADC, _MM_SWIZ_REG_AAAA, _MM_SWIZ_REG_BBBB, _MM_SWIZ_REG_CCCC, _MM_SWIZ_REG_DDDD, _MM_SWIZ_REG_DACB } _MM_SWIZZLE_ENUM; typedef enum { _MM_BROADCAST32_NONE, _MM_BROADCAST_1X16, _MM_BROADCAST_4X16 } _MM_BROADCAST32_ENUM; typedef enum { _MM_BROADCAST64_NONE, _MM_BROADCAST_1X8, _MM_BROADCAST_4X8 } _MM_BROADCAST64_ENUM; typedef enum { _MM_ROUND_MODE_NEAREST, _MM_ROUND_MODE_DOWN, _MM_ROUND_MODE_UP, _MM_ROUND_MODE_TOWARD_ZERO, _MM_ROUND_MODE_DEFAULT } _MM_ROUND_MODE_ENUM; typedef enum { _MM_EXPADJ_NONE, _MM_EXPADJ_4, _MM_EXPADJ_5, _MM_EXPADJ_8, _MM_EXPADJ_16, _MM_EXPADJ_24, _MM_EXPADJ_31, _MM_EXPADJ_32 } _MM_EXP_ADJ_ENUM; typedef enum { _MM_SCALE_1 = 1, _MM_SCALE_2 = 2, _MM_SCALE_4 = 4, _MM_SCALE_8 = 8 } _MM_INDEX_SCALE_ENUM; typedef enum { _MM_PERM_AAAA = 0x00, _MM_PERM_AAAB = 0x01, _MM_PERM_AAAC = 0x02, _MM_PERM_AAAD = 0x03, _MM_PERM_AABA = 0x04, _MM_PERM_AABB = 0x05, _MM_PERM_AABC = 0x06, _MM_PERM_AABD = 0x07, _MM_PERM_AACA = 0x08, _MM_PERM_AACB = 0x09, _MM_PERM_AACC = 0x0A, _MM_PERM_AACD = 0x0B, _MM_PERM_AADA = 0x0C, _MM_PERM_AADB = 0x0D, _MM_PERM_AADC = 0x0E, _MM_PERM_AADD = 0x0F, _MM_PERM_ABAA = 0x10, _MM_PERM_ABAB = 0x11, _MM_PERM_ABAC = 0x12, _MM_PERM_ABAD = 0x13, _MM_PERM_ABBA = 0x14, _MM_PERM_ABBB = 0x15, _MM_PERM_ABBC = 0x16, _MM_PERM_ABBD = 0x17, _MM_PERM_ABCA = 0x18, _MM_PERM_ABCB = 0x19, _MM_PERM_ABCC = 0x1A, _MM_PERM_ABCD = 0x1B, _MM_PERM_ABDA = 0x1C, _MM_PERM_ABDB = 0x1D, _MM_PERM_ABDC = 0x1E, _MM_PERM_ABDD = 0x1F, _MM_PERM_ACAA = 0x20, _MM_PERM_ACAB = 0x21, _MM_PERM_ACAC = 0x22, _MM_PERM_ACAD = 0x23, _MM_PERM_ACBA = 0x24, _MM_PERM_ACBB = 0x25, _MM_PERM_ACBC = 0x26, _MM_PERM_ACBD = 0x27, _MM_PERM_ACCA = 0x28, _MM_PERM_ACCB = 0x29, _MM_PERM_ACCC = 0x2A, _MM_PERM_ACCD = 0x2B, _MM_PERM_ACDA = 0x2C, _MM_PERM_ACDB = 0x2D, _MM_PERM_ACDC = 0x2E, _MM_PERM_ACDD = 0x2F, _MM_PERM_ADAA = 0x30, _MM_PERM_ADAB = 0x31, _MM_PERM_ADAC = 0x32, _MM_PERM_ADAD = 0x33, _MM_PERM_ADBA = 0x34, _MM_PERM_ADBB = 0x35, _MM_PERM_ADBC = 0x36, _MM_PERM_ADBD = 0x37, _MM_PERM_ADCA = 0x38, _MM_PERM_ADCB = 0x39, _MM_PERM_ADCC = 0x3A, _MM_PERM_ADCD = 0x3B, _MM_PERM_ADDA = 0x3C, _MM_PERM_ADDB = 0x3D, _MM_PERM_ADDC = 0x3E, _MM_PERM_ADDD = 0x3F, _MM_PERM_BAAA = 0x40, _MM_PERM_BAAB = 0x41, _MM_PERM_BAAC = 0x42, _MM_PERM_BAAD = 0x43, _MM_PERM_BABA = 0x44, _MM_PERM_BABB = 0x45, _MM_PERM_BABC = 0x46, _MM_PERM_BABD = 0x47, _MM_PERM_BACA = 0x48, _MM_PERM_BACB = 0x49, _MM_PERM_BACC = 0x4A, _MM_PERM_BACD = 0x4B, _MM_PERM_BADA = 0x4C, _MM_PERM_BADB = 0x4D, _MM_PERM_BADC = 0x4E, _MM_PERM_BADD = 0x4F, _MM_PERM_BBAA = 0x50, _MM_PERM_BBAB = 0x51, _MM_PERM_BBAC = 0x52, _MM_PERM_BBAD = 0x53, _MM_PERM_BBBA = 0x54, _MM_PERM_BBBB = 0x55, _MM_PERM_BBBC = 0x56, _MM_PERM_BBBD = 0x57, _MM_PERM_BBCA = 0x58, _MM_PERM_BBCB = 0x59, _MM_PERM_BBCC = 0x5A, _MM_PERM_BBCD = 0x5B, _MM_PERM_BBDA = 0x5C, _MM_PERM_BBDB = 0x5D, _MM_PERM_BBDC = 0x5E, _MM_PERM_BBDD = 0x5F, _MM_PERM_BCAA = 0x60, _MM_PERM_BCAB = 0x61, _MM_PERM_BCAC = 0x62, _MM_PERM_BCAD = 0x63, _MM_PERM_BCBA = 0x64, _MM_PERM_BCBB = 0x65, _MM_PERM_BCBC = 0x66, _MM_PERM_BCBD = 0x67, _MM_PERM_BCCA = 0x68, _MM_PERM_BCCB = 0x69, _MM_PERM_BCCC = 0x6A, _MM_PERM_BCCD = 0x6B, _MM_PERM_BCDA = 0x6C, _MM_PERM_BCDB = 0x6D, _MM_PERM_BCDC = 0x6E, _MM_PERM_BCDD = 0x6F, _MM_PERM_BDAA = 0x70, _MM_PERM_BDAB = 0x71, _MM_PERM_BDAC = 0x72, _MM_PERM_BDAD = 0x73, _MM_PERM_BDBA = 0x74, _MM_PERM_BDBB = 0x75, _MM_PERM_BDBC = 0x76, _MM_PERM_BDBD = 0x77, _MM_PERM_BDCA = 0x78, _MM_PERM_BDCB = 0x79, _MM_PERM_BDCC = 0x7A, _MM_PERM_BDCD = 0x7B, _MM_PERM_BDDA = 0x7C, _MM_PERM_BDDB = 0x7D, _MM_PERM_BDDC = 0x7E, _MM_PERM_BDDD = 0x7F, _MM_PERM_CAAA = 0x80, _MM_PERM_CAAB = 0x81, _MM_PERM_CAAC = 0x82, _MM_PERM_CAAD = 0x83, _MM_PERM_CABA = 0x84, _MM_PERM_CABB = 0x85, _MM_PERM_CABC = 0x86, _MM_PERM_CABD = 0x87, _MM_PERM_CACA = 0x88, _MM_PERM_CACB = 0x89, _MM_PERM_CACC = 0x8A, _MM_PERM_CACD = 0x8B, _MM_PERM_CADA = 0x8C, _MM_PERM_CADB = 0x8D, _MM_PERM_CADC = 0x8E, _MM_PERM_CADD = 0x8F, _MM_PERM_CBAA = 0x90, _MM_PERM_CBAB = 0x91, _MM_PERM_CBAC = 0x92, _MM_PERM_CBAD = 0x93, _MM_PERM_CBBA = 0x94, _MM_PERM_CBBB = 0x95, _MM_PERM_CBBC = 0x96, _MM_PERM_CBBD = 0x97, _MM_PERM_CBCA = 0x98, _MM_PERM_CBCB = 0x99, _MM_PERM_CBCC = 0x9A, _MM_PERM_CBCD = 0x9B, _MM_PERM_CBDA = 0x9C, _MM_PERM_CBDB = 0x9D, _MM_PERM_CBDC = 0x9E, _MM_PERM_CBDD = 0x9F, _MM_PERM_CCAA = 0xA0, _MM_PERM_CCAB = 0xA1, _MM_PERM_CCAC = 0xA2, _MM_PERM_CCAD = 0xA3, _MM_PERM_CCBA = 0xA4, _MM_PERM_CCBB = 0xA5, _MM_PERM_CCBC = 0xA6, _MM_PERM_CCBD = 0xA7, _MM_PERM_CCCA = 0xA8, _MM_PERM_CCCB = 0xA9, _MM_PERM_CCCC = 0xAA, _MM_PERM_CCCD = 0xAB, _MM_PERM_CCDA = 0xAC, _MM_PERM_CCDB = 0xAD, _MM_PERM_CCDC = 0xAE, _MM_PERM_CCDD = 0xAF, _MM_PERM_CDAA = 0xB0, _MM_PERM_CDAB = 0xB1, _MM_PERM_CDAC = 0xB2, _MM_PERM_CDAD = 0xB3, _MM_PERM_CDBA = 0xB4, _MM_PERM_CDBB = 0xB5, _MM_PERM_CDBC = 0xB6, _MM_PERM_CDBD = 0xB7, _MM_PERM_CDCA = 0xB8, _MM_PERM_CDCB = 0xB9, _MM_PERM_CDCC = 0xBA, _MM_PERM_CDCD = 0xBB, _MM_PERM_CDDA = 0xBC, _MM_PERM_CDDB = 0xBD, _MM_PERM_CDDC = 0xBE, _MM_PERM_CDDD = 0xBF, _MM_PERM_DAAA = 0xC0, _MM_PERM_DAAB = 0xC1, _MM_PERM_DAAC = 0xC2, _MM_PERM_DAAD = 0xC3, _MM_PERM_DABA = 0xC4, _MM_PERM_DABB = 0xC5, _MM_PERM_DABC = 0xC6, _MM_PERM_DABD = 0xC7, _MM_PERM_DACA = 0xC8, _MM_PERM_DACB = 0xC9, _MM_PERM_DACC = 0xCA, _MM_PERM_DACD = 0xCB, _MM_PERM_DADA = 0xCC, _MM_PERM_DADB = 0xCD, _MM_PERM_DADC = 0xCE, _MM_PERM_DADD = 0xCF, _MM_PERM_DBAA = 0xD0, _MM_PERM_DBAB = 0xD1, _MM_PERM_DBAC = 0xD2, _MM_PERM_DBAD = 0xD3, _MM_PERM_DBBA = 0xD4, _MM_PERM_DBBB = 0xD5, _MM_PERM_DBBC = 0xD6, _MM_PERM_DBBD = 0xD7, _MM_PERM_DBCA = 0xD8, _MM_PERM_DBCB = 0xD9, _MM_PERM_DBCC = 0xDA, _MM_PERM_DBCD = 0xDB, _MM_PERM_DBDA = 0xDC, _MM_PERM_DBDB = 0xDD, _MM_PERM_DBDC = 0xDE, _MM_PERM_DBDD = 0xDF, _MM_PERM_DCAA = 0xE0, _MM_PERM_DCAB = 0xE1, _MM_PERM_DCAC = 0xE2, _MM_PERM_DCAD = 0xE3, _MM_PERM_DCBA = 0xE4, _MM_PERM_DCBB = 0xE5, _MM_PERM_DCBC = 0xE6, _MM_PERM_DCBD = 0xE7, _MM_PERM_DCCA = 0xE8, _MM_PERM_DCCB = 0xE9, _MM_PERM_DCCC = 0xEA, _MM_PERM_DCCD = 0xEB, _MM_PERM_DCDA = 0xEC, _MM_PERM_DCDB = 0xED, _MM_PERM_DCDC = 0xEE, _MM_PERM_DCDD = 0xEF, _MM_PERM_DDAA = 0xF0, _MM_PERM_DDAB = 0xF1, _MM_PERM_DDAC = 0xF2, _MM_PERM_DDAD = 0xF3, _MM_PERM_DDBA = 0xF4, _MM_PERM_DDBB = 0xF5, _MM_PERM_DDBC = 0xF6, _MM_PERM_DDBD = 0xF7, _MM_PERM_DDCA = 0xF8, _MM_PERM_DDCB = 0xF9, _MM_PERM_DDCC = 0xFA, _MM_PERM_DDCD = 0xFB, _MM_PERM_DDDA = 0xFC, _MM_PERM_DDDB = 0xFD, _MM_PERM_DDDC = 0xFE, _MM_PERM_DDDD = 0xFF } _MM_PERM_ENUM; typedef enum { _MM_FIXUP_NO_CHANGE, _MM_FIXUP_NEG_INF, _MM_FIXUP_NEG_ZERO, _MM_FIXUP_POS_ZERO, _MM_FIXUP_POS_INF, _MM_FIXUP_NAN, _MM_FIXUP_MAX_FLOAT, _MM_FIXUP_MIN_FLOAT } _MM_FIXUPRESULT_ENUM; # 298 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_PS_NONE, _MM_UPCONV_PS_FLOAT16, _MM_UPCONV_PS_UINT8, _MM_UPCONV_PS_SINT8, _MM_UPCONV_PS_UINT16, _MM_UPCONV_PS_SINT16 } _MM_UPCONV_PS_ENUM; # 343 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_EPI32_NONE, _MM_UPCONV_EPI32_UINT8, _MM_UPCONV_EPI32_SINT8, _MM_UPCONV_EPI32_UINT16, _MM_UPCONV_EPI32_SINT16 } _MM_UPCONV_EPI32_ENUM; # 368 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 375 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_PD_NONE } _MM_UPCONV_PD_ENUM; # 397 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_EPI64_NONE } _MM_UPCONV_EPI64_ENUM; # 442 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_DOWNCONV_PS_NONE, _MM_DOWNCONV_PS_FLOAT16, _MM_DOWNCONV_PS_UINT8, _MM_DOWNCONV_PS_SINT8, _MM_DOWNCONV_PS_UINT16, _MM_DOWNCONV_PS_SINT16 } _MM_DOWNCONV_PS_ENUM; typedef enum { _MM_DOWNCONV_EPI32_NONE, _MM_DOWNCONV_EPI32_UINT8, _MM_DOWNCONV_EPI32_SINT8, _MM_DOWNCONV_EPI32_UINT16, _MM_DOWNCONV_EPI32_SINT16 } _MM_DOWNCONV_EPI32_ENUM; typedef enum { _MM_DOWNCONV_PD_NONE } _MM_DOWNCONV_PD_ENUM; typedef enum { _MM_DOWNCONV_EPI64_NONE } _MM_DOWNCONV_EPI64_ENUM; # 515 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 549 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 573 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 683 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 708 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 780 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 823 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_CMPINT_EQ, _MM_CMPINT_LT, _MM_CMPINT_LE, _MM_CMPINT_UNUSED, _MM_CMPINT_NE, _MM_CMPINT_NLT, _MM_CMPINT_NLE } _MM_CMPINT_ENUM; # 848 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 873 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 881 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 906 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 913 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 943 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 956 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 986 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 999 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1040 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1073 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1091 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1142 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1227 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1278 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1334 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1421 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1478 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1500 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_MANT_NORM_1_2, _MM_MANT_NORM_p5_2, _MM_MANT_NORM_p5_1, _MM_MANT_NORM_p75_1p5 } _MM_MANTISSA_NORM_ENUM; typedef enum { _MM_MANT_SIGN_src, _MM_MANT_SIGN_zero, _MM_MANT_SIGN_nan } _MM_MANTISSA_SIGN_ENUM; # 1535 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1631 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1638 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1645 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1652 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1659 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1666 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1673 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1680 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1687 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1754 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1761 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1768 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1843 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1866 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1895 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1917 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1939 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1961 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1983 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2005 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2046 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2128 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2146 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2192 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2231 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2259 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2287 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2316 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2349 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2408 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2425 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2439 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2456 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2472 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2511 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2551 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2890 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2960 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3042 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3061 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3091 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3206 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3223 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3240 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3265 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3273 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3298 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3370 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3377 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3385 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3392 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3400 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3411 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3630 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3637 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3645 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3652 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3660 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3667 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3675 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3682 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3691 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3698 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3706 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3713 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3721 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3728 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3736 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3743 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3765 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3772 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3780 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3787 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3939 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3946 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3954 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3961 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4124 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4132 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4140 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4148 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4161 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4168 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4176 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4184 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4193 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4201 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4209 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4217 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4226 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4234 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4242 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4249 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4257 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4265 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4273 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4281 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4289 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4297 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4305 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4313 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4321 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4328 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4336 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4343 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4461 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4474 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4528 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4537 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4550 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4559 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4576 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4584 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4592 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4600 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4662 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4672 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4683 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4693 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4709 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4729 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4750 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4779 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4818 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4827 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4845 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4859 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4873 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4887 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4896 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4918 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4932 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4946 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4960 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5011 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5021 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5033 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5043 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5054 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5064 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5076 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5086 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5097 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5107 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5130 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5141 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5151 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5174 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5200 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5331 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5341 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5351 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5361 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5368 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5375 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5385 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5395 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5408 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5415 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5422 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5457 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5473 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5504 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5518 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5532 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5550 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5576 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5633 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5640 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5647 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5654 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5661 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5668 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5675 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5682 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5689 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5696 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5703 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5763 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6371 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6396 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6404 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6429 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6437 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6462 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6470 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6495 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6503 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6528 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6536 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6561 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6569 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6594 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6644 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6669 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6700 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6707 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6732 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6739 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6764 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6795 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6802 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6827 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6834 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6859 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6890 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6897 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6922 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6929 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6954 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6985 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6992 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7017 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7024 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7049 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7452 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7460 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7475 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7483 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7528 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7536 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7551 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7559 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7576 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7584 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7601 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7609 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7657 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7665 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7680 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7688 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7703 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7711 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7726 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7734 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7751 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7759 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7774 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7782 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7804 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 8763 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 8826 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 8843 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 8914 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 8932 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 10369 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 10409 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 10571 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 11189 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: In file included from /tmp/petsc-31tiaa71/config.headers/conftest.c(3): /opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: In file included from /tmp/petsc-31tiaa71/config.headers/conftest.c(3): /opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^ : Preprocess stderr after filtering: In file included from /tmp/petsc-31tiaa71/config.headers/conftest.c(3):/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^: ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 1 3 typedef unsigned char __mmask8; typedef unsigned short __mmask16; typedef unsigned int __mmask32; typedef unsigned __int64 __mmask64; typedef __mmask16 __mmask; # 61 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef union _MMINTRIN_TYPE(64) __m512 { float __m512_f32[16]; } __m512; typedef union _MMINTRIN_TYPE(64) __m512d { double __m512d_f64[8]; } __m512d; typedef union _MMINTRIN_TYPE(64) __m512i { __int64 m512i_gcc_compatibility[8]; __int8 m512i_i8[64]; __int16 m512i_i16[32]; __int32 m512i_i32[16]; __int64 m512i_i64[8]; unsigned __int8 m512i_u8[64]; unsigned __int16 m512i_u16[32]; unsigned __int32 m512i_u32[16]; unsigned __int64 m512i_u64[8]; int __m512i_i32[16]; } __m512i; # 106 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_SWIZ_REG_NONE, _MM_SWIZ_REG_CDAB, _MM_SWIZ_REG_BADC, _MM_SWIZ_REG_AAAA, _MM_SWIZ_REG_BBBB, _MM_SWIZ_REG_CCCC, _MM_SWIZ_REG_DDDD, _MM_SWIZ_REG_DACB } _MM_SWIZZLE_ENUM; typedef enum { _MM_BROADCAST32_NONE, _MM_BROADCAST_1X16, _MM_BROADCAST_4X16 } _MM_BROADCAST32_ENUM; typedef enum { _MM_BROADCAST64_NONE, _MM_BROADCAST_1X8, _MM_BROADCAST_4X8 } _MM_BROADCAST64_ENUM; typedef enum { _MM_ROUND_MODE_NEAREST, _MM_ROUND_MODE_DOWN, _MM_ROUND_MODE_UP, _MM_ROUND_MODE_TOWARD_ZERO, _MM_ROUND_MODE_DEFAULT } _MM_ROUND_MODE_ENUM; typedef enum { _MM_EXPADJ_NONE, _MM_EXPADJ_4, _MM_EXPADJ_5, _MM_EXPADJ_8, _MM_EXPADJ_16, _MM_EXPADJ_24, _MM_EXPADJ_31, _MM_EXPADJ_32 } _MM_EXP_ADJ_ENUM; typedef enum { _MM_SCALE_1 = 1, _MM_SCALE_2 = 2, _MM_SCALE_4 = 4, _MM_SCALE_8 = 8 } _MM_INDEX_SCALE_ENUM; typedef enum { _MM_PERM_AAAA = 0x00, _MM_PERM_AAAB = 0x01, _MM_PERM_AAAC = 0x02, _MM_PERM_AAAD = 0x03, _MM_PERM_AABA = 0x04, _MM_PERM_AABB = 0x05, _MM_PERM_AABC = 0x06, _MM_PERM_AABD = 0x07, _MM_PERM_AACA = 0x08, _MM_PERM_AACB = 0x09, _MM_PERM_AACC = 0x0A, _MM_PERM_AACD = 0x0B, _MM_PERM_AADA = 0x0C, _MM_PERM_AADB = 0x0D, _MM_PERM_AADC = 0x0E, _MM_PERM_AADD = 0x0F, _MM_PERM_ABAA = 0x10, _MM_PERM_ABAB = 0x11, _MM_PERM_ABAC = 0x12, _MM_PERM_ABAD = 0x13, _MM_PERM_ABBA = 0x14, _MM_PERM_ABBB = 0x15, _MM_PERM_ABBC = 0x16, _MM_PERM_ABBD = 0x17, _MM_PERM_ABCA = 0x18, _MM_PERM_ABCB = 0x19, _MM_PERM_ABCC = 0x1A, _MM_PERM_ABCD = 0x1B, _MM_PERM_ABDA = 0x1C, _MM_PERM_ABDB = 0x1D, _MM_PERM_ABDC = 0x1E, _MM_PERM_ABDD = 0x1F, _MM_PERM_ACAA = 0x20, _MM_PERM_ACAB = 0x21, _MM_PERM_ACAC = 0x22, _MM_PERM_ACAD = 0x23, _MM_PERM_ACBA = 0x24, _MM_PERM_ACBB = 0x25, _MM_PERM_ACBC = 0x26, _MM_PERM_ACBD = 0x27, _MM_PERM_ACCA = 0x28, _MM_PERM_ACCB = 0x29, _MM_PERM_ACCC = 0x2A, _MM_PERM_ACCD = 0x2B, _MM_PERM_ACDA = 0x2C, _MM_PERM_ACDB = 0x2D, _MM_PERM_ACDC = 0x2E, _MM_PERM_ACDD = 0x2F, _MM_PERM_ADAA = 0x30, _MM_PERM_ADAB = 0x31, _MM_PERM_ADAC = 0x32, _MM_PERM_ADAD = 0x33, _MM_PERM_ADBA = 0x34, _MM_PERM_ADBB = 0x35, _MM_PERM_ADBC = 0x36, _MM_PERM_ADBD = 0x37, _MM_PERM_ADCA = 0x38, _MM_PERM_ADCB = 0x39, _MM_PERM_ADCC = 0x3A, _MM_PERM_ADCD = 0x3B, _MM_PERM_ADDA = 0x3C, _MM_PERM_ADDB = 0x3D, _MM_PERM_ADDC = 0x3E, _MM_PERM_ADDD = 0x3F, _MM_PERM_BAAA = 0x40, _MM_PERM_BAAB = 0x41, _MM_PERM_BAAC = 0x42, _MM_PERM_BAAD = 0x43, _MM_PERM_BABA = 0x44, _MM_PERM_BABB = 0x45, _MM_PERM_BABC = 0x46, _MM_PERM_BABD = 0x47, _MM_PERM_BACA = 0x48, _MM_PERM_BACB = 0x49, _MM_PERM_BACC = 0x4A, _MM_PERM_BACD = 0x4B, _MM_PERM_BADA = 0x4C, _MM_PERM_BADB = 0x4D, _MM_PERM_BADC = 0x4E, _MM_PERM_BADD = 0x4F, _MM_PERM_BBAA = 0x50, _MM_PERM_BBAB = 0x51, _MM_PERM_BBAC = 0x52, _MM_PERM_BBAD = 0x53, _MM_PERM_BBBA = 0x54, _MM_PERM_BBBB = 0x55, _MM_PERM_BBBC = 0x56, _MM_PERM_BBBD = 0x57, _MM_PERM_BBCA = 0x58, _MM_PERM_BBCB = 0x59, _MM_PERM_BBCC = 0x5A, _MM_PERM_BBCD = 0x5B, _MM_PERM_BBDA = 0x5C, _MM_PERM_BBDB = 0x5D, _MM_PERM_BBDC = 0x5E, _MM_PERM_BBDD = 0x5F, _MM_PERM_BCAA = 0x60, _MM_PERM_BCAB = 0x61, _MM_PERM_BCAC = 0x62, _MM_PERM_BCAD = 0x63, _MM_PERM_BCBA = 0x64, _MM_PERM_BCBB = 0x65, _MM_PERM_BCBC = 0x66, _MM_PERM_BCBD = 0x67, _MM_PERM_BCCA = 0x68, _MM_PERM_BCCB = 0x69, _MM_PERM_BCCC = 0x6A, _MM_PERM_BCCD = 0x6B, _MM_PERM_BCDA = 0x6C, _MM_PERM_BCDB = 0x6D, _MM_PERM_BCDC = 0x6E, _MM_PERM_BCDD = 0x6F, _MM_PERM_BDAA = 0x70, _MM_PERM_BDAB = 0x71, _MM_PERM_BDAC = 0x72, _MM_PERM_BDAD = 0x73, _MM_PERM_BDBA = 0x74, _MM_PERM_BDBB = 0x75, _MM_PERM_BDBC = 0x76, _MM_PERM_BDBD = 0x77, _MM_PERM_BDCA = 0x78, _MM_PERM_BDCB = 0x79, _MM_PERM_BDCC = 0x7A, _MM_PERM_BDCD = 0x7B, _MM_PERM_BDDA = 0x7C, _MM_PERM_BDDB = 0x7D, _MM_PERM_BDDC = 0x7E, _MM_PERM_BDDD = 0x7F, _MM_PERM_CAAA = 0x80, _MM_PERM_CAAB = 0x81, _MM_PERM_CAAC = 0x82, _MM_PERM_CAAD = 0x83, _MM_PERM_CABA = 0x84, _MM_PERM_CABB = 0x85, _MM_PERM_CABC = 0x86, _MM_PERM_CABD = 0x87, _MM_PERM_CACA = 0x88, _MM_PERM_CACB = 0x89, _MM_PERM_CACC = 0x8A, _MM_PERM_CACD = 0x8B, _MM_PERM_CADA = 0x8C, _MM_PERM_CADB = 0x8D, _MM_PERM_CADC = 0x8E, _MM_PERM_CADD = 0x8F, _MM_PERM_CBAA = 0x90, _MM_PERM_CBAB = 0x91, _MM_PERM_CBAC = 0x92, _MM_PERM_CBAD = 0x93, _MM_PERM_CBBA = 0x94, _MM_PERM_CBBB = 0x95, _MM_PERM_CBBC = 0x96, _MM_PERM_CBBD = 0x97, _MM_PERM_CBCA = 0x98, _MM_PERM_CBCB = 0x99, _MM_PERM_CBCC = 0x9A, _MM_PERM_CBCD = 0x9B, _MM_PERM_CBDA = 0x9C, _MM_PERM_CBDB = 0x9D, _MM_PERM_CBDC = 0x9E, _MM_PERM_CBDD = 0x9F, _MM_PERM_CCAA = 0xA0, _MM_PERM_CCAB = 0xA1, _MM_PERM_CCAC = 0xA2, _MM_PERM_CCAD = 0xA3, _MM_PERM_CCBA = 0xA4, _MM_PERM_CCBB = 0xA5, _MM_PERM_CCBC = 0xA6, _MM_PERM_CCBD = 0xA7, _MM_PERM_CCCA = 0xA8, _MM_PERM_CCCB = 0xA9, _MM_PERM_CCCC = 0xAA, _MM_PERM_CCCD = 0xAB, _MM_PERM_CCDA = 0xAC, _MM_PERM_CCDB = 0xAD, _MM_PERM_CCDC = 0xAE, _MM_PERM_CCDD = 0xAF, _MM_PERM_CDAA = 0xB0, _MM_PERM_CDAB = 0xB1, _MM_PERM_CDAC = 0xB2, _MM_PERM_CDAD = 0xB3, _MM_PERM_CDBA = 0xB4, _MM_PERM_CDBB = 0xB5, _MM_PERM_CDBC = 0xB6, _MM_PERM_CDBD = 0xB7, _MM_PERM_CDCA = 0xB8, _MM_PERM_CDCB = 0xB9, _MM_PERM_CDCC = 0xBA, _MM_PERM_CDCD = 0xBB, _MM_PERM_CDDA = 0xBC, _MM_PERM_CDDB = 0xBD, _MM_PERM_CDDC = 0xBE, _MM_PERM_CDDD = 0xBF, _MM_PERM_DAAA = 0xC0, _MM_PERM_DAAB = 0xC1, _MM_PERM_DAAC = 0xC2, _MM_PERM_DAAD = 0xC3, _MM_PERM_DABA = 0xC4, _MM_PERM_DABB = 0xC5, _MM_PERM_DABC = 0xC6, _MM_PERM_DABD = 0xC7, _MM_PERM_DACA = 0xC8, _MM_PERM_DACB = 0xC9, _MM_PERM_DACC = 0xCA, _MM_PERM_DACD = 0xCB, _MM_PERM_DADA = 0xCC, _MM_PERM_DADB = 0xCD, _MM_PERM_DADC = 0xCE, _MM_PERM_DADD = 0xCF, _MM_PERM_DBAA = 0xD0, _MM_PERM_DBAB = 0xD1, _MM_PERM_DBAC = 0xD2, _MM_PERM_DBAD = 0xD3, _MM_PERM_DBBA = 0xD4, _MM_PERM_DBBB = 0xD5, _MM_PERM_DBBC = 0xD6, _MM_PERM_DBBD = 0xD7, _MM_PERM_DBCA = 0xD8, _MM_PERM_DBCB = 0xD9, _MM_PERM_DBCC = 0xDA, _MM_PERM_DBCD = 0xDB, _MM_PERM_DBDA = 0xDC, _MM_PERM_DBDB = 0xDD, _MM_PERM_DBDC = 0xDE, _MM_PERM_DBDD = 0xDF, _MM_PERM_DCAA = 0xE0, _MM_PERM_DCAB = 0xE1, _MM_PERM_DCAC = 0xE2, _MM_PERM_DCAD = 0xE3, _MM_PERM_DCBA = 0xE4, _MM_PERM_DCBB = 0xE5, _MM_PERM_DCBC = 0xE6, _MM_PERM_DCBD = 0xE7, _MM_PERM_DCCA = 0xE8, _MM_PERM_DCCB = 0xE9, _MM_PERM_DCCC = 0xEA, _MM_PERM_DCCD = 0xEB, _MM_PERM_DCDA = 0xEC, _MM_PERM_DCDB = 0xED, _MM_PERM_DCDC = 0xEE, _MM_PERM_DCDD = 0xEF, _MM_PERM_DDAA = 0xF0, _MM_PERM_DDAB = 0xF1, _MM_PERM_DDAC = 0xF2, _MM_PERM_DDAD = 0xF3, _MM_PERM_DDBA = 0xF4, _MM_PERM_DDBB = 0xF5, _MM_PERM_DDBC = 0xF6, _MM_PERM_DDBD = 0xF7, _MM_PERM_DDCA = 0xF8, _MM_PERM_DDCB = 0xF9, _MM_PERM_DDCC = 0xFA, _MM_PERM_DDCD = 0xFB, _MM_PERM_DDDA = 0xFC, _MM_PERM_DDDB = 0xFD, _MM_PERM_DDDC = 0xFE, _MM_PERM_DDDD = 0xFF } _MM_PERM_ENUM; typedef enum { _MM_FIXUP_NO_CHANGE, _MM_FIXUP_NEG_INF, _MM_FIXUP_NEG_ZERO, _MM_FIXUP_POS_ZERO, _MM_FIXUP_POS_INF, _MM_FIXUP_NAN, _MM_FIXUP_MAX_FLOAT, _MM_FIXUP_MIN_FLOAT } _MM_FIXUPRESULT_ENUM; # 298 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_PS_NONE, _MM_UPCONV_PS_FLOAT16, _MM_UPCONV_PS_UINT8, _MM_UPCONV_PS_SINT8, _MM_UPCONV_PS_UINT16, _MM_UPCONV_PS_SINT16 } _MM_UPCONV_PS_ENUM; # 343 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_EPI32_NONE, _MM_UPCONV_EPI32_UINT8, _MM_UPCONV_EPI32_SINT8, _MM_UPCONV_EPI32_UINT16, _MM_UPCONV_EPI32_SINT16 } _MM_UPCONV_EPI32_ENUM; # 368 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 375 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_PD_NONE } _MM_UPCONV_PD_ENUM; # 397 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_EPI64_NONE } _MM_UPCONV_EPI64_ENUM; # 442 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_DOWNCONV_PS_NONE, _MM_DOWNCONV_PS_FLOAT16, _MM_DOWNCONV_PS_UINT8, _MM_DOWNCONV_PS_SINT8, _MM_DOWNCONV_PS_UINT16, _MM_DOWNCONV_PS_SINT16 } _MM_DOWNCONV_PS_ENUM; typedef enum { _MM_DOWNCONV_EPI32_NONE, _MM_DOWNCONV_EPI32_UINT8, _MM_DOWNCONV_EPI32_SINT8, _MM_DOWNCONV_EPI32_UINT16, _MM_DOWNCONV_EPI32_SINT16 } _MM_DOWNCONV_EPI32_ENUM; typedef enum { _MM_DOWNCONV_PD_NONE } _MM_DOWNCONV_PD_ENUM; typedef enum { _MM_DOWNCONV_EPI64_NONE } _MM_DOWNCONV_EPI64_ENUM; # 515 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 549 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 573 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 683 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 708 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 780 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 823 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_CMPINT_EQ, _MM_CMPINT_LT, _MM_CMPINT_LE, _MM_CMPINT_UNUSED, _MM_CMPINT_NE, _MM_CMPINT_NLT, _MM_CMPINT_NLE } _MM_CMPINT_ENUM; # 848 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 873 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 881 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 906 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 913 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 943 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 956 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 986 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 999 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1040 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1073 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1091 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1142 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1227 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1278 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1334 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1421 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1478 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1500 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_MANT_NORM_1_2, _MM_MANT_NORM_p5_2, _MM_MANT_NORM_p5_1, _MM_MANT_NORM_p75_1p5 } _MM_MANTISSA_NORM_ENUM; typedef enum { _MM_MANT_SIGN_src, _MM_MANT_SIGN_zero, _MM_MANT_SIGN_nan } _MM_MANTISSA_SIGN_ENUM; # 1535 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1631 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1638 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1645 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1652 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1659 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1666 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1673 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1680 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1687 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1754 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1761 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1768 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1843 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1866 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1895 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1917 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1939 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1961 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 1983 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2005 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2046 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2128 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2146 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2192 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2231 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2259 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2287 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2316 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2349 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2408 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2425 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2439 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2456 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2472 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2511 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2551 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2890 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 2960 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3042 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3061 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3091 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3206 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3223 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3240 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3265 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"/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3645 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3652 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3660 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3667 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3675 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3682 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3691 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3698 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3706 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3713 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3721 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3728 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3736 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3743 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3765 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3772 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3780 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3787 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3939 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3946 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3954 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 3961 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4124 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4132 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4140 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4148 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4161 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4168 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4176 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4184 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4193 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4201 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4209 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4217 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4226 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4234 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4242 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4249 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4257 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4265 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4273 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4281 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4289 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4297 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4305 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4313 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4321 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4328 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4336 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4343 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"/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5141 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5151 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5174 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5200 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5331 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5341 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5351 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5361 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5368 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5375 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5385 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5395 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5408 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5415 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5422 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5457 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5473 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5504 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5518 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5532 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5550 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5576 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5633 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5640 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5647 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5654 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5661 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5668 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5675 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5682 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5689 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5696 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5703 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 5763 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6371 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6396 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6404 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6429 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6437 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6462 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6470 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6495 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6503 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6528 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6536 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6561 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6569 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6594 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6644 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6669 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6700 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6707 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6732 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6739 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6764 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6795 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6802 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6827 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6834 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6859 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6890 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6897 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6922 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6929 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6954 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6985 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 6992 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7017 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7024 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7049 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7452 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7460 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7475 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7483 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7528 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7536 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7551 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7559 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7576 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7584 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7601 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7609 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7657 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7665 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7680 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7688 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7703 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7711 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7726 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7734 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7751 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7759 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7774 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7782 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 7804 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 8763 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 8826 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 8843 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 8914 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 8932 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 10369 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 10409 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 10571 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 11189 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h" 3 # 4 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: In file included from /tmp/petsc-31tiaa71/config.headers/conftest.c(3): /opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: In file included from /tmp/petsc-31tiaa71/config.headers/conftest.c(3): /opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^ : Preprocess stderr after filtering: In file included from /tmp/petsc-31tiaa71/config.headers/conftest.c(3):/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^: ================================================================================ TEST checkRecursiveMacros from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.headers/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -fPIC -g -O2 /tmp/petsc-31tiaa71/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 244.643839 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /tmp/petsc-31tiaa71/config.utilities.cacheDetails Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Skipping determination of LEVEL1_DCACHE_LINESIZE in batch mode, using default 32 Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 3.801419 ================================================================================ TEST check_struct_sigaction from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:43) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:43) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /tmp/petsc-31tiaa71/config.types Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:49) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:49) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found Defined "HAVE___INT64" to "1" ================================================================================ TEST checkSizeTypes from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:55) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:55) Checks for types associated with sizes, such as size_t. Checking for type: size_t Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:65) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:65) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:60) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:60) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:71) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:71) Checks for pid_t, and defines it if necessary Checking for type: pid_t Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:75) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:75) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.types /tmp/petsc-31tiaa71/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:82) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:82) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.types/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:93) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:93) Check for complex numbers in namespace std Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.types -g -O2 -fPIC /tmp/petsc-31tiaa71/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.types/conftest -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkConst from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:104) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:104) Checks for working const, and if not found defines it to empty string Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ================================================================================ TEST checkSizeof from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkVisibility from config.types(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/types.py:194) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:194) Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.types/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.types -g -O2 -fPIC /tmp/petsc-31tiaa71/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" child config.types 139.271547 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.104841 ================================================================================ TEST check from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe ================================================================================ TEST check from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl ================================================================================ TEST check from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe ================================================================================ TEST check from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl ================================================================================ TEST checkMath from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl CheckMath: using math library [] ================================================================================ TEST checkMathErf from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathLgamma from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:301) TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:314) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:322) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:331) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:347) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 116.347651 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Running Executable WITHOUT threads to time it out Executing: cc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.libraries/conftest.o: in function `_check_bgl_perfctr_void': /tmp/petsc-31tiaa71/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' Checking for functions [ADIOI_BGL_Open] in library [''] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open': /tmp/petsc-31tiaa71/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 24.599734 child config.atomics 0.000046 ================================================================================ TEST checkSysinfo from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /tmp/petsc-31tiaa71/config.functions Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-31tiaa71/config.functions/conftest.c(9): error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ /tmp/petsc-31tiaa71/config.functions/conftest.c(13): warning #266: function "sysinfo" declared implicitly char buf[10]; long count=10; sysinfo(1, buf, count); ^ compilation aborted for /tmp/petsc-31tiaa71/config.functions/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -g -O2 -fPIC /tmp/petsc-31tiaa71/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.functions/conftest -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-31tiaa71/config.functions/conftest.c(6): error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ compilation aborted for /tmp/petsc-31tiaa71/config.functions/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [_snprintf snprintf PXFGETARG popen time _pipe gethostname clock access lseek dlerror sleep _getcwd _sleep usleep fork stricmp _mkdir memalign sbreak _set_output_format strcasecmp readlink gethostbyname dlclose socket rand getdomainname getrusage _access getpagesize drand48 dlsym realpath getwd getcwd bzero dlopen _lseek uname] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); char snprintf(); char PXFGETARG(); char popen(); char time(); char _pipe(); char gethostname(); char clock(); char access(); char lseek(); char dlerror(); char sleep(); char _getcwd(); char _sleep(); char usleep(); char fork(); char stricmp(); char _mkdir(); char memalign(); char sbreak(); char _set_output_format(); char strcasecmp(); char readlink(); char gethostbyname(); char dlclose(); char socket(); char rand(); char getdomainname(); char getrusage(); char _access(); char getpagesize(); char drand48(); char dlsym(); char realpath(); char getwd(); char getcwd(); char bzero(); char dlopen(); char _lseek(); char uname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:267: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:63: undefined reference to `_snprintf' /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:75: undefined reference to `PXFGETARG' /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:93: undefined reference to `_pipe' /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:135: undefined reference to `_getcwd' /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:141: undefined reference to `_sleep' /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:159: undefined reference to `stricmp' /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:165: undefined reference to `_mkdir' /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:177: undefined reference to `sbreak' /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:183: undefined reference to `_set_output_format' /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:237: undefined reference to `_access' /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.c:291: undefined reference to `_lseek' Checking for functions [popen time gethostname clock dlerror usleep fork memalign strcasecmp readlink gethostbyname] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); char time(); char gethostname(); char clock(); char dlerror(); char usleep(); char fork(); char memalign(); char strcasecmp(); char readlink(); char gethostbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_POPEN" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Checking for functions [dlclose socket rand getdomainname getrusage getpagesize drand48 dlsym realpath bzero dlopen uname] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlclose(); char socket(); char rand(); char getdomainname(); char getrusage(); char getpagesize(); char drand48(); char dlsym(); char realpath(); char bzero(); char dlopen(); char uname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_UNAME" to "1" Checking for functions [_snprintf] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `_snprintf' Checking for functions [snprintf] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [PXFGETARG] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `PXFGETARG' Checking for functions [_pipe] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `_pipe' Checking for functions [access] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [lseek] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [sleep] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_getcwd] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `_getcwd' Checking for functions [_sleep] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `_sleep' Checking for functions [stricmp] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `stricmp' Checking for functions [_mkdir] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `_mkdir' Checking for functions [sbreak] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `sbreak' Checking for functions [_set_output_format] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `_set_output_format' Checking for functions [_access] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `_access' Checking for functions [getwd] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [getcwd] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_lseek] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.functions/conftest.o: in function `main': /tmp/petsc-31tiaa71/config.functions/conftest.c:24: undefined reference to `_lseek' ================================================================================ TEST checkMmap from config.functions(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.functions/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.functions/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 284.982973 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage child config.utilities.getResidentSetSize 0.006189 ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -I/tmp/petsc-31tiaa71/config.libraries -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 9.600913 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-31tiaa71/config.utilities.featureTestMacros Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.c(4): catastrophic error: cannot open source file "sysctl.h" #include ^ compilation aborted for /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: stderr: In file included from /usr/include/bits/libc-header-start.h(33), from /usr/include/stdlib.h(25), from /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.c(4): /usr/include/features.h(183): warning #1224: #warning directive: "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^ Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 14.580601 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /tmp/petsc-31tiaa71/config.utilities.missing Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.missing -g -O2 -fPIC /tmp/petsc-31tiaa71/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -lstdc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -fPIC -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.missing -g -O2 -fPIC /tmp/petsc-31tiaa71/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.utilities.missing/conftest -g -O2 /tmp/petsc-31tiaa71/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 106.487113 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^: child config.utilities.FPTrap 9.379772 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real All intermediate test results are stored in /tmp/petsc-31tiaa71/PETSc.options.scalarTypes Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -fPIC -g -O2 /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -fPIC -g -O2 /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -fPIC -g -O2 /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-31tiaa71/config.libraries/conftest.c(4): catastrophic error: cannot open source file "quadmath.h" #include ^ compilation aborted for /tmp/petsc-31tiaa71/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 34.154223 ================================================================================ TEST configureMkdir from config.programs(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/mkdir...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/mkdir...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/mkdir...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/mkdir...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/mkdir...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/mkdir...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/mkdir...not found Checking for program /opt/cray/alps/default/bin/mkdir...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/mkdir...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/mkdir...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/mkdir...not found Checking for program /global/common/cori/software/altd/2.0/bin/mkdir...not found Checking for program /usr/common/software/bin/mkdir...not found Checking for program /usr/common/mss/bin/mkdir...not found Checking for program /usr/common/nsg/bin/mkdir...not found Checking for program /opt/ovis/bin/mkdir...not found Checking for program /opt/ovis/sbin/mkdir...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Running Executable WITHOUT threads to time it out Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/autoreconf...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/autoreconf...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/autoreconf...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/autoreconf...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/autoreconf...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/autoreconf...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/autoreconf...not found Checking for program /opt/cray/alps/default/bin/autoreconf...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/autoreconf...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/autoreconf...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/autoreconf...not found Checking for program /global/common/cori/software/altd/2.0/bin/autoreconf...not found Checking for program /usr/common/software/bin/autoreconf...not found Checking for program /usr/common/mss/bin/autoreconf...not found Checking for program /usr/common/nsg/bin/autoreconf...not found Checking for program /opt/ovis/bin/autoreconf...not found Checking for program /opt/ovis/sbin/autoreconf...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-31tiaa71/config.programs Running Executable WITHOUT threads to time it out Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/libtoolize...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/sh...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/sh...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/sh...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/sh...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/sh...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/sh...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/sh...not found Checking for program /opt/cray/alps/default/bin/sh...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/sh...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/sh...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/sh...not found Checking for program /global/common/cori/software/altd/2.0/bin/sh...not found Checking for program /usr/common/software/bin/sh...not found Checking for program /usr/common/mss/bin/sh...not found Checking for program /usr/common/nsg/bin/sh...not found Checking for program /opt/ovis/bin/sh...not found Checking for program /opt/ovis/sbin/sh...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/sed...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/sed...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/sed...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/sed...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/sed...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/sed...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/sed...not found Checking for program /opt/cray/alps/default/bin/sed...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/sed...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/sed...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/sed...not found Checking for program /global/common/cori/software/altd/2.0/bin/sed...not found Checking for program /usr/common/software/bin/sed...not found Checking for program /usr/common/mss/bin/sed...not found Checking for program /usr/common/nsg/bin/sed...not found Checking for program /opt/ovis/bin/sed...not found Checking for program /opt/ovis/sbin/sed...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Running Executable WITHOUT threads to time it out Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-31tiaa71/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/mv...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/mv...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/mv...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/mv...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/mv...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/mv...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/mv...not found Checking for program /opt/cray/alps/default/bin/mv...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/mv...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/mv...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/mv...not found Checking for program /global/common/cori/software/altd/2.0/bin/mv...not found Checking for program /usr/common/software/bin/mv...not found Checking for program /usr/common/mss/bin/mv...not found Checking for program /usr/common/nsg/bin/mv...not found Checking for program /opt/ovis/bin/mv...not found Checking for program /opt/ovis/sbin/mv...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/cp...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/cp...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/cp...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cp...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/cp...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/cp...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/cp...not found Checking for program /opt/cray/alps/default/bin/cp...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/cp...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/cp...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/cp...not found Checking for program /global/common/cori/software/altd/2.0/bin/cp...not found Checking for program /usr/common/software/bin/cp...not found Checking for program /usr/common/mss/bin/cp...not found Checking for program /usr/common/nsg/bin/cp...not found Checking for program /opt/ovis/bin/cp...not found Checking for program /opt/ovis/sbin/cp...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/grep...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/grep...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/grep...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/grep...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/grep...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/grep...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/grep...not found Checking for program /opt/cray/alps/default/bin/grep...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/grep...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/grep...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/grep...not found Checking for program /global/common/cori/software/altd/2.0/bin/grep...not found Checking for program /usr/common/software/bin/grep...not found Checking for program /usr/common/mss/bin/grep...not found Checking for program /usr/common/nsg/bin/grep...not found Checking for program /opt/ovis/bin/grep...not found Checking for program /opt/ovis/sbin/grep...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/rm...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/rm...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/rm...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/rm...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/rm...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/rm...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/rm...not found Checking for program /opt/cray/alps/default/bin/rm...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/rm...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/rm...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/rm...not found Checking for program /global/common/cori/software/altd/2.0/bin/rm...not found Checking for program /usr/common/software/bin/rm...not found Checking for program /usr/common/mss/bin/rm...not found Checking for program /usr/common/nsg/bin/rm...not found Checking for program /opt/ovis/bin/rm...not found Checking for program /opt/ovis/sbin/rm...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/diff...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/diff...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/diff...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/diff...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/diff...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/diff...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/diff...not found Checking for program /opt/cray/alps/default/bin/diff...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/diff...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/diff...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/diff...not found Checking for program /global/common/cori/software/altd/2.0/bin/diff...not found Checking for program /usr/common/software/bin/diff...not found Checking for program /usr/common/mss/bin/diff...not found Checking for program /usr/common/nsg/bin/diff...not found Checking for program /opt/ovis/bin/diff...not found Checking for program /opt/ovis/sbin/diff...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Running Executable WITHOUT threads to time it out Executing: "/usr/bin/diff" -w "/tmp/petsc-31tiaa71/config.programs/diff1" "/tmp/petsc-31tiaa71/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /global/homes/m/madams/petsc_install/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Defined make macro "PYTHON" to "/usr/common/software/python/3.7-anaconda-2019.10/bin/python" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/m4...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/m4...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/m4...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/m4...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/m4...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/m4...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/m4...not found Checking for program /opt/cray/alps/default/bin/m4...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/m4...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/m4...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/m4...not found Checking for program /global/common/cori/software/altd/2.0/bin/m4...not found Checking for program /usr/common/software/bin/m4...not found Checking for program /usr/common/mss/bin/m4...not found Checking for program /usr/common/nsg/bin/m4...not found Checking for program /opt/ovis/bin/m4...not found Checking for program /opt/ovis/sbin/m4...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 9.524073 ================================================================================ TEST configureMake from config.packages.make(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/make.py:87) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:87) Check Guesses for GNU make Running Executable WITHOUT threads to time it out Executing: gmake --version stdout: GNU Make 4.2.1 Built for x86_64-suse-linux-gnu Copyright (C) 1988-2016 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/gmake...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/gmake...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/gmake...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/gmake...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/gmake...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/gmake...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/gmake...not found Checking for program /opt/cray/alps/default/bin/gmake...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/gmake...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/gmake...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/gmake...not found Checking for program /global/common/cori/software/altd/2.0/bin/gmake...not found Checking for program /usr/common/software/bin/gmake...not found Checking for program /usr/common/mss/bin/gmake...not found Checking for program /usr/common/nsg/bin/gmake...not found Checking for program /opt/ovis/bin/gmake...not found Checking for program /opt/ovis/sbin/gmake...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" ================================================================================ TEST setupGNUMake from config.packages.make(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/make.py:121) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:121) Setup other GNU make stuff Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ================================================================================ TEST configureMakeNP from config.packages.make(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/make.py:168) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:168) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 272 cores: using make_np = 102 Defined make macro "MAKE_NP" to "102" Defined make macro "MAKE_TEST_NP" to "100" Defined make macro "MAKE_LOAD" to "324.8" Defined make macro "NPMAX" to "272" child config.packages.make 1.311006 ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.006470 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.085496 ================================================================================ TEST checkDependencies from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:616) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:616) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MPI: ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Found header files [] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking for headers ['mpi.h'] in Compiler specific search MPI: ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers -I/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include -I/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include -I/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include -I/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include -I/opt/cray/pe/pmi/5.0.14/include -I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include -I/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include -I/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include -I/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include -I/opt/cray-hss-devel/9.0.0/include /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkMPIDistro from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:477) TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:477) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /tmp/petsc-31tiaa71/config.packages.MPI Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c(4): error: identifier "I_MPI_VERSION" is undefined const char *mpich_ver = I_MPI_VERSION; ^ compilation aborted for /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c(4): error: identifier "I_MPI_NUMVERSION" is undefined int mpich_ver = I_MPI_NUMVERSION; ^ compilation aborted for /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c(4): error: identifier "MVAPICH2_NUMVERSION" is undefined int mpich_ver = MVAPICH2_NUMVERSION; ^ compilation aborted for /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.packages.MPI /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30200300" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST configureMPI2 from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:252) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:252) Check for functions added to the interface in MPI-2 Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:297) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:297) Check for functions added to the interface in MPI-3 Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:174) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:174) Checking for location of mpiexec =============================================================================== --with-mpiexec is ignored since --with-batch is provided; one cannot run generated executables on the compile server =============================================================================== Defined make macro "MPIEXEC" to "Not_appropriate_for_batch_systems_You_must_use_your_batch_system_to_submit_MPI_jobs_speak_with_your_local_sys_admin" ================================================================================ TEST configureMPITypes from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:344) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:344) Checking for MPI Datatype handles Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } =============================================================================== ***** WARNING: Cannot determine if MPI_LONG_DOUBLE works on your system in batch-mode! Assuming it does work. Run with --known-mpi-long-double=0 if you know it does not work (very unlikely). Run with --known-mpi-long-double=1 to remove this warning message ***** =============================================================================== Defined "HAVE_MPI_LONG_DOUBLE" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } =============================================================================== ***** WARNING: Cannot determine if MPI_INT64_T works on your system in batch-mode! Assuming it does work. Run with --known-mpi-int64_t=0 if you know it does not work (very unlikely). Run with --known-mpi-int64_t=1 to remove this warning message ***** =============================================================================== Defined "HAVE_MPI_INT64_T" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } =============================================================================== ***** WARNING: Cannot determine if MPI_C_DOUBLE_COMPLEX works on your system in batch-mode! Assuming it does work. Run with --known-mpi-c-double-complex=0 if you know it does not work (very unlikely). Run with --known-mpi-c-double-complex=1 to remove this warning message ***** =============================================================================== Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" ================================================================================ TEST SGIMPICheck from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:405) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:405) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier': /tmp/petsc-31tiaa71/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:415) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:415) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Running Executable WITHOUT threads to time it out Executing: CC -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/config.libraries -g -O2 -fPIC /tmp/petsc-31tiaa71/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Running Executable WITHOUT threads to time it out Executing: CC -o /tmp/petsc-31tiaa71/config.libraries/conftest -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl ================================================================================ TEST FortranMPICheck from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:431) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:431) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -I/tmp/petsc-31tiaa71/config.libraries -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Checking for mpi.mod Checking for functions [] in library [] [] Running Executable WITHOUT threads to time it out Executing: ftn -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilersFortran -I/tmp/petsc-31tiaa71/config.libraries -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Running Executable WITHOUT threads to time it out Executing: ftn -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_F90MODULE" to "1" ================================================================================ TEST configureIO from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:453) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:453) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:557) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:557) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ================================================================================ TEST PetscArchMPICheck from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/MPI.py:591) TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:591) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.libraries/conftest.o: in function `_check_MPIX_Iallreduce': /tmp/petsc-31tiaa71/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' Checking for functions [MPIX_Ibarrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-31tiaa71/config.libraries/conftest.o: in function `_check_MPIX_Ibarrier': /tmp/petsc-31tiaa71/config.libraries/conftest.c:5: undefined reference to `MPIX_Ibarrier' Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.packages.MPI/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ================================================================================ TEST checkVersion from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.packages.MPI /tmp/petsc-31tiaa71/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.MPI 268.973409 ================================================================================ TEST alternateConfigureLibrary from config.packages.zstd(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.010710 ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.008805 ================================================================================ TEST configureLibrary from config.packages.valgrind(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Found header files [] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.packages.MPI -I/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include -I/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include -I/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include -I/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include -I/opt/cray/pe/pmi/5.0.14/include -I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include -I/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include -I/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include -I/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include -I/opt/cray-hss-devel/9.0.0/include /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Found header files [] in ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.packages.MPI -I/usr/local/include -I/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include -I/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include -I/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include -I/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include -I/opt/cray/pe/pmi/5.0.14/include -I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include -I/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include -I/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include -I/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include -I/opt/cray-hss-devel/9.0.0/include /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Found header files [] in ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.packages.MPI -I/usr/local/include -I/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include -I/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include -I/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include -I/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include -I/opt/cray/pe/pmi/5.0.14/include -I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include -I/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include -I/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include -I/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include -I/opt/cray-hss-devel/9.0.0/include /tmp/petsc-31tiaa71/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 # 1 "/tmp/petsc-31tiaa71/config.headers/conffix.h" 1 # 3 "/tmp/petsc-31tiaa71/config.headers/conftest.c" 2 stderr: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-31tiaa71/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux =============================================================================== It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure =============================================================================== child config.packages.valgrind 10.614901 ================================================================================ TEST alternateConfigureLibrary from config.packages.ssl(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.010834 ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.006868 PETSc clone, checking for Sowing Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/pdflatex...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/pdflatex...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/pdflatex...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/pdflatex...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/pdflatex...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/pdflatex...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/pdflatex...not found Checking for program /opt/cray/alps/default/bin/pdflatex...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/pdflatex...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/pdflatex...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/pdflatex...not found Checking for program /global/common/cori/software/altd/2.0/bin/pdflatex...not found Checking for program /usr/common/software/bin/pdflatex...not found Checking for program /usr/common/mss/bin/pdflatex...not found Checking for program /usr/common/nsg/bin/pdflatex...not found Checking for program /opt/ovis/bin/pdflatex...not found Checking for program /opt/ovis/sbin/pdflatex...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...found Defined make macro "PDFLATEX" to "/usr/bin/pdflatex" Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/bfort...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/bfort...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/bfort...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/bfort...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/bfort...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/bfort...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/bfort...not found Checking for program /opt/cray/alps/default/bin/bfort...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/bfort...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/bfort...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/bfort...not found Checking for program /global/common/cori/software/altd/2.0/bin/bfort...not found Checking for program /usr/common/software/bin/bfort...not found Checking for program /usr/common/mss/bin/bfort...not found Checking for program /usr/common/nsg/bin/bfort...not found Checking for program /opt/ovis/bin/bfort...not found Checking for program /opt/ovis/sbin/bfort...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/lib/mit/bin/bfort...not found Checking for program /usr/lib/mit/sbin/bfort...not found Checking for program /opt/cray/pe/bin/bfort...not found Checking for program /global/homes/m/madams/petsc_install/petsc/lib/petsc/bin/win32fe/bfort...not found Unable to find programs ['bfort'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['ddt-mpirun', 'forge', 'ddt', 'perf-report', 'forge-probe', 'map', 'forge-client', 'allinea-client', 'make-profiler-libraries', 'forge-mpirun', 'ddt-client'] ['qmlmin', 'iptest3', 'dask-mpi', 'sdbadmin', 'gss-client', 'cs2cs', 'ristosds', 'fc-scan', 'jupyter-kernel', 'navigator-updater', 'curl-config', 'bzgrep', 'xsltproc', 'jupyter-serverextension', 'lz4', 'runxlrd.py', 'pydoc', 'elbadmin', 'perror', 'dask-remote', 'geos-config', 'fitsheader', 'h5import', 'f2py', 'gif2hdf', 'fc-validate', 'glib-gettextize', 'pycc', 'pal2rgb', 'sqlite3_analyzer', 'sphinx-apidoc', 'uic', 'rst2html5.py', 'lzma', 'xzcmp', 'route53', 'tput', 'gst-discoverer-1.0', 'ncinfo', 'gsettings', 'sip', 'pip', 'hdftopal', 'pydoc3', 'h5mkgrp', 'gio', 'xmlwf', 'pyvenv-3.7', 'bsdtar', 'ncgen', 'tiffcmp', 'icuinfo', 'gencnval', 'pandoc', 'cph', 'ipython', 'xzgrep', 'pyvenv', 'pngfix', 'qmlimportscanner', 'rst2s5.py', 'h5redeploy', 'instance_events', 'ipcluster', 'qdoc', 'qtplugininfo', 'hdfed', 'jupyter-nbconvert', 'makeconv', 'tiffmedian', 'h5debug', 'qhelpgenerator', 'conda-inspect', 'gobject-query', 'conda-build', 'volint', 'toe', 'xml2-config', 'c_rehash', 'protoc', 'pep8', 'qcollectiongenerator', 'nc-config', 'fitsinfo', 'flask', 'hb-view', 'tic', 'kvno', 'lzcat', 'gdbus-codegen', 'conda-env', 'gst-inspect-1.0', 'dbus-send', 'h5c++', 'h5repack', 'wish', 'curve_keygen', 'pytest', 'tiffset', 'xzmore', 'xz', 'pyjson5', 'unlzma', 'unzstd', 'djpeg', 'glib-mkenums', 'fetch_file', 'gunicorn', 'asadmin', 'designer', 'qdbus', 'bokeh', 'dbus-uuidgen', 'sphinx-quickstart', 'infocmp', 'icu-config', 'ipengine', 'jpegtran', 'tiff2pdf', 'rst2html4.py', 'jupyter-bundlerextension', 'gst-typefind-1.0', 'h5cc', 'genbrk', 'klist', 'samp_hub', 'jpeg2hdf', 'pyflakes', 'launch_instance', 'h5stat', 's3put', 'bzfgrep', 'fc-cat', 'h5ls', 'qdbusviewer', 'cairo-trace', 'nad2bin', 'patchelf', 'lzegrep', 'jupyter-labextension', 'rst2pseudoxml.py', 'pandoc-citeproc', 'tiff2rgba', 'pcretest', 'h5copy', 'bzdiff', 'ptrepack', 'mturk', 'lzcmp', 'glib-genmarshal', 'pygmentize', 'fixqt4headers.pl', 'lzmainfo', 'bzless', 'assistant', 'qmllint', 'lss3', 'bzip2recover', 'f2py3.7', 'qmlprofiler', 'dask-scheduler', 'lz4c', 'bsdcat', 'python', 'dynamodb_load', 'imageio_remove_bin', 'cfadmin', 'dbus-monitor', 'rst2odt_prepstyles.py', 'tabulate', 'r8tohdf', 'cwutil', 'conda-convert', 'gif2h5', 'xmllint', 'taskadmin', 'bsdcpio', 'fribidi', 'bzcat', 'rcc', 'curl', 'h5unjam', 'h4redeploy', 'isort', 'tqdm', 'tiff2ps', 'bundle_image', 'dbus-launch', 'gtester', 'anaconda', 'easy_install', 'dask-ssh', 'hdf24to8', 'fc-pattern', 'qgltf', 'pg_config', 'k5srvutil', 'hdfcomp', 'sphinx-autogen', 'anaconda-navigator', 'list_instances', 'python3-config', 'pkgdata', 'dbus-test-tool', 'hrepack', 'fax2ps', 'epylint', 'vshow', 'freetype-config', 'jupyter-migrate', 'rst2man.py', 'cq', 'infotocap', 'tclsh8.6', 'pixeltool', 'reset', 'compile_et', 'xzegrep', 'jupyter-console', 'libpng16-config', 'qmlplugindump', 'xmlpatternsvalidator', 'qwebengine_convert_dict', 'hdftor8', 'tset', 'odbcinst', 'gendict', 'gapplication', 'jupyter-kernelspec', 'pasteurize', 'isql', 'python3.7-config', 'qdbusxml2cpp', 'rst2odt.py', 'jupyter-qtconsole', 'pango-list', 'dask-submit', 'kdestroy', 'dbus-run-session', 'xml2-config.bak', 'gresource', 'bzip2', 'zstd', 'zstdmt', 'h5clear', 'h5diff', 'deactivate', '2to3-3.7', 'gdbus', 'qdbuscpp2xml', 'gst-device-monitor-1.0', 'openssl', 'rg', 'jlpm', 'xslt-config', 'bzcmp', 'unlz4', 'fc-cache', 'bunzip2', 'xmlpatterns', 'sphinx-build', 'pango-view', 'rstpep2html.py', 'gencfu', 'vmake', 'conda-skeleton', 'genrb', 'futurize', 'hdf8to24', 'fc-conflist', 'lzgrep', 'wish8.6', 'qtpaths', 'sclient', 'rdjpgcom', 'hdfls', 'spyder', 'tiffinfo', 'libtool', 'cygdb', 'sim_client', 'qlalr', 'jupyter-troubleshoot', 'h4cc', 'iusql', 'pt2to3', 'wheel', 'jupyter-nbextension', 'mysql_config', 'tabs', 'hdf2jpeg', 'glib-compile-schemas', 'fc-query', 'ncdump', 'invproj', 'conda-metapackage', 'h52gif', 'rst2html.py', 'f2py3', 'nosetests', 'skivi', 'png-fix-itxt', 'libtoolize', 'anaconda-project', 'chardetect', 'nccopy', 'glib-compile-resources', 'tiffdump', 'bzmore', 'qml', 'gtester-report', 'dynamodb_dump', 'lzless', 'h5watch', 'xmlcatalog', 'idle3', 'dbus-daemon', 'jupyter-labhub', 'odbc_config', 'nc3tonc4', 'tiffcp', 'jupyter', 'hdfimport', 'qt.conf', 'showtable', 'py.test', 'gst-stats-1.0', 'python3.7m', 'iptest', 'zstdcat', 'ktutil', 'kinit', 'dbus-cleanup-sockets', 'conda-server', 'canbusutil', 'qmlcachegen', 'lzfgrep', 'cct', 'pttree', 'python3', 'lzmore', 'numba', 'qtattributionsscanner', 'conda-develop', 'pyuic5', 'glacier', 'idle3.7', 'lrelease', 'lzmadec', 'qscxmlc', 'h5fc', 'xzless', 'jsonschema', 'lz4cat', 'hdf2gif', 'wrjpgcom', 'hdp', 'tiffsplit', 'pyrcc5', 'kswitch', 'h5jam', 'ipython3', 'conda-verify', 'qmake', 'nc4tonc3', 'kill_instance', 'moc', 'vba_extract.py', 'ptdump', 'geod', 'hb-shape', 'qtdiag', 'gst-play-1.0', 'krb5-config', 'ppm2tiff', 'pydoc3.7', 'cython', 'python3.7', 'jupyter-notebook', 'uuclient', 'keyring', 'gie', 'pcre-config', 'h5repart', 'hb-subset', 'fax2tiff', 'xzdiff', 'rst2xetex.py', 'h4_ncdump', 'fitscheck', 'pycodestyle', 'clear', 'gst-launch-1.0', 'repc', 'cjpeg', 'h5dump', 'kpasswd', 'xzcat', 'rst2xml.py', 'ipcontroller', 'lconvert', 'activate', 'h5perf_serial', 'sqlite3', 'h5format_convert', 'ksu', 'captoinfo', 'lupdate', 'hdfpack', 'lzdiff', 'dbus-update-activation-environment', 'conda-debug', 'conda-render', 'syncqt.pl', 'pybabel', 'symilar', 'bzegrep', 'pyreverse', 'paltohdf', 'fc-list', 'my_print_defaults', 'xzfgrep', 'tiffdither', 'derb', 'dltest', 'cythonize', 'proj', 'tiffcrop', 'qhelpconverter', 'pkginfo', 'raw2tiff', 'pyami_sendmail', 'fits2bitmap', 'qmltestrunner', 'jupyter-trust', 'python3.7m-config', 'pylint', 'kadmin', 'xzdec', 'isympy', 'qmlscene', 'h4_ncgen', 'rst2latex.py', 'imageio_download_bin', 'binstar', 'jupyter-lab', 'conda-index', 'conda', 'wcslint', 'libpng-config', 'tclsh', 'pylupdate5', 'linguist', 'unxz', 'pcregrep', 'slencheck', 'ncursesw6-config', 'qmleasing', 'fitsdiff', 'gio-querymodules', '2to3', 'hdiff', 'jupyter-run', 'ncgen3', 'hdfunpac', 'tiff2bw', 'hb-ot-shape-closure', 'invgeod', 'dask-worker', 'fc-match'] Warning accessing /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin gives errors: [Errno 2] No such file or directory: '/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin' ['ctest', 'cpack', 'cmake', 'ccmake'] ['cray_mpiio_example_gnuplot.sh', 'cray_mpiio_example_gnuplot_by_ranks.sh', 'cray_mpiio_example_gnuplot_multiplot.sh', 'cray_mpiio_example_gnuplot_summary.sh', 'cray_mpiio_gen_data', 'cray_mpiio_summary'] ['rca-helper', 'rca-hssconfig', 'rca_arpd', 'rca_send_booted'] ['apinit', 'apinit_rca_notify'] Warning accessing /opt/cray/alps/default/bin gives errors: [Errno 2] No such file or directory: '/opt/cray/alps/default/bin' ['jattach', 'jdetach', 'jkill', 'jsethid', 'jstat', 'jwait'] ['2.25.0.craype.ld', 'CC', 'cc', 'driver', 'ftn'] ['codecov', 'dbmerge', 'fortcom', 'fpp', 'gcore-ia', 'gdb-ia', 'icc', 'icc.cfg', 'icpc', 'icpc.cfg', 'ifort', 'ifort.cfg', 'libcilkrts.so.5', 'loopprofileviewer.csh', 'loopprofileviewer.sh', 'map_opts', 'mcpcom', 'offload_extract', 'profdcg', 'profmerge', 'profmergesampling', 'proforder', 'tselect', 'x86_64-linux.env', 'xiar', 'xiar.cfg', 'xild', 'xild.cfg'] ['check_perm.sh', 'backup.sh', 'crontab.txt', 'pyLD.py', 'ld_db.sh', 'ld', 'get_vasp_inputs.sh', 'hpss_backup.sh', 'aprun_db.sh', 'aprun.save', 'upload_db_lds.sh'] ['usgrsu', 'list-ssh-certs', 'wheres_my_job.py', 'ftp', 'prjdirs', 'tape_stats', 'stripe_large', 'hpss_target_directory_creation.py', 'getnim', 'dirquota', 'meshcoords', 'lmstat', 'fixdots2', 'take', 'find_and_kill', 'check-mpi.cce.cori', 'bbcp', 'mk_pip_cabundle.sh', 'nids_to_ranges', 'sw_support', 'stripe_medium', 'lspkg', 'fix_perms', 'gperf', 'fix_usg', 'burp', 'emptydots', 'hpss_file_sorter.script', 'check-mpi.intel.cori', 'sqs1', 'prjbdirs', 'linkinfo.sh', 'stripe_medium.backup', 'hpssquota', 'mods', 'hpss_file_sorter.py', 'o:q!', 'check-hybrid.intel.cori', 'findemptydirs', 'sshproxy.sh', 'check-mpi.gnu.cori', 'sqs.old', 'sqs', 'stripe_large.backup', 'jobstats', 'cmnquota', 'upinter', 'prjquota', 'give', 'pe_changes.py', 'prjaquota', 'sqs.new', 'check_license.sh', 'susw', 'xcmap', 'gen_nodelist.sh', 'svnlook', 'esl.sh', 'fixdots', 'home_over', 'check-hybrid.gnu.cori', 'hpss_file_sorter.py~', 'nc', 'stripe_small.backup', 'static_linking_ddt_md_th', 'swcats', 'nedit', 'check-hybrid.cce.cori', 'iris', 'stripe_small', 'dotmgr', 'hold_prjquota', 'home_usage', 'mynersc_wrappers', 'static_linking_ddt_md', 'wheres_my_job.py.bak', 'module_restore.sh', 'tape_order', 'tedi', 'ndots', 'nersc_host', 'cfsquota', 'not_used', 'run-and-watch.sh', 'generate_sorted_list_for_hpss.py', 'cmark', 'findtouch'] ['hsi', 'ftp', 'wfile', '.pftp_client_73', 'obins', '.htar.exe', '.hsi.exe', 'mkhpsstok', 'htar', 'hpss_avail', 'hsi_testcos', 'pftp'] Warning accessing /usr/common/nsg/bin gives errors: [Errno 2] No such file or directory: '/usr/common/nsg/bin' ['envldms.sh', 'ldms-csv-anonymize', 'ldms-csv-export-sos', 'ldms-l2_test.sh', 'ldms-meminfo.sh', 'ldms-pedigree', 'ldms-plugins.sh', 'ldms-py-rename.sh', 'ldms-py-subset_test.sh', 'ldms-py-syslog.sh', 'ldms-py-varset.sh', 'ldms-static-test.sh', 'ldms_ban.sh', 'ldms_local_opa2test.sh', 'ldmsd_controller', 'lmq', 'lsdate', 'ods_dump', 'sos-db', 'sos-import-csv', 'sos-monitor', 'sos-part', 'sos-schema', 'sos_cmd', 'sos_part_create', 'sos_part_delete', 'sos_part_export', 'sos_part_index', 'sos_part_modify', 'sos_part_move', 'sos_part_query'] ['.ldms-wrapper', 'json_test', 'ldms-aggd', 'ldms_ls', 'ldmsaggctl', 'ldmsctl', 'ldmsd', 'ldmsd_sos_init', 'ldmsd_stream_publish', 'ldmsd_stream_subscribe'] ['add.modules', 'mkroot', 'modulecmd'] [] ['.hmac256.hmac', '411toppm', 'BackGround', 'Backarrow2BackSpace', 'Backarrow2Delete', 'Mail', 'Signature_conversion', 'WebKitWebDriver', 'X', 'X11', 'Xdmx', 'Xephyr', 'Xnest', 'Xorg', 'Xvfb', 'Xvnc', '[', 'a4toa5', 'ac', 'aclocal', 'aclocal-1.15', 'aconnect', 'acpi_validate', 'acpibin', 'acpiexamples', 'acpiexec', 'acpihelp', 'acpinames', 'acpisrc', 'acpixtract', 'activation-client', 'addr2line', 'affixcompress', 'afs5log', 'agentxtrap', 'all_notes_off', 'allcm', 'allec', 'allneeded', 'alsaloop', 'alsamixer', 'alsatplg', 'alsaucm', 'amidi', 'amixer', 'amuFormat.sh', 'analyze', 'annotate', 'ansible', 'ansible-doc', 'ansible-galaxy', 'ansible-playbook', 'ansible-pull', 'ansible-vault', 'ant', 'antRun', 'antlr', 'antlr-config', 'anytopnm', 'aplay', 'aplaymidi', 'appdata2solv', 'applydeltaiso', 'applydeltarpm', 'apropos', 'ar', 'arch', 'arecord', 'arecordmidi', 'arpaname', 'as', 'asciitopgm', 'aseqdump', 'aseqnet', 'asn1Coding', 'asn1Decoding', 'asn1Parser', 'at', 'atktopbm', 'atq', 'atrm', 'attr', 'audit2allow', 'audit2why', 'aulast', 'aulastlog', 'ausyscall', 'autoconf', 'autoexpect', 'autoheader', 'autom4te', 'automake', 'automake-1.15', 'autopoint', 'autoreconf', 'autoscan', 'autoupdate', 'auvirt', 'avstopam', 'awk', 'b2sum', 'base32', 'base64', 'basename', 'bashbug', 'batch', 'bbox', 'bc', 'bdftogd', 'bdftruncate', 'bgp_btoa', 'bibtex', 'binhex.pl', 'bioradtopgm', 'bison', 'blkiomon', 'blkrawverify', 'bmptopnm', 'bmptoppm', 'bno_plot.py', 'bonnie', 'bonobo-activation-run-query', 'bonobo-slay', 'bootctl', 'broadwayd', 'brushtopbm', 'btrecord', 'btreplay', 'btt', 'build-classpath', 'build-classpath-directory', 'build-jar-repository', 'bunzip2', 'busctl', 'busybox', 'busybox.install', 'bwrap', 'bzcat', 'bzcmp', 'bzdiff', 'bzegrep', 'bzfgrep', 'bzgrep', 'bzip2', 'bzip2recover', 'bzless', 'bzmore', 'bznew', 'c++', 'c++filt', 'c3270', 'c_rehash', 'cal', 'call-browser', 'callgrind_annotate', 'callgrind_control', 'cameratopam', 'cancel', 'capinfos', 'captoinfo', 'captype', 'card_eventmgr', 'cardos-tool', 'cat', 'catchsegv', 'catman', 'cc', 'ccmake', 'ccmakedep', 'certtool', 'cg_annotate', 'cg_diff', 'cg_merge', 'chacl', 'chage', 'chardetect', 'chardetect-2.7', 'chardetect-3.6', 'chattr', 'chcat', 'chcon', 'check-binary-files', 'checkmodule', 'checkpolicy', 'chfn', 'chgrp', 'chkconfig', 'chkstat', 'chmem', 'chmod', 'chmorph', 'chooser', 'chown', 'chronyc', 'chroot', 'chrp-addnote', 'chrt', 'chsh', 'chvt', 'ci', 'cifscreds', 'cifsdd', 'cifsiostat', 'cistopbm', 'cksum', 'clamav-config', 'clambc', 'clamconf', 'clamdscan', 'clamdtop', 'clamscan', 'clean-binary-files', 'cleanlinks', 'clear', 'clrunimap', 'clusterdb', 'cmake', 'cmp', 'cmuwmtopbm', 'cnf', 'co', 'col', 'colcrt', 'colrm', 'column', 'combinedeltarpm', 'comm', 'command-not-found', 'compile_et', 'comps2solv', 'convmv', 'corelist', 'cp', 'cpack', 'cpan', 'cpio', 'cpp', 'cpp-7', 'cpupcstat', 'cpupower', 'cray-nvidia-acct', 'cray-nvidia-energy', 'cray-xid-logger', 'crc32', 'create-jar-links', 'createdb', 'createrepo', 'createrepo_c', 'createuser', 'crontab', 'cryptdir', 'cryptoflex-tool', 'csh', 'csplit', 'ctags', 'ctags-exuberant', 'ctest', 'cups-config', 'cupstestdsc', 'cupstestppd', 'curl', 'curl-config', 'cut', 'cvs', 'cvsbug', 'cvslock', 'cvt', 'cyrus_sasl_sample_client', 'cyrus_sasl_sample_server', 'dasher', 'date', 'db48_archive', 'db48_checkpoint', 'db48_deadlock', 'db48_dump', 'db48_hotbackup', 'db48_load', 'db48_printlog', 'db48_recover', 'db48_sql', 'db48_stat', 'db48_upgrade', 'db48_verify', 'db_archive', 'db_checkpoint', 'db_deadlock', 'db_dump', 'db_hotbackup', 'db_load', 'db_printlog', 'db_recover', 'db_sql', 'db_stat', 'db_upgrade', 'db_verify', 'dbilogstrip', 'dbiprof', 'dbiproxy', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-launch', 'dbus-launch.nox11', 'dbus-launch.x11', 'dbus-monitor', 'dbus-run-session', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dbwrap_tool', 'dc', 'dconf', 'dd', 'dd_rescue', 'ddbugtopbm', 'deallocvt', 'debinhex.pl', 'decryptdir', 'deltainfoxml2solv', 'delv', 'desktop-file-edit', 'desktop-file-install', 'desktop-file-validate', 'desktop-launch', 'devdump', 'df', 'dialog', 'diff', 'diff-jars', 'diff3', 'diffpp', 'dig', 'dir', 'dircolors', 'dirmngr', 'dirmngr-client', 'dirmngr_ldap', 'dirname', 'disable-paste', 'dislocate', 'display-buttons', 'display-coords', 'dkimsign.pl', 'dkimverify.pl', 'dltest', 'dm_date', 'dm_zdump', 'dmesg', 'dmxaddinput', 'dmxaddscreen', 'dmxinfo', 'dmxreconfig', 'dmxresize', 'dmxrminput', 'dmxrmscreen', 'dmxtodmx', 'dmxwininfo', 'dnie-tool', 'dnsdomainname', 'domainname', 'dos2unix', 'doxygen', 'dracut', 'driverless', 'dropdb', 'dropuser', 'drpmsync', 'dtrace', 'du', 'dump2psl.pl', 'dump2slvl.pl', 'dumpcap', 'dumpkeys', 'dumpsexp', 'dumpsolv', 'dvi2fax', 'dviasm', 'dvibook', 'dviconcat', 'dvidvi', 'dvigif', 'dvilualatex', 'dviluatex', 'dvipdf', 'dvipng', 'dvired', 'dviselect', 'dvisvgm', 'dvitodvi', 'dwp', 'dwz', 'easy_install', 'easy_install-2.7', 'ebrowse', 'echo', 'echo-client-2', 'ecpg', 'ed', 'edit', 'edit-xml-catalog', 'edit-xml-catalog.sh', 'editcap', 'egk-tool', 'egrep', 'egview', 'egvim', 'eidenv', 'eject', 'elfedit', 'emacs', 'emacs-gtk', 'emacs-x11', 'emacsclient', 'embedspu', 'enc2xs', 'encguess', 'encode_keychange', 'enscript', 'enscript.bin', 'env', 'envsubst', 'eog', 'eps2eps', 'epsffit', 'eqn', 'erb', 'erb.ruby2.5', 'escp2topbm', 'espeak', 'etags', 'etex', 'eu-addr2line', 'eu-ar', 'eu-elfcmp', 'eu-elfcompress', 'eu-elflint', 'eu-findtextrel', 'eu-make-debug-archive', 'eu-nm', 'eu-objdump', 'eu-ranlib', 'eu-readelf', 'eu-size', 'eu-stack', 'eu-strings', 'eu-strip', 'eu-unstrip', 'eventlogadm', 'eview', 'evim', 'evince', 'evince-previewer', 'evince-thumbnailer', 'ex', 'expand', 'expect', 'expiry', 'expr', 'extlinux', 'extractres', 'eyuvtoppm', 'f2py', 'f2py2', 'f2py2.7', 'f2py3', 'f2py3.6', 'factor', 'fallocate', 'false', 'fastjar', 'fc-cache', 'fc-cache32', 'fc-cat', 'fc-cat32', 'fc-list', 'fc-list32', 'fc-match', 'fc-match32', 'fc-pattern', 'fc-query', 'fc-scan', 'fc-validate', 'fdupes', 'fetchmail', 'fgconsole', 'fgrep', 'fiascotopnm', 'file', 'file-roller', 'filesize', 'fillup', 'fincore', 'find', 'find-jar', 'findmnt', 'findsmb', 'fips_standalone_hmac', 'fitstopnm', 'fixdlsrps', 'fixfmps', 'fixmacps', 'fixproc', 'fixpsditps', 'fixpspps', 'fixscribeps', 'fixtpps', 'fixwfwps', 'fixwpps', 'fixwwps', 'fiz', 'flask-2.7', 'flex', 'flex++', 'flock', 'fmt', 'fmtutil', 'fmtutil-sys', 'fmtutil-user', 'fold', 'foomatic-rip', 'formail', 'fragiso', 'free', 'freetype-config', 'freshclam', 'fribidi', 'fsfs-access-map', 'fstopgm', 'ftp', 'ftp-rfc', 'funzip', 'funzip-plain', 'fuser', 'fusermount', 'g++', 'g++-7', 'g-ir-annotation-tool', 'g-ir-compiler', 'g-ir-doc-tool', 'g-ir-generate', 'g-ir-inspect', 'g-ir-scanner', 'g13', 'g2r', 'gapplication', 'gawk', 'gcc', 'gcc-7', 'gcc-ar', 'gcc-ar-7', 'gcc-nm', 'gcc-nm-7', 'gcc-ranlib', 'gcc-ranlib-7', 'gccmakedep', 'gconf-editor', 'gconf-merge-tree', 'gconftool-2', 'gconftool-rebuild', 'gcore', 'gcov', 'gcov-7', 'gcov-dump', 'gcov-dump-7', 'gcov-tool', 'gcov-tool-7', 'gd2copypal', 'gd2togif', 'gd2topng', 'gdb', 'gdb-add-index', 'gdbm_dump', 'gdbm_load', 'gdbmtool', 'gdbserver', 'gdbus', 'gdbus-codegen', 'gdcmpgif', 'gdialog', 'gdk-pixbuf-csource', 'gdk-pixbuf-pixdata', 'gdk-pixbuf-query-loaders-64', 'gdm', 'gdm-screenshot', 'gdmflexiserver', 'gdparttopng', 'gdtopng', 'gedi', 'gedit', 'gem', 'gem.ruby2.5', 'gem2rpm', 'gem2rpm-0.10.1', 'gem2rpm.ruby2.5', 'gem2rpm.ruby2.5-0.10.1', 'gemtopbm', 'gemtopnm', 'genDDNSkey', 'gencat', 'gendiff', 'genscript', 'geqn', 'get-versions', 'get_kernel_version', 'getafm', 'getcifsacl', 'getconf', 'getdelays', 'getent', 'getfacl', 'getfattr', 'gethostip', 'getkeycodes', 'getopt', 'gettext', 'gettext.sh', 'gettextize', 'getunimap', 'gex', 'gids-tool', 'giftogd2', 'giftopnm', 'gio', 'gio-querymodules-64', 'git', 'git-new-workdir', 'git-receive-pack', 'git-shell', 'git-upload-archive', 'git-upload-pack', 'git_version.tcl', 'gkbd-keyboard-display', 'glib-compile-resources', 'glib-compile-schemas', 'glib-genmarshal', 'glib-gettextize', 'glib-mkenums', 'gmake', 'gnome', 'gnome-control-center', 'gnome-help', 'gnome-keyring', 'gnome-keyring-3', 'gnome-keyring-daemon', 'gnome-open', 'gnome-session', 'gnome-session-inhibit', 'gnome-session-quit', 'gnome-shell', 'gnome-shell-extension-prefs', 'gnome-terminal', 'gnome-text-editor', 'gnomesu', 'gnomevfs-cat', 'gnomevfs-copy', 'gnomevfs-df', 'gnomevfs-info', 'gnomevfs-ls', 'gnomevfs-mkdir', 'gnomevfs-monitor', 'gnomevfs-mv', 'gnomevfs-rm', 'gnuctags', 'gnuplot', 'gnutls-cli', 'gnutls-cli-debug', 'gnutls-serv', 'gobject-query', 'gouldtoppm', 'gpasswd', 'gpg', 'gpg-agent', 'gpg-connect-agent', 'gpg-error', 'gpg-error-config', 'gpg-wks-server', 'gpg-zip', 'gpg2', 'gpgconf', 'gpgme-tool', 'gpgparsemail', 'gpgrt-config', 'gpgscm', 'gpgsm', 'gpgtar', 'gpgv', 'gpgv2', 'gpm-root', 'gprof', 'grep', 'grepjar', 'gresource', 'groff', 'grog', 'grops', 'grotty', 'groups', 'gs', 'gsbj', 'gsdj', 'gsdj500', 'gsettings', 'gsettings-data-convert', 'gsftopk', 'gslj', 'gslp', 'gsnd', 'gst-device-monitor-1.0', 'gst-discoverer-1.0', 'gst-play-1.0', 'gstack', 'gtbl', 'gtester', 'gtester-report', 'gtf', 'gtk-builder-convert', 'gtk-builder-tool', 'gtk-demo', 'gtk-encode-symbolic-svg', 'gtk-launch', 'gtk-query-immodules-2.0-64', 'gtk-query-immodules-3.0-64', 'gtk-query-settings', 'gtk-update-icon-cache', 'gtk-update-icon-cache-2.0', 'gtk-update-icon-cache-3.0', 'gtk3-demo', 'gtk3-demo-application', 'gtk3-icon-browser', 'gtk3-widget-factory', 'guess_encoding', 'guild', 'guile', 'guile-tools', 'gunicorn', 'gunicorn-2.7', 'gunicorn_paster', 'gunicorn_paster-2.7', 'gunzip', 'gv', 'gv-update-userconfig', 'gvfs-cat', 'gvfs-copy', 'gvfs-info', 'gvfs-less', 'gvfs-ls', 'gvfs-mime', 'gvfs-mkdir', 'gvfs-monitor-dir', 'gvfs-monitor-file', 'gvfs-mount', 'gvfs-move', 'gvfs-open', 'gvfs-rename', 'gvfs-rm', 'gvfs-save', 'gvfs-set-attribute', 'gvfs-trash', 'gvfs-tree', 'gvi', 'gview', 'gvim', 'gvimdiff', 'gvimtutor', 'gzexe', 'gzip', 'h2ph', 'h2xs', 'hardlink', 'hattrib', 'hcd', 'hcopy', 'hdel', 'hdifftopam', 'hdir', 'hdisk.pl', 'head', 'hexdump', 'hformat', 'hipstopgm', 'hls', 'hltest', 'hmac256', 'hmkdir', 'hmount', 'host', 'hostid', 'hostname', 'hostnamectl', 'hpwd', 'hrename', 'hrmdir', 'hugeadm', 'hugectl', 'hugeedit', 'humount', 'hunspell', 'hunzip', 'hvol', 'hwloc-annotate', 'hwloc-assembler', 'hwloc-assembler-remote', 'hwloc-bind', 'hwloc-calc', 'hwloc-compress-dir', 'hwloc-diff', 'hwloc-distances', 'hwloc-distrib', 'hwloc-gather-topology', 'hwloc-info', 'hwloc-ls', 'hwloc-patch', 'hwloc-ps', 'hzip', 'i386', 'iasecc-tool', 'iasl', 'ib_atomic_bw', 'ib_atomic_lat', 'ib_read_bw', 'ib_read_lat', 'ib_send_bw', 'ib_send_lat', 'ib_write_bw', 'ib_write_lat', 'ibdiagnet', 'ibdiagpath', 'ibdmchk', 'ibdmsh', 'ibdmtr', 'ibis', 'ibnlparse', 'ibtopodiff', 'iceauth', 'icesh', 'icesh-lite', 'icewm', 'icewm-lite', 'icewm-session', 'icewm-session-lite', 'icewmbg', 'icewmbg-lite', 'icewmhint', 'icewmhint-lite', 'icontopbm', 'iconv', 'icu-config', 'id', 'ident', 'idl2wrs', 'iecset', 'ifconfig', 'ifnames', 'ilbmtoppm', 'imake', 'imgtoppm', 'includeres', 'info', 'infocmp', 'infotocap', 'infotopam', 'initdb', 'initex', 'initviocons', 'install', 'install-catalog', 'install-catalog.sh', 'install-dtd.sh', 'install-info', 'installation_sources', 'installcheck', 'instmodsh', 'ionice', 'iostat', 'iowatcher', 'ipcmk', 'ipcount', 'ipcrm', 'ipcs', 'ipf-mod.pl', 'ipmitool', 'ippfind', 'ipptool', 'iptab', 'irb', 'irb.ruby2.5', 'isodebug', 'isodump', 'isohybrid', 'isohybrid.pl', 'isoinfo', 'isolinux-config', 'isosize', 'isovfy', 'ispellaff2myspell', 'isql', 'iusql', 'jar', 'jarsigner', 'java', 'javac', 'javadoc', 'javap', 'jbigtopnm', 'jcmd', 'jconsole', 'jdb', 'jdeprscan', 'jdeps', 'jhsdb', 'jimage', 'jinfo', 'jjs', 'jlink', 'jmap', 'jmod', 'join', 'journalctl', 'jpeg2ktopam', 'jpegtopnm', 'jps', 'jq', 'jrunscript', 'jshell', 'json_pp', 'jstack', 'jstat', 'jstatd', 'kbd', 'kbd_mode', 'kbdinfo', 'kbdrate', 'kbxutil', 'kdumpid', 'kernel-install', 'keyctl', 'keygen', 'keytab-lilo', 'keytool', 'kibitz', 'kill', 'killall', 'kinit', 'klist', 'kmod', 'kmp-install', 'koi8rxterm', 'kpseaccess', 'kpsepath', 'kpsereadlink', 'kpsestat', 'kpsetool', 'kpsewhere', 'kpsewhich', 'kpsexpand', 'ksh', 'lacheck', 'last', 'lastb', 'lastcomm', 'lastlog', 'latex', 'ld', 'ld.bfd', 'ldapadd', 'ldapcompare', 'ldapdelete', 'ldapexop', 'ldapmodify', 'ldapmodrdn', 'ldappasswd', 'ldapsearch', 'ldapurl', 'ldapwhoami', 'ldd', 'leaftoppm', 'less', 'lessclose.sh', 'lessecho', 'lesskey', 'lessopen.sh', 'lex', 'lexgrog', 'lfs', 'lfs_migrate', 'lftp', 'lftp_wrapper', 'lftpget', 'libgcrypt-config', 'libnetcfg', 'libpng-config', 'libpng16-config', 'libtool', 'libtoolize', 'linc-cleanup-sockets', 'line', 'link', 'linux32', 'linux64', 'lispmtopgm', 'lksh', 'ln', 'lndir', 'lnstat', 'loadkeys', 'loadmof.sh', 'loadunimap', 'locale', 'localectl', 'localedef', 'locate', 'lockfile', 'logger', 'loginctl', 'logname', 'lognormalizer', 'look', 'lp', 'lpoptions', 'lpq', 'lpr', 'lprm', 'lprsetup.sh', 'lpstat', 'lpunlock', 'ls', 'lsar', 'lsattr', 'lsb-release', 'lsb_release', 'lsblk', 'lscpu', 'lsdev', 'lsinitrd', 'lsipc', 'lslocks', 'lslogins', 'lsmem', 'lsmod', 'lsns', 'lsof', 'lss16toppm', 'lsscsi', 'lstopo', 'lstopo-no-graphics', 'lsusb', 'lsusb.py', 'ltrace', 'lua', 'lua5.3', 'luac', 'luac5.3', 'luajittex', 'lualatex', 'luaotfload-tool', 'luatex', 'luit', 'luitx', 'lwp-download', 'lwp-dump', 'lwp-mirror', 'lwp-request', 'lz', 'lz4', 'lz4c', 'lz4cat', 'lzcat', 'lzcmp', 'lzdiff', 'lzegrep', 'lzfgrep', 'lzgrep', 'lzless', 'lzma', 'lzmadec', 'lzmainfo', 'lzmore', 'm17n-db', 'm4', 'mac2unix', 'macptopbm', 'mail', 'mailq', 'mailstat', 'mailx', 'make', 'make_method', 'makealias', 'makedeltaiso', 'makedeltarpm', 'makedepend', 'makedumpfile', 'makedumpfile-R.pl', 'makeg', 'makeindex', 'makeinfo', 'man', 'mandb', 'manpath', 'manweb', 'mapscrn', 'mariadb_config', 'mattrib', 'mbadblocks', 'mcat', 'mcd', 'mcheck', 'mclasserase', 'mcomp', 'mcookie', 'mcopy', 'md5pass', 'md5sum', 'mdatopbm', 'mdel', 'mdeltree', 'mdig', 'mdir', 'mdu', 'memdiskfind', 'memhog', 'memkind-hbw-nodes', 'merge', 'merge-pciids', 'mergecap', 'mergelib', 'mergerepo', 'mergerepo_c', 'mergesolv', 'mesg', 'mev', 'mformat', 'mgrtopbm', 'migratepages', 'migspeed', 'minfo', 'mk_cmds', 'mkafmmap', 'mkdir', 'mkdirhier', 'mkdiskimage', 'mkfifo', 'mkfontdir', 'mkfontscale', 'mkhtmlindex', 'mkhybrid', 'mkindex', 'mkinfodir', 'mkisofs', 'mkmanifest', 'mknod', 'mkocp', 'mkofm', 'mkpasswd', 'mksh', 'mksquashfs', 'mktemp', 'mktexfmt', 'mktexlsr', 'mktexmf', 'mktexpk', 'mktextfm', 'mkzftree', 'mkzimage_cmdline', 'mlabel', 'mmd', 'mmdbresolve', 'mmount', 'mmove', 'mmroff', 'modhash', 'modifyrepo', 'modifyrepo_c', 'modsign-verify', 'mof_compiler', 'mof_compiler-2.7', 'mof_compiler-3.6', 'more', 'mount', 'mountpoint', 'mouse-test', 'mpartition', 'mpi-selector', 'mpi-selector-menu', 'mpicalc', 'mpstat', 'mrd', 'mren', 'mrftopbm', 'ms_print', 'msgattrib', 'msgcat', 'msgcmp', 'msgcomm', 'msgconv', 'msgen', 'msgexec', 'msgfilter', 'msgfmt', 'msggrep', 'msginit', 'msgmerge', 'msgunfmt', 'msguniq', 'mshortname', 'mshowfat', 'mstconfig', 'mstflint', 'mstfwreset', 'mstmcra', 'mstmread', 'mstmtserver', 'mstmwrite', 'mstregdump', 'mstvpd', 'mtools', 'mtoolstest', 'mtvtoppm', 'mtype', 'multixterm', 'munch', 'munge', 'mutt', 'mutter', 'mv', 'mvxattr', 'mxtar', 'mydvichk', 'myquota', 'mysql', 'mysql_config', 'mysqladmin', 'mysqlcheck', 'mysqld_safe_helper', 'mysqldump', 'mysqlimport', 'mysqlshow', 'mzip', 'namei', 'nc', 'ncurses6-config', 'ncursesw6-config', 'neotoppm', 'neqn', 'net', 'net-server', 'net-snmp-cert', 'net-snmp-config', 'net-snmp-create-v3-user', 'netaddr-2.7', 'netcat', 'netkey-tool', 'netstat', 'newaliases', 'newgidmap', 'newgrp', 'newuidmap', 'ngettext', 'nice', 'nisdomainname', 'nl', 'nm', 'nmap', 'nmblookup', 'nmbstatus', 'nohup', 'notify-send', 'npa-tool', 'nproc', 'nroff', 'nsenter', 'nslookup', 'nstat', 'nsupdate', 'ntlm_auth', 'numactl', 'numademo', 'numastat', 'numfmt', 'nvidia-bug-report.sh', 'nvidia-cuda-mps-control', 'nvidia-cuda-mps-server', 'nvidia-debugdump', 'nvidia-persistenced', 'nvidia-settings', 'nvidia-smi', 'nvidia-xconfig', 'oLschema2ldif', 'objcopy', 'objdump', 'oci-image-tool', 'ocount', 'ocsptool', 'od', 'odbc_config', 'odbcinst', 'odd2even', 'ofl', 'oid2name', 'old', 'op-check-perfevents', 'opannotate', 'oparchive', 'openpgp-tool', 'opensc-asn1', 'opensc-explorer', 'opensc-notify', 'opensc-tool', 'openssl', 'openvt', 'operf', 'opgprof', 'ophelp', 'opimport', 'opjitconv', 'opreport', 'oprofile_map_events.pl', 'oprofile_start.sh', 'outpsfheader', 'over', 'p11-kit', 'p11tool', 'pack200', 'pagesize', 'palmtopnm', 'pamaddnoise', 'pamarith', 'pambackground', 'pambayer', 'pamchannel', 'pamcomp', 'pamcrater', 'pamcut', 'pamdeinterlace', 'pamdepth', 'pamdice', 'pamditherbw', 'pamedge', 'pamendian', 'pamenlarge', 'pamexec', 'pamfile', 'pamfix', 'pamfixtrunc', 'pamflip', 'pamfunc', 'pamgauss', 'pamgradient', 'pamlookup', 'pammasksharpen', 'pammixinterlace', 'pammosaicknit', 'pamoil', 'pampaintspill', 'pamperspective', 'pampick', 'pampop9', 'pamrecolor', 'pamrgbatopng', 'pamrubber', 'pamscale', 'pamseq', 'pamshadedrelief', 'pamsharpmap', 'pamsharpness', 'pamsistoaglyph', 'pamslice', 'pamsplit', 'pamstack', 'pamstereogram', 'pamstretch', 'pamstretch-gen', 'pamsumm', 'pamsummcol', 'pamtable', 'pamthreshold', 'pamtilt', 'pamtoavs', 'pamtodjvurle', 'pamtofits', 'pamtogif', 'pamtohdiff', 'pamtohtmltbl', 'pamtojpeg2k', 'pamtompfont', 'pamtooctaveimg', 'pamtopam', 'pamtopdbimg', 'pamtopfm', 'pamtopng', 'pamtopnm', 'pamtosrf', 'pamtosvg', 'pamtotga', 'pamtotiff', 'pamtouil', 'pamtowinicon', 'pamtoxvmini', 'pamundice', 'pamunlookup', 'pamvalidate', 'pamwipeout', 'pamx', 'parse-sgml-catalog.sh', 'passmass', 'passwd', 'paste', 'patch', 'pathchk', 'pax', 'pbmclean', 'pbmlife', 'pbmmake', 'pbmmask', 'pbmminkowski', 'pbmpage', 'pbmpscale', 'pbmreduce', 'pbmtext', 'pbmtextps', 'pbmto10x', 'pbmto4425', 'pbmtoascii', 'pbmtoatk', 'pbmtobbnbg', 'pbmtocis', 'pbmtocmuwm', 'pbmtodjvurle', 'pbmtoepsi', 'pbmtoepson', 'pbmtoescp2', 'pbmtog3', 'pbmtogem', 'pbmtogo', 'pbmtoibm23xx', 'pbmtoicon', 'pbmtolj', 'pbmtoln03', 'pbmtolps', 'pbmtomacp', 'pbmtomatrixorbital', 'pbmtomda', 'pbmtomgr', 'pbmtomrf', 'pbmtonokia', 'pbmtopgm', 'pbmtopi3', 'pbmtopk', 'pbmtoplot', 'pbmtoppa', 'pbmtopsg3', 'pbmtoptx', 'pbmtosunicon', 'pbmtowbmp', 'pbmtox10bm', 'pbmtoxbm', 'pbmtoybm', 'pbmtozinc', 'pbmupc', 'pc1toppm', 'pcre-config', 'pcre2-config', 'pcregrep', 'pcretest', 'pcxtoppm', 'pdbedit', 'pdbimgtopam', 'pdf2dsc', 'pdf2ps', 'pdfdetach', 'pdfetex', 'pdffonts', 'pdfimages', 'pdfinfo', 'pdflatex', 'pdfseparate', 'pdfsig', 'pdftex', 'pdftexi2dvi', 'pdftocairo', 'pdftohtml', 'pdftoppm', 'pdftops', 'pdftotext', 'pdfunite', 'pdksh', 'peekfd', 'perf', 'perl', 'perl5.26.1', 'perlbug', 'perldoc', 'perlivp', 'perlthanks', 'pf2afm', 'pfbtopfa', 'pfmtopam', 'pg_archivecleanup', 'pg_basebackup', 'pg_config', 'pg_controldata', 'pg_ctl', 'pg_dump', 'pg_dumpall', 'pg_isready', 'pg_receivewal', 'pg_recvlogical', 'pg_resetwal', 'pg_restore', 'pg_rewind', 'pg_standby', 'pg_test_fsync', 'pg_test_timing', 'pg_upgrade', 'pg_waldump', 'pgbench', 'pgmabel', 'pgmbentley', 'pgmcrater', 'pgmdeshadow', 'pgmedge', 'pgmenhance', 'pgmhist', 'pgmkernel', 'pgmmake', 'pgmmedian', 'pgmminkowski', 'pgmmorphconv', 'pgmnoise', 'pgmnorm', 'pgmoil', 'pgmramp', 'pgmslice', 'pgmtexture', 'pgmtofs', 'pgmtolispm', 'pgmtopbm', 'pgmtopgm', 'pgmtoppm', 'pgmtosbig', 'pgmtost4', 'pgpewrap', 'pgpring', 'pgrep', 'pi1toppm', 'pi3topbm', 'pic', 'piconv', 'pidstat', 'pigz', 'pinentry', 'pinentry-curses', 'pinentry-tty', 'ping', 'ping6', 'pinky', 'piv-tool', 'pjtoppm', 'pkaction', 'pkcheck', 'pkcs11-tool', 'pkcs11_eventmgr', 'pkcs11_inspect', 'pkcs11_listcerts', 'pkcs11_make_hash_link', 'pkcs11_setup', 'pkcs15-crypt', 'pkcs15-init', 'pkcs15-tool', 'pkexec', 'pkg-config', 'pki', 'pkill', 'pklogin_finder', 'pktopbm', 'pkttyagent', 'pl2pm', 'pmap', 'pngtogd', 'pngtogd2', 'pngtopam', 'pngtopnm', 'pnmalias', 'pnmarith', 'pnmcat', 'pnmcolormap', 'pnmcomp', 'pnmconvol', 'pnmcrop', 'pnmcut', 'pnmdepth', 'pnmenlarge', 'pnmfile', 'pnmflip', 'pnmgamma', 'pnmhisteq', 'pnmhistmap', 'pnmindex', 'pnminterp', 'pnminvert', 'pnmmargin', 'pnmmercator', 'pnmmontage', 'pnmnlfilt', 'pnmnoraw', 'pnmnorm', 'pnmpad', 'pnmpaste', 'pnmpsnr', 'pnmquant', 'pnmquantall', 'pnmremap', 'pnmrotate', 'pnmscale', 'pnmscalefixed', 'pnmshear', 'pnmsmooth', 'pnmsplit', 'pnmstitch', 'pnmtile', 'pnmtoddif', 'pnmtofiasco', 'pnmtofits', 'pnmtojbig', 'pnmtojpeg', 'pnmtopalm', 'pnmtopclxl', 'pnmtoplainpnm', 'pnmtopng', 'pnmtopnm', 'pnmtops', 'pnmtorast', 'pnmtorle', 'pnmtosgi', 'pnmtosir', 'pnmtotiff', 'pnmtotiffcmyk', 'pnmtoxwd', 'pod2html', 'pod2man', 'pod2texi', 'pod2text', 'pod2usage', 'pod_cover', 'podchecker', 'podselect', 'postgres', 'postmaster', 'pphs', 'ppm3d', 'ppmbrighten', 'ppmchange', 'ppmcie', 'ppmcolormask', 'ppmcolors', 'ppmdcfont', 'ppmddumpfont', 'ppmdim', 'ppmdist', 'ppmdither', 'ppmdmkfont', 'ppmdraw', 'ppmfade', 'ppmflash', 'ppmforge', 'ppmglobe', 'ppmhist', 'ppmlabel', 'ppmmake', 'ppmmix', 'ppmnorm', 'ppmntsc', 'ppmpat', 'ppmquant', 'ppmquantall', 'ppmrainbow', 'ppmrelief', 'ppmrough', 'ppmshadow', 'ppmshift', 'ppmspread', 'ppmtoacad', 'ppmtoapplevol', 'ppmtoarbtxt', 'ppmtoascii', 'ppmtobmp', 'ppmtoeyuv', 'ppmtogif', 'ppmtoicr', 'ppmtoilbm', 'ppmtojpeg', 'ppmtoleaf', 'ppmtolj', 'ppmtolss16', 'ppmtomap', 'ppmtomitsu', 'ppmtoneo', 'ppmtopcx', 'ppmtopgm', 'ppmtopi1', 'ppmtopict', 'ppmtopj', 'ppmtopjxl', 'ppmtoppm', 'ppmtopuzz', 'ppmtorgb3', 'ppmtosixel', 'ppmtospu', 'ppmtoterm', 'ppmtotga', 'ppmtouil', 'ppmtowinicon', 'ppmtoxpm', 'ppmtoyuv', 'ppmtoyuvsplit', 'ppmtv', 'ppmwheel', 'pr', 'pr3287', 'prctl', 'preconv', 'printafm', 'printenv', 'printf', 'prjaquota', 'prjquota', 'prlimit', 'procinfo', 'procmail', 'profiles', 'protoc', 'prove', 'prtstat', 'ps', 'ps2ascii', 'ps2eps', 'ps2epsi', 'ps2frag', 'ps2pdf', 'ps2pdf12', 'ps2pdf13', 'ps2pdf14', 'ps2pdfwr', 'ps2ps', 'ps2ps2', 'psbook', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'psidtopgm', 'psktool', 'pslatex', 'pslog', 'psmerge', 'psnup', 'psql', 'psresize', 'psselect', 'pstops', 'pstree', 'pstree.x11', 'pt-tls-client', 'ptar', 'ptardiff', 'ptargrep', 'ptked', 'ptksh', 'ptx', 'purge', 'pwd', 'pwdx', 'pxelinux-options', 'pybabel', 'pybabel-2.7', 'pydoc', 'pydoc3', 'pydoc3.6', 'python', 'python-config', 'python2', 'python2-config', 'python2.7', 'python2.7-config', 'python3', 'python3.6', 'python3.6m', 'pyvenv', 'pyvenv-3.6', 'pywbemcli', 'pywbemcli-2.7', 'pywbemcli-3.6', 'qperf', 'qrttoppm', 'quota', 'quotasync', 'rake', 'rake.ruby.ruby2.5', 'rake.ruby2.5', 'randpkt', 'ranlib', 'rasttopnm', 'raw_ethernet_burst_lat', 'raw_ethernet_bw', 'raw_ethernet_fs_rate', 'raw_ethernet_lat', 'rawshark', 'rawtopgm', 'rawtoppm', 'rbash', 'rcs', 'rcs2log', 'rcsclean', 'rcsdiff', 'rcsmerge', 'rdoc', 'rdoc.ruby.ruby2.5', 'rdoc.ruby2.5', 'rds-info', 'rds-ping', 'rds-stress', 're2c', 'readelf', 'readlink', 'realpath', 'rebuild-jar-repository', 'recode-sr-latin', 'red', 'regdiff', 'regpatch', 'regshell', 'regtree', 'reindexdb', 'remunge', 'rename', 'renice', 'reordercap', 'repo2solv', 'repo2solv.sh', 'repomdxml2solv', 'rescan-scsi-bus.sh', 'reset', 'resize', 'resizecons', 'rev', 'revpath', 'rftp', 'rgb3toppm', 'rgview', 'rgvim', 'ri', 'ri.ruby.ruby2.5', 'ri.ruby2.5', 'rlatopam', 'rletopnm', 'rlog', 'rlogin-cwd', 'rm', 'rmdir', 'rmic', 'rmid', 'rmiregistry', 'rmmof.sh', 'route', 'routef', 'routel', 'rpcclient', 'rpcgen', 'rpm', 'rpm2cpio', 'rpmbuild', 'rpmdb', 'rpmdb2solv', 'rpmgraph', 'rpmkeys', 'rpmlocate', 'rpmmd2solv', 'rpmqpack', 'rpmquery', 'rpms2solv', 'rpmsign', 'rpmspec', 'rpmverify', 'rrdcgi', 'rrdcreate', 'rrdinfo', 'rrdtool', 'rrdupdate', 'rsync', 'rsyncstats', 'ruby', 'ruby-find-versioned', 'ruby.ruby2.5', 'run_perftest_loopback', 'run_perftest_multi_devices', 'runcon', 'rview', 'rvim', 's3270', 'sa-awl', 'sa-check_spamd', 'sa-compile', 'sa-learn', 'sa-update', 'sacct', 'sacctmgr', 'sadf', 'safe-rm', 'safe-rmdir', 'salloc', 'samba-regedit', 'sandbox', 'sar', 'sattach', 'sbatch', 'sbcast', 'sbigtopgm', 'sc-hsm-tool', 'scancel', 'scdaemon', 'scons', 'scons-2.3.0', 'scons-time', 'scons-time-2.3.0', 'sconsign', 'sconsign-2.3.0', 'scontrol', 'scout', 'scp', 'screen', 'screendump', 'script', 'scriptreplay', 'scsi_logging_level', 'scsi_mandat', 'scsi_readcap', 'scsi_ready', 'scsi_satl', 'scsi_start', 'scsi_stop', 'scsi_temperature', 'sdiag', 'sdiff', 'secon', 'sed', 'sedismod', 'sedispol', 'semodule_deps', 'semodule_expand', 'semodule_link', 'semodule_package', 'semodule_unpackage', 'sensors', 'sensors-conf-convert', 'sepolgen-ifgen', 'sepolgen-ifgen-attr-helper', 'sepolicy', 'seq', 'serialver', 'sessreg', 'set_default_volume', 'setarch', 'setcifsacl', 'setfacl', 'setfattr', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setpriv', 'setserial', 'setsid', 'setterm', 'setvesablank', 'setvtrgb', 'setxkbmap', 'sfcbdump', 'sfcbinst2mof', 'sfcbmof', 'sfcbmofpp', 'sfcbproc', 'sfcbrepos', 'sfcbstage', 'sfcbtrace', 'sfcbunstage', 'sfcbuuid', 'sftp', 'sg', 'sg_bg_ctl', 'sg_compare_and_write', 'sg_copy_results', 'sg_dd', 'sg_decode_sense', 'sg_emc_trespass', 'sg_format', 'sg_get_config', 'sg_get_lba_status', 'sg_ident', 'sg_inq', 'sg_logs', 'sg_luns', 'sg_map', 'sg_map26', 'sg_modes', 'sg_opcodes', 'sg_persist', 'sg_prevent', 'sg_raw', 'sg_rbuf', 'sg_rdac', 'sg_read', 'sg_read_attr', 'sg_read_block_limits', 'sg_read_buffer', 'sg_read_long', 'sg_readcap', 'sg_reassign', 'sg_referrals', 'sg_rep_zones', 'sg_requests', 'sg_reset', 'sg_reset_wp', 'sg_rmsn', 'sg_rtpg', 'sg_safte', 'sg_sanitize', 'sg_sat_identify', 'sg_sat_phy_event', 'sg_sat_read_gplog', 'sg_sat_set_features', 'sg_scan', 'sg_seek', 'sg_senddiag', 'sg_ses', 'sg_ses_microcode', 'sg_start', 'sg_stpg', 'sg_stream_ctl', 'sg_sync', 'sg_test_rwbuf', 'sg_timestamp', 'sg_turs', 'sg_unmap', 'sg_verify', 'sg_vpd', 'sg_wr_mode', 'sg_write_buffer', 'sg_write_long', 'sg_write_same', 'sg_write_verify', 'sg_write_x', 'sg_xcopy', 'sg_zone', 'sgather', 'sginfo', 'sgitopnm', 'sgm_dd', 'sgml-register-catalog', 'sgml2xmlcat.sh', 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'spawn_console', 'spawn_login', 'spax', 'spctoppm', 'speaker-test', 'splain', 'split', 'spottopgm', 'sprio', 'sprof', 'sputoppm', 'sqlite3', 'sqlite3_analyzer', 'sqliterepo', 'sqliterepo_c', 'squeue', 'squidclient', 'sreport', 'srftopam', 'srptool', 'srun', 'ss', 'ssh', 'ssh-add', 'ssh-agent', 'ssh-copy-id', 'ssh-keygen', 'ssh-keyscan', 'sshare', 'sss_ssh_authorizedkeys', 'sss_ssh_knownhostsproxy', 'sstat', 'st4topgm', 'stap', 'stap-merge', 'stap-report', 'stapbpf', 'staprun', 'stapsh', 'star', 'startx', 'stat', 'states', 'stdbuf', 'stdlogctl', 'strace', 'strace-graph', 'strace-log-merge', 'strigger', 'strings', 'strip', 'stty', 'su', 'sum', 'sunicontopnm', 'suse-update-mime-defaults', 'susetags2solv', 'svgtopam', 'sview', 'svn', 'svn-bench', 'svn-populate-node-origins-index', 'svn_apply_autoprops.py', 'svnadmin', 'svnauthz', 'svnauthz-validate', 'svnbench', 'svndiff', 'svndumpfilter', 'svnfsfs', 'svngrep', 'svnlook', 'svnmucc', 'svnraisetreeconflict', 'svnrdump', 'svnserve', 'svnsync', 'svnversion', 'sync', 'syslinux', 'syslinux-mtools', 'syslinux2ansi', 'systemctl', 'systemd-analyze', 'systemd-ask-password', 'systemd-cat', 'systemd-cgls', 'systemd-cgtop', 'systemd-delta', 'systemd-detect-virt', 'systemd-escape', 'systemd-firstboot', 'systemd-hwdb', 'systemd-inhibit', 'systemd-machine-id-setup', 'systemd-mount', 'systemd-notify', 'systemd-path', 'systemd-run', 'systemd-socket-activate', 'systemd-stdio-bridge', 'systemd-sysusers', 'systemd-tmpfiles', 'systemd-tty-ask-password-agent', 'systemd-umount', 'systool', 'tabs', 'tac', 'tack', 'tail', 'tapestat', 'tar', 'targetcli', 'targetcli-3.6', 'targetctl', 'targetctl-3.6', 'tartest', 'taskset', 'tbl', 'tcl3270', 'tclsh', 'tclsh8.6', 'tcsh', 'tee', 'telnet', 'termprobes', 'test', 'test_igmpv3_join', 'testparm', 'testsaslauthd', 'testsolv', 'tethereal', 'tex', 'texconfig', 'texconfig-dialog', 'texconfig-sys', 'texhash', 'texi2any', 'texi2dvi', 'texi2pdf', 'texindex', 'texlinks', 'texlua', 'texluac', 'texluajit', 'texluajitc', 'text2pcap', 'tftp', 'tgatoppm', 'tgz', 'thinkjettopbm', 'thumbpdf', 'tic', 'tidy_changelog', 'tifftopnm', 'time', 'timed-read', 'timed-run', 'timedatectl', 'timeout', 'tkcon', 'tkjpeg', 'tkmib', 'tknewsbiff', 'tload', 'toe', 'top', 'touch', 'tpm_sealdata', 'tpm_unsealdata', 'tput', 'tr', 'trace', 'tracepath', 'tracepath6', 'traptoemail', 'tree', 'troff', 'true', 'truncate', 'trust', 'tset', 'tshark', 'tsort', 'tty', 'turbostat', 'tzselect', 'ucs2any', 'udevadm', 'uil', 'ul', 'ulockmgr_server', 'umoci', 'umount', 'uname', 'uname26', 'unar', 'unbuffer', 'uncompress', 'unexpand', 'unicode_start', 'unicode_stop', 'uniq', 'unix-lpr.sh', 'unix2dos', 'unix2mac', 'unlink', 'unlz4', 'unlzma', 'unmunch', 'unmunge', 'unpack200', 'unpigz', 'unrar', 'unrar_wrapper', 'unshar', 'unshare', 'unsquashfs', 'unxz', 'unzip', 'unzip-plain', 'unzipsfx', 'unzipsfx-plain', 'update-desktop-database', 'update-mime-database', 'update-xml-catalog', 'updatedb', 'updateinfoxml2solv', 'updmap', 'updmap-sys', 'updmap-user', 'uptime', 'urlgrabber', 'usb-devices', 'usbhid-dump', 'users', 'ustar', 'utmpdump', 'uudecode', 'uuencode', 'uuidgen', 'uuidparse', 'uxterm', 'uz', 'vacuumdb', 'vacuumlo', 'valgrind', 'valgrind-di-server', 'valgrind-listener', 'vdir', 'vdltodmx', 'verify_blkparse', 'vgdb', 'vi', 'view', 'vim', 'vim-nox11', 'vimdiff', 'vimtutor', 'vitmp', 'vlock', 'vmstat', 'vncconfig', 'vncpasswd', 'vncpasswd.arg', 'vncserver', 'vttest', 'vtysh', 'w', 'w3m', 'w3mman', 'wall', 'watch', 'watchgnupg', 'wayland-scanner', 'wbemai', 'wbemain', 'wbemcat', 'wbemci', 'wbemcli', 'wbemcli.py', 'wbemcli.py-2.7', 'wbemcli.py-3.6', 'wbemcm', 'wbemcmx', 'wbemdc', 'wbemdi', 'wbemec', 'wbemecn', 'wbemei', 'wbemein', 'wbemgc', 'wbemgcd', 'wbemgi', 'wbemgp', 'wbemmi', 'wbemri', 'wbemrin', 'wbemsp', 'wbinfo', 'wbmptopbm', 'wc', 'wdctl', 'webpng', 'westcos-tool', 'wget', 'whatis', 'whereis', 'which', 'who', 'whoami', 'whois', 'widget', 'winicontopam', 'winicontoppm', 'wish', 'wish8.6', 'wmidump', 'wmixtract', 'wordforms', 'wordlist2hunspell', 'write', 'x026', 'x0vncserver', 'x3270', 'x3270if', 'x86_64', 'x86_64-suse-linux-gnu-pkg-config', 'x86_energy_perf_policy', 'xargs', 'xauth', 'xbmtopbm', 'xconsole', 'xdg-desktop-icon', 'xdg-desktop-menu', 'xdg-email', 'xdg-icon-resource', 'xdg-mime', 'xdg-open', 'xdg-screensaver', 'xdg-settings', 'xdg-su', 'xdg-terminal', 'xdg_menu', 'xdg_menu_su', 'xdm', 'xdmxconfig', 'xf86debug', 'xgettext', 'xhost', 'xid_logger.sh', 'ximtoppm', 'xinit', 'xkbcomp', 'xkibitz', 'xli', 'xlito', 'xloadimage', 'xmessage', 'xmkmf', 'xml2-config', 'xml_grep', 'xml_merge', 'xml_pp', 'xml_spellcheck', 'xml_split', 'xmlcatalog', 'xmllint', 'xmltest', 'xmlwf', 'xmodmap', 'xorg-backtrace', 'xpath', 'xpmtoppm', 'xprop', 'xpstat', 'xrdb', 'xscreensaver', 'xscreensaver-command', 'xscreensaver-demo', 'xscreensaver-gl-helper', 'xset', 'xsetbg', 'xsetroot', 'xslt-config', 'xsltproc', 'xsubpp', 'xterm', 'xtermset', 'xview', 'xvminitoppm', 'xwdtopnm', 'xxd', 'xz', 'xzcat', 'xzcmp', 'xzdec', 'xzdiff', 'xzegrep', 'xzfgrep', 'xzgrep', 'xzless', 'xzmore', 'xznew', 'yacc', 'yat2m', 'ybmtopbm', 'yelp', 'yes', 'ypcat', 'ypchfn', 'ypchsh', 'ypdomainname', 'ypmatch', 'yppasswd', 'ypwhich', 'yuvsplittoppm', 'yuvtoppm', 'yuy2topam', 'yzpper', 'zcat', 'zcmp', 'zdiff', 'zegrep', 'zeisstopnm', 'zenity', 'zfgrep', 'zforce', 'zgrep', 'zip', 'zipcloak', 'zipdetails', 'zipgrep', 'zipgrep-plain', 'zipinfo', 'zipnote', 'zipsplit', 'zless', 'zmore', 'znew', 'zoo', 'zsh', 'zypp-CheckAccessDeleted', 'zypp-NameReqPrv', 'zypper'] ['arch', 'awk', 'basename', 'bash', 'blkparse', 'blktrace', 'btrace', 'cat', 'chgrp', 'chmod', 'chown', 'chvt', 'clrunimap', 'cp', 'cpio', 'csh', 'date', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-monitor', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dd', 'dd_rescue', 'deallocvt', 'df', 'dmesg', 'dnsdomainname', 'domainname', 'dumpkeys', 'echo', 'ed', 'egrep', 'ex', 'false', 'fgconsole', 'fgrep', 'fillup', 'find', 'findmnt', 'fsync', 'fuser', 'gawk', 'getkeycodes', 'getunimap', 'grep', 'guess_encoding', 'gunzip', 'gzip', 'hostname', 'ifconfig', 'initviocons', 'ip', 'kbd_mode', 'kbdinfo', 'kbdrate', 'keyctl', 'kill', 'ksh', 'lksh', 'ln', 'loadkeys', 'loadunimap', 'logger', 'login', 'ls', 'lsblk', 'lsmod', 'mail', 'mapscrn', 'md5sum', 'mkdir', 'mknod', 'mksh', 'mktemp', 'more', 'mount', 'mv', 'netstat', 'nisdomainname', 'openvt', 'outpsfheader', 'pdksh', 'pgrep', 'pidof', 'ping', 'ping6', 'pkill', 'ps', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'pwd', 'readlink', 'resizecons', 'rm', 'rmdir', 'route', 'rpm', 'screendump', 'sed', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setvesablank', 'setvtrgb', 'sh', 'showconsolefont', 'showkey', 'sleep', 'sort', 'spawn_console', 'spawn_login', 'stat', 'stty', 'su', 'sync', 'systemctl', 'systemd', 'systemd-ask-password', 'tar', 'tcsh', 'touch', 'tracepath', 'tracepath6', 'true', 'umount', 'uname', 'unicode_start', 'unicode_stop', 'usleep', 'vi', 'vim', 'ypdomainname', 'zcat', 'zsh'] ['gss-client', 'k5srvutil', 'kadmin', 'kdestroy', 'kinit', 'klist', 'kpasswd', 'krb5-config', 'ksu', 'kswitch', 'ktutil', 'kvno', 'sclient', 'sim_client', 'uuclient'] ['krb5-send-pr'] ['csmlversion', 'pe_cleanup_callback.sh', 'pe_postmount_callback.sh', 'pe_setup_callback.sh', 'set-gcc-libs', 'set_default', 'setup_shell_rcs.sh'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/doctext...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/doctext...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/doctext...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/doctext...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/doctext...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/doctext...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/doctext...not found Checking for program /opt/cray/alps/default/bin/doctext...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/doctext...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/doctext...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/doctext...not found Checking for program /global/common/cori/software/altd/2.0/bin/doctext...not found Checking for program /usr/common/software/bin/doctext...not found Checking for program /usr/common/mss/bin/doctext...not found Checking for program /usr/common/nsg/bin/doctext...not found Checking for program /opt/ovis/bin/doctext...not found Checking for program /opt/ovis/sbin/doctext...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/lib/mit/bin/doctext...not found Checking for program /usr/lib/mit/sbin/doctext...not found Checking for program /opt/cray/pe/bin/doctext...not found Checking for program /global/homes/m/madams/petsc_install/petsc/lib/petsc/bin/win32fe/doctext...not found Unable to find programs ['doctext'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['ddt-mpirun', 'forge', 'ddt', 'perf-report', 'forge-probe', 'map', 'forge-client', 'allinea-client', 'make-profiler-libraries', 'forge-mpirun', 'ddt-client'] ['qmlmin', 'iptest3', 'dask-mpi', 'sdbadmin', 'gss-client', 'cs2cs', 'ristosds', 'fc-scan', 'jupyter-kernel', 'navigator-updater', 'curl-config', 'bzgrep', 'xsltproc', 'jupyter-serverextension', 'lz4', 'runxlrd.py', 'pydoc', 'elbadmin', 'perror', 'dask-remote', 'geos-config', 'fitsheader', 'h5import', 'f2py', 'gif2hdf', 'fc-validate', 'glib-gettextize', 'pycc', 'pal2rgb', 'sqlite3_analyzer', 'sphinx-apidoc', 'uic', 'rst2html5.py', 'lzma', 'xzcmp', 'route53', 'tput', 'gst-discoverer-1.0', 'ncinfo', 'gsettings', 'sip', 'pip', 'hdftopal', 'pydoc3', 'h5mkgrp', 'gio', 'xmlwf', 'pyvenv-3.7', 'bsdtar', 'ncgen', 'tiffcmp', 'icuinfo', 'gencnval', 'pandoc', 'cph', 'ipython', 'xzgrep', 'pyvenv', 'pngfix', 'qmlimportscanner', 'rst2s5.py', 'h5redeploy', 'instance_events', 'ipcluster', 'qdoc', 'qtplugininfo', 'hdfed', 'jupyter-nbconvert', 'makeconv', 'tiffmedian', 'h5debug', 'qhelpgenerator', 'conda-inspect', 'gobject-query', 'conda-build', 'volint', 'toe', 'xml2-config', 'c_rehash', 'protoc', 'pep8', 'qcollectiongenerator', 'nc-config', 'fitsinfo', 'flask', 'hb-view', 'tic', 'kvno', 'lzcat', 'gdbus-codegen', 'conda-env', 'gst-inspect-1.0', 'dbus-send', 'h5c++', 'h5repack', 'wish', 'curve_keygen', 'pytest', 'tiffset', 'xzmore', 'xz', 'pyjson5', 'unlzma', 'unzstd', 'djpeg', 'glib-mkenums', 'fetch_file', 'gunicorn', 'asadmin', 'designer', 'qdbus', 'bokeh', 'dbus-uuidgen', 'sphinx-quickstart', 'infocmp', 'icu-config', 'ipengine', 'jpegtran', 'tiff2pdf', 'rst2html4.py', 'jupyter-bundlerextension', 'gst-typefind-1.0', 'h5cc', 'genbrk', 'klist', 'samp_hub', 'jpeg2hdf', 'pyflakes', 'launch_instance', 'h5stat', 's3put', 'bzfgrep', 'fc-cat', 'h5ls', 'qdbusviewer', 'cairo-trace', 'nad2bin', 'patchelf', 'lzegrep', 'jupyter-labextension', 'rst2pseudoxml.py', 'pandoc-citeproc', 'tiff2rgba', 'pcretest', 'h5copy', 'bzdiff', 'ptrepack', 'mturk', 'lzcmp', 'glib-genmarshal', 'pygmentize', 'fixqt4headers.pl', 'lzmainfo', 'bzless', 'assistant', 'qmllint', 'lss3', 'bzip2recover', 'f2py3.7', 'qmlprofiler', 'dask-scheduler', 'lz4c', 'bsdcat', 'python', 'dynamodb_load', 'imageio_remove_bin', 'cfadmin', 'dbus-monitor', 'rst2odt_prepstyles.py', 'tabulate', 'r8tohdf', 'cwutil', 'conda-convert', 'gif2h5', 'xmllint', 'taskadmin', 'bsdcpio', 'fribidi', 'bzcat', 'rcc', 'curl', 'h5unjam', 'h4redeploy', 'isort', 'tqdm', 'tiff2ps', 'bundle_image', 'dbus-launch', 'gtester', 'anaconda', 'easy_install', 'dask-ssh', 'hdf24to8', 'fc-pattern', 'qgltf', 'pg_config', 'k5srvutil', 'hdfcomp', 'sphinx-autogen', 'anaconda-navigator', 'list_instances', 'python3-config', 'pkgdata', 'dbus-test-tool', 'hrepack', 'fax2ps', 'epylint', 'vshow', 'freetype-config', 'jupyter-migrate', 'rst2man.py', 'cq', 'infotocap', 'tclsh8.6', 'pixeltool', 'reset', 'compile_et', 'xzegrep', 'jupyter-console', 'libpng16-config', 'qmlplugindump', 'xmlpatternsvalidator', 'qwebengine_convert_dict', 'hdftor8', 'tset', 'odbcinst', 'gendict', 'gapplication', 'jupyter-kernelspec', 'pasteurize', 'isql', 'python3.7-config', 'qdbusxml2cpp', 'rst2odt.py', 'jupyter-qtconsole', 'pango-list', 'dask-submit', 'kdestroy', 'dbus-run-session', 'xml2-config.bak', 'gresource', 'bzip2', 'zstd', 'zstdmt', 'h5clear', 'h5diff', 'deactivate', '2to3-3.7', 'gdbus', 'qdbuscpp2xml', 'gst-device-monitor-1.0', 'openssl', 'rg', 'jlpm', 'xslt-config', 'bzcmp', 'unlz4', 'fc-cache', 'bunzip2', 'xmlpatterns', 'sphinx-build', 'pango-view', 'rstpep2html.py', 'gencfu', 'vmake', 'conda-skeleton', 'genrb', 'futurize', 'hdf8to24', 'fc-conflist', 'lzgrep', 'wish8.6', 'qtpaths', 'sclient', 'rdjpgcom', 'hdfls', 'spyder', 'tiffinfo', 'libtool', 'cygdb', 'sim_client', 'qlalr', 'jupyter-troubleshoot', 'h4cc', 'iusql', 'pt2to3', 'wheel', 'jupyter-nbextension', 'mysql_config', 'tabs', 'hdf2jpeg', 'glib-compile-schemas', 'fc-query', 'ncdump', 'invproj', 'conda-metapackage', 'h52gif', 'rst2html.py', 'f2py3', 'nosetests', 'skivi', 'png-fix-itxt', 'libtoolize', 'anaconda-project', 'chardetect', 'nccopy', 'glib-compile-resources', 'tiffdump', 'bzmore', 'qml', 'gtester-report', 'dynamodb_dump', 'lzless', 'h5watch', 'xmlcatalog', 'idle3', 'dbus-daemon', 'jupyter-labhub', 'odbc_config', 'nc3tonc4', 'tiffcp', 'jupyter', 'hdfimport', 'qt.conf', 'showtable', 'py.test', 'gst-stats-1.0', 'python3.7m', 'iptest', 'zstdcat', 'ktutil', 'kinit', 'dbus-cleanup-sockets', 'conda-server', 'canbusutil', 'qmlcachegen', 'lzfgrep', 'cct', 'pttree', 'python3', 'lzmore', 'numba', 'qtattributionsscanner', 'conda-develop', 'pyuic5', 'glacier', 'idle3.7', 'lrelease', 'lzmadec', 'qscxmlc', 'h5fc', 'xzless', 'jsonschema', 'lz4cat', 'hdf2gif', 'wrjpgcom', 'hdp', 'tiffsplit', 'pyrcc5', 'kswitch', 'h5jam', 'ipython3', 'conda-verify', 'qmake', 'nc4tonc3', 'kill_instance', 'moc', 'vba_extract.py', 'ptdump', 'geod', 'hb-shape', 'qtdiag', 'gst-play-1.0', 'krb5-config', 'ppm2tiff', 'pydoc3.7', 'cython', 'python3.7', 'jupyter-notebook', 'uuclient', 'keyring', 'gie', 'pcre-config', 'h5repart', 'hb-subset', 'fax2tiff', 'xzdiff', 'rst2xetex.py', 'h4_ncdump', 'fitscheck', 'pycodestyle', 'clear', 'gst-launch-1.0', 'repc', 'cjpeg', 'h5dump', 'kpasswd', 'xzcat', 'rst2xml.py', 'ipcontroller', 'lconvert', 'activate', 'h5perf_serial', 'sqlite3', 'h5format_convert', 'ksu', 'captoinfo', 'lupdate', 'hdfpack', 'lzdiff', 'dbus-update-activation-environment', 'conda-debug', 'conda-render', 'syncqt.pl', 'pybabel', 'symilar', 'bzegrep', 'pyreverse', 'paltohdf', 'fc-list', 'my_print_defaults', 'xzfgrep', 'tiffdither', 'derb', 'dltest', 'cythonize', 'proj', 'tiffcrop', 'qhelpconverter', 'pkginfo', 'raw2tiff', 'pyami_sendmail', 'fits2bitmap', 'qmltestrunner', 'jupyter-trust', 'python3.7m-config', 'pylint', 'kadmin', 'xzdec', 'isympy', 'qmlscene', 'h4_ncgen', 'rst2latex.py', 'imageio_download_bin', 'binstar', 'jupyter-lab', 'conda-index', 'conda', 'wcslint', 'libpng-config', 'tclsh', 'pylupdate5', 'linguist', 'unxz', 'pcregrep', 'slencheck', 'ncursesw6-config', 'qmleasing', 'fitsdiff', 'gio-querymodules', '2to3', 'hdiff', 'jupyter-run', 'ncgen3', 'hdfunpac', 'tiff2bw', 'hb-ot-shape-closure', 'invgeod', 'dask-worker', 'fc-match'] Warning accessing /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin gives errors: [Errno 2] No such file or directory: '/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin' ['ctest', 'cpack', 'cmake', 'ccmake'] ['cray_mpiio_example_gnuplot.sh', 'cray_mpiio_example_gnuplot_by_ranks.sh', 'cray_mpiio_example_gnuplot_multiplot.sh', 'cray_mpiio_example_gnuplot_summary.sh', 'cray_mpiio_gen_data', 'cray_mpiio_summary'] ['rca-helper', 'rca-hssconfig', 'rca_arpd', 'rca_send_booted'] ['apinit', 'apinit_rca_notify'] Warning accessing /opt/cray/alps/default/bin gives errors: [Errno 2] No such file or directory: '/opt/cray/alps/default/bin' ['jattach', 'jdetach', 'jkill', 'jsethid', 'jstat', 'jwait'] ['2.25.0.craype.ld', 'CC', 'cc', 'driver', 'ftn'] ['codecov', 'dbmerge', 'fortcom', 'fpp', 'gcore-ia', 'gdb-ia', 'icc', 'icc.cfg', 'icpc', 'icpc.cfg', 'ifort', 'ifort.cfg', 'libcilkrts.so.5', 'loopprofileviewer.csh', 'loopprofileviewer.sh', 'map_opts', 'mcpcom', 'offload_extract', 'profdcg', 'profmerge', 'profmergesampling', 'proforder', 'tselect', 'x86_64-linux.env', 'xiar', 'xiar.cfg', 'xild', 'xild.cfg'] ['check_perm.sh', 'backup.sh', 'crontab.txt', 'pyLD.py', 'ld_db.sh', 'ld', 'get_vasp_inputs.sh', 'hpss_backup.sh', 'aprun_db.sh', 'aprun.save', 'upload_db_lds.sh'] ['usgrsu', 'list-ssh-certs', 'wheres_my_job.py', 'ftp', 'prjdirs', 'tape_stats', 'stripe_large', 'hpss_target_directory_creation.py', 'getnim', 'dirquota', 'meshcoords', 'lmstat', 'fixdots2', 'take', 'find_and_kill', 'check-mpi.cce.cori', 'bbcp', 'mk_pip_cabundle.sh', 'nids_to_ranges', 'sw_support', 'stripe_medium', 'lspkg', 'fix_perms', 'gperf', 'fix_usg', 'burp', 'emptydots', 'hpss_file_sorter.script', 'check-mpi.intel.cori', 'sqs1', 'prjbdirs', 'linkinfo.sh', 'stripe_medium.backup', 'hpssquota', 'mods', 'hpss_file_sorter.py', 'o:q!', 'check-hybrid.intel.cori', 'findemptydirs', 'sshproxy.sh', 'check-mpi.gnu.cori', 'sqs.old', 'sqs', 'stripe_large.backup', 'jobstats', 'cmnquota', 'upinter', 'prjquota', 'give', 'pe_changes.py', 'prjaquota', 'sqs.new', 'check_license.sh', 'susw', 'xcmap', 'gen_nodelist.sh', 'svnlook', 'esl.sh', 'fixdots', 'home_over', 'check-hybrid.gnu.cori', 'hpss_file_sorter.py~', 'nc', 'stripe_small.backup', 'static_linking_ddt_md_th', 'swcats', 'nedit', 'check-hybrid.cce.cori', 'iris', 'stripe_small', 'dotmgr', 'hold_prjquota', 'home_usage', 'mynersc_wrappers', 'static_linking_ddt_md', 'wheres_my_job.py.bak', 'module_restore.sh', 'tape_order', 'tedi', 'ndots', 'nersc_host', 'cfsquota', 'not_used', 'run-and-watch.sh', 'generate_sorted_list_for_hpss.py', 'cmark', 'findtouch'] ['hsi', 'ftp', 'wfile', '.pftp_client_73', 'obins', '.htar.exe', '.hsi.exe', 'mkhpsstok', 'htar', 'hpss_avail', 'hsi_testcos', 'pftp'] Warning accessing /usr/common/nsg/bin gives errors: [Errno 2] No such file or directory: '/usr/common/nsg/bin' ['envldms.sh', 'ldms-csv-anonymize', 'ldms-csv-export-sos', 'ldms-l2_test.sh', 'ldms-meminfo.sh', 'ldms-pedigree', 'ldms-plugins.sh', 'ldms-py-rename.sh', 'ldms-py-subset_test.sh', 'ldms-py-syslog.sh', 'ldms-py-varset.sh', 'ldms-static-test.sh', 'ldms_ban.sh', 'ldms_local_opa2test.sh', 'ldmsd_controller', 'lmq', 'lsdate', 'ods_dump', 'sos-db', 'sos-import-csv', 'sos-monitor', 'sos-part', 'sos-schema', 'sos_cmd', 'sos_part_create', 'sos_part_delete', 'sos_part_export', 'sos_part_index', 'sos_part_modify', 'sos_part_move', 'sos_part_query'] ['.ldms-wrapper', 'json_test', 'ldms-aggd', 'ldms_ls', 'ldmsaggctl', 'ldmsctl', 'ldmsd', 'ldmsd_sos_init', 'ldmsd_stream_publish', 'ldmsd_stream_subscribe'] ['add.modules', 'mkroot', 'modulecmd'] [] ['.hmac256.hmac', '411toppm', 'BackGround', 'Backarrow2BackSpace', 'Backarrow2Delete', 'Mail', 'Signature_conversion', 'WebKitWebDriver', 'X', 'X11', 'Xdmx', 'Xephyr', 'Xnest', 'Xorg', 'Xvfb', 'Xvnc', '[', 'a4toa5', 'ac', 'aclocal', 'aclocal-1.15', 'aconnect', 'acpi_validate', 'acpibin', 'acpiexamples', 'acpiexec', 'acpihelp', 'acpinames', 'acpisrc', 'acpixtract', 'activation-client', 'addr2line', 'affixcompress', 'afs5log', 'agentxtrap', 'all_notes_off', 'allcm', 'allec', 'allneeded', 'alsaloop', 'alsamixer', 'alsatplg', 'alsaucm', 'amidi', 'amixer', 'amuFormat.sh', 'analyze', 'annotate', 'ansible', 'ansible-doc', 'ansible-galaxy', 'ansible-playbook', 'ansible-pull', 'ansible-vault', 'ant', 'antRun', 'antlr', 'antlr-config', 'anytopnm', 'aplay', 'aplaymidi', 'appdata2solv', 'applydeltaiso', 'applydeltarpm', 'apropos', 'ar', 'arch', 'arecord', 'arecordmidi', 'arpaname', 'as', 'asciitopgm', 'aseqdump', 'aseqnet', 'asn1Coding', 'asn1Decoding', 'asn1Parser', 'at', 'atktopbm', 'atq', 'atrm', 'attr', 'audit2allow', 'audit2why', 'aulast', 'aulastlog', 'ausyscall', 'autoconf', 'autoexpect', 'autoheader', 'autom4te', 'automake', 'automake-1.15', 'autopoint', 'autoreconf', 'autoscan', 'autoupdate', 'auvirt', 'avstopam', 'awk', 'b2sum', 'base32', 'base64', 'basename', 'bashbug', 'batch', 'bbox', 'bc', 'bdftogd', 'bdftruncate', 'bgp_btoa', 'bibtex', 'binhex.pl', 'bioradtopgm', 'bison', 'blkiomon', 'blkrawverify', 'bmptopnm', 'bmptoppm', 'bno_plot.py', 'bonnie', 'bonobo-activation-run-query', 'bonobo-slay', 'bootctl', 'broadwayd', 'brushtopbm', 'btrecord', 'btreplay', 'btt', 'build-classpath', 'build-classpath-directory', 'build-jar-repository', 'bunzip2', 'busctl', 'busybox', 'busybox.install', 'bwrap', 'bzcat', 'bzcmp', 'bzdiff', 'bzegrep', 'bzfgrep', 'bzgrep', 'bzip2', 'bzip2recover', 'bzless', 'bzmore', 'bznew', 'c++', 'c++filt', 'c3270', 'c_rehash', 'cal', 'call-browser', 'callgrind_annotate', 'callgrind_control', 'cameratopam', 'cancel', 'capinfos', 'captoinfo', 'captype', 'card_eventmgr', 'cardos-tool', 'cat', 'catchsegv', 'catman', 'cc', 'ccmake', 'ccmakedep', 'certtool', 'cg_annotate', 'cg_diff', 'cg_merge', 'chacl', 'chage', 'chardetect', 'chardetect-2.7', 'chardetect-3.6', 'chattr', 'chcat', 'chcon', 'check-binary-files', 'checkmodule', 'checkpolicy', 'chfn', 'chgrp', 'chkconfig', 'chkstat', 'chmem', 'chmod', 'chmorph', 'chooser', 'chown', 'chronyc', 'chroot', 'chrp-addnote', 'chrt', 'chsh', 'chvt', 'ci', 'cifscreds', 'cifsdd', 'cifsiostat', 'cistopbm', 'cksum', 'clamav-config', 'clambc', 'clamconf', 'clamdscan', 'clamdtop', 'clamscan', 'clean-binary-files', 'cleanlinks', 'clear', 'clrunimap', 'clusterdb', 'cmake', 'cmp', 'cmuwmtopbm', 'cnf', 'co', 'col', 'colcrt', 'colrm', 'column', 'combinedeltarpm', 'comm', 'command-not-found', 'compile_et', 'comps2solv', 'convmv', 'corelist', 'cp', 'cpack', 'cpan', 'cpio', 'cpp', 'cpp-7', 'cpupcstat', 'cpupower', 'cray-nvidia-acct', 'cray-nvidia-energy', 'cray-xid-logger', 'crc32', 'create-jar-links', 'createdb', 'createrepo', 'createrepo_c', 'createuser', 'crontab', 'cryptdir', 'cryptoflex-tool', 'csh', 'csplit', 'ctags', 'ctags-exuberant', 'ctest', 'cups-config', 'cupstestdsc', 'cupstestppd', 'curl', 'curl-config', 'cut', 'cvs', 'cvsbug', 'cvslock', 'cvt', 'cyrus_sasl_sample_client', 'cyrus_sasl_sample_server', 'dasher', 'date', 'db48_archive', 'db48_checkpoint', 'db48_deadlock', 'db48_dump', 'db48_hotbackup', 'db48_load', 'db48_printlog', 'db48_recover', 'db48_sql', 'db48_stat', 'db48_upgrade', 'db48_verify', 'db_archive', 'db_checkpoint', 'db_deadlock', 'db_dump', 'db_hotbackup', 'db_load', 'db_printlog', 'db_recover', 'db_sql', 'db_stat', 'db_upgrade', 'db_verify', 'dbilogstrip', 'dbiprof', 'dbiproxy', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-launch', 'dbus-launch.nox11', 'dbus-launch.x11', 'dbus-monitor', 'dbus-run-session', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dbwrap_tool', 'dc', 'dconf', 'dd', 'dd_rescue', 'ddbugtopbm', 'deallocvt', 'debinhex.pl', 'decryptdir', 'deltainfoxml2solv', 'delv', 'desktop-file-edit', 'desktop-file-install', 'desktop-file-validate', 'desktop-launch', 'devdump', 'df', 'dialog', 'diff', 'diff-jars', 'diff3', 'diffpp', 'dig', 'dir', 'dircolors', 'dirmngr', 'dirmngr-client', 'dirmngr_ldap', 'dirname', 'disable-paste', 'dislocate', 'display-buttons', 'display-coords', 'dkimsign.pl', 'dkimverify.pl', 'dltest', 'dm_date', 'dm_zdump', 'dmesg', 'dmxaddinput', 'dmxaddscreen', 'dmxinfo', 'dmxreconfig', 'dmxresize', 'dmxrminput', 'dmxrmscreen', 'dmxtodmx', 'dmxwininfo', 'dnie-tool', 'dnsdomainname', 'domainname', 'dos2unix', 'doxygen', 'dracut', 'driverless', 'dropdb', 'dropuser', 'drpmsync', 'dtrace', 'du', 'dump2psl.pl', 'dump2slvl.pl', 'dumpcap', 'dumpkeys', 'dumpsexp', 'dumpsolv', 'dvi2fax', 'dviasm', 'dvibook', 'dviconcat', 'dvidvi', 'dvigif', 'dvilualatex', 'dviluatex', 'dvipdf', 'dvipng', 'dvired', 'dviselect', 'dvisvgm', 'dvitodvi', 'dwp', 'dwz', 'easy_install', 'easy_install-2.7', 'ebrowse', 'echo', 'echo-client-2', 'ecpg', 'ed', 'edit', 'edit-xml-catalog', 'edit-xml-catalog.sh', 'editcap', 'egk-tool', 'egrep', 'egview', 'egvim', 'eidenv', 'eject', 'elfedit', 'emacs', 'emacs-gtk', 'emacs-x11', 'emacsclient', 'embedspu', 'enc2xs', 'encguess', 'encode_keychange', 'enscript', 'enscript.bin', 'env', 'envsubst', 'eog', 'eps2eps', 'epsffit', 'eqn', 'erb', 'erb.ruby2.5', 'escp2topbm', 'espeak', 'etags', 'etex', 'eu-addr2line', 'eu-ar', 'eu-elfcmp', 'eu-elfcompress', 'eu-elflint', 'eu-findtextrel', 'eu-make-debug-archive', 'eu-nm', 'eu-objdump', 'eu-ranlib', 'eu-readelf', 'eu-size', 'eu-stack', 'eu-strings', 'eu-strip', 'eu-unstrip', 'eventlogadm', 'eview', 'evim', 'evince', 'evince-previewer', 'evince-thumbnailer', 'ex', 'expand', 'expect', 'expiry', 'expr', 'extlinux', 'extractres', 'eyuvtoppm', 'f2py', 'f2py2', 'f2py2.7', 'f2py3', 'f2py3.6', 'factor', 'fallocate', 'false', 'fastjar', 'fc-cache', 'fc-cache32', 'fc-cat', 'fc-cat32', 'fc-list', 'fc-list32', 'fc-match', 'fc-match32', 'fc-pattern', 'fc-query', 'fc-scan', 'fc-validate', 'fdupes', 'fetchmail', 'fgconsole', 'fgrep', 'fiascotopnm', 'file', 'file-roller', 'filesize', 'fillup', 'fincore', 'find', 'find-jar', 'findmnt', 'findsmb', 'fips_standalone_hmac', 'fitstopnm', 'fixdlsrps', 'fixfmps', 'fixmacps', 'fixproc', 'fixpsditps', 'fixpspps', 'fixscribeps', 'fixtpps', 'fixwfwps', 'fixwpps', 'fixwwps', 'fiz', 'flask-2.7', 'flex', 'flex++', 'flock', 'fmt', 'fmtutil', 'fmtutil-sys', 'fmtutil-user', 'fold', 'foomatic-rip', 'formail', 'fragiso', 'free', 'freetype-config', 'freshclam', 'fribidi', 'fsfs-access-map', 'fstopgm', 'ftp', 'ftp-rfc', 'funzip', 'funzip-plain', 'fuser', 'fusermount', 'g++', 'g++-7', 'g-ir-annotation-tool', 'g-ir-compiler', 'g-ir-doc-tool', 'g-ir-generate', 'g-ir-inspect', 'g-ir-scanner', 'g13', 'g2r', 'gapplication', 'gawk', 'gcc', 'gcc-7', 'gcc-ar', 'gcc-ar-7', 'gcc-nm', 'gcc-nm-7', 'gcc-ranlib', 'gcc-ranlib-7', 'gccmakedep', 'gconf-editor', 'gconf-merge-tree', 'gconftool-2', 'gconftool-rebuild', 'gcore', 'gcov', 'gcov-7', 'gcov-dump', 'gcov-dump-7', 'gcov-tool', 'gcov-tool-7', 'gd2copypal', 'gd2togif', 'gd2topng', 'gdb', 'gdb-add-index', 'gdbm_dump', 'gdbm_load', 'gdbmtool', 'gdbserver', 'gdbus', 'gdbus-codegen', 'gdcmpgif', 'gdialog', 'gdk-pixbuf-csource', 'gdk-pixbuf-pixdata', 'gdk-pixbuf-query-loaders-64', 'gdm', 'gdm-screenshot', 'gdmflexiserver', 'gdparttopng', 'gdtopng', 'gedi', 'gedit', 'gem', 'gem.ruby2.5', 'gem2rpm', 'gem2rpm-0.10.1', 'gem2rpm.ruby2.5', 'gem2rpm.ruby2.5-0.10.1', 'gemtopbm', 'gemtopnm', 'genDDNSkey', 'gencat', 'gendiff', 'genscript', 'geqn', 'get-versions', 'get_kernel_version', 'getafm', 'getcifsacl', 'getconf', 'getdelays', 'getent', 'getfacl', 'getfattr', 'gethostip', 'getkeycodes', 'getopt', 'gettext', 'gettext.sh', 'gettextize', 'getunimap', 'gex', 'gids-tool', 'giftogd2', 'giftopnm', 'gio', 'gio-querymodules-64', 'git', 'git-new-workdir', 'git-receive-pack', 'git-shell', 'git-upload-archive', 'git-upload-pack', 'git_version.tcl', 'gkbd-keyboard-display', 'glib-compile-resources', 'glib-compile-schemas', 'glib-genmarshal', 'glib-gettextize', 'glib-mkenums', 'gmake', 'gnome', 'gnome-control-center', 'gnome-help', 'gnome-keyring', 'gnome-keyring-3', 'gnome-keyring-daemon', 'gnome-open', 'gnome-session', 'gnome-session-inhibit', 'gnome-session-quit', 'gnome-shell', 'gnome-shell-extension-prefs', 'gnome-terminal', 'gnome-text-editor', 'gnomesu', 'gnomevfs-cat', 'gnomevfs-copy', 'gnomevfs-df', 'gnomevfs-info', 'gnomevfs-ls', 'gnomevfs-mkdir', 'gnomevfs-monitor', 'gnomevfs-mv', 'gnomevfs-rm', 'gnuctags', 'gnuplot', 'gnutls-cli', 'gnutls-cli-debug', 'gnutls-serv', 'gobject-query', 'gouldtoppm', 'gpasswd', 'gpg', 'gpg-agent', 'gpg-connect-agent', 'gpg-error', 'gpg-error-config', 'gpg-wks-server', 'gpg-zip', 'gpg2', 'gpgconf', 'gpgme-tool', 'gpgparsemail', 'gpgrt-config', 'gpgscm', 'gpgsm', 'gpgtar', 'gpgv', 'gpgv2', 'gpm-root', 'gprof', 'grep', 'grepjar', 'gresource', 'groff', 'grog', 'grops', 'grotty', 'groups', 'gs', 'gsbj', 'gsdj', 'gsdj500', 'gsettings', 'gsettings-data-convert', 'gsftopk', 'gslj', 'gslp', 'gsnd', 'gst-device-monitor-1.0', 'gst-discoverer-1.0', 'gst-play-1.0', 'gstack', 'gtbl', 'gtester', 'gtester-report', 'gtf', 'gtk-builder-convert', 'gtk-builder-tool', 'gtk-demo', 'gtk-encode-symbolic-svg', 'gtk-launch', 'gtk-query-immodules-2.0-64', 'gtk-query-immodules-3.0-64', 'gtk-query-settings', 'gtk-update-icon-cache', 'gtk-update-icon-cache-2.0', 'gtk-update-icon-cache-3.0', 'gtk3-demo', 'gtk3-demo-application', 'gtk3-icon-browser', 'gtk3-widget-factory', 'guess_encoding', 'guild', 'guile', 'guile-tools', 'gunicorn', 'gunicorn-2.7', 'gunicorn_paster', 'gunicorn_paster-2.7', 'gunzip', 'gv', 'gv-update-userconfig', 'gvfs-cat', 'gvfs-copy', 'gvfs-info', 'gvfs-less', 'gvfs-ls', 'gvfs-mime', 'gvfs-mkdir', 'gvfs-monitor-dir', 'gvfs-monitor-file', 'gvfs-mount', 'gvfs-move', 'gvfs-open', 'gvfs-rename', 'gvfs-rm', 'gvfs-save', 'gvfs-set-attribute', 'gvfs-trash', 'gvfs-tree', 'gvi', 'gview', 'gvim', 'gvimdiff', 'gvimtutor', 'gzexe', 'gzip', 'h2ph', 'h2xs', 'hardlink', 'hattrib', 'hcd', 'hcopy', 'hdel', 'hdifftopam', 'hdir', 'hdisk.pl', 'head', 'hexdump', 'hformat', 'hipstopgm', 'hls', 'hltest', 'hmac256', 'hmkdir', 'hmount', 'host', 'hostid', 'hostname', 'hostnamectl', 'hpwd', 'hrename', 'hrmdir', 'hugeadm', 'hugectl', 'hugeedit', 'humount', 'hunspell', 'hunzip', 'hvol', 'hwloc-annotate', 'hwloc-assembler', 'hwloc-assembler-remote', 'hwloc-bind', 'hwloc-calc', 'hwloc-compress-dir', 'hwloc-diff', 'hwloc-distances', 'hwloc-distrib', 'hwloc-gather-topology', 'hwloc-info', 'hwloc-ls', 'hwloc-patch', 'hwloc-ps', 'hzip', 'i386', 'iasecc-tool', 'iasl', 'ib_atomic_bw', 'ib_atomic_lat', 'ib_read_bw', 'ib_read_lat', 'ib_send_bw', 'ib_send_lat', 'ib_write_bw', 'ib_write_lat', 'ibdiagnet', 'ibdiagpath', 'ibdmchk', 'ibdmsh', 'ibdmtr', 'ibis', 'ibnlparse', 'ibtopodiff', 'iceauth', 'icesh', 'icesh-lite', 'icewm', 'icewm-lite', 'icewm-session', 'icewm-session-lite', 'icewmbg', 'icewmbg-lite', 'icewmhint', 'icewmhint-lite', 'icontopbm', 'iconv', 'icu-config', 'id', 'ident', 'idl2wrs', 'iecset', 'ifconfig', 'ifnames', 'ilbmtoppm', 'imake', 'imgtoppm', 'includeres', 'info', 'infocmp', 'infotocap', 'infotopam', 'initdb', 'initex', 'initviocons', 'install', 'install-catalog', 'install-catalog.sh', 'install-dtd.sh', 'install-info', 'installation_sources', 'installcheck', 'instmodsh', 'ionice', 'iostat', 'iowatcher', 'ipcmk', 'ipcount', 'ipcrm', 'ipcs', 'ipf-mod.pl', 'ipmitool', 'ippfind', 'ipptool', 'iptab', 'irb', 'irb.ruby2.5', 'isodebug', 'isodump', 'isohybrid', 'isohybrid.pl', 'isoinfo', 'isolinux-config', 'isosize', 'isovfy', 'ispellaff2myspell', 'isql', 'iusql', 'jar', 'jarsigner', 'java', 'javac', 'javadoc', 'javap', 'jbigtopnm', 'jcmd', 'jconsole', 'jdb', 'jdeprscan', 'jdeps', 'jhsdb', 'jimage', 'jinfo', 'jjs', 'jlink', 'jmap', 'jmod', 'join', 'journalctl', 'jpeg2ktopam', 'jpegtopnm', 'jps', 'jq', 'jrunscript', 'jshell', 'json_pp', 'jstack', 'jstat', 'jstatd', 'kbd', 'kbd_mode', 'kbdinfo', 'kbdrate', 'kbxutil', 'kdumpid', 'kernel-install', 'keyctl', 'keygen', 'keytab-lilo', 'keytool', 'kibitz', 'kill', 'killall', 'kinit', 'klist', 'kmod', 'kmp-install', 'koi8rxterm', 'kpseaccess', 'kpsepath', 'kpsereadlink', 'kpsestat', 'kpsetool', 'kpsewhere', 'kpsewhich', 'kpsexpand', 'ksh', 'lacheck', 'last', 'lastb', 'lastcomm', 'lastlog', 'latex', 'ld', 'ld.bfd', 'ldapadd', 'ldapcompare', 'ldapdelete', 'ldapexop', 'ldapmodify', 'ldapmodrdn', 'ldappasswd', 'ldapsearch', 'ldapurl', 'ldapwhoami', 'ldd', 'leaftoppm', 'less', 'lessclose.sh', 'lessecho', 'lesskey', 'lessopen.sh', 'lex', 'lexgrog', 'lfs', 'lfs_migrate', 'lftp', 'lftp_wrapper', 'lftpget', 'libgcrypt-config', 'libnetcfg', 'libpng-config', 'libpng16-config', 'libtool', 'libtoolize', 'linc-cleanup-sockets', 'line', 'link', 'linux32', 'linux64', 'lispmtopgm', 'lksh', 'ln', 'lndir', 'lnstat', 'loadkeys', 'loadmof.sh', 'loadunimap', 'locale', 'localectl', 'localedef', 'locate', 'lockfile', 'logger', 'loginctl', 'logname', 'lognormalizer', 'look', 'lp', 'lpoptions', 'lpq', 'lpr', 'lprm', 'lprsetup.sh', 'lpstat', 'lpunlock', 'ls', 'lsar', 'lsattr', 'lsb-release', 'lsb_release', 'lsblk', 'lscpu', 'lsdev', 'lsinitrd', 'lsipc', 'lslocks', 'lslogins', 'lsmem', 'lsmod', 'lsns', 'lsof', 'lss16toppm', 'lsscsi', 'lstopo', 'lstopo-no-graphics', 'lsusb', 'lsusb.py', 'ltrace', 'lua', 'lua5.3', 'luac', 'luac5.3', 'luajittex', 'lualatex', 'luaotfload-tool', 'luatex', 'luit', 'luitx', 'lwp-download', 'lwp-dump', 'lwp-mirror', 'lwp-request', 'lz', 'lz4', 'lz4c', 'lz4cat', 'lzcat', 'lzcmp', 'lzdiff', 'lzegrep', 'lzfgrep', 'lzgrep', 'lzless', 'lzma', 'lzmadec', 'lzmainfo', 'lzmore', 'm17n-db', 'm4', 'mac2unix', 'macptopbm', 'mail', 'mailq', 'mailstat', 'mailx', 'make', 'make_method', 'makealias', 'makedeltaiso', 'makedeltarpm', 'makedepend', 'makedumpfile', 'makedumpfile-R.pl', 'makeg', 'makeindex', 'makeinfo', 'man', 'mandb', 'manpath', 'manweb', 'mapscrn', 'mariadb_config', 'mattrib', 'mbadblocks', 'mcat', 'mcd', 'mcheck', 'mclasserase', 'mcomp', 'mcookie', 'mcopy', 'md5pass', 'md5sum', 'mdatopbm', 'mdel', 'mdeltree', 'mdig', 'mdir', 'mdu', 'memdiskfind', 'memhog', 'memkind-hbw-nodes', 'merge', 'merge-pciids', 'mergecap', 'mergelib', 'mergerepo', 'mergerepo_c', 'mergesolv', 'mesg', 'mev', 'mformat', 'mgrtopbm', 'migratepages', 'migspeed', 'minfo', 'mk_cmds', 'mkafmmap', 'mkdir', 'mkdirhier', 'mkdiskimage', 'mkfifo', 'mkfontdir', 'mkfontscale', 'mkhtmlindex', 'mkhybrid', 'mkindex', 'mkinfodir', 'mkisofs', 'mkmanifest', 'mknod', 'mkocp', 'mkofm', 'mkpasswd', 'mksh', 'mksquashfs', 'mktemp', 'mktexfmt', 'mktexlsr', 'mktexmf', 'mktexpk', 'mktextfm', 'mkzftree', 'mkzimage_cmdline', 'mlabel', 'mmd', 'mmdbresolve', 'mmount', 'mmove', 'mmroff', 'modhash', 'modifyrepo', 'modifyrepo_c', 'modsign-verify', 'mof_compiler', 'mof_compiler-2.7', 'mof_compiler-3.6', 'more', 'mount', 'mountpoint', 'mouse-test', 'mpartition', 'mpi-selector', 'mpi-selector-menu', 'mpicalc', 'mpstat', 'mrd', 'mren', 'mrftopbm', 'ms_print', 'msgattrib', 'msgcat', 'msgcmp', 'msgcomm', 'msgconv', 'msgen', 'msgexec', 'msgfilter', 'msgfmt', 'msggrep', 'msginit', 'msgmerge', 'msgunfmt', 'msguniq', 'mshortname', 'mshowfat', 'mstconfig', 'mstflint', 'mstfwreset', 'mstmcra', 'mstmread', 'mstmtserver', 'mstmwrite', 'mstregdump', 'mstvpd', 'mtools', 'mtoolstest', 'mtvtoppm', 'mtype', 'multixterm', 'munch', 'munge', 'mutt', 'mutter', 'mv', 'mvxattr', 'mxtar', 'mydvichk', 'myquota', 'mysql', 'mysql_config', 'mysqladmin', 'mysqlcheck', 'mysqld_safe_helper', 'mysqldump', 'mysqlimport', 'mysqlshow', 'mzip', 'namei', 'nc', 'ncurses6-config', 'ncursesw6-config', 'neotoppm', 'neqn', 'net', 'net-server', 'net-snmp-cert', 'net-snmp-config', 'net-snmp-create-v3-user', 'netaddr-2.7', 'netcat', 'netkey-tool', 'netstat', 'newaliases', 'newgidmap', 'newgrp', 'newuidmap', 'ngettext', 'nice', 'nisdomainname', 'nl', 'nm', 'nmap', 'nmblookup', 'nmbstatus', 'nohup', 'notify-send', 'npa-tool', 'nproc', 'nroff', 'nsenter', 'nslookup', 'nstat', 'nsupdate', 'ntlm_auth', 'numactl', 'numademo', 'numastat', 'numfmt', 'nvidia-bug-report.sh', 'nvidia-cuda-mps-control', 'nvidia-cuda-mps-server', 'nvidia-debugdump', 'nvidia-persistenced', 'nvidia-settings', 'nvidia-smi', 'nvidia-xconfig', 'oLschema2ldif', 'objcopy', 'objdump', 'oci-image-tool', 'ocount', 'ocsptool', 'od', 'odbc_config', 'odbcinst', 'odd2even', 'ofl', 'oid2name', 'old', 'op-check-perfevents', 'opannotate', 'oparchive', 'openpgp-tool', 'opensc-asn1', 'opensc-explorer', 'opensc-notify', 'opensc-tool', 'openssl', 'openvt', 'operf', 'opgprof', 'ophelp', 'opimport', 'opjitconv', 'opreport', 'oprofile_map_events.pl', 'oprofile_start.sh', 'outpsfheader', 'over', 'p11-kit', 'p11tool', 'pack200', 'pagesize', 'palmtopnm', 'pamaddnoise', 'pamarith', 'pambackground', 'pambayer', 'pamchannel', 'pamcomp', 'pamcrater', 'pamcut', 'pamdeinterlace', 'pamdepth', 'pamdice', 'pamditherbw', 'pamedge', 'pamendian', 'pamenlarge', 'pamexec', 'pamfile', 'pamfix', 'pamfixtrunc', 'pamflip', 'pamfunc', 'pamgauss', 'pamgradient', 'pamlookup', 'pammasksharpen', 'pammixinterlace', 'pammosaicknit', 'pamoil', 'pampaintspill', 'pamperspective', 'pampick', 'pampop9', 'pamrecolor', 'pamrgbatopng', 'pamrubber', 'pamscale', 'pamseq', 'pamshadedrelief', 'pamsharpmap', 'pamsharpness', 'pamsistoaglyph', 'pamslice', 'pamsplit', 'pamstack', 'pamstereogram', 'pamstretch', 'pamstretch-gen', 'pamsumm', 'pamsummcol', 'pamtable', 'pamthreshold', 'pamtilt', 'pamtoavs', 'pamtodjvurle', 'pamtofits', 'pamtogif', 'pamtohdiff', 'pamtohtmltbl', 'pamtojpeg2k', 'pamtompfont', 'pamtooctaveimg', 'pamtopam', 'pamtopdbimg', 'pamtopfm', 'pamtopng', 'pamtopnm', 'pamtosrf', 'pamtosvg', 'pamtotga', 'pamtotiff', 'pamtouil', 'pamtowinicon', 'pamtoxvmini', 'pamundice', 'pamunlookup', 'pamvalidate', 'pamwipeout', 'pamx', 'parse-sgml-catalog.sh', 'passmass', 'passwd', 'paste', 'patch', 'pathchk', 'pax', 'pbmclean', 'pbmlife', 'pbmmake', 'pbmmask', 'pbmminkowski', 'pbmpage', 'pbmpscale', 'pbmreduce', 'pbmtext', 'pbmtextps', 'pbmto10x', 'pbmto4425', 'pbmtoascii', 'pbmtoatk', 'pbmtobbnbg', 'pbmtocis', 'pbmtocmuwm', 'pbmtodjvurle', 'pbmtoepsi', 'pbmtoepson', 'pbmtoescp2', 'pbmtog3', 'pbmtogem', 'pbmtogo', 'pbmtoibm23xx', 'pbmtoicon', 'pbmtolj', 'pbmtoln03', 'pbmtolps', 'pbmtomacp', 'pbmtomatrixorbital', 'pbmtomda', 'pbmtomgr', 'pbmtomrf', 'pbmtonokia', 'pbmtopgm', 'pbmtopi3', 'pbmtopk', 'pbmtoplot', 'pbmtoppa', 'pbmtopsg3', 'pbmtoptx', 'pbmtosunicon', 'pbmtowbmp', 'pbmtox10bm', 'pbmtoxbm', 'pbmtoybm', 'pbmtozinc', 'pbmupc', 'pc1toppm', 'pcre-config', 'pcre2-config', 'pcregrep', 'pcretest', 'pcxtoppm', 'pdbedit', 'pdbimgtopam', 'pdf2dsc', 'pdf2ps', 'pdfdetach', 'pdfetex', 'pdffonts', 'pdfimages', 'pdfinfo', 'pdflatex', 'pdfseparate', 'pdfsig', 'pdftex', 'pdftexi2dvi', 'pdftocairo', 'pdftohtml', 'pdftoppm', 'pdftops', 'pdftotext', 'pdfunite', 'pdksh', 'peekfd', 'perf', 'perl', 'perl5.26.1', 'perlbug', 'perldoc', 'perlivp', 'perlthanks', 'pf2afm', 'pfbtopfa', 'pfmtopam', 'pg_archivecleanup', 'pg_basebackup', 'pg_config', 'pg_controldata', 'pg_ctl', 'pg_dump', 'pg_dumpall', 'pg_isready', 'pg_receivewal', 'pg_recvlogical', 'pg_resetwal', 'pg_restore', 'pg_rewind', 'pg_standby', 'pg_test_fsync', 'pg_test_timing', 'pg_upgrade', 'pg_waldump', 'pgbench', 'pgmabel', 'pgmbentley', 'pgmcrater', 'pgmdeshadow', 'pgmedge', 'pgmenhance', 'pgmhist', 'pgmkernel', 'pgmmake', 'pgmmedian', 'pgmminkowski', 'pgmmorphconv', 'pgmnoise', 'pgmnorm', 'pgmoil', 'pgmramp', 'pgmslice', 'pgmtexture', 'pgmtofs', 'pgmtolispm', 'pgmtopbm', 'pgmtopgm', 'pgmtoppm', 'pgmtosbig', 'pgmtost4', 'pgpewrap', 'pgpring', 'pgrep', 'pi1toppm', 'pi3topbm', 'pic', 'piconv', 'pidstat', 'pigz', 'pinentry', 'pinentry-curses', 'pinentry-tty', 'ping', 'ping6', 'pinky', 'piv-tool', 'pjtoppm', 'pkaction', 'pkcheck', 'pkcs11-tool', 'pkcs11_eventmgr', 'pkcs11_inspect', 'pkcs11_listcerts', 'pkcs11_make_hash_link', 'pkcs11_setup', 'pkcs15-crypt', 'pkcs15-init', 'pkcs15-tool', 'pkexec', 'pkg-config', 'pki', 'pkill', 'pklogin_finder', 'pktopbm', 'pkttyagent', 'pl2pm', 'pmap', 'pngtogd', 'pngtogd2', 'pngtopam', 'pngtopnm', 'pnmalias', 'pnmarith', 'pnmcat', 'pnmcolormap', 'pnmcomp', 'pnmconvol', 'pnmcrop', 'pnmcut', 'pnmdepth', 'pnmenlarge', 'pnmfile', 'pnmflip', 'pnmgamma', 'pnmhisteq', 'pnmhistmap', 'pnmindex', 'pnminterp', 'pnminvert', 'pnmmargin', 'pnmmercator', 'pnmmontage', 'pnmnlfilt', 'pnmnoraw', 'pnmnorm', 'pnmpad', 'pnmpaste', 'pnmpsnr', 'pnmquant', 'pnmquantall', 'pnmremap', 'pnmrotate', 'pnmscale', 'pnmscalefixed', 'pnmshear', 'pnmsmooth', 'pnmsplit', 'pnmstitch', 'pnmtile', 'pnmtoddif', 'pnmtofiasco', 'pnmtofits', 'pnmtojbig', 'pnmtojpeg', 'pnmtopalm', 'pnmtopclxl', 'pnmtoplainpnm', 'pnmtopng', 'pnmtopnm', 'pnmtops', 'pnmtorast', 'pnmtorle', 'pnmtosgi', 'pnmtosir', 'pnmtotiff', 'pnmtotiffcmyk', 'pnmtoxwd', 'pod2html', 'pod2man', 'pod2texi', 'pod2text', 'pod2usage', 'pod_cover', 'podchecker', 'podselect', 'postgres', 'postmaster', 'pphs', 'ppm3d', 'ppmbrighten', 'ppmchange', 'ppmcie', 'ppmcolormask', 'ppmcolors', 'ppmdcfont', 'ppmddumpfont', 'ppmdim', 'ppmdist', 'ppmdither', 'ppmdmkfont', 'ppmdraw', 'ppmfade', 'ppmflash', 'ppmforge', 'ppmglobe', 'ppmhist', 'ppmlabel', 'ppmmake', 'ppmmix', 'ppmnorm', 'ppmntsc', 'ppmpat', 'ppmquant', 'ppmquantall', 'ppmrainbow', 'ppmrelief', 'ppmrough', 'ppmshadow', 'ppmshift', 'ppmspread', 'ppmtoacad', 'ppmtoapplevol', 'ppmtoarbtxt', 'ppmtoascii', 'ppmtobmp', 'ppmtoeyuv', 'ppmtogif', 'ppmtoicr', 'ppmtoilbm', 'ppmtojpeg', 'ppmtoleaf', 'ppmtolj', 'ppmtolss16', 'ppmtomap', 'ppmtomitsu', 'ppmtoneo', 'ppmtopcx', 'ppmtopgm', 'ppmtopi1', 'ppmtopict', 'ppmtopj', 'ppmtopjxl', 'ppmtoppm', 'ppmtopuzz', 'ppmtorgb3', 'ppmtosixel', 'ppmtospu', 'ppmtoterm', 'ppmtotga', 'ppmtouil', 'ppmtowinicon', 'ppmtoxpm', 'ppmtoyuv', 'ppmtoyuvsplit', 'ppmtv', 'ppmwheel', 'pr', 'pr3287', 'prctl', 'preconv', 'printafm', 'printenv', 'printf', 'prjaquota', 'prjquota', 'prlimit', 'procinfo', 'procmail', 'profiles', 'protoc', 'prove', 'prtstat', 'ps', 'ps2ascii', 'ps2eps', 'ps2epsi', 'ps2frag', 'ps2pdf', 'ps2pdf12', 'ps2pdf13', 'ps2pdf14', 'ps2pdfwr', 'ps2ps', 'ps2ps2', 'psbook', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'psidtopgm', 'psktool', 'pslatex', 'pslog', 'psmerge', 'psnup', 'psql', 'psresize', 'psselect', 'pstops', 'pstree', 'pstree.x11', 'pt-tls-client', 'ptar', 'ptardiff', 'ptargrep', 'ptked', 'ptksh', 'ptx', 'purge', 'pwd', 'pwdx', 'pxelinux-options', 'pybabel', 'pybabel-2.7', 'pydoc', 'pydoc3', 'pydoc3.6', 'python', 'python-config', 'python2', 'python2-config', 'python2.7', 'python2.7-config', 'python3', 'python3.6', 'python3.6m', 'pyvenv', 'pyvenv-3.6', 'pywbemcli', 'pywbemcli-2.7', 'pywbemcli-3.6', 'qperf', 'qrttoppm', 'quota', 'quotasync', 'rake', 'rake.ruby.ruby2.5', 'rake.ruby2.5', 'randpkt', 'ranlib', 'rasttopnm', 'raw_ethernet_burst_lat', 'raw_ethernet_bw', 'raw_ethernet_fs_rate', 'raw_ethernet_lat', 'rawshark', 'rawtopgm', 'rawtoppm', 'rbash', 'rcs', 'rcs2log', 'rcsclean', 'rcsdiff', 'rcsmerge', 'rdoc', 'rdoc.ruby.ruby2.5', 'rdoc.ruby2.5', 'rds-info', 'rds-ping', 'rds-stress', 're2c', 'readelf', 'readlink', 'realpath', 'rebuild-jar-repository', 'recode-sr-latin', 'red', 'regdiff', 'regpatch', 'regshell', 'regtree', 'reindexdb', 'remunge', 'rename', 'renice', 'reordercap', 'repo2solv', 'repo2solv.sh', 'repomdxml2solv', 'rescan-scsi-bus.sh', 'reset', 'resize', 'resizecons', 'rev', 'revpath', 'rftp', 'rgb3toppm', 'rgview', 'rgvim', 'ri', 'ri.ruby.ruby2.5', 'ri.ruby2.5', 'rlatopam', 'rletopnm', 'rlog', 'rlogin-cwd', 'rm', 'rmdir', 'rmic', 'rmid', 'rmiregistry', 'rmmof.sh', 'route', 'routef', 'routel', 'rpcclient', 'rpcgen', 'rpm', 'rpm2cpio', 'rpmbuild', 'rpmdb', 'rpmdb2solv', 'rpmgraph', 'rpmkeys', 'rpmlocate', 'rpmmd2solv', 'rpmqpack', 'rpmquery', 'rpms2solv', 'rpmsign', 'rpmspec', 'rpmverify', 'rrdcgi', 'rrdcreate', 'rrdinfo', 'rrdtool', 'rrdupdate', 'rsync', 'rsyncstats', 'ruby', 'ruby-find-versioned', 'ruby.ruby2.5', 'run_perftest_loopback', 'run_perftest_multi_devices', 'runcon', 'rview', 'rvim', 's3270', 'sa-awl', 'sa-check_spamd', 'sa-compile', 'sa-learn', 'sa-update', 'sacct', 'sacctmgr', 'sadf', 'safe-rm', 'safe-rmdir', 'salloc', 'samba-regedit', 'sandbox', 'sar', 'sattach', 'sbatch', 'sbcast', 'sbigtopgm', 'sc-hsm-tool', 'scancel', 'scdaemon', 'scons', 'scons-2.3.0', 'scons-time', 'scons-time-2.3.0', 'sconsign', 'sconsign-2.3.0', 'scontrol', 'scout', 'scp', 'screen', 'screendump', 'script', 'scriptreplay', 'scsi_logging_level', 'scsi_mandat', 'scsi_readcap', 'scsi_ready', 'scsi_satl', 'scsi_start', 'scsi_stop', 'scsi_temperature', 'sdiag', 'sdiff', 'secon', 'sed', 'sedismod', 'sedispol', 'semodule_deps', 'semodule_expand', 'semodule_link', 'semodule_package', 'semodule_unpackage', 'sensors', 'sensors-conf-convert', 'sepolgen-ifgen', 'sepolgen-ifgen-attr-helper', 'sepolicy', 'seq', 'serialver', 'sessreg', 'set_default_volume', 'setarch', 'setcifsacl', 'setfacl', 'setfattr', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setpriv', 'setserial', 'setsid', 'setterm', 'setvesablank', 'setvtrgb', 'setxkbmap', 'sfcbdump', 'sfcbinst2mof', 'sfcbmof', 'sfcbmofpp', 'sfcbproc', 'sfcbrepos', 'sfcbstage', 'sfcbtrace', 'sfcbunstage', 'sfcbuuid', 'sftp', 'sg', 'sg_bg_ctl', 'sg_compare_and_write', 'sg_copy_results', 'sg_dd', 'sg_decode_sense', 'sg_emc_trespass', 'sg_format', 'sg_get_config', 'sg_get_lba_status', 'sg_ident', 'sg_inq', 'sg_logs', 'sg_luns', 'sg_map', 'sg_map26', 'sg_modes', 'sg_opcodes', 'sg_persist', 'sg_prevent', 'sg_raw', 'sg_rbuf', 'sg_rdac', 'sg_read', 'sg_read_attr', 'sg_read_block_limits', 'sg_read_buffer', 'sg_read_long', 'sg_readcap', 'sg_reassign', 'sg_referrals', 'sg_rep_zones', 'sg_requests', 'sg_reset', 'sg_reset_wp', 'sg_rmsn', 'sg_rtpg', 'sg_safte', 'sg_sanitize', 'sg_sat_identify', 'sg_sat_phy_event', 'sg_sat_read_gplog', 'sg_sat_set_features', 'sg_scan', 'sg_seek', 'sg_senddiag', 'sg_ses', 'sg_ses_microcode', 'sg_start', 'sg_stpg', 'sg_stream_ctl', 'sg_sync', 'sg_test_rwbuf', 'sg_timestamp', 'sg_turs', 'sg_unmap', 'sg_verify', 'sg_vpd', 'sg_wr_mode', 'sg_write_buffer', 'sg_write_long', 'sg_write_same', 'sg_write_verify', 'sg_write_x', 'sg_xcopy', 'sg_zone', 'sgather', 'sginfo', 'sgitopnm', 'sgm_dd', 'sgml-register-catalog', 'sgml2xmlcat.sh', 'sgmlcat2x.sh', 'sgp_dd', 'sh', 'sha1pass', 'sha1sum', 'sha224sum', 'sha256sum', 'sha384sum', 'sha512sum', 'shade-jar', 'shar', 'sharesec', 'sharkd', 'shasum', 'shifter', 'shifterimg', 'showchar', 'showconsolefont', 'showkey', 'showrgb', 'shred', 'shuf', 'sigtool', 'simpdftex', 'sinfo', 'sirtopnm', 'size', 'skill', 'skopeo', 'slabtop', 'sldtoppm', 'sleep', 'slencheck', 'sliceprint', 'slptool', 'smbcacls', 'smbclient', 'smbcontrol', 'smbcquotas', 'smbget', 'smbinfo', 'smbpasswd', 'smbprngenpdf', 'smbspool', 'smbtar', 'smbtree', 'smicache', 'smidiff', 'smidump', 'smilint', 'smime_keys', 'smiquery', 'smistrip', 'smixlate', 'smtpd.py', 'snice', 'snmp-bridge-mib', 'snmpbulkget', 'snmpbulkwalk', 'snmpcheck', 'snmpconf', 'snmpdelta', 'snmpdf', 'snmpget', 'snmpgetnext', 'snmpinform', 'snmpkey', 'snmpnetstat', 'snmpset', 'snmpstatus', 'snmptable', 'snmptest', 'snmptls', 'snmptranslate', 'snmptrap', 'snmpusm', 'snmpvacm', 'snmpwalk', 'socklist', 'soelim', 'sort', 'spamassassin', 'spamc', 'spawn_console', 'spawn_login', 'spax', 'spctoppm', 'speaker-test', 'splain', 'split', 'spottopgm', 'sprio', 'sprof', 'sputoppm', 'sqlite3', 'sqlite3_analyzer', 'sqliterepo', 'sqliterepo_c', 'squeue', 'squidclient', 'sreport', 'srftopam', 'srptool', 'srun', 'ss', 'ssh', 'ssh-add', 'ssh-agent', 'ssh-copy-id', 'ssh-keygen', 'ssh-keyscan', 'sshare', 'sss_ssh_authorizedkeys', 'sss_ssh_knownhostsproxy', 'sstat', 'st4topgm', 'stap', 'stap-merge', 'stap-report', 'stapbpf', 'staprun', 'stapsh', 'star', 'startx', 'stat', 'states', 'stdbuf', 'stdlogctl', 'strace', 'strace-graph', 'strace-log-merge', 'strigger', 'strings', 'strip', 'stty', 'su', 'sum', 'sunicontopnm', 'suse-update-mime-defaults', 'susetags2solv', 'svgtopam', 'sview', 'svn', 'svn-bench', 'svn-populate-node-origins-index', 'svn_apply_autoprops.py', 'svnadmin', 'svnauthz', 'svnauthz-validate', 'svnbench', 'svndiff', 'svndumpfilter', 'svnfsfs', 'svngrep', 'svnlook', 'svnmucc', 'svnraisetreeconflict', 'svnrdump', 'svnserve', 'svnsync', 'svnversion', 'sync', 'syslinux', 'syslinux-mtools', 'syslinux2ansi', 'systemctl', 'systemd-analyze', 'systemd-ask-password', 'systemd-cat', 'systemd-cgls', 'systemd-cgtop', 'systemd-delta', 'systemd-detect-virt', 'systemd-escape', 'systemd-firstboot', 'systemd-hwdb', 'systemd-inhibit', 'systemd-machine-id-setup', 'systemd-mount', 'systemd-notify', 'systemd-path', 'systemd-run', 'systemd-socket-activate', 'systemd-stdio-bridge', 'systemd-sysusers', 'systemd-tmpfiles', 'systemd-tty-ask-password-agent', 'systemd-umount', 'systool', 'tabs', 'tac', 'tack', 'tail', 'tapestat', 'tar', 'targetcli', 'targetcli-3.6', 'targetctl', 'targetctl-3.6', 'tartest', 'taskset', 'tbl', 'tcl3270', 'tclsh', 'tclsh8.6', 'tcsh', 'tee', 'telnet', 'termprobes', 'test', 'test_igmpv3_join', 'testparm', 'testsaslauthd', 'testsolv', 'tethereal', 'tex', 'texconfig', 'texconfig-dialog', 'texconfig-sys', 'texhash', 'texi2any', 'texi2dvi', 'texi2pdf', 'texindex', 'texlinks', 'texlua', 'texluac', 'texluajit', 'texluajitc', 'text2pcap', 'tftp', 'tgatoppm', 'tgz', 'thinkjettopbm', 'thumbpdf', 'tic', 'tidy_changelog', 'tifftopnm', 'time', 'timed-read', 'timed-run', 'timedatectl', 'timeout', 'tkcon', 'tkjpeg', 'tkmib', 'tknewsbiff', 'tload', 'toe', 'top', 'touch', 'tpm_sealdata', 'tpm_unsealdata', 'tput', 'tr', 'trace', 'tracepath', 'tracepath6', 'traptoemail', 'tree', 'troff', 'true', 'truncate', 'trust', 'tset', 'tshark', 'tsort', 'tty', 'turbostat', 'tzselect', 'ucs2any', 'udevadm', 'uil', 'ul', 'ulockmgr_server', 'umoci', 'umount', 'uname', 'uname26', 'unar', 'unbuffer', 'uncompress', 'unexpand', 'unicode_start', 'unicode_stop', 'uniq', 'unix-lpr.sh', 'unix2dos', 'unix2mac', 'unlink', 'unlz4', 'unlzma', 'unmunch', 'unmunge', 'unpack200', 'unpigz', 'unrar', 'unrar_wrapper', 'unshar', 'unshare', 'unsquashfs', 'unxz', 'unzip', 'unzip-plain', 'unzipsfx', 'unzipsfx-plain', 'update-desktop-database', 'update-mime-database', 'update-xml-catalog', 'updatedb', 'updateinfoxml2solv', 'updmap', 'updmap-sys', 'updmap-user', 'uptime', 'urlgrabber', 'usb-devices', 'usbhid-dump', 'users', 'ustar', 'utmpdump', 'uudecode', 'uuencode', 'uuidgen', 'uuidparse', 'uxterm', 'uz', 'vacuumdb', 'vacuumlo', 'valgrind', 'valgrind-di-server', 'valgrind-listener', 'vdir', 'vdltodmx', 'verify_blkparse', 'vgdb', 'vi', 'view', 'vim', 'vim-nox11', 'vimdiff', 'vimtutor', 'vitmp', 'vlock', 'vmstat', 'vncconfig', 'vncpasswd', 'vncpasswd.arg', 'vncserver', 'vttest', 'vtysh', 'w', 'w3m', 'w3mman', 'wall', 'watch', 'watchgnupg', 'wayland-scanner', 'wbemai', 'wbemain', 'wbemcat', 'wbemci', 'wbemcli', 'wbemcli.py', 'wbemcli.py-2.7', 'wbemcli.py-3.6', 'wbemcm', 'wbemcmx', 'wbemdc', 'wbemdi', 'wbemec', 'wbemecn', 'wbemei', 'wbemein', 'wbemgc', 'wbemgcd', 'wbemgi', 'wbemgp', 'wbemmi', 'wbemri', 'wbemrin', 'wbemsp', 'wbinfo', 'wbmptopbm', 'wc', 'wdctl', 'webpng', 'westcos-tool', 'wget', 'whatis', 'whereis', 'which', 'who', 'whoami', 'whois', 'widget', 'winicontopam', 'winicontoppm', 'wish', 'wish8.6', 'wmidump', 'wmixtract', 'wordforms', 'wordlist2hunspell', 'write', 'x026', 'x0vncserver', 'x3270', 'x3270if', 'x86_64', 'x86_64-suse-linux-gnu-pkg-config', 'x86_energy_perf_policy', 'xargs', 'xauth', 'xbmtopbm', 'xconsole', 'xdg-desktop-icon', 'xdg-desktop-menu', 'xdg-email', 'xdg-icon-resource', 'xdg-mime', 'xdg-open', 'xdg-screensaver', 'xdg-settings', 'xdg-su', 'xdg-terminal', 'xdg_menu', 'xdg_menu_su', 'xdm', 'xdmxconfig', 'xf86debug', 'xgettext', 'xhost', 'xid_logger.sh', 'ximtoppm', 'xinit', 'xkbcomp', 'xkibitz', 'xli', 'xlito', 'xloadimage', 'xmessage', 'xmkmf', 'xml2-config', 'xml_grep', 'xml_merge', 'xml_pp', 'xml_spellcheck', 'xml_split', 'xmlcatalog', 'xmllint', 'xmltest', 'xmlwf', 'xmodmap', 'xorg-backtrace', 'xpath', 'xpmtoppm', 'xprop', 'xpstat', 'xrdb', 'xscreensaver', 'xscreensaver-command', 'xscreensaver-demo', 'xscreensaver-gl-helper', 'xset', 'xsetbg', 'xsetroot', 'xslt-config', 'xsltproc', 'xsubpp', 'xterm', 'xtermset', 'xview', 'xvminitoppm', 'xwdtopnm', 'xxd', 'xz', 'xzcat', 'xzcmp', 'xzdec', 'xzdiff', 'xzegrep', 'xzfgrep', 'xzgrep', 'xzless', 'xzmore', 'xznew', 'yacc', 'yat2m', 'ybmtopbm', 'yelp', 'yes', 'ypcat', 'ypchfn', 'ypchsh', 'ypdomainname', 'ypmatch', 'yppasswd', 'ypwhich', 'yuvsplittoppm', 'yuvtoppm', 'yuy2topam', 'yzpper', 'zcat', 'zcmp', 'zdiff', 'zegrep', 'zeisstopnm', 'zenity', 'zfgrep', 'zforce', 'zgrep', 'zip', 'zipcloak', 'zipdetails', 'zipgrep', 'zipgrep-plain', 'zipinfo', 'zipnote', 'zipsplit', 'zless', 'zmore', 'znew', 'zoo', 'zsh', 'zypp-CheckAccessDeleted', 'zypp-NameReqPrv', 'zypper'] ['arch', 'awk', 'basename', 'bash', 'blkparse', 'blktrace', 'btrace', 'cat', 'chgrp', 'chmod', 'chown', 'chvt', 'clrunimap', 'cp', 'cpio', 'csh', 'date', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-monitor', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dd', 'dd_rescue', 'deallocvt', 'df', 'dmesg', 'dnsdomainname', 'domainname', 'dumpkeys', 'echo', 'ed', 'egrep', 'ex', 'false', 'fgconsole', 'fgrep', 'fillup', 'find', 'findmnt', 'fsync', 'fuser', 'gawk', 'getkeycodes', 'getunimap', 'grep', 'guess_encoding', 'gunzip', 'gzip', 'hostname', 'ifconfig', 'initviocons', 'ip', 'kbd_mode', 'kbdinfo', 'kbdrate', 'keyctl', 'kill', 'ksh', 'lksh', 'ln', 'loadkeys', 'loadunimap', 'logger', 'login', 'ls', 'lsblk', 'lsmod', 'mail', 'mapscrn', 'md5sum', 'mkdir', 'mknod', 'mksh', 'mktemp', 'more', 'mount', 'mv', 'netstat', 'nisdomainname', 'openvt', 'outpsfheader', 'pdksh', 'pgrep', 'pidof', 'ping', 'ping6', 'pkill', 'ps', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'pwd', 'readlink', 'resizecons', 'rm', 'rmdir', 'route', 'rpm', 'screendump', 'sed', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setvesablank', 'setvtrgb', 'sh', 'showconsolefont', 'showkey', 'sleep', 'sort', 'spawn_console', 'spawn_login', 'stat', 'stty', 'su', 'sync', 'systemctl', 'systemd', 'systemd-ask-password', 'tar', 'tcsh', 'touch', 'tracepath', 'tracepath6', 'true', 'umount', 'uname', 'unicode_start', 'unicode_stop', 'usleep', 'vi', 'vim', 'ypdomainname', 'zcat', 'zsh'] ['gss-client', 'k5srvutil', 'kadmin', 'kdestroy', 'kinit', 'klist', 'kpasswd', 'krb5-config', 'ksu', 'kswitch', 'ktutil', 'kvno', 'sclient', 'sim_client', 'uuclient'] ['krb5-send-pr'] ['csmlversion', 'pe_cleanup_callback.sh', 'pe_postmount_callback.sh', 'pe_setup_callback.sh', 'set-gcc-libs', 'set_default', 'setup_shell_rcs.sh'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/mapnames...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/mapnames...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/mapnames...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/mapnames...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/mapnames...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/mapnames...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/mapnames...not found Checking for program /opt/cray/alps/default/bin/mapnames...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/mapnames...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/mapnames...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/mapnames...not found Checking for program /global/common/cori/software/altd/2.0/bin/mapnames...not found Checking for program /usr/common/software/bin/mapnames...not found Checking for program /usr/common/mss/bin/mapnames...not found Checking for program /usr/common/nsg/bin/mapnames...not found Checking for program /opt/ovis/bin/mapnames...not found Checking for program /opt/ovis/sbin/mapnames...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/lib/mit/bin/mapnames...not found Checking for program /usr/lib/mit/sbin/mapnames...not found Checking for program /opt/cray/pe/bin/mapnames...not found Checking for program /global/homes/m/madams/petsc_install/petsc/lib/petsc/bin/win32fe/mapnames...not found Unable to find programs ['mapnames'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['ddt-mpirun', 'forge', 'ddt', 'perf-report', 'forge-probe', 'map', 'forge-client', 'allinea-client', 'make-profiler-libraries', 'forge-mpirun', 'ddt-client'] ['qmlmin', 'iptest3', 'dask-mpi', 'sdbadmin', 'gss-client', 'cs2cs', 'ristosds', 'fc-scan', 'jupyter-kernel', 'navigator-updater', 'curl-config', 'bzgrep', 'xsltproc', 'jupyter-serverextension', 'lz4', 'runxlrd.py', 'pydoc', 'elbadmin', 'perror', 'dask-remote', 'geos-config', 'fitsheader', 'h5import', 'f2py', 'gif2hdf', 'fc-validate', 'glib-gettextize', 'pycc', 'pal2rgb', 'sqlite3_analyzer', 'sphinx-apidoc', 'uic', 'rst2html5.py', 'lzma', 'xzcmp', 'route53', 'tput', 'gst-discoverer-1.0', 'ncinfo', 'gsettings', 'sip', 'pip', 'hdftopal', 'pydoc3', 'h5mkgrp', 'gio', 'xmlwf', 'pyvenv-3.7', 'bsdtar', 'ncgen', 'tiffcmp', 'icuinfo', 'gencnval', 'pandoc', 'cph', 'ipython', 'xzgrep', 'pyvenv', 'pngfix', 'qmlimportscanner', 'rst2s5.py', 'h5redeploy', 'instance_events', 'ipcluster', 'qdoc', 'qtplugininfo', 'hdfed', 'jupyter-nbconvert', 'makeconv', 'tiffmedian', 'h5debug', 'qhelpgenerator', 'conda-inspect', 'gobject-query', 'conda-build', 'volint', 'toe', 'xml2-config', 'c_rehash', 'protoc', 'pep8', 'qcollectiongenerator', 'nc-config', 'fitsinfo', 'flask', 'hb-view', 'tic', 'kvno', 'lzcat', 'gdbus-codegen', 'conda-env', 'gst-inspect-1.0', 'dbus-send', 'h5c++', 'h5repack', 'wish', 'curve_keygen', 'pytest', 'tiffset', 'xzmore', 'xz', 'pyjson5', 'unlzma', 'unzstd', 'djpeg', 'glib-mkenums', 'fetch_file', 'gunicorn', 'asadmin', 'designer', 'qdbus', 'bokeh', 'dbus-uuidgen', 'sphinx-quickstart', 'infocmp', 'icu-config', 'ipengine', 'jpegtran', 'tiff2pdf', 'rst2html4.py', 'jupyter-bundlerextension', 'gst-typefind-1.0', 'h5cc', 'genbrk', 'klist', 'samp_hub', 'jpeg2hdf', 'pyflakes', 'launch_instance', 'h5stat', 's3put', 'bzfgrep', 'fc-cat', 'h5ls', 'qdbusviewer', 'cairo-trace', 'nad2bin', 'patchelf', 'lzegrep', 'jupyter-labextension', 'rst2pseudoxml.py', 'pandoc-citeproc', 'tiff2rgba', 'pcretest', 'h5copy', 'bzdiff', 'ptrepack', 'mturk', 'lzcmp', 'glib-genmarshal', 'pygmentize', 'fixqt4headers.pl', 'lzmainfo', 'bzless', 'assistant', 'qmllint', 'lss3', 'bzip2recover', 'f2py3.7', 'qmlprofiler', 'dask-scheduler', 'lz4c', 'bsdcat', 'python', 'dynamodb_load', 'imageio_remove_bin', 'cfadmin', 'dbus-monitor', 'rst2odt_prepstyles.py', 'tabulate', 'r8tohdf', 'cwutil', 'conda-convert', 'gif2h5', 'xmllint', 'taskadmin', 'bsdcpio', 'fribidi', 'bzcat', 'rcc', 'curl', 'h5unjam', 'h4redeploy', 'isort', 'tqdm', 'tiff2ps', 'bundle_image', 'dbus-launch', 'gtester', 'anaconda', 'easy_install', 'dask-ssh', 'hdf24to8', 'fc-pattern', 'qgltf', 'pg_config', 'k5srvutil', 'hdfcomp', 'sphinx-autogen', 'anaconda-navigator', 'list_instances', 'python3-config', 'pkgdata', 'dbus-test-tool', 'hrepack', 'fax2ps', 'epylint', 'vshow', 'freetype-config', 'jupyter-migrate', 'rst2man.py', 'cq', 'infotocap', 'tclsh8.6', 'pixeltool', 'reset', 'compile_et', 'xzegrep', 'jupyter-console', 'libpng16-config', 'qmlplugindump', 'xmlpatternsvalidator', 'qwebengine_convert_dict', 'hdftor8', 'tset', 'odbcinst', 'gendict', 'gapplication', 'jupyter-kernelspec', 'pasteurize', 'isql', 'python3.7-config', 'qdbusxml2cpp', 'rst2odt.py', 'jupyter-qtconsole', 'pango-list', 'dask-submit', 'kdestroy', 'dbus-run-session', 'xml2-config.bak', 'gresource', 'bzip2', 'zstd', 'zstdmt', 'h5clear', 'h5diff', 'deactivate', '2to3-3.7', 'gdbus', 'qdbuscpp2xml', 'gst-device-monitor-1.0', 'openssl', 'rg', 'jlpm', 'xslt-config', 'bzcmp', 'unlz4', 'fc-cache', 'bunzip2', 'xmlpatterns', 'sphinx-build', 'pango-view', 'rstpep2html.py', 'gencfu', 'vmake', 'conda-skeleton', 'genrb', 'futurize', 'hdf8to24', 'fc-conflist', 'lzgrep', 'wish8.6', 'qtpaths', 'sclient', 'rdjpgcom', 'hdfls', 'spyder', 'tiffinfo', 'libtool', 'cygdb', 'sim_client', 'qlalr', 'jupyter-troubleshoot', 'h4cc', 'iusql', 'pt2to3', 'wheel', 'jupyter-nbextension', 'mysql_config', 'tabs', 'hdf2jpeg', 'glib-compile-schemas', 'fc-query', 'ncdump', 'invproj', 'conda-metapackage', 'h52gif', 'rst2html.py', 'f2py3', 'nosetests', 'skivi', 'png-fix-itxt', 'libtoolize', 'anaconda-project', 'chardetect', 'nccopy', 'glib-compile-resources', 'tiffdump', 'bzmore', 'qml', 'gtester-report', 'dynamodb_dump', 'lzless', 'h5watch', 'xmlcatalog', 'idle3', 'dbus-daemon', 'jupyter-labhub', 'odbc_config', 'nc3tonc4', 'tiffcp', 'jupyter', 'hdfimport', 'qt.conf', 'showtable', 'py.test', 'gst-stats-1.0', 'python3.7m', 'iptest', 'zstdcat', 'ktutil', 'kinit', 'dbus-cleanup-sockets', 'conda-server', 'canbusutil', 'qmlcachegen', 'lzfgrep', 'cct', 'pttree', 'python3', 'lzmore', 'numba', 'qtattributionsscanner', 'conda-develop', 'pyuic5', 'glacier', 'idle3.7', 'lrelease', 'lzmadec', 'qscxmlc', 'h5fc', 'xzless', 'jsonschema', 'lz4cat', 'hdf2gif', 'wrjpgcom', 'hdp', 'tiffsplit', 'pyrcc5', 'kswitch', 'h5jam', 'ipython3', 'conda-verify', 'qmake', 'nc4tonc3', 'kill_instance', 'moc', 'vba_extract.py', 'ptdump', 'geod', 'hb-shape', 'qtdiag', 'gst-play-1.0', 'krb5-config', 'ppm2tiff', 'pydoc3.7', 'cython', 'python3.7', 'jupyter-notebook', 'uuclient', 'keyring', 'gie', 'pcre-config', 'h5repart', 'hb-subset', 'fax2tiff', 'xzdiff', 'rst2xetex.py', 'h4_ncdump', 'fitscheck', 'pycodestyle', 'clear', 'gst-launch-1.0', 'repc', 'cjpeg', 'h5dump', 'kpasswd', 'xzcat', 'rst2xml.py', 'ipcontroller', 'lconvert', 'activate', 'h5perf_serial', 'sqlite3', 'h5format_convert', 'ksu', 'captoinfo', 'lupdate', 'hdfpack', 'lzdiff', 'dbus-update-activation-environment', 'conda-debug', 'conda-render', 'syncqt.pl', 'pybabel', 'symilar', 'bzegrep', 'pyreverse', 'paltohdf', 'fc-list', 'my_print_defaults', 'xzfgrep', 'tiffdither', 'derb', 'dltest', 'cythonize', 'proj', 'tiffcrop', 'qhelpconverter', 'pkginfo', 'raw2tiff', 'pyami_sendmail', 'fits2bitmap', 'qmltestrunner', 'jupyter-trust', 'python3.7m-config', 'pylint', 'kadmin', 'xzdec', 'isympy', 'qmlscene', 'h4_ncgen', 'rst2latex.py', 'imageio_download_bin', 'binstar', 'jupyter-lab', 'conda-index', 'conda', 'wcslint', 'libpng-config', 'tclsh', 'pylupdate5', 'linguist', 'unxz', 'pcregrep', 'slencheck', 'ncursesw6-config', 'qmleasing', 'fitsdiff', 'gio-querymodules', '2to3', 'hdiff', 'jupyter-run', 'ncgen3', 'hdfunpac', 'tiff2bw', 'hb-ot-shape-closure', 'invgeod', 'dask-worker', 'fc-match'] Warning accessing /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin gives errors: [Errno 2] No such file or directory: '/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin' ['ctest', 'cpack', 'cmake', 'ccmake'] ['cray_mpiio_example_gnuplot.sh', 'cray_mpiio_example_gnuplot_by_ranks.sh', 'cray_mpiio_example_gnuplot_multiplot.sh', 'cray_mpiio_example_gnuplot_summary.sh', 'cray_mpiio_gen_data', 'cray_mpiio_summary'] ['rca-helper', 'rca-hssconfig', 'rca_arpd', 'rca_send_booted'] ['apinit', 'apinit_rca_notify'] Warning accessing /opt/cray/alps/default/bin gives errors: [Errno 2] No such file or directory: '/opt/cray/alps/default/bin' ['jattach', 'jdetach', 'jkill', 'jsethid', 'jstat', 'jwait'] ['2.25.0.craype.ld', 'CC', 'cc', 'driver', 'ftn'] ['codecov', 'dbmerge', 'fortcom', 'fpp', 'gcore-ia', 'gdb-ia', 'icc', 'icc.cfg', 'icpc', 'icpc.cfg', 'ifort', 'ifort.cfg', 'libcilkrts.so.5', 'loopprofileviewer.csh', 'loopprofileviewer.sh', 'map_opts', 'mcpcom', 'offload_extract', 'profdcg', 'profmerge', 'profmergesampling', 'proforder', 'tselect', 'x86_64-linux.env', 'xiar', 'xiar.cfg', 'xild', 'xild.cfg'] ['check_perm.sh', 'backup.sh', 'crontab.txt', 'pyLD.py', 'ld_db.sh', 'ld', 'get_vasp_inputs.sh', 'hpss_backup.sh', 'aprun_db.sh', 'aprun.save', 'upload_db_lds.sh'] ['usgrsu', 'list-ssh-certs', 'wheres_my_job.py', 'ftp', 'prjdirs', 'tape_stats', 'stripe_large', 'hpss_target_directory_creation.py', 'getnim', 'dirquota', 'meshcoords', 'lmstat', 'fixdots2', 'take', 'find_and_kill', 'check-mpi.cce.cori', 'bbcp', 'mk_pip_cabundle.sh', 'nids_to_ranges', 'sw_support', 'stripe_medium', 'lspkg', 'fix_perms', 'gperf', 'fix_usg', 'burp', 'emptydots', 'hpss_file_sorter.script', 'check-mpi.intel.cori', 'sqs1', 'prjbdirs', 'linkinfo.sh', 'stripe_medium.backup', 'hpssquota', 'mods', 'hpss_file_sorter.py', 'o:q!', 'check-hybrid.intel.cori', 'findemptydirs', 'sshproxy.sh', 'check-mpi.gnu.cori', 'sqs.old', 'sqs', 'stripe_large.backup', 'jobstats', 'cmnquota', 'upinter', 'prjquota', 'give', 'pe_changes.py', 'prjaquota', 'sqs.new', 'check_license.sh', 'susw', 'xcmap', 'gen_nodelist.sh', 'svnlook', 'esl.sh', 'fixdots', 'home_over', 'check-hybrid.gnu.cori', 'hpss_file_sorter.py~', 'nc', 'stripe_small.backup', 'static_linking_ddt_md_th', 'swcats', 'nedit', 'check-hybrid.cce.cori', 'iris', 'stripe_small', 'dotmgr', 'hold_prjquota', 'home_usage', 'mynersc_wrappers', 'static_linking_ddt_md', 'wheres_my_job.py.bak', 'module_restore.sh', 'tape_order', 'tedi', 'ndots', 'nersc_host', 'cfsquota', 'not_used', 'run-and-watch.sh', 'generate_sorted_list_for_hpss.py', 'cmark', 'findtouch'] ['hsi', 'ftp', 'wfile', '.pftp_client_73', 'obins', '.htar.exe', '.hsi.exe', 'mkhpsstok', 'htar', 'hpss_avail', 'hsi_testcos', 'pftp'] Warning accessing /usr/common/nsg/bin gives errors: [Errno 2] No such file or directory: '/usr/common/nsg/bin' ['envldms.sh', 'ldms-csv-anonymize', 'ldms-csv-export-sos', 'ldms-l2_test.sh', 'ldms-meminfo.sh', 'ldms-pedigree', 'ldms-plugins.sh', 'ldms-py-rename.sh', 'ldms-py-subset_test.sh', 'ldms-py-syslog.sh', 'ldms-py-varset.sh', 'ldms-static-test.sh', 'ldms_ban.sh', 'ldms_local_opa2test.sh', 'ldmsd_controller', 'lmq', 'lsdate', 'ods_dump', 'sos-db', 'sos-import-csv', 'sos-monitor', 'sos-part', 'sos-schema', 'sos_cmd', 'sos_part_create', 'sos_part_delete', 'sos_part_export', 'sos_part_index', 'sos_part_modify', 'sos_part_move', 'sos_part_query'] ['.ldms-wrapper', 'json_test', 'ldms-aggd', 'ldms_ls', 'ldmsaggctl', 'ldmsctl', 'ldmsd', 'ldmsd_sos_init', 'ldmsd_stream_publish', 'ldmsd_stream_subscribe'] ['add.modules', 'mkroot', 'modulecmd'] [] ['.hmac256.hmac', '411toppm', 'BackGround', 'Backarrow2BackSpace', 'Backarrow2Delete', 'Mail', 'Signature_conversion', 'WebKitWebDriver', 'X', 'X11', 'Xdmx', 'Xephyr', 'Xnest', 'Xorg', 'Xvfb', 'Xvnc', '[', 'a4toa5', 'ac', 'aclocal', 'aclocal-1.15', 'aconnect', 'acpi_validate', 'acpibin', 'acpiexamples', 'acpiexec', 'acpihelp', 'acpinames', 'acpisrc', 'acpixtract', 'activation-client', 'addr2line', 'affixcompress', 'afs5log', 'agentxtrap', 'all_notes_off', 'allcm', 'allec', 'allneeded', 'alsaloop', 'alsamixer', 'alsatplg', 'alsaucm', 'amidi', 'amixer', 'amuFormat.sh', 'analyze', 'annotate', 'ansible', 'ansible-doc', 'ansible-galaxy', 'ansible-playbook', 'ansible-pull', 'ansible-vault', 'ant', 'antRun', 'antlr', 'antlr-config', 'anytopnm', 'aplay', 'aplaymidi', 'appdata2solv', 'applydeltaiso', 'applydeltarpm', 'apropos', 'ar', 'arch', 'arecord', 'arecordmidi', 'arpaname', 'as', 'asciitopgm', 'aseqdump', 'aseqnet', 'asn1Coding', 'asn1Decoding', 'asn1Parser', 'at', 'atktopbm', 'atq', 'atrm', 'attr', 'audit2allow', 'audit2why', 'aulast', 'aulastlog', 'ausyscall', 'autoconf', 'autoexpect', 'autoheader', 'autom4te', 'automake', 'automake-1.15', 'autopoint', 'autoreconf', 'autoscan', 'autoupdate', 'auvirt', 'avstopam', 'awk', 'b2sum', 'base32', 'base64', 'basename', 'bashbug', 'batch', 'bbox', 'bc', 'bdftogd', 'bdftruncate', 'bgp_btoa', 'bibtex', 'binhex.pl', 'bioradtopgm', 'bison', 'blkiomon', 'blkrawverify', 'bmptopnm', 'bmptoppm', 'bno_plot.py', 'bonnie', 'bonobo-activation-run-query', 'bonobo-slay', 'bootctl', 'broadwayd', 'brushtopbm', 'btrecord', 'btreplay', 'btt', 'build-classpath', 'build-classpath-directory', 'build-jar-repository', 'bunzip2', 'busctl', 'busybox', 'busybox.install', 'bwrap', 'bzcat', 'bzcmp', 'bzdiff', 'bzegrep', 'bzfgrep', 'bzgrep', 'bzip2', 'bzip2recover', 'bzless', 'bzmore', 'bznew', 'c++', 'c++filt', 'c3270', 'c_rehash', 'cal', 'call-browser', 'callgrind_annotate', 'callgrind_control', 'cameratopam', 'cancel', 'capinfos', 'captoinfo', 'captype', 'card_eventmgr', 'cardos-tool', 'cat', 'catchsegv', 'catman', 'cc', 'ccmake', 'ccmakedep', 'certtool', 'cg_annotate', 'cg_diff', 'cg_merge', 'chacl', 'chage', 'chardetect', 'chardetect-2.7', 'chardetect-3.6', 'chattr', 'chcat', 'chcon', 'check-binary-files', 'checkmodule', 'checkpolicy', 'chfn', 'chgrp', 'chkconfig', 'chkstat', 'chmem', 'chmod', 'chmorph', 'chooser', 'chown', 'chronyc', 'chroot', 'chrp-addnote', 'chrt', 'chsh', 'chvt', 'ci', 'cifscreds', 'cifsdd', 'cifsiostat', 'cistopbm', 'cksum', 'clamav-config', 'clambc', 'clamconf', 'clamdscan', 'clamdtop', 'clamscan', 'clean-binary-files', 'cleanlinks', 'clear', 'clrunimap', 'clusterdb', 'cmake', 'cmp', 'cmuwmtopbm', 'cnf', 'co', 'col', 'colcrt', 'colrm', 'column', 'combinedeltarpm', 'comm', 'command-not-found', 'compile_et', 'comps2solv', 'convmv', 'corelist', 'cp', 'cpack', 'cpan', 'cpio', 'cpp', 'cpp-7', 'cpupcstat', 'cpupower', 'cray-nvidia-acct', 'cray-nvidia-energy', 'cray-xid-logger', 'crc32', 'create-jar-links', 'createdb', 'createrepo', 'createrepo_c', 'createuser', 'crontab', 'cryptdir', 'cryptoflex-tool', 'csh', 'csplit', 'ctags', 'ctags-exuberant', 'ctest', 'cups-config', 'cupstestdsc', 'cupstestppd', 'curl', 'curl-config', 'cut', 'cvs', 'cvsbug', 'cvslock', 'cvt', 'cyrus_sasl_sample_client', 'cyrus_sasl_sample_server', 'dasher', 'date', 'db48_archive', 'db48_checkpoint', 'db48_deadlock', 'db48_dump', 'db48_hotbackup', 'db48_load', 'db48_printlog', 'db48_recover', 'db48_sql', 'db48_stat', 'db48_upgrade', 'db48_verify', 'db_archive', 'db_checkpoint', 'db_deadlock', 'db_dump', 'db_hotbackup', 'db_load', 'db_printlog', 'db_recover', 'db_sql', 'db_stat', 'db_upgrade', 'db_verify', 'dbilogstrip', 'dbiprof', 'dbiproxy', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-launch', 'dbus-launch.nox11', 'dbus-launch.x11', 'dbus-monitor', 'dbus-run-session', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dbwrap_tool', 'dc', 'dconf', 'dd', 'dd_rescue', 'ddbugtopbm', 'deallocvt', 'debinhex.pl', 'decryptdir', 'deltainfoxml2solv', 'delv', 'desktop-file-edit', 'desktop-file-install', 'desktop-file-validate', 'desktop-launch', 'devdump', 'df', 'dialog', 'diff', 'diff-jars', 'diff3', 'diffpp', 'dig', 'dir', 'dircolors', 'dirmngr', 'dirmngr-client', 'dirmngr_ldap', 'dirname', 'disable-paste', 'dislocate', 'display-buttons', 'display-coords', 'dkimsign.pl', 'dkimverify.pl', 'dltest', 'dm_date', 'dm_zdump', 'dmesg', 'dmxaddinput', 'dmxaddscreen', 'dmxinfo', 'dmxreconfig', 'dmxresize', 'dmxrminput', 'dmxrmscreen', 'dmxtodmx', 'dmxwininfo', 'dnie-tool', 'dnsdomainname', 'domainname', 'dos2unix', 'doxygen', 'dracut', 'driverless', 'dropdb', 'dropuser', 'drpmsync', 'dtrace', 'du', 'dump2psl.pl', 'dump2slvl.pl', 'dumpcap', 'dumpkeys', 'dumpsexp', 'dumpsolv', 'dvi2fax', 'dviasm', 'dvibook', 'dviconcat', 'dvidvi', 'dvigif', 'dvilualatex', 'dviluatex', 'dvipdf', 'dvipng', 'dvired', 'dviselect', 'dvisvgm', 'dvitodvi', 'dwp', 'dwz', 'easy_install', 'easy_install-2.7', 'ebrowse', 'echo', 'echo-client-2', 'ecpg', 'ed', 'edit', 'edit-xml-catalog', 'edit-xml-catalog.sh', 'editcap', 'egk-tool', 'egrep', 'egview', 'egvim', 'eidenv', 'eject', 'elfedit', 'emacs', 'emacs-gtk', 'emacs-x11', 'emacsclient', 'embedspu', 'enc2xs', 'encguess', 'encode_keychange', 'enscript', 'enscript.bin', 'env', 'envsubst', 'eog', 'eps2eps', 'epsffit', 'eqn', 'erb', 'erb.ruby2.5', 'escp2topbm', 'espeak', 'etags', 'etex', 'eu-addr2line', 'eu-ar', 'eu-elfcmp', 'eu-elfcompress', 'eu-elflint', 'eu-findtextrel', 'eu-make-debug-archive', 'eu-nm', 'eu-objdump', 'eu-ranlib', 'eu-readelf', 'eu-size', 'eu-stack', 'eu-strings', 'eu-strip', 'eu-unstrip', 'eventlogadm', 'eview', 'evim', 'evince', 'evince-previewer', 'evince-thumbnailer', 'ex', 'expand', 'expect', 'expiry', 'expr', 'extlinux', 'extractres', 'eyuvtoppm', 'f2py', 'f2py2', 'f2py2.7', 'f2py3', 'f2py3.6', 'factor', 'fallocate', 'false', 'fastjar', 'fc-cache', 'fc-cache32', 'fc-cat', 'fc-cat32', 'fc-list', 'fc-list32', 'fc-match', 'fc-match32', 'fc-pattern', 'fc-query', 'fc-scan', 'fc-validate', 'fdupes', 'fetchmail', 'fgconsole', 'fgrep', 'fiascotopnm', 'file', 'file-roller', 'filesize', 'fillup', 'fincore', 'find', 'find-jar', 'findmnt', 'findsmb', 'fips_standalone_hmac', 'fitstopnm', 'fixdlsrps', 'fixfmps', 'fixmacps', 'fixproc', 'fixpsditps', 'fixpspps', 'fixscribeps', 'fixtpps', 'fixwfwps', 'fixwpps', 'fixwwps', 'fiz', 'flask-2.7', 'flex', 'flex++', 'flock', 'fmt', 'fmtutil', 'fmtutil-sys', 'fmtutil-user', 'fold', 'foomatic-rip', 'formail', 'fragiso', 'free', 'freetype-config', 'freshclam', 'fribidi', 'fsfs-access-map', 'fstopgm', 'ftp', 'ftp-rfc', 'funzip', 'funzip-plain', 'fuser', 'fusermount', 'g++', 'g++-7', 'g-ir-annotation-tool', 'g-ir-compiler', 'g-ir-doc-tool', 'g-ir-generate', 'g-ir-inspect', 'g-ir-scanner', 'g13', 'g2r', 'gapplication', 'gawk', 'gcc', 'gcc-7', 'gcc-ar', 'gcc-ar-7', 'gcc-nm', 'gcc-nm-7', 'gcc-ranlib', 'gcc-ranlib-7', 'gccmakedep', 'gconf-editor', 'gconf-merge-tree', 'gconftool-2', 'gconftool-rebuild', 'gcore', 'gcov', 'gcov-7', 'gcov-dump', 'gcov-dump-7', 'gcov-tool', 'gcov-tool-7', 'gd2copypal', 'gd2togif', 'gd2topng', 'gdb', 'gdb-add-index', 'gdbm_dump', 'gdbm_load', 'gdbmtool', 'gdbserver', 'gdbus', 'gdbus-codegen', 'gdcmpgif', 'gdialog', 'gdk-pixbuf-csource', 'gdk-pixbuf-pixdata', 'gdk-pixbuf-query-loaders-64', 'gdm', 'gdm-screenshot', 'gdmflexiserver', 'gdparttopng', 'gdtopng', 'gedi', 'gedit', 'gem', 'gem.ruby2.5', 'gem2rpm', 'gem2rpm-0.10.1', 'gem2rpm.ruby2.5', 'gem2rpm.ruby2.5-0.10.1', 'gemtopbm', 'gemtopnm', 'genDDNSkey', 'gencat', 'gendiff', 'genscript', 'geqn', 'get-versions', 'get_kernel_version', 'getafm', 'getcifsacl', 'getconf', 'getdelays', 'getent', 'getfacl', 'getfattr', 'gethostip', 'getkeycodes', 'getopt', 'gettext', 'gettext.sh', 'gettextize', 'getunimap', 'gex', 'gids-tool', 'giftogd2', 'giftopnm', 'gio', 'gio-querymodules-64', 'git', 'git-new-workdir', 'git-receive-pack', 'git-shell', 'git-upload-archive', 'git-upload-pack', 'git_version.tcl', 'gkbd-keyboard-display', 'glib-compile-resources', 'glib-compile-schemas', 'glib-genmarshal', 'glib-gettextize', 'glib-mkenums', 'gmake', 'gnome', 'gnome-control-center', 'gnome-help', 'gnome-keyring', 'gnome-keyring-3', 'gnome-keyring-daemon', 'gnome-open', 'gnome-session', 'gnome-session-inhibit', 'gnome-session-quit', 'gnome-shell', 'gnome-shell-extension-prefs', 'gnome-terminal', 'gnome-text-editor', 'gnomesu', 'gnomevfs-cat', 'gnomevfs-copy', 'gnomevfs-df', 'gnomevfs-info', 'gnomevfs-ls', 'gnomevfs-mkdir', 'gnomevfs-monitor', 'gnomevfs-mv', 'gnomevfs-rm', 'gnuctags', 'gnuplot', 'gnutls-cli', 'gnutls-cli-debug', 'gnutls-serv', 'gobject-query', 'gouldtoppm', 'gpasswd', 'gpg', 'gpg-agent', 'gpg-connect-agent', 'gpg-error', 'gpg-error-config', 'gpg-wks-server', 'gpg-zip', 'gpg2', 'gpgconf', 'gpgme-tool', 'gpgparsemail', 'gpgrt-config', 'gpgscm', 'gpgsm', 'gpgtar', 'gpgv', 'gpgv2', 'gpm-root', 'gprof', 'grep', 'grepjar', 'gresource', 'groff', 'grog', 'grops', 'grotty', 'groups', 'gs', 'gsbj', 'gsdj', 'gsdj500', 'gsettings', 'gsettings-data-convert', 'gsftopk', 'gslj', 'gslp', 'gsnd', 'gst-device-monitor-1.0', 'gst-discoverer-1.0', 'gst-play-1.0', 'gstack', 'gtbl', 'gtester', 'gtester-report', 'gtf', 'gtk-builder-convert', 'gtk-builder-tool', 'gtk-demo', 'gtk-encode-symbolic-svg', 'gtk-launch', 'gtk-query-immodules-2.0-64', 'gtk-query-immodules-3.0-64', 'gtk-query-settings', 'gtk-update-icon-cache', 'gtk-update-icon-cache-2.0', 'gtk-update-icon-cache-3.0', 'gtk3-demo', 'gtk3-demo-application', 'gtk3-icon-browser', 'gtk3-widget-factory', 'guess_encoding', 'guild', 'guile', 'guile-tools', 'gunicorn', 'gunicorn-2.7', 'gunicorn_paster', 'gunicorn_paster-2.7', 'gunzip', 'gv', 'gv-update-userconfig', 'gvfs-cat', 'gvfs-copy', 'gvfs-info', 'gvfs-less', 'gvfs-ls', 'gvfs-mime', 'gvfs-mkdir', 'gvfs-monitor-dir', 'gvfs-monitor-file', 'gvfs-mount', 'gvfs-move', 'gvfs-open', 'gvfs-rename', 'gvfs-rm', 'gvfs-save', 'gvfs-set-attribute', 'gvfs-trash', 'gvfs-tree', 'gvi', 'gview', 'gvim', 'gvimdiff', 'gvimtutor', 'gzexe', 'gzip', 'h2ph', 'h2xs', 'hardlink', 'hattrib', 'hcd', 'hcopy', 'hdel', 'hdifftopam', 'hdir', 'hdisk.pl', 'head', 'hexdump', 'hformat', 'hipstopgm', 'hls', 'hltest', 'hmac256', 'hmkdir', 'hmount', 'host', 'hostid', 'hostname', 'hostnamectl', 'hpwd', 'hrename', 'hrmdir', 'hugeadm', 'hugectl', 'hugeedit', 'humount', 'hunspell', 'hunzip', 'hvol', 'hwloc-annotate', 'hwloc-assembler', 'hwloc-assembler-remote', 'hwloc-bind', 'hwloc-calc', 'hwloc-compress-dir', 'hwloc-diff', 'hwloc-distances', 'hwloc-distrib', 'hwloc-gather-topology', 'hwloc-info', 'hwloc-ls', 'hwloc-patch', 'hwloc-ps', 'hzip', 'i386', 'iasecc-tool', 'iasl', 'ib_atomic_bw', 'ib_atomic_lat', 'ib_read_bw', 'ib_read_lat', 'ib_send_bw', 'ib_send_lat', 'ib_write_bw', 'ib_write_lat', 'ibdiagnet', 'ibdiagpath', 'ibdmchk', 'ibdmsh', 'ibdmtr', 'ibis', 'ibnlparse', 'ibtopodiff', 'iceauth', 'icesh', 'icesh-lite', 'icewm', 'icewm-lite', 'icewm-session', 'icewm-session-lite', 'icewmbg', 'icewmbg-lite', 'icewmhint', 'icewmhint-lite', 'icontopbm', 'iconv', 'icu-config', 'id', 'ident', 'idl2wrs', 'iecset', 'ifconfig', 'ifnames', 'ilbmtoppm', 'imake', 'imgtoppm', 'includeres', 'info', 'infocmp', 'infotocap', 'infotopam', 'initdb', 'initex', 'initviocons', 'install', 'install-catalog', 'install-catalog.sh', 'install-dtd.sh', 'install-info', 'installation_sources', 'installcheck', 'instmodsh', 'ionice', 'iostat', 'iowatcher', 'ipcmk', 'ipcount', 'ipcrm', 'ipcs', 'ipf-mod.pl', 'ipmitool', 'ippfind', 'ipptool', 'iptab', 'irb', 'irb.ruby2.5', 'isodebug', 'isodump', 'isohybrid', 'isohybrid.pl', 'isoinfo', 'isolinux-config', 'isosize', 'isovfy', 'ispellaff2myspell', 'isql', 'iusql', 'jar', 'jarsigner', 'java', 'javac', 'javadoc', 'javap', 'jbigtopnm', 'jcmd', 'jconsole', 'jdb', 'jdeprscan', 'jdeps', 'jhsdb', 'jimage', 'jinfo', 'jjs', 'jlink', 'jmap', 'jmod', 'join', 'journalctl', 'jpeg2ktopam', 'jpegtopnm', 'jps', 'jq', 'jrunscript', 'jshell', 'json_pp', 'jstack', 'jstat', 'jstatd', 'kbd', 'kbd_mode', 'kbdinfo', 'kbdrate', 'kbxutil', 'kdumpid', 'kernel-install', 'keyctl', 'keygen', 'keytab-lilo', 'keytool', 'kibitz', 'kill', 'killall', 'kinit', 'klist', 'kmod', 'kmp-install', 'koi8rxterm', 'kpseaccess', 'kpsepath', 'kpsereadlink', 'kpsestat', 'kpsetool', 'kpsewhere', 'kpsewhich', 'kpsexpand', 'ksh', 'lacheck', 'last', 'lastb', 'lastcomm', 'lastlog', 'latex', 'ld', 'ld.bfd', 'ldapadd', 'ldapcompare', 'ldapdelete', 'ldapexop', 'ldapmodify', 'ldapmodrdn', 'ldappasswd', 'ldapsearch', 'ldapurl', 'ldapwhoami', 'ldd', 'leaftoppm', 'less', 'lessclose.sh', 'lessecho', 'lesskey', 'lessopen.sh', 'lex', 'lexgrog', 'lfs', 'lfs_migrate', 'lftp', 'lftp_wrapper', 'lftpget', 'libgcrypt-config', 'libnetcfg', 'libpng-config', 'libpng16-config', 'libtool', 'libtoolize', 'linc-cleanup-sockets', 'line', 'link', 'linux32', 'linux64', 'lispmtopgm', 'lksh', 'ln', 'lndir', 'lnstat', 'loadkeys', 'loadmof.sh', 'loadunimap', 'locale', 'localectl', 'localedef', 'locate', 'lockfile', 'logger', 'loginctl', 'logname', 'lognormalizer', 'look', 'lp', 'lpoptions', 'lpq', 'lpr', 'lprm', 'lprsetup.sh', 'lpstat', 'lpunlock', 'ls', 'lsar', 'lsattr', 'lsb-release', 'lsb_release', 'lsblk', 'lscpu', 'lsdev', 'lsinitrd', 'lsipc', 'lslocks', 'lslogins', 'lsmem', 'lsmod', 'lsns', 'lsof', 'lss16toppm', 'lsscsi', 'lstopo', 'lstopo-no-graphics', 'lsusb', 'lsusb.py', 'ltrace', 'lua', 'lua5.3', 'luac', 'luac5.3', 'luajittex', 'lualatex', 'luaotfload-tool', 'luatex', 'luit', 'luitx', 'lwp-download', 'lwp-dump', 'lwp-mirror', 'lwp-request', 'lz', 'lz4', 'lz4c', 'lz4cat', 'lzcat', 'lzcmp', 'lzdiff', 'lzegrep', 'lzfgrep', 'lzgrep', 'lzless', 'lzma', 'lzmadec', 'lzmainfo', 'lzmore', 'm17n-db', 'm4', 'mac2unix', 'macptopbm', 'mail', 'mailq', 'mailstat', 'mailx', 'make', 'make_method', 'makealias', 'makedeltaiso', 'makedeltarpm', 'makedepend', 'makedumpfile', 'makedumpfile-R.pl', 'makeg', 'makeindex', 'makeinfo', 'man', 'mandb', 'manpath', 'manweb', 'mapscrn', 'mariadb_config', 'mattrib', 'mbadblocks', 'mcat', 'mcd', 'mcheck', 'mclasserase', 'mcomp', 'mcookie', 'mcopy', 'md5pass', 'md5sum', 'mdatopbm', 'mdel', 'mdeltree', 'mdig', 'mdir', 'mdu', 'memdiskfind', 'memhog', 'memkind-hbw-nodes', 'merge', 'merge-pciids', 'mergecap', 'mergelib', 'mergerepo', 'mergerepo_c', 'mergesolv', 'mesg', 'mev', 'mformat', 'mgrtopbm', 'migratepages', 'migspeed', 'minfo', 'mk_cmds', 'mkafmmap', 'mkdir', 'mkdirhier', 'mkdiskimage', 'mkfifo', 'mkfontdir', 'mkfontscale', 'mkhtmlindex', 'mkhybrid', 'mkindex', 'mkinfodir', 'mkisofs', 'mkmanifest', 'mknod', 'mkocp', 'mkofm', 'mkpasswd', 'mksh', 'mksquashfs', 'mktemp', 'mktexfmt', 'mktexlsr', 'mktexmf', 'mktexpk', 'mktextfm', 'mkzftree', 'mkzimage_cmdline', 'mlabel', 'mmd', 'mmdbresolve', 'mmount', 'mmove', 'mmroff', 'modhash', 'modifyrepo', 'modifyrepo_c', 'modsign-verify', 'mof_compiler', 'mof_compiler-2.7', 'mof_compiler-3.6', 'more', 'mount', 'mountpoint', 'mouse-test', 'mpartition', 'mpi-selector', 'mpi-selector-menu', 'mpicalc', 'mpstat', 'mrd', 'mren', 'mrftopbm', 'ms_print', 'msgattrib', 'msgcat', 'msgcmp', 'msgcomm', 'msgconv', 'msgen', 'msgexec', 'msgfilter', 'msgfmt', 'msggrep', 'msginit', 'msgmerge', 'msgunfmt', 'msguniq', 'mshortname', 'mshowfat', 'mstconfig', 'mstflint', 'mstfwreset', 'mstmcra', 'mstmread', 'mstmtserver', 'mstmwrite', 'mstregdump', 'mstvpd', 'mtools', 'mtoolstest', 'mtvtoppm', 'mtype', 'multixterm', 'munch', 'munge', 'mutt', 'mutter', 'mv', 'mvxattr', 'mxtar', 'mydvichk', 'myquota', 'mysql', 'mysql_config', 'mysqladmin', 'mysqlcheck', 'mysqld_safe_helper', 'mysqldump', 'mysqlimport', 'mysqlshow', 'mzip', 'namei', 'nc', 'ncurses6-config', 'ncursesw6-config', 'neotoppm', 'neqn', 'net', 'net-server', 'net-snmp-cert', 'net-snmp-config', 'net-snmp-create-v3-user', 'netaddr-2.7', 'netcat', 'netkey-tool', 'netstat', 'newaliases', 'newgidmap', 'newgrp', 'newuidmap', 'ngettext', 'nice', 'nisdomainname', 'nl', 'nm', 'nmap', 'nmblookup', 'nmbstatus', 'nohup', 'notify-send', 'npa-tool', 'nproc', 'nroff', 'nsenter', 'nslookup', 'nstat', 'nsupdate', 'ntlm_auth', 'numactl', 'numademo', 'numastat', 'numfmt', 'nvidia-bug-report.sh', 'nvidia-cuda-mps-control', 'nvidia-cuda-mps-server', 'nvidia-debugdump', 'nvidia-persistenced', 'nvidia-settings', 'nvidia-smi', 'nvidia-xconfig', 'oLschema2ldif', 'objcopy', 'objdump', 'oci-image-tool', 'ocount', 'ocsptool', 'od', 'odbc_config', 'odbcinst', 'odd2even', 'ofl', 'oid2name', 'old', 'op-check-perfevents', 'opannotate', 'oparchive', 'openpgp-tool', 'opensc-asn1', 'opensc-explorer', 'opensc-notify', 'opensc-tool', 'openssl', 'openvt', 'operf', 'opgprof', 'ophelp', 'opimport', 'opjitconv', 'opreport', 'oprofile_map_events.pl', 'oprofile_start.sh', 'outpsfheader', 'over', 'p11-kit', 'p11tool', 'pack200', 'pagesize', 'palmtopnm', 'pamaddnoise', 'pamarith', 'pambackground', 'pambayer', 'pamchannel', 'pamcomp', 'pamcrater', 'pamcut', 'pamdeinterlace', 'pamdepth', 'pamdice', 'pamditherbw', 'pamedge', 'pamendian', 'pamenlarge', 'pamexec', 'pamfile', 'pamfix', 'pamfixtrunc', 'pamflip', 'pamfunc', 'pamgauss', 'pamgradient', 'pamlookup', 'pammasksharpen', 'pammixinterlace', 'pammosaicknit', 'pamoil', 'pampaintspill', 'pamperspective', 'pampick', 'pampop9', 'pamrecolor', 'pamrgbatopng', 'pamrubber', 'pamscale', 'pamseq', 'pamshadedrelief', 'pamsharpmap', 'pamsharpness', 'pamsistoaglyph', 'pamslice', 'pamsplit', 'pamstack', 'pamstereogram', 'pamstretch', 'pamstretch-gen', 'pamsumm', 'pamsummcol', 'pamtable', 'pamthreshold', 'pamtilt', 'pamtoavs', 'pamtodjvurle', 'pamtofits', 'pamtogif', 'pamtohdiff', 'pamtohtmltbl', 'pamtojpeg2k', 'pamtompfont', 'pamtooctaveimg', 'pamtopam', 'pamtopdbimg', 'pamtopfm', 'pamtopng', 'pamtopnm', 'pamtosrf', 'pamtosvg', 'pamtotga', 'pamtotiff', 'pamtouil', 'pamtowinicon', 'pamtoxvmini', 'pamundice', 'pamunlookup', 'pamvalidate', 'pamwipeout', 'pamx', 'parse-sgml-catalog.sh', 'passmass', 'passwd', 'paste', 'patch', 'pathchk', 'pax', 'pbmclean', 'pbmlife', 'pbmmake', 'pbmmask', 'pbmminkowski', 'pbmpage', 'pbmpscale', 'pbmreduce', 'pbmtext', 'pbmtextps', 'pbmto10x', 'pbmto4425', 'pbmtoascii', 'pbmtoatk', 'pbmtobbnbg', 'pbmtocis', 'pbmtocmuwm', 'pbmtodjvurle', 'pbmtoepsi', 'pbmtoepson', 'pbmtoescp2', 'pbmtog3', 'pbmtogem', 'pbmtogo', 'pbmtoibm23xx', 'pbmtoicon', 'pbmtolj', 'pbmtoln03', 'pbmtolps', 'pbmtomacp', 'pbmtomatrixorbital', 'pbmtomda', 'pbmtomgr', 'pbmtomrf', 'pbmtonokia', 'pbmtopgm', 'pbmtopi3', 'pbmtopk', 'pbmtoplot', 'pbmtoppa', 'pbmtopsg3', 'pbmtoptx', 'pbmtosunicon', 'pbmtowbmp', 'pbmtox10bm', 'pbmtoxbm', 'pbmtoybm', 'pbmtozinc', 'pbmupc', 'pc1toppm', 'pcre-config', 'pcre2-config', 'pcregrep', 'pcretest', 'pcxtoppm', 'pdbedit', 'pdbimgtopam', 'pdf2dsc', 'pdf2ps', 'pdfdetach', 'pdfetex', 'pdffonts', 'pdfimages', 'pdfinfo', 'pdflatex', 'pdfseparate', 'pdfsig', 'pdftex', 'pdftexi2dvi', 'pdftocairo', 'pdftohtml', 'pdftoppm', 'pdftops', 'pdftotext', 'pdfunite', 'pdksh', 'peekfd', 'perf', 'perl', 'perl5.26.1', 'perlbug', 'perldoc', 'perlivp', 'perlthanks', 'pf2afm', 'pfbtopfa', 'pfmtopam', 'pg_archivecleanup', 'pg_basebackup', 'pg_config', 'pg_controldata', 'pg_ctl', 'pg_dump', 'pg_dumpall', 'pg_isready', 'pg_receivewal', 'pg_recvlogical', 'pg_resetwal', 'pg_restore', 'pg_rewind', 'pg_standby', 'pg_test_fsync', 'pg_test_timing', 'pg_upgrade', 'pg_waldump', 'pgbench', 'pgmabel', 'pgmbentley', 'pgmcrater', 'pgmdeshadow', 'pgmedge', 'pgmenhance', 'pgmhist', 'pgmkernel', 'pgmmake', 'pgmmedian', 'pgmminkowski', 'pgmmorphconv', 'pgmnoise', 'pgmnorm', 'pgmoil', 'pgmramp', 'pgmslice', 'pgmtexture', 'pgmtofs', 'pgmtolispm', 'pgmtopbm', 'pgmtopgm', 'pgmtoppm', 'pgmtosbig', 'pgmtost4', 'pgpewrap', 'pgpring', 'pgrep', 'pi1toppm', 'pi3topbm', 'pic', 'piconv', 'pidstat', 'pigz', 'pinentry', 'pinentry-curses', 'pinentry-tty', 'ping', 'ping6', 'pinky', 'piv-tool', 'pjtoppm', 'pkaction', 'pkcheck', 'pkcs11-tool', 'pkcs11_eventmgr', 'pkcs11_inspect', 'pkcs11_listcerts', 'pkcs11_make_hash_link', 'pkcs11_setup', 'pkcs15-crypt', 'pkcs15-init', 'pkcs15-tool', 'pkexec', 'pkg-config', 'pki', 'pkill', 'pklogin_finder', 'pktopbm', 'pkttyagent', 'pl2pm', 'pmap', 'pngtogd', 'pngtogd2', 'pngtopam', 'pngtopnm', 'pnmalias', 'pnmarith', 'pnmcat', 'pnmcolormap', 'pnmcomp', 'pnmconvol', 'pnmcrop', 'pnmcut', 'pnmdepth', 'pnmenlarge', 'pnmfile', 'pnmflip', 'pnmgamma', 'pnmhisteq', 'pnmhistmap', 'pnmindex', 'pnminterp', 'pnminvert', 'pnmmargin', 'pnmmercator', 'pnmmontage', 'pnmnlfilt', 'pnmnoraw', 'pnmnorm', 'pnmpad', 'pnmpaste', 'pnmpsnr', 'pnmquant', 'pnmquantall', 'pnmremap', 'pnmrotate', 'pnmscale', 'pnmscalefixed', 'pnmshear', 'pnmsmooth', 'pnmsplit', 'pnmstitch', 'pnmtile', 'pnmtoddif', 'pnmtofiasco', 'pnmtofits', 'pnmtojbig', 'pnmtojpeg', 'pnmtopalm', 'pnmtopclxl', 'pnmtoplainpnm', 'pnmtopng', 'pnmtopnm', 'pnmtops', 'pnmtorast', 'pnmtorle', 'pnmtosgi', 'pnmtosir', 'pnmtotiff', 'pnmtotiffcmyk', 'pnmtoxwd', 'pod2html', 'pod2man', 'pod2texi', 'pod2text', 'pod2usage', 'pod_cover', 'podchecker', 'podselect', 'postgres', 'postmaster', 'pphs', 'ppm3d', 'ppmbrighten', 'ppmchange', 'ppmcie', 'ppmcolormask', 'ppmcolors', 'ppmdcfont', 'ppmddumpfont', 'ppmdim', 'ppmdist', 'ppmdither', 'ppmdmkfont', 'ppmdraw', 'ppmfade', 'ppmflash', 'ppmforge', 'ppmglobe', 'ppmhist', 'ppmlabel', 'ppmmake', 'ppmmix', 'ppmnorm', 'ppmntsc', 'ppmpat', 'ppmquant', 'ppmquantall', 'ppmrainbow', 'ppmrelief', 'ppmrough', 'ppmshadow', 'ppmshift', 'ppmspread', 'ppmtoacad', 'ppmtoapplevol', 'ppmtoarbtxt', 'ppmtoascii', 'ppmtobmp', 'ppmtoeyuv', 'ppmtogif', 'ppmtoicr', 'ppmtoilbm', 'ppmtojpeg', 'ppmtoleaf', 'ppmtolj', 'ppmtolss16', 'ppmtomap', 'ppmtomitsu', 'ppmtoneo', 'ppmtopcx', 'ppmtopgm', 'ppmtopi1', 'ppmtopict', 'ppmtopj', 'ppmtopjxl', 'ppmtoppm', 'ppmtopuzz', 'ppmtorgb3', 'ppmtosixel', 'ppmtospu', 'ppmtoterm', 'ppmtotga', 'ppmtouil', 'ppmtowinicon', 'ppmtoxpm', 'ppmtoyuv', 'ppmtoyuvsplit', 'ppmtv', 'ppmwheel', 'pr', 'pr3287', 'prctl', 'preconv', 'printafm', 'printenv', 'printf', 'prjaquota', 'prjquota', 'prlimit', 'procinfo', 'procmail', 'profiles', 'protoc', 'prove', 'prtstat', 'ps', 'ps2ascii', 'ps2eps', 'ps2epsi', 'ps2frag', 'ps2pdf', 'ps2pdf12', 'ps2pdf13', 'ps2pdf14', 'ps2pdfwr', 'ps2ps', 'ps2ps2', 'psbook', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'psidtopgm', 'psktool', 'pslatex', 'pslog', 'psmerge', 'psnup', 'psql', 'psresize', 'psselect', 'pstops', 'pstree', 'pstree.x11', 'pt-tls-client', 'ptar', 'ptardiff', 'ptargrep', 'ptked', 'ptksh', 'ptx', 'purge', 'pwd', 'pwdx', 'pxelinux-options', 'pybabel', 'pybabel-2.7', 'pydoc', 'pydoc3', 'pydoc3.6', 'python', 'python-config', 'python2', 'python2-config', 'python2.7', 'python2.7-config', 'python3', 'python3.6', 'python3.6m', 'pyvenv', 'pyvenv-3.6', 'pywbemcli', 'pywbemcli-2.7', 'pywbemcli-3.6', 'qperf', 'qrttoppm', 'quota', 'quotasync', 'rake', 'rake.ruby.ruby2.5', 'rake.ruby2.5', 'randpkt', 'ranlib', 'rasttopnm', 'raw_ethernet_burst_lat', 'raw_ethernet_bw', 'raw_ethernet_fs_rate', 'raw_ethernet_lat', 'rawshark', 'rawtopgm', 'rawtoppm', 'rbash', 'rcs', 'rcs2log', 'rcsclean', 'rcsdiff', 'rcsmerge', 'rdoc', 'rdoc.ruby.ruby2.5', 'rdoc.ruby2.5', 'rds-info', 'rds-ping', 'rds-stress', 're2c', 'readelf', 'readlink', 'realpath', 'rebuild-jar-repository', 'recode-sr-latin', 'red', 'regdiff', 'regpatch', 'regshell', 'regtree', 'reindexdb', 'remunge', 'rename', 'renice', 'reordercap', 'repo2solv', 'repo2solv.sh', 'repomdxml2solv', 'rescan-scsi-bus.sh', 'reset', 'resize', 'resizecons', 'rev', 'revpath', 'rftp', 'rgb3toppm', 'rgview', 'rgvim', 'ri', 'ri.ruby.ruby2.5', 'ri.ruby2.5', 'rlatopam', 'rletopnm', 'rlog', 'rlogin-cwd', 'rm', 'rmdir', 'rmic', 'rmid', 'rmiregistry', 'rmmof.sh', 'route', 'routef', 'routel', 'rpcclient', 'rpcgen', 'rpm', 'rpm2cpio', 'rpmbuild', 'rpmdb', 'rpmdb2solv', 'rpmgraph', 'rpmkeys', 'rpmlocate', 'rpmmd2solv', 'rpmqpack', 'rpmquery', 'rpms2solv', 'rpmsign', 'rpmspec', 'rpmverify', 'rrdcgi', 'rrdcreate', 'rrdinfo', 'rrdtool', 'rrdupdate', 'rsync', 'rsyncstats', 'ruby', 'ruby-find-versioned', 'ruby.ruby2.5', 'run_perftest_loopback', 'run_perftest_multi_devices', 'runcon', 'rview', 'rvim', 's3270', 'sa-awl', 'sa-check_spamd', 'sa-compile', 'sa-learn', 'sa-update', 'sacct', 'sacctmgr', 'sadf', 'safe-rm', 'safe-rmdir', 'salloc', 'samba-regedit', 'sandbox', 'sar', 'sattach', 'sbatch', 'sbcast', 'sbigtopgm', 'sc-hsm-tool', 'scancel', 'scdaemon', 'scons', 'scons-2.3.0', 'scons-time', 'scons-time-2.3.0', 'sconsign', 'sconsign-2.3.0', 'scontrol', 'scout', 'scp', 'screen', 'screendump', 'script', 'scriptreplay', 'scsi_logging_level', 'scsi_mandat', 'scsi_readcap', 'scsi_ready', 'scsi_satl', 'scsi_start', 'scsi_stop', 'scsi_temperature', 'sdiag', 'sdiff', 'secon', 'sed', 'sedismod', 'sedispol', 'semodule_deps', 'semodule_expand', 'semodule_link', 'semodule_package', 'semodule_unpackage', 'sensors', 'sensors-conf-convert', 'sepolgen-ifgen', 'sepolgen-ifgen-attr-helper', 'sepolicy', 'seq', 'serialver', 'sessreg', 'set_default_volume', 'setarch', 'setcifsacl', 'setfacl', 'setfattr', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setpriv', 'setserial', 'setsid', 'setterm', 'setvesablank', 'setvtrgb', 'setxkbmap', 'sfcbdump', 'sfcbinst2mof', 'sfcbmof', 'sfcbmofpp', 'sfcbproc', 'sfcbrepos', 'sfcbstage', 'sfcbtrace', 'sfcbunstage', 'sfcbuuid', 'sftp', 'sg', 'sg_bg_ctl', 'sg_compare_and_write', 'sg_copy_results', 'sg_dd', 'sg_decode_sense', 'sg_emc_trespass', 'sg_format', 'sg_get_config', 'sg_get_lba_status', 'sg_ident', 'sg_inq', 'sg_logs', 'sg_luns', 'sg_map', 'sg_map26', 'sg_modes', 'sg_opcodes', 'sg_persist', 'sg_prevent', 'sg_raw', 'sg_rbuf', 'sg_rdac', 'sg_read', 'sg_read_attr', 'sg_read_block_limits', 'sg_read_buffer', 'sg_read_long', 'sg_readcap', 'sg_reassign', 'sg_referrals', 'sg_rep_zones', 'sg_requests', 'sg_reset', 'sg_reset_wp', 'sg_rmsn', 'sg_rtpg', 'sg_safte', 'sg_sanitize', 'sg_sat_identify', 'sg_sat_phy_event', 'sg_sat_read_gplog', 'sg_sat_set_features', 'sg_scan', 'sg_seek', 'sg_senddiag', 'sg_ses', 'sg_ses_microcode', 'sg_start', 'sg_stpg', 'sg_stream_ctl', 'sg_sync', 'sg_test_rwbuf', 'sg_timestamp', 'sg_turs', 'sg_unmap', 'sg_verify', 'sg_vpd', 'sg_wr_mode', 'sg_write_buffer', 'sg_write_long', 'sg_write_same', 'sg_write_verify', 'sg_write_x', 'sg_xcopy', 'sg_zone', 'sgather', 'sginfo', 'sgitopnm', 'sgm_dd', 'sgml-register-catalog', 'sgml2xmlcat.sh', 'sgmlcat2x.sh', 'sgp_dd', 'sh', 'sha1pass', 'sha1sum', 'sha224sum', 'sha256sum', 'sha384sum', 'sha512sum', 'shade-jar', 'shar', 'sharesec', 'sharkd', 'shasum', 'shifter', 'shifterimg', 'showchar', 'showconsolefont', 'showkey', 'showrgb', 'shred', 'shuf', 'sigtool', 'simpdftex', 'sinfo', 'sirtopnm', 'size', 'skill', 'skopeo', 'slabtop', 'sldtoppm', 'sleep', 'slencheck', 'sliceprint', 'slptool', 'smbcacls', 'smbclient', 'smbcontrol', 'smbcquotas', 'smbget', 'smbinfo', 'smbpasswd', 'smbprngenpdf', 'smbspool', 'smbtar', 'smbtree', 'smicache', 'smidiff', 'smidump', 'smilint', 'smime_keys', 'smiquery', 'smistrip', 'smixlate', 'smtpd.py', 'snice', 'snmp-bridge-mib', 'snmpbulkget', 'snmpbulkwalk', 'snmpcheck', 'snmpconf', 'snmpdelta', 'snmpdf', 'snmpget', 'snmpgetnext', 'snmpinform', 'snmpkey', 'snmpnetstat', 'snmpset', 'snmpstatus', 'snmptable', 'snmptest', 'snmptls', 'snmptranslate', 'snmptrap', 'snmpusm', 'snmpvacm', 'snmpwalk', 'socklist', 'soelim', 'sort', 'spamassassin', 'spamc', 'spawn_console', 'spawn_login', 'spax', 'spctoppm', 'speaker-test', 'splain', 'split', 'spottopgm', 'sprio', 'sprof', 'sputoppm', 'sqlite3', 'sqlite3_analyzer', 'sqliterepo', 'sqliterepo_c', 'squeue', 'squidclient', 'sreport', 'srftopam', 'srptool', 'srun', 'ss', 'ssh', 'ssh-add', 'ssh-agent', 'ssh-copy-id', 'ssh-keygen', 'ssh-keyscan', 'sshare', 'sss_ssh_authorizedkeys', 'sss_ssh_knownhostsproxy', 'sstat', 'st4topgm', 'stap', 'stap-merge', 'stap-report', 'stapbpf', 'staprun', 'stapsh', 'star', 'startx', 'stat', 'states', 'stdbuf', 'stdlogctl', 'strace', 'strace-graph', 'strace-log-merge', 'strigger', 'strings', 'strip', 'stty', 'su', 'sum', 'sunicontopnm', 'suse-update-mime-defaults', 'susetags2solv', 'svgtopam', 'sview', 'svn', 'svn-bench', 'svn-populate-node-origins-index', 'svn_apply_autoprops.py', 'svnadmin', 'svnauthz', 'svnauthz-validate', 'svnbench', 'svndiff', 'svndumpfilter', 'svnfsfs', 'svngrep', 'svnlook', 'svnmucc', 'svnraisetreeconflict', 'svnrdump', 'svnserve', 'svnsync', 'svnversion', 'sync', 'syslinux', 'syslinux-mtools', 'syslinux2ansi', 'systemctl', 'systemd-analyze', 'systemd-ask-password', 'systemd-cat', 'systemd-cgls', 'systemd-cgtop', 'systemd-delta', 'systemd-detect-virt', 'systemd-escape', 'systemd-firstboot', 'systemd-hwdb', 'systemd-inhibit', 'systemd-machine-id-setup', 'systemd-mount', 'systemd-notify', 'systemd-path', 'systemd-run', 'systemd-socket-activate', 'systemd-stdio-bridge', 'systemd-sysusers', 'systemd-tmpfiles', 'systemd-tty-ask-password-agent', 'systemd-umount', 'systool', 'tabs', 'tac', 'tack', 'tail', 'tapestat', 'tar', 'targetcli', 'targetcli-3.6', 'targetctl', 'targetctl-3.6', 'tartest', 'taskset', 'tbl', 'tcl3270', 'tclsh', 'tclsh8.6', 'tcsh', 'tee', 'telnet', 'termprobes', 'test', 'test_igmpv3_join', 'testparm', 'testsaslauthd', 'testsolv', 'tethereal', 'tex', 'texconfig', 'texconfig-dialog', 'texconfig-sys', 'texhash', 'texi2any', 'texi2dvi', 'texi2pdf', 'texindex', 'texlinks', 'texlua', 'texluac', 'texluajit', 'texluajitc', 'text2pcap', 'tftp', 'tgatoppm', 'tgz', 'thinkjettopbm', 'thumbpdf', 'tic', 'tidy_changelog', 'tifftopnm', 'time', 'timed-read', 'timed-run', 'timedatectl', 'timeout', 'tkcon', 'tkjpeg', 'tkmib', 'tknewsbiff', 'tload', 'toe', 'top', 'touch', 'tpm_sealdata', 'tpm_unsealdata', 'tput', 'tr', 'trace', 'tracepath', 'tracepath6', 'traptoemail', 'tree', 'troff', 'true', 'truncate', 'trust', 'tset', 'tshark', 'tsort', 'tty', 'turbostat', 'tzselect', 'ucs2any', 'udevadm', 'uil', 'ul', 'ulockmgr_server', 'umoci', 'umount', 'uname', 'uname26', 'unar', 'unbuffer', 'uncompress', 'unexpand', 'unicode_start', 'unicode_stop', 'uniq', 'unix-lpr.sh', 'unix2dos', 'unix2mac', 'unlink', 'unlz4', 'unlzma', 'unmunch', 'unmunge', 'unpack200', 'unpigz', 'unrar', 'unrar_wrapper', 'unshar', 'unshare', 'unsquashfs', 'unxz', 'unzip', 'unzip-plain', 'unzipsfx', 'unzipsfx-plain', 'update-desktop-database', 'update-mime-database', 'update-xml-catalog', 'updatedb', 'updateinfoxml2solv', 'updmap', 'updmap-sys', 'updmap-user', 'uptime', 'urlgrabber', 'usb-devices', 'usbhid-dump', 'users', 'ustar', 'utmpdump', 'uudecode', 'uuencode', 'uuidgen', 'uuidparse', 'uxterm', 'uz', 'vacuumdb', 'vacuumlo', 'valgrind', 'valgrind-di-server', 'valgrind-listener', 'vdir', 'vdltodmx', 'verify_blkparse', 'vgdb', 'vi', 'view', 'vim', 'vim-nox11', 'vimdiff', 'vimtutor', 'vitmp', 'vlock', 'vmstat', 'vncconfig', 'vncpasswd', 'vncpasswd.arg', 'vncserver', 'vttest', 'vtysh', 'w', 'w3m', 'w3mman', 'wall', 'watch', 'watchgnupg', 'wayland-scanner', 'wbemai', 'wbemain', 'wbemcat', 'wbemci', 'wbemcli', 'wbemcli.py', 'wbemcli.py-2.7', 'wbemcli.py-3.6', 'wbemcm', 'wbemcmx', 'wbemdc', 'wbemdi', 'wbemec', 'wbemecn', 'wbemei', 'wbemein', 'wbemgc', 'wbemgcd', 'wbemgi', 'wbemgp', 'wbemmi', 'wbemri', 'wbemrin', 'wbemsp', 'wbinfo', 'wbmptopbm', 'wc', 'wdctl', 'webpng', 'westcos-tool', 'wget', 'whatis', 'whereis', 'which', 'who', 'whoami', 'whois', 'widget', 'winicontopam', 'winicontoppm', 'wish', 'wish8.6', 'wmidump', 'wmixtract', 'wordforms', 'wordlist2hunspell', 'write', 'x026', 'x0vncserver', 'x3270', 'x3270if', 'x86_64', 'x86_64-suse-linux-gnu-pkg-config', 'x86_energy_perf_policy', 'xargs', 'xauth', 'xbmtopbm', 'xconsole', 'xdg-desktop-icon', 'xdg-desktop-menu', 'xdg-email', 'xdg-icon-resource', 'xdg-mime', 'xdg-open', 'xdg-screensaver', 'xdg-settings', 'xdg-su', 'xdg-terminal', 'xdg_menu', 'xdg_menu_su', 'xdm', 'xdmxconfig', 'xf86debug', 'xgettext', 'xhost', 'xid_logger.sh', 'ximtoppm', 'xinit', 'xkbcomp', 'xkibitz', 'xli', 'xlito', 'xloadimage', 'xmessage', 'xmkmf', 'xml2-config', 'xml_grep', 'xml_merge', 'xml_pp', 'xml_spellcheck', 'xml_split', 'xmlcatalog', 'xmllint', 'xmltest', 'xmlwf', 'xmodmap', 'xorg-backtrace', 'xpath', 'xpmtoppm', 'xprop', 'xpstat', 'xrdb', 'xscreensaver', 'xscreensaver-command', 'xscreensaver-demo', 'xscreensaver-gl-helper', 'xset', 'xsetbg', 'xsetroot', 'xslt-config', 'xsltproc', 'xsubpp', 'xterm', 'xtermset', 'xview', 'xvminitoppm', 'xwdtopnm', 'xxd', 'xz', 'xzcat', 'xzcmp', 'xzdec', 'xzdiff', 'xzegrep', 'xzfgrep', 'xzgrep', 'xzless', 'xzmore', 'xznew', 'yacc', 'yat2m', 'ybmtopbm', 'yelp', 'yes', 'ypcat', 'ypchfn', 'ypchsh', 'ypdomainname', 'ypmatch', 'yppasswd', 'ypwhich', 'yuvsplittoppm', 'yuvtoppm', 'yuy2topam', 'yzpper', 'zcat', 'zcmp', 'zdiff', 'zegrep', 'zeisstopnm', 'zenity', 'zfgrep', 'zforce', 'zgrep', 'zip', 'zipcloak', 'zipdetails', 'zipgrep', 'zipgrep-plain', 'zipinfo', 'zipnote', 'zipsplit', 'zless', 'zmore', 'znew', 'zoo', 'zsh', 'zypp-CheckAccessDeleted', 'zypp-NameReqPrv', 'zypper'] ['arch', 'awk', 'basename', 'bash', 'blkparse', 'blktrace', 'btrace', 'cat', 'chgrp', 'chmod', 'chown', 'chvt', 'clrunimap', 'cp', 'cpio', 'csh', 'date', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-monitor', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dd', 'dd_rescue', 'deallocvt', 'df', 'dmesg', 'dnsdomainname', 'domainname', 'dumpkeys', 'echo', 'ed', 'egrep', 'ex', 'false', 'fgconsole', 'fgrep', 'fillup', 'find', 'findmnt', 'fsync', 'fuser', 'gawk', 'getkeycodes', 'getunimap', 'grep', 'guess_encoding', 'gunzip', 'gzip', 'hostname', 'ifconfig', 'initviocons', 'ip', 'kbd_mode', 'kbdinfo', 'kbdrate', 'keyctl', 'kill', 'ksh', 'lksh', 'ln', 'loadkeys', 'loadunimap', 'logger', 'login', 'ls', 'lsblk', 'lsmod', 'mail', 'mapscrn', 'md5sum', 'mkdir', 'mknod', 'mksh', 'mktemp', 'more', 'mount', 'mv', 'netstat', 'nisdomainname', 'openvt', 'outpsfheader', 'pdksh', 'pgrep', 'pidof', 'ping', 'ping6', 'pkill', 'ps', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'pwd', 'readlink', 'resizecons', 'rm', 'rmdir', 'route', 'rpm', 'screendump', 'sed', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setvesablank', 'setvtrgb', 'sh', 'showconsolefont', 'showkey', 'sleep', 'sort', 'spawn_console', 'spawn_login', 'stat', 'stty', 'su', 'sync', 'systemctl', 'systemd', 'systemd-ask-password', 'tar', 'tcsh', 'touch', 'tracepath', 'tracepath6', 'true', 'umount', 'uname', 'unicode_start', 'unicode_stop', 'usleep', 'vi', 'vim', 'ypdomainname', 'zcat', 'zsh'] ['gss-client', 'k5srvutil', 'kadmin', 'kdestroy', 'kinit', 'klist', 'kpasswd', 'krb5-config', 'ksu', 'kswitch', 'ktutil', 'kvno', 'sclient', 'sim_client', 'uuclient'] ['krb5-send-pr'] ['csmlversion', 'pe_cleanup_callback.sh', 'pe_postmount_callback.sh', 'pe_setup_callback.sh', 'set-gcc-libs', 'set_default', 'setup_shell_rcs.sh'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/bib2html...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/bib2html...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/bib2html...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/bib2html...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/bib2html...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/bib2html...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/bib2html...not found Checking for program /opt/cray/alps/default/bin/bib2html...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/bib2html...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/bib2html...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/bib2html...not found Checking for program /global/common/cori/software/altd/2.0/bin/bib2html...not found Checking for program /usr/common/software/bin/bib2html...not found Checking for program /usr/common/mss/bin/bib2html...not found Checking for program /usr/common/nsg/bin/bib2html...not found Checking for program /opt/ovis/bin/bib2html...not found Checking for program /opt/ovis/sbin/bib2html...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/lib/mit/bin/bib2html...not found Checking for program /usr/lib/mit/sbin/bib2html...not found Checking for program /opt/cray/pe/bin/bib2html...not found Checking for program /global/homes/m/madams/petsc_install/petsc/lib/petsc/bin/win32fe/bib2html...not found Unable to find programs ['bib2html'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['ddt-mpirun', 'forge', 'ddt', 'perf-report', 'forge-probe', 'map', 'forge-client', 'allinea-client', 'make-profiler-libraries', 'forge-mpirun', 'ddt-client'] ['qmlmin', 'iptest3', 'dask-mpi', 'sdbadmin', 'gss-client', 'cs2cs', 'ristosds', 'fc-scan', 'jupyter-kernel', 'navigator-updater', 'curl-config', 'bzgrep', 'xsltproc', 'jupyter-serverextension', 'lz4', 'runxlrd.py', 'pydoc', 'elbadmin', 'perror', 'dask-remote', 'geos-config', 'fitsheader', 'h5import', 'f2py', 'gif2hdf', 'fc-validate', 'glib-gettextize', 'pycc', 'pal2rgb', 'sqlite3_analyzer', 'sphinx-apidoc', 'uic', 'rst2html5.py', 'lzma', 'xzcmp', 'route53', 'tput', 'gst-discoverer-1.0', 'ncinfo', 'gsettings', 'sip', 'pip', 'hdftopal', 'pydoc3', 'h5mkgrp', 'gio', 'xmlwf', 'pyvenv-3.7', 'bsdtar', 'ncgen', 'tiffcmp', 'icuinfo', 'gencnval', 'pandoc', 'cph', 'ipython', 'xzgrep', 'pyvenv', 'pngfix', 'qmlimportscanner', 'rst2s5.py', 'h5redeploy', 'instance_events', 'ipcluster', 'qdoc', 'qtplugininfo', 'hdfed', 'jupyter-nbconvert', 'makeconv', 'tiffmedian', 'h5debug', 'qhelpgenerator', 'conda-inspect', 'gobject-query', 'conda-build', 'volint', 'toe', 'xml2-config', 'c_rehash', 'protoc', 'pep8', 'qcollectiongenerator', 'nc-config', 'fitsinfo', 'flask', 'hb-view', 'tic', 'kvno', 'lzcat', 'gdbus-codegen', 'conda-env', 'gst-inspect-1.0', 'dbus-send', 'h5c++', 'h5repack', 'wish', 'curve_keygen', 'pytest', 'tiffset', 'xzmore', 'xz', 'pyjson5', 'unlzma', 'unzstd', 'djpeg', 'glib-mkenums', 'fetch_file', 'gunicorn', 'asadmin', 'designer', 'qdbus', 'bokeh', 'dbus-uuidgen', 'sphinx-quickstart', 'infocmp', 'icu-config', 'ipengine', 'jpegtran', 'tiff2pdf', 'rst2html4.py', 'jupyter-bundlerextension', 'gst-typefind-1.0', 'h5cc', 'genbrk', 'klist', 'samp_hub', 'jpeg2hdf', 'pyflakes', 'launch_instance', 'h5stat', 's3put', 'bzfgrep', 'fc-cat', 'h5ls', 'qdbusviewer', 'cairo-trace', 'nad2bin', 'patchelf', 'lzegrep', 'jupyter-labextension', 'rst2pseudoxml.py', 'pandoc-citeproc', 'tiff2rgba', 'pcretest', 'h5copy', 'bzdiff', 'ptrepack', 'mturk', 'lzcmp', 'glib-genmarshal', 'pygmentize', 'fixqt4headers.pl', 'lzmainfo', 'bzless', 'assistant', 'qmllint', 'lss3', 'bzip2recover', 'f2py3.7', 'qmlprofiler', 'dask-scheduler', 'lz4c', 'bsdcat', 'python', 'dynamodb_load', 'imageio_remove_bin', 'cfadmin', 'dbus-monitor', 'rst2odt_prepstyles.py', 'tabulate', 'r8tohdf', 'cwutil', 'conda-convert', 'gif2h5', 'xmllint', 'taskadmin', 'bsdcpio', 'fribidi', 'bzcat', 'rcc', 'curl', 'h5unjam', 'h4redeploy', 'isort', 'tqdm', 'tiff2ps', 'bundle_image', 'dbus-launch', 'gtester', 'anaconda', 'easy_install', 'dask-ssh', 'hdf24to8', 'fc-pattern', 'qgltf', 'pg_config', 'k5srvutil', 'hdfcomp', 'sphinx-autogen', 'anaconda-navigator', 'list_instances', 'python3-config', 'pkgdata', 'dbus-test-tool', 'hrepack', 'fax2ps', 'epylint', 'vshow', 'freetype-config', 'jupyter-migrate', 'rst2man.py', 'cq', 'infotocap', 'tclsh8.6', 'pixeltool', 'reset', 'compile_et', 'xzegrep', 'jupyter-console', 'libpng16-config', 'qmlplugindump', 'xmlpatternsvalidator', 'qwebengine_convert_dict', 'hdftor8', 'tset', 'odbcinst', 'gendict', 'gapplication', 'jupyter-kernelspec', 'pasteurize', 'isql', 'python3.7-config', 'qdbusxml2cpp', 'rst2odt.py', 'jupyter-qtconsole', 'pango-list', 'dask-submit', 'kdestroy', 'dbus-run-session', 'xml2-config.bak', 'gresource', 'bzip2', 'zstd', 'zstdmt', 'h5clear', 'h5diff', 'deactivate', '2to3-3.7', 'gdbus', 'qdbuscpp2xml', 'gst-device-monitor-1.0', 'openssl', 'rg', 'jlpm', 'xslt-config', 'bzcmp', 'unlz4', 'fc-cache', 'bunzip2', 'xmlpatterns', 'sphinx-build', 'pango-view', 'rstpep2html.py', 'gencfu', 'vmake', 'conda-skeleton', 'genrb', 'futurize', 'hdf8to24', 'fc-conflist', 'lzgrep', 'wish8.6', 'qtpaths', 'sclient', 'rdjpgcom', 'hdfls', 'spyder', 'tiffinfo', 'libtool', 'cygdb', 'sim_client', 'qlalr', 'jupyter-troubleshoot', 'h4cc', 'iusql', 'pt2to3', 'wheel', 'jupyter-nbextension', 'mysql_config', 'tabs', 'hdf2jpeg', 'glib-compile-schemas', 'fc-query', 'ncdump', 'invproj', 'conda-metapackage', 'h52gif', 'rst2html.py', 'f2py3', 'nosetests', 'skivi', 'png-fix-itxt', 'libtoolize', 'anaconda-project', 'chardetect', 'nccopy', 'glib-compile-resources', 'tiffdump', 'bzmore', 'qml', 'gtester-report', 'dynamodb_dump', 'lzless', 'h5watch', 'xmlcatalog', 'idle3', 'dbus-daemon', 'jupyter-labhub', 'odbc_config', 'nc3tonc4', 'tiffcp', 'jupyter', 'hdfimport', 'qt.conf', 'showtable', 'py.test', 'gst-stats-1.0', 'python3.7m', 'iptest', 'zstdcat', 'ktutil', 'kinit', 'dbus-cleanup-sockets', 'conda-server', 'canbusutil', 'qmlcachegen', 'lzfgrep', 'cct', 'pttree', 'python3', 'lzmore', 'numba', 'qtattributionsscanner', 'conda-develop', 'pyuic5', 'glacier', 'idle3.7', 'lrelease', 'lzmadec', 'qscxmlc', 'h5fc', 'xzless', 'jsonschema', 'lz4cat', 'hdf2gif', 'wrjpgcom', 'hdp', 'tiffsplit', 'pyrcc5', 'kswitch', 'h5jam', 'ipython3', 'conda-verify', 'qmake', 'nc4tonc3', 'kill_instance', 'moc', 'vba_extract.py', 'ptdump', 'geod', 'hb-shape', 'qtdiag', 'gst-play-1.0', 'krb5-config', 'ppm2tiff', 'pydoc3.7', 'cython', 'python3.7', 'jupyter-notebook', 'uuclient', 'keyring', 'gie', 'pcre-config', 'h5repart', 'hb-subset', 'fax2tiff', 'xzdiff', 'rst2xetex.py', 'h4_ncdump', 'fitscheck', 'pycodestyle', 'clear', 'gst-launch-1.0', 'repc', 'cjpeg', 'h5dump', 'kpasswd', 'xzcat', 'rst2xml.py', 'ipcontroller', 'lconvert', 'activate', 'h5perf_serial', 'sqlite3', 'h5format_convert', 'ksu', 'captoinfo', 'lupdate', 'hdfpack', 'lzdiff', 'dbus-update-activation-environment', 'conda-debug', 'conda-render', 'syncqt.pl', 'pybabel', 'symilar', 'bzegrep', 'pyreverse', 'paltohdf', 'fc-list', 'my_print_defaults', 'xzfgrep', 'tiffdither', 'derb', 'dltest', 'cythonize', 'proj', 'tiffcrop', 'qhelpconverter', 'pkginfo', 'raw2tiff', 'pyami_sendmail', 'fits2bitmap', 'qmltestrunner', 'jupyter-trust', 'python3.7m-config', 'pylint', 'kadmin', 'xzdec', 'isympy', 'qmlscene', 'h4_ncgen', 'rst2latex.py', 'imageio_download_bin', 'binstar', 'jupyter-lab', 'conda-index', 'conda', 'wcslint', 'libpng-config', 'tclsh', 'pylupdate5', 'linguist', 'unxz', 'pcregrep', 'slencheck', 'ncursesw6-config', 'qmleasing', 'fitsdiff', 'gio-querymodules', '2to3', 'hdiff', 'jupyter-run', 'ncgen3', 'hdfunpac', 'tiff2bw', 'hb-ot-shape-closure', 'invgeod', 'dask-worker', 'fc-match'] Warning accessing /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin gives errors: [Errno 2] No such file or directory: '/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin' ['ctest', 'cpack', 'cmake', 'ccmake'] ['cray_mpiio_example_gnuplot.sh', 'cray_mpiio_example_gnuplot_by_ranks.sh', 'cray_mpiio_example_gnuplot_multiplot.sh', 'cray_mpiio_example_gnuplot_summary.sh', 'cray_mpiio_gen_data', 'cray_mpiio_summary'] ['rca-helper', 'rca-hssconfig', 'rca_arpd', 'rca_send_booted'] ['apinit', 'apinit_rca_notify'] Warning accessing /opt/cray/alps/default/bin gives errors: [Errno 2] No such file or directory: '/opt/cray/alps/default/bin' ['jattach', 'jdetach', 'jkill', 'jsethid', 'jstat', 'jwait'] ['2.25.0.craype.ld', 'CC', 'cc', 'driver', 'ftn'] ['codecov', 'dbmerge', 'fortcom', 'fpp', 'gcore-ia', 'gdb-ia', 'icc', 'icc.cfg', 'icpc', 'icpc.cfg', 'ifort', 'ifort.cfg', 'libcilkrts.so.5', 'loopprofileviewer.csh', 'loopprofileviewer.sh', 'map_opts', 'mcpcom', 'offload_extract', 'profdcg', 'profmerge', 'profmergesampling', 'proforder', 'tselect', 'x86_64-linux.env', 'xiar', 'xiar.cfg', 'xild', 'xild.cfg'] ['check_perm.sh', 'backup.sh', 'crontab.txt', 'pyLD.py', 'ld_db.sh', 'ld', 'get_vasp_inputs.sh', 'hpss_backup.sh', 'aprun_db.sh', 'aprun.save', 'upload_db_lds.sh'] ['usgrsu', 'list-ssh-certs', 'wheres_my_job.py', 'ftp', 'prjdirs', 'tape_stats', 'stripe_large', 'hpss_target_directory_creation.py', 'getnim', 'dirquota', 'meshcoords', 'lmstat', 'fixdots2', 'take', 'find_and_kill', 'check-mpi.cce.cori', 'bbcp', 'mk_pip_cabundle.sh', 'nids_to_ranges', 'sw_support', 'stripe_medium', 'lspkg', 'fix_perms', 'gperf', 'fix_usg', 'burp', 'emptydots', 'hpss_file_sorter.script', 'check-mpi.intel.cori', 'sqs1', 'prjbdirs', 'linkinfo.sh', 'stripe_medium.backup', 'hpssquota', 'mods', 'hpss_file_sorter.py', 'o:q!', 'check-hybrid.intel.cori', 'findemptydirs', 'sshproxy.sh', 'check-mpi.gnu.cori', 'sqs.old', 'sqs', 'stripe_large.backup', 'jobstats', 'cmnquota', 'upinter', 'prjquota', 'give', 'pe_changes.py', 'prjaquota', 'sqs.new', 'check_license.sh', 'susw', 'xcmap', 'gen_nodelist.sh', 'svnlook', 'esl.sh', 'fixdots', 'home_over', 'check-hybrid.gnu.cori', 'hpss_file_sorter.py~', 'nc', 'stripe_small.backup', 'static_linking_ddt_md_th', 'swcats', 'nedit', 'check-hybrid.cce.cori', 'iris', 'stripe_small', 'dotmgr', 'hold_prjquota', 'home_usage', 'mynersc_wrappers', 'static_linking_ddt_md', 'wheres_my_job.py.bak', 'module_restore.sh', 'tape_order', 'tedi', 'ndots', 'nersc_host', 'cfsquota', 'not_used', 'run-and-watch.sh', 'generate_sorted_list_for_hpss.py', 'cmark', 'findtouch'] ['hsi', 'ftp', 'wfile', '.pftp_client_73', 'obins', '.htar.exe', '.hsi.exe', 'mkhpsstok', 'htar', 'hpss_avail', 'hsi_testcos', 'pftp'] Warning accessing /usr/common/nsg/bin gives errors: [Errno 2] No such file or directory: '/usr/common/nsg/bin' ['envldms.sh', 'ldms-csv-anonymize', 'ldms-csv-export-sos', 'ldms-l2_test.sh', 'ldms-meminfo.sh', 'ldms-pedigree', 'ldms-plugins.sh', 'ldms-py-rename.sh', 'ldms-py-subset_test.sh', 'ldms-py-syslog.sh', 'ldms-py-varset.sh', 'ldms-static-test.sh', 'ldms_ban.sh', 'ldms_local_opa2test.sh', 'ldmsd_controller', 'lmq', 'lsdate', 'ods_dump', 'sos-db', 'sos-import-csv', 'sos-monitor', 'sos-part', 'sos-schema', 'sos_cmd', 'sos_part_create', 'sos_part_delete', 'sos_part_export', 'sos_part_index', 'sos_part_modify', 'sos_part_move', 'sos_part_query'] ['.ldms-wrapper', 'json_test', 'ldms-aggd', 'ldms_ls', 'ldmsaggctl', 'ldmsctl', 'ldmsd', 'ldmsd_sos_init', 'ldmsd_stream_publish', 'ldmsd_stream_subscribe'] ['add.modules', 'mkroot', 'modulecmd'] [] ['.hmac256.hmac', '411toppm', 'BackGround', 'Backarrow2BackSpace', 'Backarrow2Delete', 'Mail', 'Signature_conversion', 'WebKitWebDriver', 'X', 'X11', 'Xdmx', 'Xephyr', 'Xnest', 'Xorg', 'Xvfb', 'Xvnc', '[', 'a4toa5', 'ac', 'aclocal', 'aclocal-1.15', 'aconnect', 'acpi_validate', 'acpibin', 'acpiexamples', 'acpiexec', 'acpihelp', 'acpinames', 'acpisrc', 'acpixtract', 'activation-client', 'addr2line', 'affixcompress', 'afs5log', 'agentxtrap', 'all_notes_off', 'allcm', 'allec', 'allneeded', 'alsaloop', 'alsamixer', 'alsatplg', 'alsaucm', 'amidi', 'amixer', 'amuFormat.sh', 'analyze', 'annotate', 'ansible', 'ansible-doc', 'ansible-galaxy', 'ansible-playbook', 'ansible-pull', 'ansible-vault', 'ant', 'antRun', 'antlr', 'antlr-config', 'anytopnm', 'aplay', 'aplaymidi', 'appdata2solv', 'applydeltaiso', 'applydeltarpm', 'apropos', 'ar', 'arch', 'arecord', 'arecordmidi', 'arpaname', 'as', 'asciitopgm', 'aseqdump', 'aseqnet', 'asn1Coding', 'asn1Decoding', 'asn1Parser', 'at', 'atktopbm', 'atq', 'atrm', 'attr', 'audit2allow', 'audit2why', 'aulast', 'aulastlog', 'ausyscall', 'autoconf', 'autoexpect', 'autoheader', 'autom4te', 'automake', 'automake-1.15', 'autopoint', 'autoreconf', 'autoscan', 'autoupdate', 'auvirt', 'avstopam', 'awk', 'b2sum', 'base32', 'base64', 'basename', 'bashbug', 'batch', 'bbox', 'bc', 'bdftogd', 'bdftruncate', 'bgp_btoa', 'bibtex', 'binhex.pl', 'bioradtopgm', 'bison', 'blkiomon', 'blkrawverify', 'bmptopnm', 'bmptoppm', 'bno_plot.py', 'bonnie', 'bonobo-activation-run-query', 'bonobo-slay', 'bootctl', 'broadwayd', 'brushtopbm', 'btrecord', 'btreplay', 'btt', 'build-classpath', 'build-classpath-directory', 'build-jar-repository', 'bunzip2', 'busctl', 'busybox', 'busybox.install', 'bwrap', 'bzcat', 'bzcmp', 'bzdiff', 'bzegrep', 'bzfgrep', 'bzgrep', 'bzip2', 'bzip2recover', 'bzless', 'bzmore', 'bznew', 'c++', 'c++filt', 'c3270', 'c_rehash', 'cal', 'call-browser', 'callgrind_annotate', 'callgrind_control', 'cameratopam', 'cancel', 'capinfos', 'captoinfo', 'captype', 'card_eventmgr', 'cardos-tool', 'cat', 'catchsegv', 'catman', 'cc', 'ccmake', 'ccmakedep', 'certtool', 'cg_annotate', 'cg_diff', 'cg_merge', 'chacl', 'chage', 'chardetect', 'chardetect-2.7', 'chardetect-3.6', 'chattr', 'chcat', 'chcon', 'check-binary-files', 'checkmodule', 'checkpolicy', 'chfn', 'chgrp', 'chkconfig', 'chkstat', 'chmem', 'chmod', 'chmorph', 'chooser', 'chown', 'chronyc', 'chroot', 'chrp-addnote', 'chrt', 'chsh', 'chvt', 'ci', 'cifscreds', 'cifsdd', 'cifsiostat', 'cistopbm', 'cksum', 'clamav-config', 'clambc', 'clamconf', 'clamdscan', 'clamdtop', 'clamscan', 'clean-binary-files', 'cleanlinks', 'clear', 'clrunimap', 'clusterdb', 'cmake', 'cmp', 'cmuwmtopbm', 'cnf', 'co', 'col', 'colcrt', 'colrm', 'column', 'combinedeltarpm', 'comm', 'command-not-found', 'compile_et', 'comps2solv', 'convmv', 'corelist', 'cp', 'cpack', 'cpan', 'cpio', 'cpp', 'cpp-7', 'cpupcstat', 'cpupower', 'cray-nvidia-acct', 'cray-nvidia-energy', 'cray-xid-logger', 'crc32', 'create-jar-links', 'createdb', 'createrepo', 'createrepo_c', 'createuser', 'crontab', 'cryptdir', 'cryptoflex-tool', 'csh', 'csplit', 'ctags', 'ctags-exuberant', 'ctest', 'cups-config', 'cupstestdsc', 'cupstestppd', 'curl', 'curl-config', 'cut', 'cvs', 'cvsbug', 'cvslock', 'cvt', 'cyrus_sasl_sample_client', 'cyrus_sasl_sample_server', 'dasher', 'date', 'db48_archive', 'db48_checkpoint', 'db48_deadlock', 'db48_dump', 'db48_hotbackup', 'db48_load', 'db48_printlog', 'db48_recover', 'db48_sql', 'db48_stat', 'db48_upgrade', 'db48_verify', 'db_archive', 'db_checkpoint', 'db_deadlock', 'db_dump', 'db_hotbackup', 'db_load', 'db_printlog', 'db_recover', 'db_sql', 'db_stat', 'db_upgrade', 'db_verify', 'dbilogstrip', 'dbiprof', 'dbiproxy', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-launch', 'dbus-launch.nox11', 'dbus-launch.x11', 'dbus-monitor', 'dbus-run-session', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dbwrap_tool', 'dc', 'dconf', 'dd', 'dd_rescue', 'ddbugtopbm', 'deallocvt', 'debinhex.pl', 'decryptdir', 'deltainfoxml2solv', 'delv', 'desktop-file-edit', 'desktop-file-install', 'desktop-file-validate', 'desktop-launch', 'devdump', 'df', 'dialog', 'diff', 'diff-jars', 'diff3', 'diffpp', 'dig', 'dir', 'dircolors', 'dirmngr', 'dirmngr-client', 'dirmngr_ldap', 'dirname', 'disable-paste', 'dislocate', 'display-buttons', 'display-coords', 'dkimsign.pl', 'dkimverify.pl', 'dltest', 'dm_date', 'dm_zdump', 'dmesg', 'dmxaddinput', 'dmxaddscreen', 'dmxinfo', 'dmxreconfig', 'dmxresize', 'dmxrminput', 'dmxrmscreen', 'dmxtodmx', 'dmxwininfo', 'dnie-tool', 'dnsdomainname', 'domainname', 'dos2unix', 'doxygen', 'dracut', 'driverless', 'dropdb', 'dropuser', 'drpmsync', 'dtrace', 'du', 'dump2psl.pl', 'dump2slvl.pl', 'dumpcap', 'dumpkeys', 'dumpsexp', 'dumpsolv', 'dvi2fax', 'dviasm', 'dvibook', 'dviconcat', 'dvidvi', 'dvigif', 'dvilualatex', 'dviluatex', 'dvipdf', 'dvipng', 'dvired', 'dviselect', 'dvisvgm', 'dvitodvi', 'dwp', 'dwz', 'easy_install', 'easy_install-2.7', 'ebrowse', 'echo', 'echo-client-2', 'ecpg', 'ed', 'edit', 'edit-xml-catalog', 'edit-xml-catalog.sh', 'editcap', 'egk-tool', 'egrep', 'egview', 'egvim', 'eidenv', 'eject', 'elfedit', 'emacs', 'emacs-gtk', 'emacs-x11', 'emacsclient', 'embedspu', 'enc2xs', 'encguess', 'encode_keychange', 'enscript', 'enscript.bin', 'env', 'envsubst', 'eog', 'eps2eps', 'epsffit', 'eqn', 'erb', 'erb.ruby2.5', 'escp2topbm', 'espeak', 'etags', 'etex', 'eu-addr2line', 'eu-ar', 'eu-elfcmp', 'eu-elfcompress', 'eu-elflint', 'eu-findtextrel', 'eu-make-debug-archive', 'eu-nm', 'eu-objdump', 'eu-ranlib', 'eu-readelf', 'eu-size', 'eu-stack', 'eu-strings', 'eu-strip', 'eu-unstrip', 'eventlogadm', 'eview', 'evim', 'evince', 'evince-previewer', 'evince-thumbnailer', 'ex', 'expand', 'expect', 'expiry', 'expr', 'extlinux', 'extractres', 'eyuvtoppm', 'f2py', 'f2py2', 'f2py2.7', 'f2py3', 'f2py3.6', 'factor', 'fallocate', 'false', 'fastjar', 'fc-cache', 'fc-cache32', 'fc-cat', 'fc-cat32', 'fc-list', 'fc-list32', 'fc-match', 'fc-match32', 'fc-pattern', 'fc-query', 'fc-scan', 'fc-validate', 'fdupes', 'fetchmail', 'fgconsole', 'fgrep', 'fiascotopnm', 'file', 'file-roller', 'filesize', 'fillup', 'fincore', 'find', 'find-jar', 'findmnt', 'findsmb', 'fips_standalone_hmac', 'fitstopnm', 'fixdlsrps', 'fixfmps', 'fixmacps', 'fixproc', 'fixpsditps', 'fixpspps', 'fixscribeps', 'fixtpps', 'fixwfwps', 'fixwpps', 'fixwwps', 'fiz', 'flask-2.7', 'flex', 'flex++', 'flock', 'fmt', 'fmtutil', 'fmtutil-sys', 'fmtutil-user', 'fold', 'foomatic-rip', 'formail', 'fragiso', 'free', 'freetype-config', 'freshclam', 'fribidi', 'fsfs-access-map', 'fstopgm', 'ftp', 'ftp-rfc', 'funzip', 'funzip-plain', 'fuser', 'fusermount', 'g++', 'g++-7', 'g-ir-annotation-tool', 'g-ir-compiler', 'g-ir-doc-tool', 'g-ir-generate', 'g-ir-inspect', 'g-ir-scanner', 'g13', 'g2r', 'gapplication', 'gawk', 'gcc', 'gcc-7', 'gcc-ar', 'gcc-ar-7', 'gcc-nm', 'gcc-nm-7', 'gcc-ranlib', 'gcc-ranlib-7', 'gccmakedep', 'gconf-editor', 'gconf-merge-tree', 'gconftool-2', 'gconftool-rebuild', 'gcore', 'gcov', 'gcov-7', 'gcov-dump', 'gcov-dump-7', 'gcov-tool', 'gcov-tool-7', 'gd2copypal', 'gd2togif', 'gd2topng', 'gdb', 'gdb-add-index', 'gdbm_dump', 'gdbm_load', 'gdbmtool', 'gdbserver', 'gdbus', 'gdbus-codegen', 'gdcmpgif', 'gdialog', 'gdk-pixbuf-csource', 'gdk-pixbuf-pixdata', 'gdk-pixbuf-query-loaders-64', 'gdm', 'gdm-screenshot', 'gdmflexiserver', 'gdparttopng', 'gdtopng', 'gedi', 'gedit', 'gem', 'gem.ruby2.5', 'gem2rpm', 'gem2rpm-0.10.1', 'gem2rpm.ruby2.5', 'gem2rpm.ruby2.5-0.10.1', 'gemtopbm', 'gemtopnm', 'genDDNSkey', 'gencat', 'gendiff', 'genscript', 'geqn', 'get-versions', 'get_kernel_version', 'getafm', 'getcifsacl', 'getconf', 'getdelays', 'getent', 'getfacl', 'getfattr', 'gethostip', 'getkeycodes', 'getopt', 'gettext', 'gettext.sh', 'gettextize', 'getunimap', 'gex', 'gids-tool', 'giftogd2', 'giftopnm', 'gio', 'gio-querymodules-64', 'git', 'git-new-workdir', 'git-receive-pack', 'git-shell', 'git-upload-archive', 'git-upload-pack', 'git_version.tcl', 'gkbd-keyboard-display', 'glib-compile-resources', 'glib-compile-schemas', 'glib-genmarshal', 'glib-gettextize', 'glib-mkenums', 'gmake', 'gnome', 'gnome-control-center', 'gnome-help', 'gnome-keyring', 'gnome-keyring-3', 'gnome-keyring-daemon', 'gnome-open', 'gnome-session', 'gnome-session-inhibit', 'gnome-session-quit', 'gnome-shell', 'gnome-shell-extension-prefs', 'gnome-terminal', 'gnome-text-editor', 'gnomesu', 'gnomevfs-cat', 'gnomevfs-copy', 'gnomevfs-df', 'gnomevfs-info', 'gnomevfs-ls', 'gnomevfs-mkdir', 'gnomevfs-monitor', 'gnomevfs-mv', 'gnomevfs-rm', 'gnuctags', 'gnuplot', 'gnutls-cli', 'gnutls-cli-debug', 'gnutls-serv', 'gobject-query', 'gouldtoppm', 'gpasswd', 'gpg', 'gpg-agent', 'gpg-connect-agent', 'gpg-error', 'gpg-error-config', 'gpg-wks-server', 'gpg-zip', 'gpg2', 'gpgconf', 'gpgme-tool', 'gpgparsemail', 'gpgrt-config', 'gpgscm', 'gpgsm', 'gpgtar', 'gpgv', 'gpgv2', 'gpm-root', 'gprof', 'grep', 'grepjar', 'gresource', 'groff', 'grog', 'grops', 'grotty', 'groups', 'gs', 'gsbj', 'gsdj', 'gsdj500', 'gsettings', 'gsettings-data-convert', 'gsftopk', 'gslj', 'gslp', 'gsnd', 'gst-device-monitor-1.0', 'gst-discoverer-1.0', 'gst-play-1.0', 'gstack', 'gtbl', 'gtester', 'gtester-report', 'gtf', 'gtk-builder-convert', 'gtk-builder-tool', 'gtk-demo', 'gtk-encode-symbolic-svg', 'gtk-launch', 'gtk-query-immodules-2.0-64', 'gtk-query-immodules-3.0-64', 'gtk-query-settings', 'gtk-update-icon-cache', 'gtk-update-icon-cache-2.0', 'gtk-update-icon-cache-3.0', 'gtk3-demo', 'gtk3-demo-application', 'gtk3-icon-browser', 'gtk3-widget-factory', 'guess_encoding', 'guild', 'guile', 'guile-tools', 'gunicorn', 'gunicorn-2.7', 'gunicorn_paster', 'gunicorn_paster-2.7', 'gunzip', 'gv', 'gv-update-userconfig', 'gvfs-cat', 'gvfs-copy', 'gvfs-info', 'gvfs-less', 'gvfs-ls', 'gvfs-mime', 'gvfs-mkdir', 'gvfs-monitor-dir', 'gvfs-monitor-file', 'gvfs-mount', 'gvfs-move', 'gvfs-open', 'gvfs-rename', 'gvfs-rm', 'gvfs-save', 'gvfs-set-attribute', 'gvfs-trash', 'gvfs-tree', 'gvi', 'gview', 'gvim', 'gvimdiff', 'gvimtutor', 'gzexe', 'gzip', 'h2ph', 'h2xs', 'hardlink', 'hattrib', 'hcd', 'hcopy', 'hdel', 'hdifftopam', 'hdir', 'hdisk.pl', 'head', 'hexdump', 'hformat', 'hipstopgm', 'hls', 'hltest', 'hmac256', 'hmkdir', 'hmount', 'host', 'hostid', 'hostname', 'hostnamectl', 'hpwd', 'hrename', 'hrmdir', 'hugeadm', 'hugectl', 'hugeedit', 'humount', 'hunspell', 'hunzip', 'hvol', 'hwloc-annotate', 'hwloc-assembler', 'hwloc-assembler-remote', 'hwloc-bind', 'hwloc-calc', 'hwloc-compress-dir', 'hwloc-diff', 'hwloc-distances', 'hwloc-distrib', 'hwloc-gather-topology', 'hwloc-info', 'hwloc-ls', 'hwloc-patch', 'hwloc-ps', 'hzip', 'i386', 'iasecc-tool', 'iasl', 'ib_atomic_bw', 'ib_atomic_lat', 'ib_read_bw', 'ib_read_lat', 'ib_send_bw', 'ib_send_lat', 'ib_write_bw', 'ib_write_lat', 'ibdiagnet', 'ibdiagpath', 'ibdmchk', 'ibdmsh', 'ibdmtr', 'ibis', 'ibnlparse', 'ibtopodiff', 'iceauth', 'icesh', 'icesh-lite', 'icewm', 'icewm-lite', 'icewm-session', 'icewm-session-lite', 'icewmbg', 'icewmbg-lite', 'icewmhint', 'icewmhint-lite', 'icontopbm', 'iconv', 'icu-config', 'id', 'ident', 'idl2wrs', 'iecset', 'ifconfig', 'ifnames', 'ilbmtoppm', 'imake', 'imgtoppm', 'includeres', 'info', 'infocmp', 'infotocap', 'infotopam', 'initdb', 'initex', 'initviocons', 'install', 'install-catalog', 'install-catalog.sh', 'install-dtd.sh', 'install-info', 'installation_sources', 'installcheck', 'instmodsh', 'ionice', 'iostat', 'iowatcher', 'ipcmk', 'ipcount', 'ipcrm', 'ipcs', 'ipf-mod.pl', 'ipmitool', 'ippfind', 'ipptool', 'iptab', 'irb', 'irb.ruby2.5', 'isodebug', 'isodump', 'isohybrid', 'isohybrid.pl', 'isoinfo', 'isolinux-config', 'isosize', 'isovfy', 'ispellaff2myspell', 'isql', 'iusql', 'jar', 'jarsigner', 'java', 'javac', 'javadoc', 'javap', 'jbigtopnm', 'jcmd', 'jconsole', 'jdb', 'jdeprscan', 'jdeps', 'jhsdb', 'jimage', 'jinfo', 'jjs', 'jlink', 'jmap', 'jmod', 'join', 'journalctl', 'jpeg2ktopam', 'jpegtopnm', 'jps', 'jq', 'jrunscript', 'jshell', 'json_pp', 'jstack', 'jstat', 'jstatd', 'kbd', 'kbd_mode', 'kbdinfo', 'kbdrate', 'kbxutil', 'kdumpid', 'kernel-install', 'keyctl', 'keygen', 'keytab-lilo', 'keytool', 'kibitz', 'kill', 'killall', 'kinit', 'klist', 'kmod', 'kmp-install', 'koi8rxterm', 'kpseaccess', 'kpsepath', 'kpsereadlink', 'kpsestat', 'kpsetool', 'kpsewhere', 'kpsewhich', 'kpsexpand', 'ksh', 'lacheck', 'last', 'lastb', 'lastcomm', 'lastlog', 'latex', 'ld', 'ld.bfd', 'ldapadd', 'ldapcompare', 'ldapdelete', 'ldapexop', 'ldapmodify', 'ldapmodrdn', 'ldappasswd', 'ldapsearch', 'ldapurl', 'ldapwhoami', 'ldd', 'leaftoppm', 'less', 'lessclose.sh', 'lessecho', 'lesskey', 'lessopen.sh', 'lex', 'lexgrog', 'lfs', 'lfs_migrate', 'lftp', 'lftp_wrapper', 'lftpget', 'libgcrypt-config', 'libnetcfg', 'libpng-config', 'libpng16-config', 'libtool', 'libtoolize', 'linc-cleanup-sockets', 'line', 'link', 'linux32', 'linux64', 'lispmtopgm', 'lksh', 'ln', 'lndir', 'lnstat', 'loadkeys', 'loadmof.sh', 'loadunimap', 'locale', 'localectl', 'localedef', 'locate', 'lockfile', 'logger', 'loginctl', 'logname', 'lognormalizer', 'look', 'lp', 'lpoptions', 'lpq', 'lpr', 'lprm', 'lprsetup.sh', 'lpstat', 'lpunlock', 'ls', 'lsar', 'lsattr', 'lsb-release', 'lsb_release', 'lsblk', 'lscpu', 'lsdev', 'lsinitrd', 'lsipc', 'lslocks', 'lslogins', 'lsmem', 'lsmod', 'lsns', 'lsof', 'lss16toppm', 'lsscsi', 'lstopo', 'lstopo-no-graphics', 'lsusb', 'lsusb.py', 'ltrace', 'lua', 'lua5.3', 'luac', 'luac5.3', 'luajittex', 'lualatex', 'luaotfload-tool', 'luatex', 'luit', 'luitx', 'lwp-download', 'lwp-dump', 'lwp-mirror', 'lwp-request', 'lz', 'lz4', 'lz4c', 'lz4cat', 'lzcat', 'lzcmp', 'lzdiff', 'lzegrep', 'lzfgrep', 'lzgrep', 'lzless', 'lzma', 'lzmadec', 'lzmainfo', 'lzmore', 'm17n-db', 'm4', 'mac2unix', 'macptopbm', 'mail', 'mailq', 'mailstat', 'mailx', 'make', 'make_method', 'makealias', 'makedeltaiso', 'makedeltarpm', 'makedepend', 'makedumpfile', 'makedumpfile-R.pl', 'makeg', 'makeindex', 'makeinfo', 'man', 'mandb', 'manpath', 'manweb', 'mapscrn', 'mariadb_config', 'mattrib', 'mbadblocks', 'mcat', 'mcd', 'mcheck', 'mclasserase', 'mcomp', 'mcookie', 'mcopy', 'md5pass', 'md5sum', 'mdatopbm', 'mdel', 'mdeltree', 'mdig', 'mdir', 'mdu', 'memdiskfind', 'memhog', 'memkind-hbw-nodes', 'merge', 'merge-pciids', 'mergecap', 'mergelib', 'mergerepo', 'mergerepo_c', 'mergesolv', 'mesg', 'mev', 'mformat', 'mgrtopbm', 'migratepages', 'migspeed', 'minfo', 'mk_cmds', 'mkafmmap', 'mkdir', 'mkdirhier', 'mkdiskimage', 'mkfifo', 'mkfontdir', 'mkfontscale', 'mkhtmlindex', 'mkhybrid', 'mkindex', 'mkinfodir', 'mkisofs', 'mkmanifest', 'mknod', 'mkocp', 'mkofm', 'mkpasswd', 'mksh', 'mksquashfs', 'mktemp', 'mktexfmt', 'mktexlsr', 'mktexmf', 'mktexpk', 'mktextfm', 'mkzftree', 'mkzimage_cmdline', 'mlabel', 'mmd', 'mmdbresolve', 'mmount', 'mmove', 'mmroff', 'modhash', 'modifyrepo', 'modifyrepo_c', 'modsign-verify', 'mof_compiler', 'mof_compiler-2.7', 'mof_compiler-3.6', 'more', 'mount', 'mountpoint', 'mouse-test', 'mpartition', 'mpi-selector', 'mpi-selector-menu', 'mpicalc', 'mpstat', 'mrd', 'mren', 'mrftopbm', 'ms_print', 'msgattrib', 'msgcat', 'msgcmp', 'msgcomm', 'msgconv', 'msgen', 'msgexec', 'msgfilter', 'msgfmt', 'msggrep', 'msginit', 'msgmerge', 'msgunfmt', 'msguniq', 'mshortname', 'mshowfat', 'mstconfig', 'mstflint', 'mstfwreset', 'mstmcra', 'mstmread', 'mstmtserver', 'mstmwrite', 'mstregdump', 'mstvpd', 'mtools', 'mtoolstest', 'mtvtoppm', 'mtype', 'multixterm', 'munch', 'munge', 'mutt', 'mutter', 'mv', 'mvxattr', 'mxtar', 'mydvichk', 'myquota', 'mysql', 'mysql_config', 'mysqladmin', 'mysqlcheck', 'mysqld_safe_helper', 'mysqldump', 'mysqlimport', 'mysqlshow', 'mzip', 'namei', 'nc', 'ncurses6-config', 'ncursesw6-config', 'neotoppm', 'neqn', 'net', 'net-server', 'net-snmp-cert', 'net-snmp-config', 'net-snmp-create-v3-user', 'netaddr-2.7', 'netcat', 'netkey-tool', 'netstat', 'newaliases', 'newgidmap', 'newgrp', 'newuidmap', 'ngettext', 'nice', 'nisdomainname', 'nl', 'nm', 'nmap', 'nmblookup', 'nmbstatus', 'nohup', 'notify-send', 'npa-tool', 'nproc', 'nroff', 'nsenter', 'nslookup', 'nstat', 'nsupdate', 'ntlm_auth', 'numactl', 'numademo', 'numastat', 'numfmt', 'nvidia-bug-report.sh', 'nvidia-cuda-mps-control', 'nvidia-cuda-mps-server', 'nvidia-debugdump', 'nvidia-persistenced', 'nvidia-settings', 'nvidia-smi', 'nvidia-xconfig', 'oLschema2ldif', 'objcopy', 'objdump', 'oci-image-tool', 'ocount', 'ocsptool', 'od', 'odbc_config', 'odbcinst', 'odd2even', 'ofl', 'oid2name', 'old', 'op-check-perfevents', 'opannotate', 'oparchive', 'openpgp-tool', 'opensc-asn1', 'opensc-explorer', 'opensc-notify', 'opensc-tool', 'openssl', 'openvt', 'operf', 'opgprof', 'ophelp', 'opimport', 'opjitconv', 'opreport', 'oprofile_map_events.pl', 'oprofile_start.sh', 'outpsfheader', 'over', 'p11-kit', 'p11tool', 'pack200', 'pagesize', 'palmtopnm', 'pamaddnoise', 'pamarith', 'pambackground', 'pambayer', 'pamchannel', 'pamcomp', 'pamcrater', 'pamcut', 'pamdeinterlace', 'pamdepth', 'pamdice', 'pamditherbw', 'pamedge', 'pamendian', 'pamenlarge', 'pamexec', 'pamfile', 'pamfix', 'pamfixtrunc', 'pamflip', 'pamfunc', 'pamgauss', 'pamgradient', 'pamlookup', 'pammasksharpen', 'pammixinterlace', 'pammosaicknit', 'pamoil', 'pampaintspill', 'pamperspective', 'pampick', 'pampop9', 'pamrecolor', 'pamrgbatopng', 'pamrubber', 'pamscale', 'pamseq', 'pamshadedrelief', 'pamsharpmap', 'pamsharpness', 'pamsistoaglyph', 'pamslice', 'pamsplit', 'pamstack', 'pamstereogram', 'pamstretch', 'pamstretch-gen', 'pamsumm', 'pamsummcol', 'pamtable', 'pamthreshold', 'pamtilt', 'pamtoavs', 'pamtodjvurle', 'pamtofits', 'pamtogif', 'pamtohdiff', 'pamtohtmltbl', 'pamtojpeg2k', 'pamtompfont', 'pamtooctaveimg', 'pamtopam', 'pamtopdbimg', 'pamtopfm', 'pamtopng', 'pamtopnm', 'pamtosrf', 'pamtosvg', 'pamtotga', 'pamtotiff', 'pamtouil', 'pamtowinicon', 'pamtoxvmini', 'pamundice', 'pamunlookup', 'pamvalidate', 'pamwipeout', 'pamx', 'parse-sgml-catalog.sh', 'passmass', 'passwd', 'paste', 'patch', 'pathchk', 'pax', 'pbmclean', 'pbmlife', 'pbmmake', 'pbmmask', 'pbmminkowski', 'pbmpage', 'pbmpscale', 'pbmreduce', 'pbmtext', 'pbmtextps', 'pbmto10x', 'pbmto4425', 'pbmtoascii', 'pbmtoatk', 'pbmtobbnbg', 'pbmtocis', 'pbmtocmuwm', 'pbmtodjvurle', 'pbmtoepsi', 'pbmtoepson', 'pbmtoescp2', 'pbmtog3', 'pbmtogem', 'pbmtogo', 'pbmtoibm23xx', 'pbmtoicon', 'pbmtolj', 'pbmtoln03', 'pbmtolps', 'pbmtomacp', 'pbmtomatrixorbital', 'pbmtomda', 'pbmtomgr', 'pbmtomrf', 'pbmtonokia', 'pbmtopgm', 'pbmtopi3', 'pbmtopk', 'pbmtoplot', 'pbmtoppa', 'pbmtopsg3', 'pbmtoptx', 'pbmtosunicon', 'pbmtowbmp', 'pbmtox10bm', 'pbmtoxbm', 'pbmtoybm', 'pbmtozinc', 'pbmupc', 'pc1toppm', 'pcre-config', 'pcre2-config', 'pcregrep', 'pcretest', 'pcxtoppm', 'pdbedit', 'pdbimgtopam', 'pdf2dsc', 'pdf2ps', 'pdfdetach', 'pdfetex', 'pdffonts', 'pdfimages', 'pdfinfo', 'pdflatex', 'pdfseparate', 'pdfsig', 'pdftex', 'pdftexi2dvi', 'pdftocairo', 'pdftohtml', 'pdftoppm', 'pdftops', 'pdftotext', 'pdfunite', 'pdksh', 'peekfd', 'perf', 'perl', 'perl5.26.1', 'perlbug', 'perldoc', 'perlivp', 'perlthanks', 'pf2afm', 'pfbtopfa', 'pfmtopam', 'pg_archivecleanup', 'pg_basebackup', 'pg_config', 'pg_controldata', 'pg_ctl', 'pg_dump', 'pg_dumpall', 'pg_isready', 'pg_receivewal', 'pg_recvlogical', 'pg_resetwal', 'pg_restore', 'pg_rewind', 'pg_standby', 'pg_test_fsync', 'pg_test_timing', 'pg_upgrade', 'pg_waldump', 'pgbench', 'pgmabel', 'pgmbentley', 'pgmcrater', 'pgmdeshadow', 'pgmedge', 'pgmenhance', 'pgmhist', 'pgmkernel', 'pgmmake', 'pgmmedian', 'pgmminkowski', 'pgmmorphconv', 'pgmnoise', 'pgmnorm', 'pgmoil', 'pgmramp', 'pgmslice', 'pgmtexture', 'pgmtofs', 'pgmtolispm', 'pgmtopbm', 'pgmtopgm', 'pgmtoppm', 'pgmtosbig', 'pgmtost4', 'pgpewrap', 'pgpring', 'pgrep', 'pi1toppm', 'pi3topbm', 'pic', 'piconv', 'pidstat', 'pigz', 'pinentry', 'pinentry-curses', 'pinentry-tty', 'ping', 'ping6', 'pinky', 'piv-tool', 'pjtoppm', 'pkaction', 'pkcheck', 'pkcs11-tool', 'pkcs11_eventmgr', 'pkcs11_inspect', 'pkcs11_listcerts', 'pkcs11_make_hash_link', 'pkcs11_setup', 'pkcs15-crypt', 'pkcs15-init', 'pkcs15-tool', 'pkexec', 'pkg-config', 'pki', 'pkill', 'pklogin_finder', 'pktopbm', 'pkttyagent', 'pl2pm', 'pmap', 'pngtogd', 'pngtogd2', 'pngtopam', 'pngtopnm', 'pnmalias', 'pnmarith', 'pnmcat', 'pnmcolormap', 'pnmcomp', 'pnmconvol', 'pnmcrop', 'pnmcut', 'pnmdepth', 'pnmenlarge', 'pnmfile', 'pnmflip', 'pnmgamma', 'pnmhisteq', 'pnmhistmap', 'pnmindex', 'pnminterp', 'pnminvert', 'pnmmargin', 'pnmmercator', 'pnmmontage', 'pnmnlfilt', 'pnmnoraw', 'pnmnorm', 'pnmpad', 'pnmpaste', 'pnmpsnr', 'pnmquant', 'pnmquantall', 'pnmremap', 'pnmrotate', 'pnmscale', 'pnmscalefixed', 'pnmshear', 'pnmsmooth', 'pnmsplit', 'pnmstitch', 'pnmtile', 'pnmtoddif', 'pnmtofiasco', 'pnmtofits', 'pnmtojbig', 'pnmtojpeg', 'pnmtopalm', 'pnmtopclxl', 'pnmtoplainpnm', 'pnmtopng', 'pnmtopnm', 'pnmtops', 'pnmtorast', 'pnmtorle', 'pnmtosgi', 'pnmtosir', 'pnmtotiff', 'pnmtotiffcmyk', 'pnmtoxwd', 'pod2html', 'pod2man', 'pod2texi', 'pod2text', 'pod2usage', 'pod_cover', 'podchecker', 'podselect', 'postgres', 'postmaster', 'pphs', 'ppm3d', 'ppmbrighten', 'ppmchange', 'ppmcie', 'ppmcolormask', 'ppmcolors', 'ppmdcfont', 'ppmddumpfont', 'ppmdim', 'ppmdist', 'ppmdither', 'ppmdmkfont', 'ppmdraw', 'ppmfade', 'ppmflash', 'ppmforge', 'ppmglobe', 'ppmhist', 'ppmlabel', 'ppmmake', 'ppmmix', 'ppmnorm', 'ppmntsc', 'ppmpat', 'ppmquant', 'ppmquantall', 'ppmrainbow', 'ppmrelief', 'ppmrough', 'ppmshadow', 'ppmshift', 'ppmspread', 'ppmtoacad', 'ppmtoapplevol', 'ppmtoarbtxt', 'ppmtoascii', 'ppmtobmp', 'ppmtoeyuv', 'ppmtogif', 'ppmtoicr', 'ppmtoilbm', 'ppmtojpeg', 'ppmtoleaf', 'ppmtolj', 'ppmtolss16', 'ppmtomap', 'ppmtomitsu', 'ppmtoneo', 'ppmtopcx', 'ppmtopgm', 'ppmtopi1', 'ppmtopict', 'ppmtopj', 'ppmtopjxl', 'ppmtoppm', 'ppmtopuzz', 'ppmtorgb3', 'ppmtosixel', 'ppmtospu', 'ppmtoterm', 'ppmtotga', 'ppmtouil', 'ppmtowinicon', 'ppmtoxpm', 'ppmtoyuv', 'ppmtoyuvsplit', 'ppmtv', 'ppmwheel', 'pr', 'pr3287', 'prctl', 'preconv', 'printafm', 'printenv', 'printf', 'prjaquota', 'prjquota', 'prlimit', 'procinfo', 'procmail', 'profiles', 'protoc', 'prove', 'prtstat', 'ps', 'ps2ascii', 'ps2eps', 'ps2epsi', 'ps2frag', 'ps2pdf', 'ps2pdf12', 'ps2pdf13', 'ps2pdf14', 'ps2pdfwr', 'ps2ps', 'ps2ps2', 'psbook', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'psidtopgm', 'psktool', 'pslatex', 'pslog', 'psmerge', 'psnup', 'psql', 'psresize', 'psselect', 'pstops', 'pstree', 'pstree.x11', 'pt-tls-client', 'ptar', 'ptardiff', 'ptargrep', 'ptked', 'ptksh', 'ptx', 'purge', 'pwd', 'pwdx', 'pxelinux-options', 'pybabel', 'pybabel-2.7', 'pydoc', 'pydoc3', 'pydoc3.6', 'python', 'python-config', 'python2', 'python2-config', 'python2.7', 'python2.7-config', 'python3', 'python3.6', 'python3.6m', 'pyvenv', 'pyvenv-3.6', 'pywbemcli', 'pywbemcli-2.7', 'pywbemcli-3.6', 'qperf', 'qrttoppm', 'quota', 'quotasync', 'rake', 'rake.ruby.ruby2.5', 'rake.ruby2.5', 'randpkt', 'ranlib', 'rasttopnm', 'raw_ethernet_burst_lat', 'raw_ethernet_bw', 'raw_ethernet_fs_rate', 'raw_ethernet_lat', 'rawshark', 'rawtopgm', 'rawtoppm', 'rbash', 'rcs', 'rcs2log', 'rcsclean', 'rcsdiff', 'rcsmerge', 'rdoc', 'rdoc.ruby.ruby2.5', 'rdoc.ruby2.5', 'rds-info', 'rds-ping', 'rds-stress', 're2c', 'readelf', 'readlink', 'realpath', 'rebuild-jar-repository', 'recode-sr-latin', 'red', 'regdiff', 'regpatch', 'regshell', 'regtree', 'reindexdb', 'remunge', 'rename', 'renice', 'reordercap', 'repo2solv', 'repo2solv.sh', 'repomdxml2solv', 'rescan-scsi-bus.sh', 'reset', 'resize', 'resizecons', 'rev', 'revpath', 'rftp', 'rgb3toppm', 'rgview', 'rgvim', 'ri', 'ri.ruby.ruby2.5', 'ri.ruby2.5', 'rlatopam', 'rletopnm', 'rlog', 'rlogin-cwd', 'rm', 'rmdir', 'rmic', 'rmid', 'rmiregistry', 'rmmof.sh', 'route', 'routef', 'routel', 'rpcclient', 'rpcgen', 'rpm', 'rpm2cpio', 'rpmbuild', 'rpmdb', 'rpmdb2solv', 'rpmgraph', 'rpmkeys', 'rpmlocate', 'rpmmd2solv', 'rpmqpack', 'rpmquery', 'rpms2solv', 'rpmsign', 'rpmspec', 'rpmverify', 'rrdcgi', 'rrdcreate', 'rrdinfo', 'rrdtool', 'rrdupdate', 'rsync', 'rsyncstats', 'ruby', 'ruby-find-versioned', 'ruby.ruby2.5', 'run_perftest_loopback', 'run_perftest_multi_devices', 'runcon', 'rview', 'rvim', 's3270', 'sa-awl', 'sa-check_spamd', 'sa-compile', 'sa-learn', 'sa-update', 'sacct', 'sacctmgr', 'sadf', 'safe-rm', 'safe-rmdir', 'salloc', 'samba-regedit', 'sandbox', 'sar', 'sattach', 'sbatch', 'sbcast', 'sbigtopgm', 'sc-hsm-tool', 'scancel', 'scdaemon', 'scons', 'scons-2.3.0', 'scons-time', 'scons-time-2.3.0', 'sconsign', 'sconsign-2.3.0', 'scontrol', 'scout', 'scp', 'screen', 'screendump', 'script', 'scriptreplay', 'scsi_logging_level', 'scsi_mandat', 'scsi_readcap', 'scsi_ready', 'scsi_satl', 'scsi_start', 'scsi_stop', 'scsi_temperature', 'sdiag', 'sdiff', 'secon', 'sed', 'sedismod', 'sedispol', 'semodule_deps', 'semodule_expand', 'semodule_link', 'semodule_package', 'semodule_unpackage', 'sensors', 'sensors-conf-convert', 'sepolgen-ifgen', 'sepolgen-ifgen-attr-helper', 'sepolicy', 'seq', 'serialver', 'sessreg', 'set_default_volume', 'setarch', 'setcifsacl', 'setfacl', 'setfattr', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setpriv', 'setserial', 'setsid', 'setterm', 'setvesablank', 'setvtrgb', 'setxkbmap', 'sfcbdump', 'sfcbinst2mof', 'sfcbmof', 'sfcbmofpp', 'sfcbproc', 'sfcbrepos', 'sfcbstage', 'sfcbtrace', 'sfcbunstage', 'sfcbuuid', 'sftp', 'sg', 'sg_bg_ctl', 'sg_compare_and_write', 'sg_copy_results', 'sg_dd', 'sg_decode_sense', 'sg_emc_trespass', 'sg_format', 'sg_get_config', 'sg_get_lba_status', 'sg_ident', 'sg_inq', 'sg_logs', 'sg_luns', 'sg_map', 'sg_map26', 'sg_modes', 'sg_opcodes', 'sg_persist', 'sg_prevent', 'sg_raw', 'sg_rbuf', 'sg_rdac', 'sg_read', 'sg_read_attr', 'sg_read_block_limits', 'sg_read_buffer', 'sg_read_long', 'sg_readcap', 'sg_reassign', 'sg_referrals', 'sg_rep_zones', 'sg_requests', 'sg_reset', 'sg_reset_wp', 'sg_rmsn', 'sg_rtpg', 'sg_safte', 'sg_sanitize', 'sg_sat_identify', 'sg_sat_phy_event', 'sg_sat_read_gplog', 'sg_sat_set_features', 'sg_scan', 'sg_seek', 'sg_senddiag', 'sg_ses', 'sg_ses_microcode', 'sg_start', 'sg_stpg', 'sg_stream_ctl', 'sg_sync', 'sg_test_rwbuf', 'sg_timestamp', 'sg_turs', 'sg_unmap', 'sg_verify', 'sg_vpd', 'sg_wr_mode', 'sg_write_buffer', 'sg_write_long', 'sg_write_same', 'sg_write_verify', 'sg_write_x', 'sg_xcopy', 'sg_zone', 'sgather', 'sginfo', 'sgitopnm', 'sgm_dd', 'sgml-register-catalog', 'sgml2xmlcat.sh', 'sgmlcat2x.sh', 'sgp_dd', 'sh', 'sha1pass', 'sha1sum', 'sha224sum', 'sha256sum', 'sha384sum', 'sha512sum', 'shade-jar', 'shar', 'sharesec', 'sharkd', 'shasum', 'shifter', 'shifterimg', 'showchar', 'showconsolefont', 'showkey', 'showrgb', 'shred', 'shuf', 'sigtool', 'simpdftex', 'sinfo', 'sirtopnm', 'size', 'skill', 'skopeo', 'slabtop', 'sldtoppm', 'sleep', 'slencheck', 'sliceprint', 'slptool', 'smbcacls', 'smbclient', 'smbcontrol', 'smbcquotas', 'smbget', 'smbinfo', 'smbpasswd', 'smbprngenpdf', 'smbspool', 'smbtar', 'smbtree', 'smicache', 'smidiff', 'smidump', 'smilint', 'smime_keys', 'smiquery', 'smistrip', 'smixlate', 'smtpd.py', 'snice', 'snmp-bridge-mib', 'snmpbulkget', 'snmpbulkwalk', 'snmpcheck', 'snmpconf', 'snmpdelta', 'snmpdf', 'snmpget', 'snmpgetnext', 'snmpinform', 'snmpkey', 'snmpnetstat', 'snmpset', 'snmpstatus', 'snmptable', 'snmptest', 'snmptls', 'snmptranslate', 'snmptrap', 'snmpusm', 'snmpvacm', 'snmpwalk', 'socklist', 'soelim', 'sort', 'spamassassin', 'spamc', 'spawn_console', 'spawn_login', 'spax', 'spctoppm', 'speaker-test', 'splain', 'split', 'spottopgm', 'sprio', 'sprof', 'sputoppm', 'sqlite3', 'sqlite3_analyzer', 'sqliterepo', 'sqliterepo_c', 'squeue', 'squidclient', 'sreport', 'srftopam', 'srptool', 'srun', 'ss', 'ssh', 'ssh-add', 'ssh-agent', 'ssh-copy-id', 'ssh-keygen', 'ssh-keyscan', 'sshare', 'sss_ssh_authorizedkeys', 'sss_ssh_knownhostsproxy', 'sstat', 'st4topgm', 'stap', 'stap-merge', 'stap-report', 'stapbpf', 'staprun', 'stapsh', 'star', 'startx', 'stat', 'states', 'stdbuf', 'stdlogctl', 'strace', 'strace-graph', 'strace-log-merge', 'strigger', 'strings', 'strip', 'stty', 'su', 'sum', 'sunicontopnm', 'suse-update-mime-defaults', 'susetags2solv', 'svgtopam', 'sview', 'svn', 'svn-bench', 'svn-populate-node-origins-index', 'svn_apply_autoprops.py', 'svnadmin', 'svnauthz', 'svnauthz-validate', 'svnbench', 'svndiff', 'svndumpfilter', 'svnfsfs', 'svngrep', 'svnlook', 'svnmucc', 'svnraisetreeconflict', 'svnrdump', 'svnserve', 'svnsync', 'svnversion', 'sync', 'syslinux', 'syslinux-mtools', 'syslinux2ansi', 'systemctl', 'systemd-analyze', 'systemd-ask-password', 'systemd-cat', 'systemd-cgls', 'systemd-cgtop', 'systemd-delta', 'systemd-detect-virt', 'systemd-escape', 'systemd-firstboot', 'systemd-hwdb', 'systemd-inhibit', 'systemd-machine-id-setup', 'systemd-mount', 'systemd-notify', 'systemd-path', 'systemd-run', 'systemd-socket-activate', 'systemd-stdio-bridge', 'systemd-sysusers', 'systemd-tmpfiles', 'systemd-tty-ask-password-agent', 'systemd-umount', 'systool', 'tabs', 'tac', 'tack', 'tail', 'tapestat', 'tar', 'targetcli', 'targetcli-3.6', 'targetctl', 'targetctl-3.6', 'tartest', 'taskset', 'tbl', 'tcl3270', 'tclsh', 'tclsh8.6', 'tcsh', 'tee', 'telnet', 'termprobes', 'test', 'test_igmpv3_join', 'testparm', 'testsaslauthd', 'testsolv', 'tethereal', 'tex', 'texconfig', 'texconfig-dialog', 'texconfig-sys', 'texhash', 'texi2any', 'texi2dvi', 'texi2pdf', 'texindex', 'texlinks', 'texlua', 'texluac', 'texluajit', 'texluajitc', 'text2pcap', 'tftp', 'tgatoppm', 'tgz', 'thinkjettopbm', 'thumbpdf', 'tic', 'tidy_changelog', 'tifftopnm', 'time', 'timed-read', 'timed-run', 'timedatectl', 'timeout', 'tkcon', 'tkjpeg', 'tkmib', 'tknewsbiff', 'tload', 'toe', 'top', 'touch', 'tpm_sealdata', 'tpm_unsealdata', 'tput', 'tr', 'trace', 'tracepath', 'tracepath6', 'traptoemail', 'tree', 'troff', 'true', 'truncate', 'trust', 'tset', 'tshark', 'tsort', 'tty', 'turbostat', 'tzselect', 'ucs2any', 'udevadm', 'uil', 'ul', 'ulockmgr_server', 'umoci', 'umount', 'uname', 'uname26', 'unar', 'unbuffer', 'uncompress', 'unexpand', 'unicode_start', 'unicode_stop', 'uniq', 'unix-lpr.sh', 'unix2dos', 'unix2mac', 'unlink', 'unlz4', 'unlzma', 'unmunch', 'unmunge', 'unpack200', 'unpigz', 'unrar', 'unrar_wrapper', 'unshar', 'unshare', 'unsquashfs', 'unxz', 'unzip', 'unzip-plain', 'unzipsfx', 'unzipsfx-plain', 'update-desktop-database', 'update-mime-database', 'update-xml-catalog', 'updatedb', 'updateinfoxml2solv', 'updmap', 'updmap-sys', 'updmap-user', 'uptime', 'urlgrabber', 'usb-devices', 'usbhid-dump', 'users', 'ustar', 'utmpdump', 'uudecode', 'uuencode', 'uuidgen', 'uuidparse', 'uxterm', 'uz', 'vacuumdb', 'vacuumlo', 'valgrind', 'valgrind-di-server', 'valgrind-listener', 'vdir', 'vdltodmx', 'verify_blkparse', 'vgdb', 'vi', 'view', 'vim', 'vim-nox11', 'vimdiff', 'vimtutor', 'vitmp', 'vlock', 'vmstat', 'vncconfig', 'vncpasswd', 'vncpasswd.arg', 'vncserver', 'vttest', 'vtysh', 'w', 'w3m', 'w3mman', 'wall', 'watch', 'watchgnupg', 'wayland-scanner', 'wbemai', 'wbemain', 'wbemcat', 'wbemci', 'wbemcli', 'wbemcli.py', 'wbemcli.py-2.7', 'wbemcli.py-3.6', 'wbemcm', 'wbemcmx', 'wbemdc', 'wbemdi', 'wbemec', 'wbemecn', 'wbemei', 'wbemein', 'wbemgc', 'wbemgcd', 'wbemgi', 'wbemgp', 'wbemmi', 'wbemri', 'wbemrin', 'wbemsp', 'wbinfo', 'wbmptopbm', 'wc', 'wdctl', 'webpng', 'westcos-tool', 'wget', 'whatis', 'whereis', 'which', 'who', 'whoami', 'whois', 'widget', 'winicontopam', 'winicontoppm', 'wish', 'wish8.6', 'wmidump', 'wmixtract', 'wordforms', 'wordlist2hunspell', 'write', 'x026', 'x0vncserver', 'x3270', 'x3270if', 'x86_64', 'x86_64-suse-linux-gnu-pkg-config', 'x86_energy_perf_policy', 'xargs', 'xauth', 'xbmtopbm', 'xconsole', 'xdg-desktop-icon', 'xdg-desktop-menu', 'xdg-email', 'xdg-icon-resource', 'xdg-mime', 'xdg-open', 'xdg-screensaver', 'xdg-settings', 'xdg-su', 'xdg-terminal', 'xdg_menu', 'xdg_menu_su', 'xdm', 'xdmxconfig', 'xf86debug', 'xgettext', 'xhost', 'xid_logger.sh', 'ximtoppm', 'xinit', 'xkbcomp', 'xkibitz', 'xli', 'xlito', 'xloadimage', 'xmessage', 'xmkmf', 'xml2-config', 'xml_grep', 'xml_merge', 'xml_pp', 'xml_spellcheck', 'xml_split', 'xmlcatalog', 'xmllint', 'xmltest', 'xmlwf', 'xmodmap', 'xorg-backtrace', 'xpath', 'xpmtoppm', 'xprop', 'xpstat', 'xrdb', 'xscreensaver', 'xscreensaver-command', 'xscreensaver-demo', 'xscreensaver-gl-helper', 'xset', 'xsetbg', 'xsetroot', 'xslt-config', 'xsltproc', 'xsubpp', 'xterm', 'xtermset', 'xview', 'xvminitoppm', 'xwdtopnm', 'xxd', 'xz', 'xzcat', 'xzcmp', 'xzdec', 'xzdiff', 'xzegrep', 'xzfgrep', 'xzgrep', 'xzless', 'xzmore', 'xznew', 'yacc', 'yat2m', 'ybmtopbm', 'yelp', 'yes', 'ypcat', 'ypchfn', 'ypchsh', 'ypdomainname', 'ypmatch', 'yppasswd', 'ypwhich', 'yuvsplittoppm', 'yuvtoppm', 'yuy2topam', 'yzpper', 'zcat', 'zcmp', 'zdiff', 'zegrep', 'zeisstopnm', 'zenity', 'zfgrep', 'zforce', 'zgrep', 'zip', 'zipcloak', 'zipdetails', 'zipgrep', 'zipgrep-plain', 'zipinfo', 'zipnote', 'zipsplit', 'zless', 'zmore', 'znew', 'zoo', 'zsh', 'zypp-CheckAccessDeleted', 'zypp-NameReqPrv', 'zypper'] ['arch', 'awk', 'basename', 'bash', 'blkparse', 'blktrace', 'btrace', 'cat', 'chgrp', 'chmod', 'chown', 'chvt', 'clrunimap', 'cp', 'cpio', 'csh', 'date', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-monitor', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dd', 'dd_rescue', 'deallocvt', 'df', 'dmesg', 'dnsdomainname', 'domainname', 'dumpkeys', 'echo', 'ed', 'egrep', 'ex', 'false', 'fgconsole', 'fgrep', 'fillup', 'find', 'findmnt', 'fsync', 'fuser', 'gawk', 'getkeycodes', 'getunimap', 'grep', 'guess_encoding', 'gunzip', 'gzip', 'hostname', 'ifconfig', 'initviocons', 'ip', 'kbd_mode', 'kbdinfo', 'kbdrate', 'keyctl', 'kill', 'ksh', 'lksh', 'ln', 'loadkeys', 'loadunimap', 'logger', 'login', 'ls', 'lsblk', 'lsmod', 'mail', 'mapscrn', 'md5sum', 'mkdir', 'mknod', 'mksh', 'mktemp', 'more', 'mount', 'mv', 'netstat', 'nisdomainname', 'openvt', 'outpsfheader', 'pdksh', 'pgrep', 'pidof', 'ping', 'ping6', 'pkill', 'ps', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'pwd', 'readlink', 'resizecons', 'rm', 'rmdir', 'route', 'rpm', 'screendump', 'sed', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setvesablank', 'setvtrgb', 'sh', 'showconsolefont', 'showkey', 'sleep', 'sort', 'spawn_console', 'spawn_login', 'stat', 'stty', 'su', 'sync', 'systemctl', 'systemd', 'systemd-ask-password', 'tar', 'tcsh', 'touch', 'tracepath', 'tracepath6', 'true', 'umount', 'uname', 'unicode_start', 'unicode_stop', 'usleep', 'vi', 'vim', 'ypdomainname', 'zcat', 'zsh'] ['gss-client', 'k5srvutil', 'kadmin', 'kdestroy', 'kinit', 'klist', 'kpasswd', 'krb5-config', 'ksu', 'kswitch', 'ktutil', 'kvno', 'sclient', 'sim_client', 'uuclient'] ['krb5-send-pr'] ['csmlversion', 'pe_cleanup_callback.sh', 'pe_postmount_callback.sh', 'pe_setup_callback.sh', 'set-gcc-libs', 'set_default', 'setup_shell_rcs.sh'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Bfort not found. Installing sowing for FortranStubs ================================================================================ TEST checkDependencies from config.packages.sowing(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.sowing(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.sowing(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing'] Could not locate an existing copy of SOWING: [] Downloading sowing =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-sowing.git for SOWING =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://bitbucket.org/petsc/pkg-sowing.git /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing'] Found a copy of SOWING in git.sowing Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', 'v1.1.25-p1^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', 'v1.1.25-p1'] stdout: bc33abe1e9818d95968d6897bfbfc35ed0c18b51 Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', 'bc33abe1e9818d95968d6897bfbfc35ed0c18b51'] SOWING was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Running configure on SOWING; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./configure --prefix=/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel stdout: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/bin/latex checking for gs... /usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/bfort/Makefile config.status: creating docs/doctext/Makefile config.status: creating docs/install/Makefile config.status: creating docs/tohtml/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing bib2html commands =============================================================================== Running make on SOWING; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/gmake clean stdout: for dir in src docs ; do ( cd $dir && /usr/bin/gmake clean ) ; done gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/gmake clean ) ; done gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/sys' rm -f *.o *~ gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/sys' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bfort' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out gmake[3]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml/testing' gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/gmake clean ; fi ) gmake[3]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext/test' rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit gmake[3]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' /bin/rm -f *.o *~ gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc test1.html test1.tex test1nc.tex test1nc.html test1.pmap gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/mapnames' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bib2html' rm -f tout.htm tout-bib.htm gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bib2html' gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src' gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs' make[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/bfort' rm -f bfort.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/bfort' make[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/doctext' rm -f doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/doctext' make[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/install' rm -f install.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/install' make[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/tohtml' rm -f tohtml.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/tohtml' gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a Running Executable WITHOUT threads to time it out Executing: /usr/bin/gmake stdout: (cd src/sys && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/sys' (cd src/tohtml && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml' gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml' (cd src/bfort && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bfort' gcc -DBASEDEF='"/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/bfort-base.txt"' -DBASEPATH='"/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/bfort-base.txt"' -DBASEPATH='"/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bfort' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' (cd src/doctext && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' gmake[1]: Nothing to be done for 'ALL'. gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' (cd src/mapnames && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/mapnames' =============================================================================== Running make install on SOWING; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/gmake install stdout: /usr/bin/install -c bin/bib2html /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/bib2html /usr/bin/install -c src/doctext/doctext /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/doctext /usr/bin/install -c src/doctext/doc2lt /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/tohtml if [ "`cd bin && pwd`" != "`cd /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/bfort /usr/bin/install -c src/mapnames/mapnames /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/man/man1/bfort.1 ;\ fi ********Output of running make on SOWING follows ******* checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/bin/latex checking for gs... /usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/bfort/Makefile config.status: creating docs/doctext/Makefile config.status: creating docs/install/Makefile config.status: creating docs/tohtml/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing bib2html commandsfor dir in src docs ; do ( cd $dir && /usr/bin/gmake clean ) ; done gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/gmake clean ) ; done gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/sys' rm -f *.o *~ gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/sys' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bfort' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out gmake[3]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml/testing' gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/gmake clean ; fi ) gmake[3]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext/test' rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit gmake[3]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' /bin/rm -f *.o *~ gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc test1.html test1.tex test1nc.tex test1nc.html test1.pmap gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/mapnames' gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bib2html' rm -f tout.htm tout-bib.htm gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bib2html' gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src' gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs' make[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/bfort' rm -f bfort.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/bfort' make[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/doctext' rm -f doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/doctext' make[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/install' rm -f install.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/install' make[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/tohtml' rm -f tohtml.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl make[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs/tohtml' gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a(cd src/sys && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/sys' (cd src/tohtml && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml' gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/tohtml' (cd src/bfort && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bfort' gcc -DBASEDEF='"/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/bfort-base.txt"' -DBASEPATH='"/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/bfort-base.txt"' -DBASEPATH='"/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/bfort' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' (cd src/doctext && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/doctext' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' gmake[1]: Nothing to be done for 'ALL'. gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/textfilt' (cd src/mapnames && /usr/bin/gmake ) gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.sowing/src/mapnames'/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: ../../lib/libsowing.a(file.o): in function `SYOpenWritableFile': file.c:(.text+0xc1f): warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: ../../lib/libsowing.a(file.o): in function `SYOpenWritableFile': file.c:(.text+0xc1f): warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' /usr/bin/install -c bin/bib2html /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/bib2html /usr/bin/install -c src/doctext/doctext /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/doctext /usr/bin/install -c src/doctext/doc2lt /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/tohtml if [ "`cd bin && pwd`" != "`cd /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/bfort /usr/bin/install -c src/mapnames/mapnames /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/share/man/man1/bfort.1 ;\ fi********End of Output of running make on SOWING ******* Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download SOWING: ['/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Found header files [] in ['/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking for headers [] in Download SOWING: ['/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/include', '/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkVersion from config.packages.sowing(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.sowing(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For sowing unable to find version information since includes and version includes are missing skipping version check ================================================================================ TEST checkSharedLibrary from config.packages.sowing(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared Checking for program /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/bfort...found Defined make macro "BFORT" to "/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/bfort" Checking for program /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/doctext...found Defined make macro "DOCTEXT" to "/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/doctext" Checking for program /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/mapnames...found Defined make macro "MAPNAMES" to "/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/mapnames" Checking for program /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/bib2html...found Defined make macro "BIB2HTML" to "/global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/bib2html" Running Executable WITHOUT threads to time it out Executing: /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/bfort -version stdout: bfort (sowing) release 1.1.25 of $Date: 2006-02-20 14:58:34 $ Running /global/homes/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/bin/bfort to generate fortran stubs child config.packages.sowing 335.957770 ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.007313 ================================================================================ TEST alternateConfigureLibrary from config.packages.radau5(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.006432 ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.005677 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.005427 ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.005974 ================================================================================ TEST alternateConfigureLibrary from config.packages.muparser(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.006571 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.006535 ================================================================================ TEST alternateConfigureLibrary from config.packages.memkind(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.006259 ================================================================================ TEST alternateConfigureLibrary from config.packages.libmesh(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/libmesh.py:76) TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.030562 ================================================================================ TEST alternateConfigureLibrary from config.packages.moose(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.005653 ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.006937 ================================================================================ TEST alternateConfigureLibrary from config.packages.libceed(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.006669 Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/lgrind...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/lgrind...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/lgrind...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/lgrind...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/lgrind...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/lgrind...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/lgrind...not found Checking for program /opt/cray/alps/default/bin/lgrind...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/lgrind...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/lgrind...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/lgrind...not found Checking for program /global/common/cori/software/altd/2.0/bin/lgrind...not found Checking for program /usr/common/software/bin/lgrind...not found Checking for program /usr/common/mss/bin/lgrind...not found Checking for program /usr/common/nsg/bin/lgrind...not found Checking for program /opt/ovis/bin/lgrind...not found Checking for program /opt/ovis/sbin/lgrind...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/lib/mit/bin/lgrind...not found Checking for program /usr/lib/mit/sbin/lgrind...not found Checking for program /opt/cray/pe/bin/lgrind...not found Checking for program /global/homes/m/madams/petsc_install/petsc/lib/petsc/bin/win32fe/lgrind...not found Unable to find programs ['lgrind'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['ddt-mpirun', 'forge', 'ddt', 'perf-report', 'forge-probe', 'map', 'forge-client', 'allinea-client', 'make-profiler-libraries', 'forge-mpirun', 'ddt-client'] ['qmlmin', 'iptest3', 'dask-mpi', 'sdbadmin', 'gss-client', 'cs2cs', 'ristosds', 'fc-scan', 'jupyter-kernel', 'navigator-updater', 'curl-config', 'bzgrep', 'xsltproc', 'jupyter-serverextension', 'lz4', 'runxlrd.py', 'pydoc', 'elbadmin', 'perror', 'dask-remote', 'geos-config', 'fitsheader', 'h5import', 'f2py', 'gif2hdf', 'fc-validate', 'glib-gettextize', 'pycc', 'pal2rgb', 'sqlite3_analyzer', 'sphinx-apidoc', 'uic', 'rst2html5.py', 'lzma', 'xzcmp', 'route53', 'tput', 'gst-discoverer-1.0', 'ncinfo', 'gsettings', 'sip', 'pip', 'hdftopal', 'pydoc3', 'h5mkgrp', 'gio', 'xmlwf', 'pyvenv-3.7', 'bsdtar', 'ncgen', 'tiffcmp', 'icuinfo', 'gencnval', 'pandoc', 'cph', 'ipython', 'xzgrep', 'pyvenv', 'pngfix', 'qmlimportscanner', 'rst2s5.py', 'h5redeploy', 'instance_events', 'ipcluster', 'qdoc', 'qtplugininfo', 'hdfed', 'jupyter-nbconvert', 'makeconv', 'tiffmedian', 'h5debug', 'qhelpgenerator', 'conda-inspect', 'gobject-query', 'conda-build', 'volint', 'toe', 'xml2-config', 'c_rehash', 'protoc', 'pep8', 'qcollectiongenerator', 'nc-config', 'fitsinfo', 'flask', 'hb-view', 'tic', 'kvno', 'lzcat', 'gdbus-codegen', 'conda-env', 'gst-inspect-1.0', 'dbus-send', 'h5c++', 'h5repack', 'wish', 'curve_keygen', 'pytest', 'tiffset', 'xzmore', 'xz', 'pyjson5', 'unlzma', 'unzstd', 'djpeg', 'glib-mkenums', 'fetch_file', 'gunicorn', 'asadmin', 'designer', 'qdbus', 'bokeh', 'dbus-uuidgen', 'sphinx-quickstart', 'infocmp', 'icu-config', 'ipengine', 'jpegtran', 'tiff2pdf', 'rst2html4.py', 'jupyter-bundlerextension', 'gst-typefind-1.0', 'h5cc', 'genbrk', 'klist', 'samp_hub', 'jpeg2hdf', 'pyflakes', 'launch_instance', 'h5stat', 's3put', 'bzfgrep', 'fc-cat', 'h5ls', 'qdbusviewer', 'cairo-trace', 'nad2bin', 'patchelf', 'lzegrep', 'jupyter-labextension', 'rst2pseudoxml.py', 'pandoc-citeproc', 'tiff2rgba', 'pcretest', 'h5copy', 'bzdiff', 'ptrepack', 'mturk', 'lzcmp', 'glib-genmarshal', 'pygmentize', 'fixqt4headers.pl', 'lzmainfo', 'bzless', 'assistant', 'qmllint', 'lss3', 'bzip2recover', 'f2py3.7', 'qmlprofiler', 'dask-scheduler', 'lz4c', 'bsdcat', 'python', 'dynamodb_load', 'imageio_remove_bin', 'cfadmin', 'dbus-monitor', 'rst2odt_prepstyles.py', 'tabulate', 'r8tohdf', 'cwutil', 'conda-convert', 'gif2h5', 'xmllint', 'taskadmin', 'bsdcpio', 'fribidi', 'bzcat', 'rcc', 'curl', 'h5unjam', 'h4redeploy', 'isort', 'tqdm', 'tiff2ps', 'bundle_image', 'dbus-launch', 'gtester', 'anaconda', 'easy_install', 'dask-ssh', 'hdf24to8', 'fc-pattern', 'qgltf', 'pg_config', 'k5srvutil', 'hdfcomp', 'sphinx-autogen', 'anaconda-navigator', 'list_instances', 'python3-config', 'pkgdata', 'dbus-test-tool', 'hrepack', 'fax2ps', 'epylint', 'vshow', 'freetype-config', 'jupyter-migrate', 'rst2man.py', 'cq', 'infotocap', 'tclsh8.6', 'pixeltool', 'reset', 'compile_et', 'xzegrep', 'jupyter-console', 'libpng16-config', 'qmlplugindump', 'xmlpatternsvalidator', 'qwebengine_convert_dict', 'hdftor8', 'tset', 'odbcinst', 'gendict', 'gapplication', 'jupyter-kernelspec', 'pasteurize', 'isql', 'python3.7-config', 'qdbusxml2cpp', 'rst2odt.py', 'jupyter-qtconsole', 'pango-list', 'dask-submit', 'kdestroy', 'dbus-run-session', 'xml2-config.bak', 'gresource', 'bzip2', 'zstd', 'zstdmt', 'h5clear', 'h5diff', 'deactivate', '2to3-3.7', 'gdbus', 'qdbuscpp2xml', 'gst-device-monitor-1.0', 'openssl', 'rg', 'jlpm', 'xslt-config', 'bzcmp', 'unlz4', 'fc-cache', 'bunzip2', 'xmlpatterns', 'sphinx-build', 'pango-view', 'rstpep2html.py', 'gencfu', 'vmake', 'conda-skeleton', 'genrb', 'futurize', 'hdf8to24', 'fc-conflist', 'lzgrep', 'wish8.6', 'qtpaths', 'sclient', 'rdjpgcom', 'hdfls', 'spyder', 'tiffinfo', 'libtool', 'cygdb', 'sim_client', 'qlalr', 'jupyter-troubleshoot', 'h4cc', 'iusql', 'pt2to3', 'wheel', 'jupyter-nbextension', 'mysql_config', 'tabs', 'hdf2jpeg', 'glib-compile-schemas', 'fc-query', 'ncdump', 'invproj', 'conda-metapackage', 'h52gif', 'rst2html.py', 'f2py3', 'nosetests', 'skivi', 'png-fix-itxt', 'libtoolize', 'anaconda-project', 'chardetect', 'nccopy', 'glib-compile-resources', 'tiffdump', 'bzmore', 'qml', 'gtester-report', 'dynamodb_dump', 'lzless', 'h5watch', 'xmlcatalog', 'idle3', 'dbus-daemon', 'jupyter-labhub', 'odbc_config', 'nc3tonc4', 'tiffcp', 'jupyter', 'hdfimport', 'qt.conf', 'showtable', 'py.test', 'gst-stats-1.0', 'python3.7m', 'iptest', 'zstdcat', 'ktutil', 'kinit', 'dbus-cleanup-sockets', 'conda-server', 'canbusutil', 'qmlcachegen', 'lzfgrep', 'cct', 'pttree', 'python3', 'lzmore', 'numba', 'qtattributionsscanner', 'conda-develop', 'pyuic5', 'glacier', 'idle3.7', 'lrelease', 'lzmadec', 'qscxmlc', 'h5fc', 'xzless', 'jsonschema', 'lz4cat', 'hdf2gif', 'wrjpgcom', 'hdp', 'tiffsplit', 'pyrcc5', 'kswitch', 'h5jam', 'ipython3', 'conda-verify', 'qmake', 'nc4tonc3', 'kill_instance', 'moc', 'vba_extract.py', 'ptdump', 'geod', 'hb-shape', 'qtdiag', 'gst-play-1.0', 'krb5-config', 'ppm2tiff', 'pydoc3.7', 'cython', 'python3.7', 'jupyter-notebook', 'uuclient', 'keyring', 'gie', 'pcre-config', 'h5repart', 'hb-subset', 'fax2tiff', 'xzdiff', 'rst2xetex.py', 'h4_ncdump', 'fitscheck', 'pycodestyle', 'clear', 'gst-launch-1.0', 'repc', 'cjpeg', 'h5dump', 'kpasswd', 'xzcat', 'rst2xml.py', 'ipcontroller', 'lconvert', 'activate', 'h5perf_serial', 'sqlite3', 'h5format_convert', 'ksu', 'captoinfo', 'lupdate', 'hdfpack', 'lzdiff', 'dbus-update-activation-environment', 'conda-debug', 'conda-render', 'syncqt.pl', 'pybabel', 'symilar', 'bzegrep', 'pyreverse', 'paltohdf', 'fc-list', 'my_print_defaults', 'xzfgrep', 'tiffdither', 'derb', 'dltest', 'cythonize', 'proj', 'tiffcrop', 'qhelpconverter', 'pkginfo', 'raw2tiff', 'pyami_sendmail', 'fits2bitmap', 'qmltestrunner', 'jupyter-trust', 'python3.7m-config', 'pylint', 'kadmin', 'xzdec', 'isympy', 'qmlscene', 'h4_ncgen', 'rst2latex.py', 'imageio_download_bin', 'binstar', 'jupyter-lab', 'conda-index', 'conda', 'wcslint', 'libpng-config', 'tclsh', 'pylupdate5', 'linguist', 'unxz', 'pcregrep', 'slencheck', 'ncursesw6-config', 'qmleasing', 'fitsdiff', 'gio-querymodules', '2to3', 'hdiff', 'jupyter-run', 'ncgen3', 'hdfunpac', 'tiff2bw', 'hb-ot-shape-closure', 'invgeod', 'dask-worker', 'fc-match'] Warning accessing /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin gives errors: [Errno 2] No such file or directory: '/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin' ['ctest', 'cpack', 'cmake', 'ccmake'] ['cray_mpiio_example_gnuplot.sh', 'cray_mpiio_example_gnuplot_by_ranks.sh', 'cray_mpiio_example_gnuplot_multiplot.sh', 'cray_mpiio_example_gnuplot_summary.sh', 'cray_mpiio_gen_data', 'cray_mpiio_summary'] ['rca-helper', 'rca-hssconfig', 'rca_arpd', 'rca_send_booted'] ['apinit', 'apinit_rca_notify'] Warning accessing /opt/cray/alps/default/bin gives errors: [Errno 2] No such file or directory: '/opt/cray/alps/default/bin' ['jattach', 'jdetach', 'jkill', 'jsethid', 'jstat', 'jwait'] ['2.25.0.craype.ld', 'CC', 'cc', 'driver', 'ftn'] ['codecov', 'dbmerge', 'fortcom', 'fpp', 'gcore-ia', 'gdb-ia', 'icc', 'icc.cfg', 'icpc', 'icpc.cfg', 'ifort', 'ifort.cfg', 'libcilkrts.so.5', 'loopprofileviewer.csh', 'loopprofileviewer.sh', 'map_opts', 'mcpcom', 'offload_extract', 'profdcg', 'profmerge', 'profmergesampling', 'proforder', 'tselect', 'x86_64-linux.env', 'xiar', 'xiar.cfg', 'xild', 'xild.cfg'] ['check_perm.sh', 'backup.sh', 'crontab.txt', 'pyLD.py', 'ld_db.sh', 'ld', 'get_vasp_inputs.sh', 'hpss_backup.sh', 'aprun_db.sh', 'aprun.save', 'upload_db_lds.sh'] ['usgrsu', 'list-ssh-certs', 'wheres_my_job.py', 'ftp', 'prjdirs', 'tape_stats', 'stripe_large', 'hpss_target_directory_creation.py', 'getnim', 'dirquota', 'meshcoords', 'lmstat', 'fixdots2', 'take', 'find_and_kill', 'check-mpi.cce.cori', 'bbcp', 'mk_pip_cabundle.sh', 'nids_to_ranges', 'sw_support', 'stripe_medium', 'lspkg', 'fix_perms', 'gperf', 'fix_usg', 'burp', 'emptydots', 'hpss_file_sorter.script', 'check-mpi.intel.cori', 'sqs1', 'prjbdirs', 'linkinfo.sh', 'stripe_medium.backup', 'hpssquota', 'mods', 'hpss_file_sorter.py', 'o:q!', 'check-hybrid.intel.cori', 'findemptydirs', 'sshproxy.sh', 'check-mpi.gnu.cori', 'sqs.old', 'sqs', 'stripe_large.backup', 'jobstats', 'cmnquota', 'upinter', 'prjquota', 'give', 'pe_changes.py', 'prjaquota', 'sqs.new', 'check_license.sh', 'susw', 'xcmap', 'gen_nodelist.sh', 'svnlook', 'esl.sh', 'fixdots', 'home_over', 'check-hybrid.gnu.cori', 'hpss_file_sorter.py~', 'nc', 'stripe_small.backup', 'static_linking_ddt_md_th', 'swcats', 'nedit', 'check-hybrid.cce.cori', 'iris', 'stripe_small', 'dotmgr', 'hold_prjquota', 'home_usage', 'mynersc_wrappers', 'static_linking_ddt_md', 'wheres_my_job.py.bak', 'module_restore.sh', 'tape_order', 'tedi', 'ndots', 'nersc_host', 'cfsquota', 'not_used', 'run-and-watch.sh', 'generate_sorted_list_for_hpss.py', 'cmark', 'findtouch'] ['hsi', 'ftp', 'wfile', '.pftp_client_73', 'obins', '.htar.exe', '.hsi.exe', 'mkhpsstok', 'htar', 'hpss_avail', 'hsi_testcos', 'pftp'] Warning accessing /usr/common/nsg/bin gives errors: [Errno 2] No such file or directory: '/usr/common/nsg/bin' ['envldms.sh', 'ldms-csv-anonymize', 'ldms-csv-export-sos', 'ldms-l2_test.sh', 'ldms-meminfo.sh', 'ldms-pedigree', 'ldms-plugins.sh', 'ldms-py-rename.sh', 'ldms-py-subset_test.sh', 'ldms-py-syslog.sh', 'ldms-py-varset.sh', 'ldms-static-test.sh', 'ldms_ban.sh', 'ldms_local_opa2test.sh', 'ldmsd_controller', 'lmq', 'lsdate', 'ods_dump', 'sos-db', 'sos-import-csv', 'sos-monitor', 'sos-part', 'sos-schema', 'sos_cmd', 'sos_part_create', 'sos_part_delete', 'sos_part_export', 'sos_part_index', 'sos_part_modify', 'sos_part_move', 'sos_part_query'] ['.ldms-wrapper', 'json_test', 'ldms-aggd', 'ldms_ls', 'ldmsaggctl', 'ldmsctl', 'ldmsd', 'ldmsd_sos_init', 'ldmsd_stream_publish', 'ldmsd_stream_subscribe'] ['add.modules', 'mkroot', 'modulecmd'] [] ['.hmac256.hmac', '411toppm', 'BackGround', 'Backarrow2BackSpace', 'Backarrow2Delete', 'Mail', 'Signature_conversion', 'WebKitWebDriver', 'X', 'X11', 'Xdmx', 'Xephyr', 'Xnest', 'Xorg', 'Xvfb', 'Xvnc', '[', 'a4toa5', 'ac', 'aclocal', 'aclocal-1.15', 'aconnect', 'acpi_validate', 'acpibin', 'acpiexamples', 'acpiexec', 'acpihelp', 'acpinames', 'acpisrc', 'acpixtract', 'activation-client', 'addr2line', 'affixcompress', 'afs5log', 'agentxtrap', 'all_notes_off', 'allcm', 'allec', 'allneeded', 'alsaloop', 'alsamixer', 'alsatplg', 'alsaucm', 'amidi', 'amixer', 'amuFormat.sh', 'analyze', 'annotate', 'ansible', 'ansible-doc', 'ansible-galaxy', 'ansible-playbook', 'ansible-pull', 'ansible-vault', 'ant', 'antRun', 'antlr', 'antlr-config', 'anytopnm', 'aplay', 'aplaymidi', 'appdata2solv', 'applydeltaiso', 'applydeltarpm', 'apropos', 'ar', 'arch', 'arecord', 'arecordmidi', 'arpaname', 'as', 'asciitopgm', 'aseqdump', 'aseqnet', 'asn1Coding', 'asn1Decoding', 'asn1Parser', 'at', 'atktopbm', 'atq', 'atrm', 'attr', 'audit2allow', 'audit2why', 'aulast', 'aulastlog', 'ausyscall', 'autoconf', 'autoexpect', 'autoheader', 'autom4te', 'automake', 'automake-1.15', 'autopoint', 'autoreconf', 'autoscan', 'autoupdate', 'auvirt', 'avstopam', 'awk', 'b2sum', 'base32', 'base64', 'basename', 'bashbug', 'batch', 'bbox', 'bc', 'bdftogd', 'bdftruncate', 'bgp_btoa', 'bibtex', 'binhex.pl', 'bioradtopgm', 'bison', 'blkiomon', 'blkrawverify', 'bmptopnm', 'bmptoppm', 'bno_plot.py', 'bonnie', 'bonobo-activation-run-query', 'bonobo-slay', 'bootctl', 'broadwayd', 'brushtopbm', 'btrecord', 'btreplay', 'btt', 'build-classpath', 'build-classpath-directory', 'build-jar-repository', 'bunzip2', 'busctl', 'busybox', 'busybox.install', 'bwrap', 'bzcat', 'bzcmp', 'bzdiff', 'bzegrep', 'bzfgrep', 'bzgrep', 'bzip2', 'bzip2recover', 'bzless', 'bzmore', 'bznew', 'c++', 'c++filt', 'c3270', 'c_rehash', 'cal', 'call-browser', 'callgrind_annotate', 'callgrind_control', 'cameratopam', 'cancel', 'capinfos', 'captoinfo', 'captype', 'card_eventmgr', 'cardos-tool', 'cat', 'catchsegv', 'catman', 'cc', 'ccmake', 'ccmakedep', 'certtool', 'cg_annotate', 'cg_diff', 'cg_merge', 'chacl', 'chage', 'chardetect', 'chardetect-2.7', 'chardetect-3.6', 'chattr', 'chcat', 'chcon', 'check-binary-files', 'checkmodule', 'checkpolicy', 'chfn', 'chgrp', 'chkconfig', 'chkstat', 'chmem', 'chmod', 'chmorph', 'chooser', 'chown', 'chronyc', 'chroot', 'chrp-addnote', 'chrt', 'chsh', 'chvt', 'ci', 'cifscreds', 'cifsdd', 'cifsiostat', 'cistopbm', 'cksum', 'clamav-config', 'clambc', 'clamconf', 'clamdscan', 'clamdtop', 'clamscan', 'clean-binary-files', 'cleanlinks', 'clear', 'clrunimap', 'clusterdb', 'cmake', 'cmp', 'cmuwmtopbm', 'cnf', 'co', 'col', 'colcrt', 'colrm', 'column', 'combinedeltarpm', 'comm', 'command-not-found', 'compile_et', 'comps2solv', 'convmv', 'corelist', 'cp', 'cpack', 'cpan', 'cpio', 'cpp', 'cpp-7', 'cpupcstat', 'cpupower', 'cray-nvidia-acct', 'cray-nvidia-energy', 'cray-xid-logger', 'crc32', 'create-jar-links', 'createdb', 'createrepo', 'createrepo_c', 'createuser', 'crontab', 'cryptdir', 'cryptoflex-tool', 'csh', 'csplit', 'ctags', 'ctags-exuberant', 'ctest', 'cups-config', 'cupstestdsc', 'cupstestppd', 'curl', 'curl-config', 'cut', 'cvs', 'cvsbug', 'cvslock', 'cvt', 'cyrus_sasl_sample_client', 'cyrus_sasl_sample_server', 'dasher', 'date', 'db48_archive', 'db48_checkpoint', 'db48_deadlock', 'db48_dump', 'db48_hotbackup', 'db48_load', 'db48_printlog', 'db48_recover', 'db48_sql', 'db48_stat', 'db48_upgrade', 'db48_verify', 'db_archive', 'db_checkpoint', 'db_deadlock', 'db_dump', 'db_hotbackup', 'db_load', 'db_printlog', 'db_recover', 'db_sql', 'db_stat', 'db_upgrade', 'db_verify', 'dbilogstrip', 'dbiprof', 'dbiproxy', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-launch', 'dbus-launch.nox11', 'dbus-launch.x11', 'dbus-monitor', 'dbus-run-session', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dbwrap_tool', 'dc', 'dconf', 'dd', 'dd_rescue', 'ddbugtopbm', 'deallocvt', 'debinhex.pl', 'decryptdir', 'deltainfoxml2solv', 'delv', 'desktop-file-edit', 'desktop-file-install', 'desktop-file-validate', 'desktop-launch', 'devdump', 'df', 'dialog', 'diff', 'diff-jars', 'diff3', 'diffpp', 'dig', 'dir', 'dircolors', 'dirmngr', 'dirmngr-client', 'dirmngr_ldap', 'dirname', 'disable-paste', 'dislocate', 'display-buttons', 'display-coords', 'dkimsign.pl', 'dkimverify.pl', 'dltest', 'dm_date', 'dm_zdump', 'dmesg', 'dmxaddinput', 'dmxaddscreen', 'dmxinfo', 'dmxreconfig', 'dmxresize', 'dmxrminput', 'dmxrmscreen', 'dmxtodmx', 'dmxwininfo', 'dnie-tool', 'dnsdomainname', 'domainname', 'dos2unix', 'doxygen', 'dracut', 'driverless', 'dropdb', 'dropuser', 'drpmsync', 'dtrace', 'du', 'dump2psl.pl', 'dump2slvl.pl', 'dumpcap', 'dumpkeys', 'dumpsexp', 'dumpsolv', 'dvi2fax', 'dviasm', 'dvibook', 'dviconcat', 'dvidvi', 'dvigif', 'dvilualatex', 'dviluatex', 'dvipdf', 'dvipng', 'dvired', 'dviselect', 'dvisvgm', 'dvitodvi', 'dwp', 'dwz', 'easy_install', 'easy_install-2.7', 'ebrowse', 'echo', 'echo-client-2', 'ecpg', 'ed', 'edit', 'edit-xml-catalog', 'edit-xml-catalog.sh', 'editcap', 'egk-tool', 'egrep', 'egview', 'egvim', 'eidenv', 'eject', 'elfedit', 'emacs', 'emacs-gtk', 'emacs-x11', 'emacsclient', 'embedspu', 'enc2xs', 'encguess', 'encode_keychange', 'enscript', 'enscript.bin', 'env', 'envsubst', 'eog', 'eps2eps', 'epsffit', 'eqn', 'erb', 'erb.ruby2.5', 'escp2topbm', 'espeak', 'etags', 'etex', 'eu-addr2line', 'eu-ar', 'eu-elfcmp', 'eu-elfcompress', 'eu-elflint', 'eu-findtextrel', 'eu-make-debug-archive', 'eu-nm', 'eu-objdump', 'eu-ranlib', 'eu-readelf', 'eu-size', 'eu-stack', 'eu-strings', 'eu-strip', 'eu-unstrip', 'eventlogadm', 'eview', 'evim', 'evince', 'evince-previewer', 'evince-thumbnailer', 'ex', 'expand', 'expect', 'expiry', 'expr', 'extlinux', 'extractres', 'eyuvtoppm', 'f2py', 'f2py2', 'f2py2.7', 'f2py3', 'f2py3.6', 'factor', 'fallocate', 'false', 'fastjar', 'fc-cache', 'fc-cache32', 'fc-cat', 'fc-cat32', 'fc-list', 'fc-list32', 'fc-match', 'fc-match32', 'fc-pattern', 'fc-query', 'fc-scan', 'fc-validate', 'fdupes', 'fetchmail', 'fgconsole', 'fgrep', 'fiascotopnm', 'file', 'file-roller', 'filesize', 'fillup', 'fincore', 'find', 'find-jar', 'findmnt', 'findsmb', 'fips_standalone_hmac', 'fitstopnm', 'fixdlsrps', 'fixfmps', 'fixmacps', 'fixproc', 'fixpsditps', 'fixpspps', 'fixscribeps', 'fixtpps', 'fixwfwps', 'fixwpps', 'fixwwps', 'fiz', 'flask-2.7', 'flex', 'flex++', 'flock', 'fmt', 'fmtutil', 'fmtutil-sys', 'fmtutil-user', 'fold', 'foomatic-rip', 'formail', 'fragiso', 'free', 'freetype-config', 'freshclam', 'fribidi', 'fsfs-access-map', 'fstopgm', 'ftp', 'ftp-rfc', 'funzip', 'funzip-plain', 'fuser', 'fusermount', 'g++', 'g++-7', 'g-ir-annotation-tool', 'g-ir-compiler', 'g-ir-doc-tool', 'g-ir-generate', 'g-ir-inspect', 'g-ir-scanner', 'g13', 'g2r', 'gapplication', 'gawk', 'gcc', 'gcc-7', 'gcc-ar', 'gcc-ar-7', 'gcc-nm', 'gcc-nm-7', 'gcc-ranlib', 'gcc-ranlib-7', 'gccmakedep', 'gconf-editor', 'gconf-merge-tree', 'gconftool-2', 'gconftool-rebuild', 'gcore', 'gcov', 'gcov-7', 'gcov-dump', 'gcov-dump-7', 'gcov-tool', 'gcov-tool-7', 'gd2copypal', 'gd2togif', 'gd2topng', 'gdb', 'gdb-add-index', 'gdbm_dump', 'gdbm_load', 'gdbmtool', 'gdbserver', 'gdbus', 'gdbus-codegen', 'gdcmpgif', 'gdialog', 'gdk-pixbuf-csource', 'gdk-pixbuf-pixdata', 'gdk-pixbuf-query-loaders-64', 'gdm', 'gdm-screenshot', 'gdmflexiserver', 'gdparttopng', 'gdtopng', 'gedi', 'gedit', 'gem', 'gem.ruby2.5', 'gem2rpm', 'gem2rpm-0.10.1', 'gem2rpm.ruby2.5', 'gem2rpm.ruby2.5-0.10.1', 'gemtopbm', 'gemtopnm', 'genDDNSkey', 'gencat', 'gendiff', 'genscript', 'geqn', 'get-versions', 'get_kernel_version', 'getafm', 'getcifsacl', 'getconf', 'getdelays', 'getent', 'getfacl', 'getfattr', 'gethostip', 'getkeycodes', 'getopt', 'gettext', 'gettext.sh', 'gettextize', 'getunimap', 'gex', 'gids-tool', 'giftogd2', 'giftopnm', 'gio', 'gio-querymodules-64', 'git', 'git-new-workdir', 'git-receive-pack', 'git-shell', 'git-upload-archive', 'git-upload-pack', 'git_version.tcl', 'gkbd-keyboard-display', 'glib-compile-resources', 'glib-compile-schemas', 'glib-genmarshal', 'glib-gettextize', 'glib-mkenums', 'gmake', 'gnome', 'gnome-control-center', 'gnome-help', 'gnome-keyring', 'gnome-keyring-3', 'gnome-keyring-daemon', 'gnome-open', 'gnome-session', 'gnome-session-inhibit', 'gnome-session-quit', 'gnome-shell', 'gnome-shell-extension-prefs', 'gnome-terminal', 'gnome-text-editor', 'gnomesu', 'gnomevfs-cat', 'gnomevfs-copy', 'gnomevfs-df', 'gnomevfs-info', 'gnomevfs-ls', 'gnomevfs-mkdir', 'gnomevfs-monitor', 'gnomevfs-mv', 'gnomevfs-rm', 'gnuctags', 'gnuplot', 'gnutls-cli', 'gnutls-cli-debug', 'gnutls-serv', 'gobject-query', 'gouldtoppm', 'gpasswd', 'gpg', 'gpg-agent', 'gpg-connect-agent', 'gpg-error', 'gpg-error-config', 'gpg-wks-server', 'gpg-zip', 'gpg2', 'gpgconf', 'gpgme-tool', 'gpgparsemail', 'gpgrt-config', 'gpgscm', 'gpgsm', 'gpgtar', 'gpgv', 'gpgv2', 'gpm-root', 'gprof', 'grep', 'grepjar', 'gresource', 'groff', 'grog', 'grops', 'grotty', 'groups', 'gs', 'gsbj', 'gsdj', 'gsdj500', 'gsettings', 'gsettings-data-convert', 'gsftopk', 'gslj', 'gslp', 'gsnd', 'gst-device-monitor-1.0', 'gst-discoverer-1.0', 'gst-play-1.0', 'gstack', 'gtbl', 'gtester', 'gtester-report', 'gtf', 'gtk-builder-convert', 'gtk-builder-tool', 'gtk-demo', 'gtk-encode-symbolic-svg', 'gtk-launch', 'gtk-query-immodules-2.0-64', 'gtk-query-immodules-3.0-64', 'gtk-query-settings', 'gtk-update-icon-cache', 'gtk-update-icon-cache-2.0', 'gtk-update-icon-cache-3.0', 'gtk3-demo', 'gtk3-demo-application', 'gtk3-icon-browser', 'gtk3-widget-factory', 'guess_encoding', 'guild', 'guile', 'guile-tools', 'gunicorn', 'gunicorn-2.7', 'gunicorn_paster', 'gunicorn_paster-2.7', 'gunzip', 'gv', 'gv-update-userconfig', 'gvfs-cat', 'gvfs-copy', 'gvfs-info', 'gvfs-less', 'gvfs-ls', 'gvfs-mime', 'gvfs-mkdir', 'gvfs-monitor-dir', 'gvfs-monitor-file', 'gvfs-mount', 'gvfs-move', 'gvfs-open', 'gvfs-rename', 'gvfs-rm', 'gvfs-save', 'gvfs-set-attribute', 'gvfs-trash', 'gvfs-tree', 'gvi', 'gview', 'gvim', 'gvimdiff', 'gvimtutor', 'gzexe', 'gzip', 'h2ph', 'h2xs', 'hardlink', 'hattrib', 'hcd', 'hcopy', 'hdel', 'hdifftopam', 'hdir', 'hdisk.pl', 'head', 'hexdump', 'hformat', 'hipstopgm', 'hls', 'hltest', 'hmac256', 'hmkdir', 'hmount', 'host', 'hostid', 'hostname', 'hostnamectl', 'hpwd', 'hrename', 'hrmdir', 'hugeadm', 'hugectl', 'hugeedit', 'humount', 'hunspell', 'hunzip', 'hvol', 'hwloc-annotate', 'hwloc-assembler', 'hwloc-assembler-remote', 'hwloc-bind', 'hwloc-calc', 'hwloc-compress-dir', 'hwloc-diff', 'hwloc-distances', 'hwloc-distrib', 'hwloc-gather-topology', 'hwloc-info', 'hwloc-ls', 'hwloc-patch', 'hwloc-ps', 'hzip', 'i386', 'iasecc-tool', 'iasl', 'ib_atomic_bw', 'ib_atomic_lat', 'ib_read_bw', 'ib_read_lat', 'ib_send_bw', 'ib_send_lat', 'ib_write_bw', 'ib_write_lat', 'ibdiagnet', 'ibdiagpath', 'ibdmchk', 'ibdmsh', 'ibdmtr', 'ibis', 'ibnlparse', 'ibtopodiff', 'iceauth', 'icesh', 'icesh-lite', 'icewm', 'icewm-lite', 'icewm-session', 'icewm-session-lite', 'icewmbg', 'icewmbg-lite', 'icewmhint', 'icewmhint-lite', 'icontopbm', 'iconv', 'icu-config', 'id', 'ident', 'idl2wrs', 'iecset', 'ifconfig', 'ifnames', 'ilbmtoppm', 'imake', 'imgtoppm', 'includeres', 'info', 'infocmp', 'infotocap', 'infotopam', 'initdb', 'initex', 'initviocons', 'install', 'install-catalog', 'install-catalog.sh', 'install-dtd.sh', 'install-info', 'installation_sources', 'installcheck', 'instmodsh', 'ionice', 'iostat', 'iowatcher', 'ipcmk', 'ipcount', 'ipcrm', 'ipcs', 'ipf-mod.pl', 'ipmitool', 'ippfind', 'ipptool', 'iptab', 'irb', 'irb.ruby2.5', 'isodebug', 'isodump', 'isohybrid', 'isohybrid.pl', 'isoinfo', 'isolinux-config', 'isosize', 'isovfy', 'ispellaff2myspell', 'isql', 'iusql', 'jar', 'jarsigner', 'java', 'javac', 'javadoc', 'javap', 'jbigtopnm', 'jcmd', 'jconsole', 'jdb', 'jdeprscan', 'jdeps', 'jhsdb', 'jimage', 'jinfo', 'jjs', 'jlink', 'jmap', 'jmod', 'join', 'journalctl', 'jpeg2ktopam', 'jpegtopnm', 'jps', 'jq', 'jrunscript', 'jshell', 'json_pp', 'jstack', 'jstat', 'jstatd', 'kbd', 'kbd_mode', 'kbdinfo', 'kbdrate', 'kbxutil', 'kdumpid', 'kernel-install', 'keyctl', 'keygen', 'keytab-lilo', 'keytool', 'kibitz', 'kill', 'killall', 'kinit', 'klist', 'kmod', 'kmp-install', 'koi8rxterm', 'kpseaccess', 'kpsepath', 'kpsereadlink', 'kpsestat', 'kpsetool', 'kpsewhere', 'kpsewhich', 'kpsexpand', 'ksh', 'lacheck', 'last', 'lastb', 'lastcomm', 'lastlog', 'latex', 'ld', 'ld.bfd', 'ldapadd', 'ldapcompare', 'ldapdelete', 'ldapexop', 'ldapmodify', 'ldapmodrdn', 'ldappasswd', 'ldapsearch', 'ldapurl', 'ldapwhoami', 'ldd', 'leaftoppm', 'less', 'lessclose.sh', 'lessecho', 'lesskey', 'lessopen.sh', 'lex', 'lexgrog', 'lfs', 'lfs_migrate', 'lftp', 'lftp_wrapper', 'lftpget', 'libgcrypt-config', 'libnetcfg', 'libpng-config', 'libpng16-config', 'libtool', 'libtoolize', 'linc-cleanup-sockets', 'line', 'link', 'linux32', 'linux64', 'lispmtopgm', 'lksh', 'ln', 'lndir', 'lnstat', 'loadkeys', 'loadmof.sh', 'loadunimap', 'locale', 'localectl', 'localedef', 'locate', 'lockfile', 'logger', 'loginctl', 'logname', 'lognormalizer', 'look', 'lp', 'lpoptions', 'lpq', 'lpr', 'lprm', 'lprsetup.sh', 'lpstat', 'lpunlock', 'ls', 'lsar', 'lsattr', 'lsb-release', 'lsb_release', 'lsblk', 'lscpu', 'lsdev', 'lsinitrd', 'lsipc', 'lslocks', 'lslogins', 'lsmem', 'lsmod', 'lsns', 'lsof', 'lss16toppm', 'lsscsi', 'lstopo', 'lstopo-no-graphics', 'lsusb', 'lsusb.py', 'ltrace', 'lua', 'lua5.3', 'luac', 'luac5.3', 'luajittex', 'lualatex', 'luaotfload-tool', 'luatex', 'luit', 'luitx', 'lwp-download', 'lwp-dump', 'lwp-mirror', 'lwp-request', 'lz', 'lz4', 'lz4c', 'lz4cat', 'lzcat', 'lzcmp', 'lzdiff', 'lzegrep', 'lzfgrep', 'lzgrep', 'lzless', 'lzma', 'lzmadec', 'lzmainfo', 'lzmore', 'm17n-db', 'm4', 'mac2unix', 'macptopbm', 'mail', 'mailq', 'mailstat', 'mailx', 'make', 'make_method', 'makealias', 'makedeltaiso', 'makedeltarpm', 'makedepend', 'makedumpfile', 'makedumpfile-R.pl', 'makeg', 'makeindex', 'makeinfo', 'man', 'mandb', 'manpath', 'manweb', 'mapscrn', 'mariadb_config', 'mattrib', 'mbadblocks', 'mcat', 'mcd', 'mcheck', 'mclasserase', 'mcomp', 'mcookie', 'mcopy', 'md5pass', 'md5sum', 'mdatopbm', 'mdel', 'mdeltree', 'mdig', 'mdir', 'mdu', 'memdiskfind', 'memhog', 'memkind-hbw-nodes', 'merge', 'merge-pciids', 'mergecap', 'mergelib', 'mergerepo', 'mergerepo_c', 'mergesolv', 'mesg', 'mev', 'mformat', 'mgrtopbm', 'migratepages', 'migspeed', 'minfo', 'mk_cmds', 'mkafmmap', 'mkdir', 'mkdirhier', 'mkdiskimage', 'mkfifo', 'mkfontdir', 'mkfontscale', 'mkhtmlindex', 'mkhybrid', 'mkindex', 'mkinfodir', 'mkisofs', 'mkmanifest', 'mknod', 'mkocp', 'mkofm', 'mkpasswd', 'mksh', 'mksquashfs', 'mktemp', 'mktexfmt', 'mktexlsr', 'mktexmf', 'mktexpk', 'mktextfm', 'mkzftree', 'mkzimage_cmdline', 'mlabel', 'mmd', 'mmdbresolve', 'mmount', 'mmove', 'mmroff', 'modhash', 'modifyrepo', 'modifyrepo_c', 'modsign-verify', 'mof_compiler', 'mof_compiler-2.7', 'mof_compiler-3.6', 'more', 'mount', 'mountpoint', 'mouse-test', 'mpartition', 'mpi-selector', 'mpi-selector-menu', 'mpicalc', 'mpstat', 'mrd', 'mren', 'mrftopbm', 'ms_print', 'msgattrib', 'msgcat', 'msgcmp', 'msgcomm', 'msgconv', 'msgen', 'msgexec', 'msgfilter', 'msgfmt', 'msggrep', 'msginit', 'msgmerge', 'msgunfmt', 'msguniq', 'mshortname', 'mshowfat', 'mstconfig', 'mstflint', 'mstfwreset', 'mstmcra', 'mstmread', 'mstmtserver', 'mstmwrite', 'mstregdump', 'mstvpd', 'mtools', 'mtoolstest', 'mtvtoppm', 'mtype', 'multixterm', 'munch', 'munge', 'mutt', 'mutter', 'mv', 'mvxattr', 'mxtar', 'mydvichk', 'myquota', 'mysql', 'mysql_config', 'mysqladmin', 'mysqlcheck', 'mysqld_safe_helper', 'mysqldump', 'mysqlimport', 'mysqlshow', 'mzip', 'namei', 'nc', 'ncurses6-config', 'ncursesw6-config', 'neotoppm', 'neqn', 'net', 'net-server', 'net-snmp-cert', 'net-snmp-config', 'net-snmp-create-v3-user', 'netaddr-2.7', 'netcat', 'netkey-tool', 'netstat', 'newaliases', 'newgidmap', 'newgrp', 'newuidmap', 'ngettext', 'nice', 'nisdomainname', 'nl', 'nm', 'nmap', 'nmblookup', 'nmbstatus', 'nohup', 'notify-send', 'npa-tool', 'nproc', 'nroff', 'nsenter', 'nslookup', 'nstat', 'nsupdate', 'ntlm_auth', 'numactl', 'numademo', 'numastat', 'numfmt', 'nvidia-bug-report.sh', 'nvidia-cuda-mps-control', 'nvidia-cuda-mps-server', 'nvidia-debugdump', 'nvidia-persistenced', 'nvidia-settings', 'nvidia-smi', 'nvidia-xconfig', 'oLschema2ldif', 'objcopy', 'objdump', 'oci-image-tool', 'ocount', 'ocsptool', 'od', 'odbc_config', 'odbcinst', 'odd2even', 'ofl', 'oid2name', 'old', 'op-check-perfevents', 'opannotate', 'oparchive', 'openpgp-tool', 'opensc-asn1', 'opensc-explorer', 'opensc-notify', 'opensc-tool', 'openssl', 'openvt', 'operf', 'opgprof', 'ophelp', 'opimport', 'opjitconv', 'opreport', 'oprofile_map_events.pl', 'oprofile_start.sh', 'outpsfheader', 'over', 'p11-kit', 'p11tool', 'pack200', 'pagesize', 'palmtopnm', 'pamaddnoise', 'pamarith', 'pambackground', 'pambayer', 'pamchannel', 'pamcomp', 'pamcrater', 'pamcut', 'pamdeinterlace', 'pamdepth', 'pamdice', 'pamditherbw', 'pamedge', 'pamendian', 'pamenlarge', 'pamexec', 'pamfile', 'pamfix', 'pamfixtrunc', 'pamflip', 'pamfunc', 'pamgauss', 'pamgradient', 'pamlookup', 'pammasksharpen', 'pammixinterlace', 'pammosaicknit', 'pamoil', 'pampaintspill', 'pamperspective', 'pampick', 'pampop9', 'pamrecolor', 'pamrgbatopng', 'pamrubber', 'pamscale', 'pamseq', 'pamshadedrelief', 'pamsharpmap', 'pamsharpness', 'pamsistoaglyph', 'pamslice', 'pamsplit', 'pamstack', 'pamstereogram', 'pamstretch', 'pamstretch-gen', 'pamsumm', 'pamsummcol', 'pamtable', 'pamthreshold', 'pamtilt', 'pamtoavs', 'pamtodjvurle', 'pamtofits', 'pamtogif', 'pamtohdiff', 'pamtohtmltbl', 'pamtojpeg2k', 'pamtompfont', 'pamtooctaveimg', 'pamtopam', 'pamtopdbimg', 'pamtopfm', 'pamtopng', 'pamtopnm', 'pamtosrf', 'pamtosvg', 'pamtotga', 'pamtotiff', 'pamtouil', 'pamtowinicon', 'pamtoxvmini', 'pamundice', 'pamunlookup', 'pamvalidate', 'pamwipeout', 'pamx', 'parse-sgml-catalog.sh', 'passmass', 'passwd', 'paste', 'patch', 'pathchk', 'pax', 'pbmclean', 'pbmlife', 'pbmmake', 'pbmmask', 'pbmminkowski', 'pbmpage', 'pbmpscale', 'pbmreduce', 'pbmtext', 'pbmtextps', 'pbmto10x', 'pbmto4425', 'pbmtoascii', 'pbmtoatk', 'pbmtobbnbg', 'pbmtocis', 'pbmtocmuwm', 'pbmtodjvurle', 'pbmtoepsi', 'pbmtoepson', 'pbmtoescp2', 'pbmtog3', 'pbmtogem', 'pbmtogo', 'pbmtoibm23xx', 'pbmtoicon', 'pbmtolj', 'pbmtoln03', 'pbmtolps', 'pbmtomacp', 'pbmtomatrixorbital', 'pbmtomda', 'pbmtomgr', 'pbmtomrf', 'pbmtonokia', 'pbmtopgm', 'pbmtopi3', 'pbmtopk', 'pbmtoplot', 'pbmtoppa', 'pbmtopsg3', 'pbmtoptx', 'pbmtosunicon', 'pbmtowbmp', 'pbmtox10bm', 'pbmtoxbm', 'pbmtoybm', 'pbmtozinc', 'pbmupc', 'pc1toppm', 'pcre-config', 'pcre2-config', 'pcregrep', 'pcretest', 'pcxtoppm', 'pdbedit', 'pdbimgtopam', 'pdf2dsc', 'pdf2ps', 'pdfdetach', 'pdfetex', 'pdffonts', 'pdfimages', 'pdfinfo', 'pdflatex', 'pdfseparate', 'pdfsig', 'pdftex', 'pdftexi2dvi', 'pdftocairo', 'pdftohtml', 'pdftoppm', 'pdftops', 'pdftotext', 'pdfunite', 'pdksh', 'peekfd', 'perf', 'perl', 'perl5.26.1', 'perlbug', 'perldoc', 'perlivp', 'perlthanks', 'pf2afm', 'pfbtopfa', 'pfmtopam', 'pg_archivecleanup', 'pg_basebackup', 'pg_config', 'pg_controldata', 'pg_ctl', 'pg_dump', 'pg_dumpall', 'pg_isready', 'pg_receivewal', 'pg_recvlogical', 'pg_resetwal', 'pg_restore', 'pg_rewind', 'pg_standby', 'pg_test_fsync', 'pg_test_timing', 'pg_upgrade', 'pg_waldump', 'pgbench', 'pgmabel', 'pgmbentley', 'pgmcrater', 'pgmdeshadow', 'pgmedge', 'pgmenhance', 'pgmhist', 'pgmkernel', 'pgmmake', 'pgmmedian', 'pgmminkowski', 'pgmmorphconv', 'pgmnoise', 'pgmnorm', 'pgmoil', 'pgmramp', 'pgmslice', 'pgmtexture', 'pgmtofs', 'pgmtolispm', 'pgmtopbm', 'pgmtopgm', 'pgmtoppm', 'pgmtosbig', 'pgmtost4', 'pgpewrap', 'pgpring', 'pgrep', 'pi1toppm', 'pi3topbm', 'pic', 'piconv', 'pidstat', 'pigz', 'pinentry', 'pinentry-curses', 'pinentry-tty', 'ping', 'ping6', 'pinky', 'piv-tool', 'pjtoppm', 'pkaction', 'pkcheck', 'pkcs11-tool', 'pkcs11_eventmgr', 'pkcs11_inspect', 'pkcs11_listcerts', 'pkcs11_make_hash_link', 'pkcs11_setup', 'pkcs15-crypt', 'pkcs15-init', 'pkcs15-tool', 'pkexec', 'pkg-config', 'pki', 'pkill', 'pklogin_finder', 'pktopbm', 'pkttyagent', 'pl2pm', 'pmap', 'pngtogd', 'pngtogd2', 'pngtopam', 'pngtopnm', 'pnmalias', 'pnmarith', 'pnmcat', 'pnmcolormap', 'pnmcomp', 'pnmconvol', 'pnmcrop', 'pnmcut', 'pnmdepth', 'pnmenlarge', 'pnmfile', 'pnmflip', 'pnmgamma', 'pnmhisteq', 'pnmhistmap', 'pnmindex', 'pnminterp', 'pnminvert', 'pnmmargin', 'pnmmercator', 'pnmmontage', 'pnmnlfilt', 'pnmnoraw', 'pnmnorm', 'pnmpad', 'pnmpaste', 'pnmpsnr', 'pnmquant', 'pnmquantall', 'pnmremap', 'pnmrotate', 'pnmscale', 'pnmscalefixed', 'pnmshear', 'pnmsmooth', 'pnmsplit', 'pnmstitch', 'pnmtile', 'pnmtoddif', 'pnmtofiasco', 'pnmtofits', 'pnmtojbig', 'pnmtojpeg', 'pnmtopalm', 'pnmtopclxl', 'pnmtoplainpnm', 'pnmtopng', 'pnmtopnm', 'pnmtops', 'pnmtorast', 'pnmtorle', 'pnmtosgi', 'pnmtosir', 'pnmtotiff', 'pnmtotiffcmyk', 'pnmtoxwd', 'pod2html', 'pod2man', 'pod2texi', 'pod2text', 'pod2usage', 'pod_cover', 'podchecker', 'podselect', 'postgres', 'postmaster', 'pphs', 'ppm3d', 'ppmbrighten', 'ppmchange', 'ppmcie', 'ppmcolormask', 'ppmcolors', 'ppmdcfont', 'ppmddumpfont', 'ppmdim', 'ppmdist', 'ppmdither', 'ppmdmkfont', 'ppmdraw', 'ppmfade', 'ppmflash', 'ppmforge', 'ppmglobe', 'ppmhist', 'ppmlabel', 'ppmmake', 'ppmmix', 'ppmnorm', 'ppmntsc', 'ppmpat', 'ppmquant', 'ppmquantall', 'ppmrainbow', 'ppmrelief', 'ppmrough', 'ppmshadow', 'ppmshift', 'ppmspread', 'ppmtoacad', 'ppmtoapplevol', 'ppmtoarbtxt', 'ppmtoascii', 'ppmtobmp', 'ppmtoeyuv', 'ppmtogif', 'ppmtoicr', 'ppmtoilbm', 'ppmtojpeg', 'ppmtoleaf', 'ppmtolj', 'ppmtolss16', 'ppmtomap', 'ppmtomitsu', 'ppmtoneo', 'ppmtopcx', 'ppmtopgm', 'ppmtopi1', 'ppmtopict', 'ppmtopj', 'ppmtopjxl', 'ppmtoppm', 'ppmtopuzz', 'ppmtorgb3', 'ppmtosixel', 'ppmtospu', 'ppmtoterm', 'ppmtotga', 'ppmtouil', 'ppmtowinicon', 'ppmtoxpm', 'ppmtoyuv', 'ppmtoyuvsplit', 'ppmtv', 'ppmwheel', 'pr', 'pr3287', 'prctl', 'preconv', 'printafm', 'printenv', 'printf', 'prjaquota', 'prjquota', 'prlimit', 'procinfo', 'procmail', 'profiles', 'protoc', 'prove', 'prtstat', 'ps', 'ps2ascii', 'ps2eps', 'ps2epsi', 'ps2frag', 'ps2pdf', 'ps2pdf12', 'ps2pdf13', 'ps2pdf14', 'ps2pdfwr', 'ps2ps', 'ps2ps2', 'psbook', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'psidtopgm', 'psktool', 'pslatex', 'pslog', 'psmerge', 'psnup', 'psql', 'psresize', 'psselect', 'pstops', 'pstree', 'pstree.x11', 'pt-tls-client', 'ptar', 'ptardiff', 'ptargrep', 'ptked', 'ptksh', 'ptx', 'purge', 'pwd', 'pwdx', 'pxelinux-options', 'pybabel', 'pybabel-2.7', 'pydoc', 'pydoc3', 'pydoc3.6', 'python', 'python-config', 'python2', 'python2-config', 'python2.7', 'python2.7-config', 'python3', 'python3.6', 'python3.6m', 'pyvenv', 'pyvenv-3.6', 'pywbemcli', 'pywbemcli-2.7', 'pywbemcli-3.6', 'qperf', 'qrttoppm', 'quota', 'quotasync', 'rake', 'rake.ruby.ruby2.5', 'rake.ruby2.5', 'randpkt', 'ranlib', 'rasttopnm', 'raw_ethernet_burst_lat', 'raw_ethernet_bw', 'raw_ethernet_fs_rate', 'raw_ethernet_lat', 'rawshark', 'rawtopgm', 'rawtoppm', 'rbash', 'rcs', 'rcs2log', 'rcsclean', 'rcsdiff', 'rcsmerge', 'rdoc', 'rdoc.ruby.ruby2.5', 'rdoc.ruby2.5', 'rds-info', 'rds-ping', 'rds-stress', 're2c', 'readelf', 'readlink', 'realpath', 'rebuild-jar-repository', 'recode-sr-latin', 'red', 'regdiff', 'regpatch', 'regshell', 'regtree', 'reindexdb', 'remunge', 'rename', 'renice', 'reordercap', 'repo2solv', 'repo2solv.sh', 'repomdxml2solv', 'rescan-scsi-bus.sh', 'reset', 'resize', 'resizecons', 'rev', 'revpath', 'rftp', 'rgb3toppm', 'rgview', 'rgvim', 'ri', 'ri.ruby.ruby2.5', 'ri.ruby2.5', 'rlatopam', 'rletopnm', 'rlog', 'rlogin-cwd', 'rm', 'rmdir', 'rmic', 'rmid', 'rmiregistry', 'rmmof.sh', 'route', 'routef', 'routel', 'rpcclient', 'rpcgen', 'rpm', 'rpm2cpio', 'rpmbuild', 'rpmdb', 'rpmdb2solv', 'rpmgraph', 'rpmkeys', 'rpmlocate', 'rpmmd2solv', 'rpmqpack', 'rpmquery', 'rpms2solv', 'rpmsign', 'rpmspec', 'rpmverify', 'rrdcgi', 'rrdcreate', 'rrdinfo', 'rrdtool', 'rrdupdate', 'rsync', 'rsyncstats', 'ruby', 'ruby-find-versioned', 'ruby.ruby2.5', 'run_perftest_loopback', 'run_perftest_multi_devices', 'runcon', 'rview', 'rvim', 's3270', 'sa-awl', 'sa-check_spamd', 'sa-compile', 'sa-learn', 'sa-update', 'sacct', 'sacctmgr', 'sadf', 'safe-rm', 'safe-rmdir', 'salloc', 'samba-regedit', 'sandbox', 'sar', 'sattach', 'sbatch', 'sbcast', 'sbigtopgm', 'sc-hsm-tool', 'scancel', 'scdaemon', 'scons', 'scons-2.3.0', 'scons-time', 'scons-time-2.3.0', 'sconsign', 'sconsign-2.3.0', 'scontrol', 'scout', 'scp', 'screen', 'screendump', 'script', 'scriptreplay', 'scsi_logging_level', 'scsi_mandat', 'scsi_readcap', 'scsi_ready', 'scsi_satl', 'scsi_start', 'scsi_stop', 'scsi_temperature', 'sdiag', 'sdiff', 'secon', 'sed', 'sedismod', 'sedispol', 'semodule_deps', 'semodule_expand', 'semodule_link', 'semodule_package', 'semodule_unpackage', 'sensors', 'sensors-conf-convert', 'sepolgen-ifgen', 'sepolgen-ifgen-attr-helper', 'sepolicy', 'seq', 'serialver', 'sessreg', 'set_default_volume', 'setarch', 'setcifsacl', 'setfacl', 'setfattr', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setpriv', 'setserial', 'setsid', 'setterm', 'setvesablank', 'setvtrgb', 'setxkbmap', 'sfcbdump', 'sfcbinst2mof', 'sfcbmof', 'sfcbmofpp', 'sfcbproc', 'sfcbrepos', 'sfcbstage', 'sfcbtrace', 'sfcbunstage', 'sfcbuuid', 'sftp', 'sg', 'sg_bg_ctl', 'sg_compare_and_write', 'sg_copy_results', 'sg_dd', 'sg_decode_sense', 'sg_emc_trespass', 'sg_format', 'sg_get_config', 'sg_get_lba_status', 'sg_ident', 'sg_inq', 'sg_logs', 'sg_luns', 'sg_map', 'sg_map26', 'sg_modes', 'sg_opcodes', 'sg_persist', 'sg_prevent', 'sg_raw', 'sg_rbuf', 'sg_rdac', 'sg_read', 'sg_read_attr', 'sg_read_block_limits', 'sg_read_buffer', 'sg_read_long', 'sg_readcap', 'sg_reassign', 'sg_referrals', 'sg_rep_zones', 'sg_requests', 'sg_reset', 'sg_reset_wp', 'sg_rmsn', 'sg_rtpg', 'sg_safte', 'sg_sanitize', 'sg_sat_identify', 'sg_sat_phy_event', 'sg_sat_read_gplog', 'sg_sat_set_features', 'sg_scan', 'sg_seek', 'sg_senddiag', 'sg_ses', 'sg_ses_microcode', 'sg_start', 'sg_stpg', 'sg_stream_ctl', 'sg_sync', 'sg_test_rwbuf', 'sg_timestamp', 'sg_turs', 'sg_unmap', 'sg_verify', 'sg_vpd', 'sg_wr_mode', 'sg_write_buffer', 'sg_write_long', 'sg_write_same', 'sg_write_verify', 'sg_write_x', 'sg_xcopy', 'sg_zone', 'sgather', 'sginfo', 'sgitopnm', 'sgm_dd', 'sgml-register-catalog', 'sgml2xmlcat.sh', 'sgmlcat2x.sh', 'sgp_dd', 'sh', 'sha1pass', 'sha1sum', 'sha224sum', 'sha256sum', 'sha384sum', 'sha512sum', 'shade-jar', 'shar', 'sharesec', 'sharkd', 'shasum', 'shifter', 'shifterimg', 'showchar', 'showconsolefont', 'showkey', 'showrgb', 'shred', 'shuf', 'sigtool', 'simpdftex', 'sinfo', 'sirtopnm', 'size', 'skill', 'skopeo', 'slabtop', 'sldtoppm', 'sleep', 'slencheck', 'sliceprint', 'slptool', 'smbcacls', 'smbclient', 'smbcontrol', 'smbcquotas', 'smbget', 'smbinfo', 'smbpasswd', 'smbprngenpdf', 'smbspool', 'smbtar', 'smbtree', 'smicache', 'smidiff', 'smidump', 'smilint', 'smime_keys', 'smiquery', 'smistrip', 'smixlate', 'smtpd.py', 'snice', 'snmp-bridge-mib', 'snmpbulkget', 'snmpbulkwalk', 'snmpcheck', 'snmpconf', 'snmpdelta', 'snmpdf', 'snmpget', 'snmpgetnext', 'snmpinform', 'snmpkey', 'snmpnetstat', 'snmpset', 'snmpstatus', 'snmptable', 'snmptest', 'snmptls', 'snmptranslate', 'snmptrap', 'snmpusm', 'snmpvacm', 'snmpwalk', 'socklist', 'soelim', 'sort', 'spamassassin', 'spamc', 'spawn_console', 'spawn_login', 'spax', 'spctoppm', 'speaker-test', 'splain', 'split', 'spottopgm', 'sprio', 'sprof', 'sputoppm', 'sqlite3', 'sqlite3_analyzer', 'sqliterepo', 'sqliterepo_c', 'squeue', 'squidclient', 'sreport', 'srftopam', 'srptool', 'srun', 'ss', 'ssh', 'ssh-add', 'ssh-agent', 'ssh-copy-id', 'ssh-keygen', 'ssh-keyscan', 'sshare', 'sss_ssh_authorizedkeys', 'sss_ssh_knownhostsproxy', 'sstat', 'st4topgm', 'stap', 'stap-merge', 'stap-report', 'stapbpf', 'staprun', 'stapsh', 'star', 'startx', 'stat', 'states', 'stdbuf', 'stdlogctl', 'strace', 'strace-graph', 'strace-log-merge', 'strigger', 'strings', 'strip', 'stty', 'su', 'sum', 'sunicontopnm', 'suse-update-mime-defaults', 'susetags2solv', 'svgtopam', 'sview', 'svn', 'svn-bench', 'svn-populate-node-origins-index', 'svn_apply_autoprops.py', 'svnadmin', 'svnauthz', 'svnauthz-validate', 'svnbench', 'svndiff', 'svndumpfilter', 'svnfsfs', 'svngrep', 'svnlook', 'svnmucc', 'svnraisetreeconflict', 'svnrdump', 'svnserve', 'svnsync', 'svnversion', 'sync', 'syslinux', 'syslinux-mtools', 'syslinux2ansi', 'systemctl', 'systemd-analyze', 'systemd-ask-password', 'systemd-cat', 'systemd-cgls', 'systemd-cgtop', 'systemd-delta', 'systemd-detect-virt', 'systemd-escape', 'systemd-firstboot', 'systemd-hwdb', 'systemd-inhibit', 'systemd-machine-id-setup', 'systemd-mount', 'systemd-notify', 'systemd-path', 'systemd-run', 'systemd-socket-activate', 'systemd-stdio-bridge', 'systemd-sysusers', 'systemd-tmpfiles', 'systemd-tty-ask-password-agent', 'systemd-umount', 'systool', 'tabs', 'tac', 'tack', 'tail', 'tapestat', 'tar', 'targetcli', 'targetcli-3.6', 'targetctl', 'targetctl-3.6', 'tartest', 'taskset', 'tbl', 'tcl3270', 'tclsh', 'tclsh8.6', 'tcsh', 'tee', 'telnet', 'termprobes', 'test', 'test_igmpv3_join', 'testparm', 'testsaslauthd', 'testsolv', 'tethereal', 'tex', 'texconfig', 'texconfig-dialog', 'texconfig-sys', 'texhash', 'texi2any', 'texi2dvi', 'texi2pdf', 'texindex', 'texlinks', 'texlua', 'texluac', 'texluajit', 'texluajitc', 'text2pcap', 'tftp', 'tgatoppm', 'tgz', 'thinkjettopbm', 'thumbpdf', 'tic', 'tidy_changelog', 'tifftopnm', 'time', 'timed-read', 'timed-run', 'timedatectl', 'timeout', 'tkcon', 'tkjpeg', 'tkmib', 'tknewsbiff', 'tload', 'toe', 'top', 'touch', 'tpm_sealdata', 'tpm_unsealdata', 'tput', 'tr', 'trace', 'tracepath', 'tracepath6', 'traptoemail', 'tree', 'troff', 'true', 'truncate', 'trust', 'tset', 'tshark', 'tsort', 'tty', 'turbostat', 'tzselect', 'ucs2any', 'udevadm', 'uil', 'ul', 'ulockmgr_server', 'umoci', 'umount', 'uname', 'uname26', 'unar', 'unbuffer', 'uncompress', 'unexpand', 'unicode_start', 'unicode_stop', 'uniq', 'unix-lpr.sh', 'unix2dos', 'unix2mac', 'unlink', 'unlz4', 'unlzma', 'unmunch', 'unmunge', 'unpack200', 'unpigz', 'unrar', 'unrar_wrapper', 'unshar', 'unshare', 'unsquashfs', 'unxz', 'unzip', 'unzip-plain', 'unzipsfx', 'unzipsfx-plain', 'update-desktop-database', 'update-mime-database', 'update-xml-catalog', 'updatedb', 'updateinfoxml2solv', 'updmap', 'updmap-sys', 'updmap-user', 'uptime', 'urlgrabber', 'usb-devices', 'usbhid-dump', 'users', 'ustar', 'utmpdump', 'uudecode', 'uuencode', 'uuidgen', 'uuidparse', 'uxterm', 'uz', 'vacuumdb', 'vacuumlo', 'valgrind', 'valgrind-di-server', 'valgrind-listener', 'vdir', 'vdltodmx', 'verify_blkparse', 'vgdb', 'vi', 'view', 'vim', 'vim-nox11', 'vimdiff', 'vimtutor', 'vitmp', 'vlock', 'vmstat', 'vncconfig', 'vncpasswd', 'vncpasswd.arg', 'vncserver', 'vttest', 'vtysh', 'w', 'w3m', 'w3mman', 'wall', 'watch', 'watchgnupg', 'wayland-scanner', 'wbemai', 'wbemain', 'wbemcat', 'wbemci', 'wbemcli', 'wbemcli.py', 'wbemcli.py-2.7', 'wbemcli.py-3.6', 'wbemcm', 'wbemcmx', 'wbemdc', 'wbemdi', 'wbemec', 'wbemecn', 'wbemei', 'wbemein', 'wbemgc', 'wbemgcd', 'wbemgi', 'wbemgp', 'wbemmi', 'wbemri', 'wbemrin', 'wbemsp', 'wbinfo', 'wbmptopbm', 'wc', 'wdctl', 'webpng', 'westcos-tool', 'wget', 'whatis', 'whereis', 'which', 'who', 'whoami', 'whois', 'widget', 'winicontopam', 'winicontoppm', 'wish', 'wish8.6', 'wmidump', 'wmixtract', 'wordforms', 'wordlist2hunspell', 'write', 'x026', 'x0vncserver', 'x3270', 'x3270if', 'x86_64', 'x86_64-suse-linux-gnu-pkg-config', 'x86_energy_perf_policy', 'xargs', 'xauth', 'xbmtopbm', 'xconsole', 'xdg-desktop-icon', 'xdg-desktop-menu', 'xdg-email', 'xdg-icon-resource', 'xdg-mime', 'xdg-open', 'xdg-screensaver', 'xdg-settings', 'xdg-su', 'xdg-terminal', 'xdg_menu', 'xdg_menu_su', 'xdm', 'xdmxconfig', 'xf86debug', 'xgettext', 'xhost', 'xid_logger.sh', 'ximtoppm', 'xinit', 'xkbcomp', 'xkibitz', 'xli', 'xlito', 'xloadimage', 'xmessage', 'xmkmf', 'xml2-config', 'xml_grep', 'xml_merge', 'xml_pp', 'xml_spellcheck', 'xml_split', 'xmlcatalog', 'xmllint', 'xmltest', 'xmlwf', 'xmodmap', 'xorg-backtrace', 'xpath', 'xpmtoppm', 'xprop', 'xpstat', 'xrdb', 'xscreensaver', 'xscreensaver-command', 'xscreensaver-demo', 'xscreensaver-gl-helper', 'xset', 'xsetbg', 'xsetroot', 'xslt-config', 'xsltproc', 'xsubpp', 'xterm', 'xtermset', 'xview', 'xvminitoppm', 'xwdtopnm', 'xxd', 'xz', 'xzcat', 'xzcmp', 'xzdec', 'xzdiff', 'xzegrep', 'xzfgrep', 'xzgrep', 'xzless', 'xzmore', 'xznew', 'yacc', 'yat2m', 'ybmtopbm', 'yelp', 'yes', 'ypcat', 'ypchfn', 'ypchsh', 'ypdomainname', 'ypmatch', 'yppasswd', 'ypwhich', 'yuvsplittoppm', 'yuvtoppm', 'yuy2topam', 'yzpper', 'zcat', 'zcmp', 'zdiff', 'zegrep', 'zeisstopnm', 'zenity', 'zfgrep', 'zforce', 'zgrep', 'zip', 'zipcloak', 'zipdetails', 'zipgrep', 'zipgrep-plain', 'zipinfo', 'zipnote', 'zipsplit', 'zless', 'zmore', 'znew', 'zoo', 'zsh', 'zypp-CheckAccessDeleted', 'zypp-NameReqPrv', 'zypper'] ['arch', 'awk', 'basename', 'bash', 'blkparse', 'blktrace', 'btrace', 'cat', 'chgrp', 'chmod', 'chown', 'chvt', 'clrunimap', 'cp', 'cpio', 'csh', 'date', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-monitor', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dd', 'dd_rescue', 'deallocvt', 'df', 'dmesg', 'dnsdomainname', 'domainname', 'dumpkeys', 'echo', 'ed', 'egrep', 'ex', 'false', 'fgconsole', 'fgrep', 'fillup', 'find', 'findmnt', 'fsync', 'fuser', 'gawk', 'getkeycodes', 'getunimap', 'grep', 'guess_encoding', 'gunzip', 'gzip', 'hostname', 'ifconfig', 'initviocons', 'ip', 'kbd_mode', 'kbdinfo', 'kbdrate', 'keyctl', 'kill', 'ksh', 'lksh', 'ln', 'loadkeys', 'loadunimap', 'logger', 'login', 'ls', 'lsblk', 'lsmod', 'mail', 'mapscrn', 'md5sum', 'mkdir', 'mknod', 'mksh', 'mktemp', 'more', 'mount', 'mv', 'netstat', 'nisdomainname', 'openvt', 'outpsfheader', 'pdksh', 'pgrep', 'pidof', 'ping', 'ping6', 'pkill', 'ps', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'pwd', 'readlink', 'resizecons', 'rm', 'rmdir', 'route', 'rpm', 'screendump', 'sed', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setvesablank', 'setvtrgb', 'sh', 'showconsolefont', 'showkey', 'sleep', 'sort', 'spawn_console', 'spawn_login', 'stat', 'stty', 'su', 'sync', 'systemctl', 'systemd', 'systemd-ask-password', 'tar', 'tcsh', 'touch', 'tracepath', 'tracepath6', 'true', 'umount', 'uname', 'unicode_start', 'unicode_stop', 'usleep', 'vi', 'vim', 'ypdomainname', 'zcat', 'zsh'] ['gss-client', 'k5srvutil', 'kadmin', 'kdestroy', 'kinit', 'klist', 'kpasswd', 'krb5-config', 'ksu', 'kswitch', 'ktutil', 'kvno', 'sclient', 'sim_client', 'uuclient'] ['krb5-send-pr'] ['csmlversion', 'pe_cleanup_callback.sh', 'pe_postmount_callback.sh', 'pe_setup_callback.sh', 'set-gcc-libs', 'set_default', 'setup_shell_rcs.sh'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.packages.lgrind 0.052618 Defined "PYTHON_EXE" to ""/usr/common/software/python/3.7-anaconda-2019.10/bin/python"" Running Executable WITHOUT threads to time it out Executing: /usr/common/software/python/3.7-anaconda-2019.10/bin/python -c "import Cython" Running Executable WITHOUT threads to time it out Executing: /usr/common/software/python/3.7-anaconda-2019.10/bin/python -c "import numpy" child config.packages.python 2.332484 ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/petsc4py.py:97) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:97) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] child config.packages.petsc4py 0.042383 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/mpi4py.py:74) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.028722 ================================================================================ TEST alternateConfigureLibrary from config.packages.slepc(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/slepc.py:89) TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:89) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.026736 ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.007073 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.006355 ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.006319 ================================================================================ TEST alternateConfigureLibrary from config.packages.egads(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.006436 ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.006989 ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.006049 ================================================================================ TEST locateC2html from config.packages.c2html(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/c2html...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/c2html...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/c2html...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/c2html...not found Checking for program /opt/cray/pe/mpt/7.7.10/gni/bin/c2html...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/bin/c2html...not found Checking for program /opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/sbin/c2html...not found Checking for program /opt/cray/alps/default/bin/c2html...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.36__g36b56f4.ari/bin/c2html...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/c2html...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/c2html...not found Checking for program /global/common/cori/software/altd/2.0/bin/c2html...not found Checking for program /usr/common/software/bin/c2html...not found Checking for program /usr/common/mss/bin/c2html...not found Checking for program /usr/common/nsg/bin/c2html...not found Checking for program /opt/ovis/bin/c2html...not found Checking for program /opt/ovis/sbin/c2html...not found Checking for program /opt/cray/pe/modules/3.2.11.4/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/lib/mit/bin/c2html...not found Checking for program /usr/lib/mit/sbin/c2html...not found Checking for program /opt/cray/pe/bin/c2html...not found Checking for program /global/homes/m/madams/petsc_install/petsc/lib/petsc/bin/win32fe/c2html...not found Unable to find programs ['c2html'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['ddt-mpirun', 'forge', 'ddt', 'perf-report', 'forge-probe', 'map', 'forge-client', 'allinea-client', 'make-profiler-libraries', 'forge-mpirun', 'ddt-client'] ['qmlmin', 'iptest3', 'dask-mpi', 'sdbadmin', 'gss-client', 'cs2cs', 'ristosds', 'fc-scan', 'jupyter-kernel', 'navigator-updater', 'curl-config', 'bzgrep', 'xsltproc', 'jupyter-serverextension', 'lz4', 'runxlrd.py', 'pydoc', 'elbadmin', 'perror', 'dask-remote', 'geos-config', 'fitsheader', 'h5import', 'f2py', 'gif2hdf', 'fc-validate', 'glib-gettextize', 'pycc', 'pal2rgb', 'sqlite3_analyzer', 'sphinx-apidoc', 'uic', 'rst2html5.py', 'lzma', 'xzcmp', 'route53', 'tput', 'gst-discoverer-1.0', 'ncinfo', 'gsettings', 'sip', 'pip', 'hdftopal', 'pydoc3', 'h5mkgrp', 'gio', 'xmlwf', 'pyvenv-3.7', 'bsdtar', 'ncgen', 'tiffcmp', 'icuinfo', 'gencnval', 'pandoc', 'cph', 'ipython', 'xzgrep', 'pyvenv', 'pngfix', 'qmlimportscanner', 'rst2s5.py', 'h5redeploy', 'instance_events', 'ipcluster', 'qdoc', 'qtplugininfo', 'hdfed', 'jupyter-nbconvert', 'makeconv', 'tiffmedian', 'h5debug', 'qhelpgenerator', 'conda-inspect', 'gobject-query', 'conda-build', 'volint', 'toe', 'xml2-config', 'c_rehash', 'protoc', 'pep8', 'qcollectiongenerator', 'nc-config', 'fitsinfo', 'flask', 'hb-view', 'tic', 'kvno', 'lzcat', 'gdbus-codegen', 'conda-env', 'gst-inspect-1.0', 'dbus-send', 'h5c++', 'h5repack', 'wish', 'curve_keygen', 'pytest', 'tiffset', 'xzmore', 'xz', 'pyjson5', 'unlzma', 'unzstd', 'djpeg', 'glib-mkenums', 'fetch_file', 'gunicorn', 'asadmin', 'designer', 'qdbus', 'bokeh', 'dbus-uuidgen', 'sphinx-quickstart', 'infocmp', 'icu-config', 'ipengine', 'jpegtran', 'tiff2pdf', 'rst2html4.py', 'jupyter-bundlerextension', 'gst-typefind-1.0', 'h5cc', 'genbrk', 'klist', 'samp_hub', 'jpeg2hdf', 'pyflakes', 'launch_instance', 'h5stat', 's3put', 'bzfgrep', 'fc-cat', 'h5ls', 'qdbusviewer', 'cairo-trace', 'nad2bin', 'patchelf', 'lzegrep', 'jupyter-labextension', 'rst2pseudoxml.py', 'pandoc-citeproc', 'tiff2rgba', 'pcretest', 'h5copy', 'bzdiff', 'ptrepack', 'mturk', 'lzcmp', 'glib-genmarshal', 'pygmentize', 'fixqt4headers.pl', 'lzmainfo', 'bzless', 'assistant', 'qmllint', 'lss3', 'bzip2recover', 'f2py3.7', 'qmlprofiler', 'dask-scheduler', 'lz4c', 'bsdcat', 'python', 'dynamodb_load', 'imageio_remove_bin', 'cfadmin', 'dbus-monitor', 'rst2odt_prepstyles.py', 'tabulate', 'r8tohdf', 'cwutil', 'conda-convert', 'gif2h5', 'xmllint', 'taskadmin', 'bsdcpio', 'fribidi', 'bzcat', 'rcc', 'curl', 'h5unjam', 'h4redeploy', 'isort', 'tqdm', 'tiff2ps', 'bundle_image', 'dbus-launch', 'gtester', 'anaconda', 'easy_install', 'dask-ssh', 'hdf24to8', 'fc-pattern', 'qgltf', 'pg_config', 'k5srvutil', 'hdfcomp', 'sphinx-autogen', 'anaconda-navigator', 'list_instances', 'python3-config', 'pkgdata', 'dbus-test-tool', 'hrepack', 'fax2ps', 'epylint', 'vshow', 'freetype-config', 'jupyter-migrate', 'rst2man.py', 'cq', 'infotocap', 'tclsh8.6', 'pixeltool', 'reset', 'compile_et', 'xzegrep', 'jupyter-console', 'libpng16-config', 'qmlplugindump', 'xmlpatternsvalidator', 'qwebengine_convert_dict', 'hdftor8', 'tset', 'odbcinst', 'gendict', 'gapplication', 'jupyter-kernelspec', 'pasteurize', 'isql', 'python3.7-config', 'qdbusxml2cpp', 'rst2odt.py', 'jupyter-qtconsole', 'pango-list', 'dask-submit', 'kdestroy', 'dbus-run-session', 'xml2-config.bak', 'gresource', 'bzip2', 'zstd', 'zstdmt', 'h5clear', 'h5diff', 'deactivate', '2to3-3.7', 'gdbus', 'qdbuscpp2xml', 'gst-device-monitor-1.0', 'openssl', 'rg', 'jlpm', 'xslt-config', 'bzcmp', 'unlz4', 'fc-cache', 'bunzip2', 'xmlpatterns', 'sphinx-build', 'pango-view', 'rstpep2html.py', 'gencfu', 'vmake', 'conda-skeleton', 'genrb', 'futurize', 'hdf8to24', 'fc-conflist', 'lzgrep', 'wish8.6', 'qtpaths', 'sclient', 'rdjpgcom', 'hdfls', 'spyder', 'tiffinfo', 'libtool', 'cygdb', 'sim_client', 'qlalr', 'jupyter-troubleshoot', 'h4cc', 'iusql', 'pt2to3', 'wheel', 'jupyter-nbextension', 'mysql_config', 'tabs', 'hdf2jpeg', 'glib-compile-schemas', 'fc-query', 'ncdump', 'invproj', 'conda-metapackage', 'h52gif', 'rst2html.py', 'f2py3', 'nosetests', 'skivi', 'png-fix-itxt', 'libtoolize', 'anaconda-project', 'chardetect', 'nccopy', 'glib-compile-resources', 'tiffdump', 'bzmore', 'qml', 'gtester-report', 'dynamodb_dump', 'lzless', 'h5watch', 'xmlcatalog', 'idle3', 'dbus-daemon', 'jupyter-labhub', 'odbc_config', 'nc3tonc4', 'tiffcp', 'jupyter', 'hdfimport', 'qt.conf', 'showtable', 'py.test', 'gst-stats-1.0', 'python3.7m', 'iptest', 'zstdcat', 'ktutil', 'kinit', 'dbus-cleanup-sockets', 'conda-server', 'canbusutil', 'qmlcachegen', 'lzfgrep', 'cct', 'pttree', 'python3', 'lzmore', 'numba', 'qtattributionsscanner', 'conda-develop', 'pyuic5', 'glacier', 'idle3.7', 'lrelease', 'lzmadec', 'qscxmlc', 'h5fc', 'xzless', 'jsonschema', 'lz4cat', 'hdf2gif', 'wrjpgcom', 'hdp', 'tiffsplit', 'pyrcc5', 'kswitch', 'h5jam', 'ipython3', 'conda-verify', 'qmake', 'nc4tonc3', 'kill_instance', 'moc', 'vba_extract.py', 'ptdump', 'geod', 'hb-shape', 'qtdiag', 'gst-play-1.0', 'krb5-config', 'ppm2tiff', 'pydoc3.7', 'cython', 'python3.7', 'jupyter-notebook', 'uuclient', 'keyring', 'gie', 'pcre-config', 'h5repart', 'hb-subset', 'fax2tiff', 'xzdiff', 'rst2xetex.py', 'h4_ncdump', 'fitscheck', 'pycodestyle', 'clear', 'gst-launch-1.0', 'repc', 'cjpeg', 'h5dump', 'kpasswd', 'xzcat', 'rst2xml.py', 'ipcontroller', 'lconvert', 'activate', 'h5perf_serial', 'sqlite3', 'h5format_convert', 'ksu', 'captoinfo', 'lupdate', 'hdfpack', 'lzdiff', 'dbus-update-activation-environment', 'conda-debug', 'conda-render', 'syncqt.pl', 'pybabel', 'symilar', 'bzegrep', 'pyreverse', 'paltohdf', 'fc-list', 'my_print_defaults', 'xzfgrep', 'tiffdither', 'derb', 'dltest', 'cythonize', 'proj', 'tiffcrop', 'qhelpconverter', 'pkginfo', 'raw2tiff', 'pyami_sendmail', 'fits2bitmap', 'qmltestrunner', 'jupyter-trust', 'python3.7m-config', 'pylint', 'kadmin', 'xzdec', 'isympy', 'qmlscene', 'h4_ncgen', 'rst2latex.py', 'imageio_download_bin', 'binstar', 'jupyter-lab', 'conda-index', 'conda', 'wcslint', 'libpng-config', 'tclsh', 'pylupdate5', 'linguist', 'unxz', 'pcregrep', 'slencheck', 'ncursesw6-config', 'qmleasing', 'fitsdiff', 'gio-querymodules', '2to3', 'hdiff', 'jupyter-run', 'ncgen3', 'hdfunpac', 'tiff2bw', 'hb-ot-shape-closure', 'invgeod', 'dask-worker', 'fc-match'] Warning accessing /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin gives errors: [Errno 2] No such file or directory: '/global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin' ['ctest', 'cpack', 'cmake', 'ccmake'] ['cray_mpiio_example_gnuplot.sh', 'cray_mpiio_example_gnuplot_by_ranks.sh', 'cray_mpiio_example_gnuplot_multiplot.sh', 'cray_mpiio_example_gnuplot_summary.sh', 'cray_mpiio_gen_data', 'cray_mpiio_summary'] ['rca-helper', 'rca-hssconfig', 'rca_arpd', 'rca_send_booted'] ['apinit', 'apinit_rca_notify'] Warning accessing /opt/cray/alps/default/bin gives errors: [Errno 2] No such file or directory: '/opt/cray/alps/default/bin' ['jattach', 'jdetach', 'jkill', 'jsethid', 'jstat', 'jwait'] ['2.25.0.craype.ld', 'CC', 'cc', 'driver', 'ftn'] ['codecov', 'dbmerge', 'fortcom', 'fpp', 'gcore-ia', 'gdb-ia', 'icc', 'icc.cfg', 'icpc', 'icpc.cfg', 'ifort', 'ifort.cfg', 'libcilkrts.so.5', 'loopprofileviewer.csh', 'loopprofileviewer.sh', 'map_opts', 'mcpcom', 'offload_extract', 'profdcg', 'profmerge', 'profmergesampling', 'proforder', 'tselect', 'x86_64-linux.env', 'xiar', 'xiar.cfg', 'xild', 'xild.cfg'] ['check_perm.sh', 'backup.sh', 'crontab.txt', 'pyLD.py', 'ld_db.sh', 'ld', 'get_vasp_inputs.sh', 'hpss_backup.sh', 'aprun_db.sh', 'aprun.save', 'upload_db_lds.sh'] ['usgrsu', 'list-ssh-certs', 'wheres_my_job.py', 'ftp', 'prjdirs', 'tape_stats', 'stripe_large', 'hpss_target_directory_creation.py', 'getnim', 'dirquota', 'meshcoords', 'lmstat', 'fixdots2', 'take', 'find_and_kill', 'check-mpi.cce.cori', 'bbcp', 'mk_pip_cabundle.sh', 'nids_to_ranges', 'sw_support', 'stripe_medium', 'lspkg', 'fix_perms', 'gperf', 'fix_usg', 'burp', 'emptydots', 'hpss_file_sorter.script', 'check-mpi.intel.cori', 'sqs1', 'prjbdirs', 'linkinfo.sh', 'stripe_medium.backup', 'hpssquota', 'mods', 'hpss_file_sorter.py', 'o:q!', 'check-hybrid.intel.cori', 'findemptydirs', 'sshproxy.sh', 'check-mpi.gnu.cori', 'sqs.old', 'sqs', 'stripe_large.backup', 'jobstats', 'cmnquota', 'upinter', 'prjquota', 'give', 'pe_changes.py', 'prjaquota', 'sqs.new', 'check_license.sh', 'susw', 'xcmap', 'gen_nodelist.sh', 'svnlook', 'esl.sh', 'fixdots', 'home_over', 'check-hybrid.gnu.cori', 'hpss_file_sorter.py~', 'nc', 'stripe_small.backup', 'static_linking_ddt_md_th', 'swcats', 'nedit', 'check-hybrid.cce.cori', 'iris', 'stripe_small', 'dotmgr', 'hold_prjquota', 'home_usage', 'mynersc_wrappers', 'static_linking_ddt_md', 'wheres_my_job.py.bak', 'module_restore.sh', 'tape_order', 'tedi', 'ndots', 'nersc_host', 'cfsquota', 'not_used', 'run-and-watch.sh', 'generate_sorted_list_for_hpss.py', 'cmark', 'findtouch'] ['hsi', 'ftp', 'wfile', '.pftp_client_73', 'obins', '.htar.exe', '.hsi.exe', 'mkhpsstok', 'htar', 'hpss_avail', 'hsi_testcos', 'pftp'] Warning accessing /usr/common/nsg/bin gives errors: [Errno 2] No such file or directory: '/usr/common/nsg/bin' ['envldms.sh', 'ldms-csv-anonymize', 'ldms-csv-export-sos', 'ldms-l2_test.sh', 'ldms-meminfo.sh', 'ldms-pedigree', 'ldms-plugins.sh', 'ldms-py-rename.sh', 'ldms-py-subset_test.sh', 'ldms-py-syslog.sh', 'ldms-py-varset.sh', 'ldms-static-test.sh', 'ldms_ban.sh', 'ldms_local_opa2test.sh', 'ldmsd_controller', 'lmq', 'lsdate', 'ods_dump', 'sos-db', 'sos-import-csv', 'sos-monitor', 'sos-part', 'sos-schema', 'sos_cmd', 'sos_part_create', 'sos_part_delete', 'sos_part_export', 'sos_part_index', 'sos_part_modify', 'sos_part_move', 'sos_part_query'] ['.ldms-wrapper', 'json_test', 'ldms-aggd', 'ldms_ls', 'ldmsaggctl', 'ldmsctl', 'ldmsd', 'ldmsd_sos_init', 'ldmsd_stream_publish', 'ldmsd_stream_subscribe'] ['add.modules', 'mkroot', 'modulecmd'] [] ['.hmac256.hmac', '411toppm', 'BackGround', 'Backarrow2BackSpace', 'Backarrow2Delete', 'Mail', 'Signature_conversion', 'WebKitWebDriver', 'X', 'X11', 'Xdmx', 'Xephyr', 'Xnest', 'Xorg', 'Xvfb', 'Xvnc', '[', 'a4toa5', 'ac', 'aclocal', 'aclocal-1.15', 'aconnect', 'acpi_validate', 'acpibin', 'acpiexamples', 'acpiexec', 'acpihelp', 'acpinames', 'acpisrc', 'acpixtract', 'activation-client', 'addr2line', 'affixcompress', 'afs5log', 'agentxtrap', 'all_notes_off', 'allcm', 'allec', 'allneeded', 'alsaloop', 'alsamixer', 'alsatplg', 'alsaucm', 'amidi', 'amixer', 'amuFormat.sh', 'analyze', 'annotate', 'ansible', 'ansible-doc', 'ansible-galaxy', 'ansible-playbook', 'ansible-pull', 'ansible-vault', 'ant', 'antRun', 'antlr', 'antlr-config', 'anytopnm', 'aplay', 'aplaymidi', 'appdata2solv', 'applydeltaiso', 'applydeltarpm', 'apropos', 'ar', 'arch', 'arecord', 'arecordmidi', 'arpaname', 'as', 'asciitopgm', 'aseqdump', 'aseqnet', 'asn1Coding', 'asn1Decoding', 'asn1Parser', 'at', 'atktopbm', 'atq', 'atrm', 'attr', 'audit2allow', 'audit2why', 'aulast', 'aulastlog', 'ausyscall', 'autoconf', 'autoexpect', 'autoheader', 'autom4te', 'automake', 'automake-1.15', 'autopoint', 'autoreconf', 'autoscan', 'autoupdate', 'auvirt', 'avstopam', 'awk', 'b2sum', 'base32', 'base64', 'basename', 'bashbug', 'batch', 'bbox', 'bc', 'bdftogd', 'bdftruncate', 'bgp_btoa', 'bibtex', 'binhex.pl', 'bioradtopgm', 'bison', 'blkiomon', 'blkrawverify', 'bmptopnm', 'bmptoppm', 'bno_plot.py', 'bonnie', 'bonobo-activation-run-query', 'bonobo-slay', 'bootctl', 'broadwayd', 'brushtopbm', 'btrecord', 'btreplay', 'btt', 'build-classpath', 'build-classpath-directory', 'build-jar-repository', 'bunzip2', 'busctl', 'busybox', 'busybox.install', 'bwrap', 'bzcat', 'bzcmp', 'bzdiff', 'bzegrep', 'bzfgrep', 'bzgrep', 'bzip2', 'bzip2recover', 'bzless', 'bzmore', 'bznew', 'c++', 'c++filt', 'c3270', 'c_rehash', 'cal', 'call-browser', 'callgrind_annotate', 'callgrind_control', 'cameratopam', 'cancel', 'capinfos', 'captoinfo', 'captype', 'card_eventmgr', 'cardos-tool', 'cat', 'catchsegv', 'catman', 'cc', 'ccmake', 'ccmakedep', 'certtool', 'cg_annotate', 'cg_diff', 'cg_merge', 'chacl', 'chage', 'chardetect', 'chardetect-2.7', 'chardetect-3.6', 'chattr', 'chcat', 'chcon', 'check-binary-files', 'checkmodule', 'checkpolicy', 'chfn', 'chgrp', 'chkconfig', 'chkstat', 'chmem', 'chmod', 'chmorph', 'chooser', 'chown', 'chronyc', 'chroot', 'chrp-addnote', 'chrt', 'chsh', 'chvt', 'ci', 'cifscreds', 'cifsdd', 'cifsiostat', 'cistopbm', 'cksum', 'clamav-config', 'clambc', 'clamconf', 'clamdscan', 'clamdtop', 'clamscan', 'clean-binary-files', 'cleanlinks', 'clear', 'clrunimap', 'clusterdb', 'cmake', 'cmp', 'cmuwmtopbm', 'cnf', 'co', 'col', 'colcrt', 'colrm', 'column', 'combinedeltarpm', 'comm', 'command-not-found', 'compile_et', 'comps2solv', 'convmv', 'corelist', 'cp', 'cpack', 'cpan', 'cpio', 'cpp', 'cpp-7', 'cpupcstat', 'cpupower', 'cray-nvidia-acct', 'cray-nvidia-energy', 'cray-xid-logger', 'crc32', 'create-jar-links', 'createdb', 'createrepo', 'createrepo_c', 'createuser', 'crontab', 'cryptdir', 'cryptoflex-tool', 'csh', 'csplit', 'ctags', 'ctags-exuberant', 'ctest', 'cups-config', 'cupstestdsc', 'cupstestppd', 'curl', 'curl-config', 'cut', 'cvs', 'cvsbug', 'cvslock', 'cvt', 'cyrus_sasl_sample_client', 'cyrus_sasl_sample_server', 'dasher', 'date', 'db48_archive', 'db48_checkpoint', 'db48_deadlock', 'db48_dump', 'db48_hotbackup', 'db48_load', 'db48_printlog', 'db48_recover', 'db48_sql', 'db48_stat', 'db48_upgrade', 'db48_verify', 'db_archive', 'db_checkpoint', 'db_deadlock', 'db_dump', 'db_hotbackup', 'db_load', 'db_printlog', 'db_recover', 'db_sql', 'db_stat', 'db_upgrade', 'db_verify', 'dbilogstrip', 'dbiprof', 'dbiproxy', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-launch', 'dbus-launch.nox11', 'dbus-launch.x11', 'dbus-monitor', 'dbus-run-session', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dbwrap_tool', 'dc', 'dconf', 'dd', 'dd_rescue', 'ddbugtopbm', 'deallocvt', 'debinhex.pl', 'decryptdir', 'deltainfoxml2solv', 'delv', 'desktop-file-edit', 'desktop-file-install', 'desktop-file-validate', 'desktop-launch', 'devdump', 'df', 'dialog', 'diff', 'diff-jars', 'diff3', 'diffpp', 'dig', 'dir', 'dircolors', 'dirmngr', 'dirmngr-client', 'dirmngr_ldap', 'dirname', 'disable-paste', 'dislocate', 'display-buttons', 'display-coords', 'dkimsign.pl', 'dkimverify.pl', 'dltest', 'dm_date', 'dm_zdump', 'dmesg', 'dmxaddinput', 'dmxaddscreen', 'dmxinfo', 'dmxreconfig', 'dmxresize', 'dmxrminput', 'dmxrmscreen', 'dmxtodmx', 'dmxwininfo', 'dnie-tool', 'dnsdomainname', 'domainname', 'dos2unix', 'doxygen', 'dracut', 'driverless', 'dropdb', 'dropuser', 'drpmsync', 'dtrace', 'du', 'dump2psl.pl', 'dump2slvl.pl', 'dumpcap', 'dumpkeys', 'dumpsexp', 'dumpsolv', 'dvi2fax', 'dviasm', 'dvibook', 'dviconcat', 'dvidvi', 'dvigif', 'dvilualatex', 'dviluatex', 'dvipdf', 'dvipng', 'dvired', 'dviselect', 'dvisvgm', 'dvitodvi', 'dwp', 'dwz', 'easy_install', 'easy_install-2.7', 'ebrowse', 'echo', 'echo-client-2', 'ecpg', 'ed', 'edit', 'edit-xml-catalog', 'edit-xml-catalog.sh', 'editcap', 'egk-tool', 'egrep', 'egview', 'egvim', 'eidenv', 'eject', 'elfedit', 'emacs', 'emacs-gtk', 'emacs-x11', 'emacsclient', 'embedspu', 'enc2xs', 'encguess', 'encode_keychange', 'enscript', 'enscript.bin', 'env', 'envsubst', 'eog', 'eps2eps', 'epsffit', 'eqn', 'erb', 'erb.ruby2.5', 'escp2topbm', 'espeak', 'etags', 'etex', 'eu-addr2line', 'eu-ar', 'eu-elfcmp', 'eu-elfcompress', 'eu-elflint', 'eu-findtextrel', 'eu-make-debug-archive', 'eu-nm', 'eu-objdump', 'eu-ranlib', 'eu-readelf', 'eu-size', 'eu-stack', 'eu-strings', 'eu-strip', 'eu-unstrip', 'eventlogadm', 'eview', 'evim', 'evince', 'evince-previewer', 'evince-thumbnailer', 'ex', 'expand', 'expect', 'expiry', 'expr', 'extlinux', 'extractres', 'eyuvtoppm', 'f2py', 'f2py2', 'f2py2.7', 'f2py3', 'f2py3.6', 'factor', 'fallocate', 'false', 'fastjar', 'fc-cache', 'fc-cache32', 'fc-cat', 'fc-cat32', 'fc-list', 'fc-list32', 'fc-match', 'fc-match32', 'fc-pattern', 'fc-query', 'fc-scan', 'fc-validate', 'fdupes', 'fetchmail', 'fgconsole', 'fgrep', 'fiascotopnm', 'file', 'file-roller', 'filesize', 'fillup', 'fincore', 'find', 'find-jar', 'findmnt', 'findsmb', 'fips_standalone_hmac', 'fitstopnm', 'fixdlsrps', 'fixfmps', 'fixmacps', 'fixproc', 'fixpsditps', 'fixpspps', 'fixscribeps', 'fixtpps', 'fixwfwps', 'fixwpps', 'fixwwps', 'fiz', 'flask-2.7', 'flex', 'flex++', 'flock', 'fmt', 'fmtutil', 'fmtutil-sys', 'fmtutil-user', 'fold', 'foomatic-rip', 'formail', 'fragiso', 'free', 'freetype-config', 'freshclam', 'fribidi', 'fsfs-access-map', 'fstopgm', 'ftp', 'ftp-rfc', 'funzip', 'funzip-plain', 'fuser', 'fusermount', 'g++', 'g++-7', 'g-ir-annotation-tool', 'g-ir-compiler', 'g-ir-doc-tool', 'g-ir-generate', 'g-ir-inspect', 'g-ir-scanner', 'g13', 'g2r', 'gapplication', 'gawk', 'gcc', 'gcc-7', 'gcc-ar', 'gcc-ar-7', 'gcc-nm', 'gcc-nm-7', 'gcc-ranlib', 'gcc-ranlib-7', 'gccmakedep', 'gconf-editor', 'gconf-merge-tree', 'gconftool-2', 'gconftool-rebuild', 'gcore', 'gcov', 'gcov-7', 'gcov-dump', 'gcov-dump-7', 'gcov-tool', 'gcov-tool-7', 'gd2copypal', 'gd2togif', 'gd2topng', 'gdb', 'gdb-add-index', 'gdbm_dump', 'gdbm_load', 'gdbmtool', 'gdbserver', 'gdbus', 'gdbus-codegen', 'gdcmpgif', 'gdialog', 'gdk-pixbuf-csource', 'gdk-pixbuf-pixdata', 'gdk-pixbuf-query-loaders-64', 'gdm', 'gdm-screenshot', 'gdmflexiserver', 'gdparttopng', 'gdtopng', 'gedi', 'gedit', 'gem', 'gem.ruby2.5', 'gem2rpm', 'gem2rpm-0.10.1', 'gem2rpm.ruby2.5', 'gem2rpm.ruby2.5-0.10.1', 'gemtopbm', 'gemtopnm', 'genDDNSkey', 'gencat', 'gendiff', 'genscript', 'geqn', 'get-versions', 'get_kernel_version', 'getafm', 'getcifsacl', 'getconf', 'getdelays', 'getent', 'getfacl', 'getfattr', 'gethostip', 'getkeycodes', 'getopt', 'gettext', 'gettext.sh', 'gettextize', 'getunimap', 'gex', 'gids-tool', 'giftogd2', 'giftopnm', 'gio', 'gio-querymodules-64', 'git', 'git-new-workdir', 'git-receive-pack', 'git-shell', 'git-upload-archive', 'git-upload-pack', 'git_version.tcl', 'gkbd-keyboard-display', 'glib-compile-resources', 'glib-compile-schemas', 'glib-genmarshal', 'glib-gettextize', 'glib-mkenums', 'gmake', 'gnome', 'gnome-control-center', 'gnome-help', 'gnome-keyring', 'gnome-keyring-3', 'gnome-keyring-daemon', 'gnome-open', 'gnome-session', 'gnome-session-inhibit', 'gnome-session-quit', 'gnome-shell', 'gnome-shell-extension-prefs', 'gnome-terminal', 'gnome-text-editor', 'gnomesu', 'gnomevfs-cat', 'gnomevfs-copy', 'gnomevfs-df', 'gnomevfs-info', 'gnomevfs-ls', 'gnomevfs-mkdir', 'gnomevfs-monitor', 'gnomevfs-mv', 'gnomevfs-rm', 'gnuctags', 'gnuplot', 'gnutls-cli', 'gnutls-cli-debug', 'gnutls-serv', 'gobject-query', 'gouldtoppm', 'gpasswd', 'gpg', 'gpg-agent', 'gpg-connect-agent', 'gpg-error', 'gpg-error-config', 'gpg-wks-server', 'gpg-zip', 'gpg2', 'gpgconf', 'gpgme-tool', 'gpgparsemail', 'gpgrt-config', 'gpgscm', 'gpgsm', 'gpgtar', 'gpgv', 'gpgv2', 'gpm-root', 'gprof', 'grep', 'grepjar', 'gresource', 'groff', 'grog', 'grops', 'grotty', 'groups', 'gs', 'gsbj', 'gsdj', 'gsdj500', 'gsettings', 'gsettings-data-convert', 'gsftopk', 'gslj', 'gslp', 'gsnd', 'gst-device-monitor-1.0', 'gst-discoverer-1.0', 'gst-play-1.0', 'gstack', 'gtbl', 'gtester', 'gtester-report', 'gtf', 'gtk-builder-convert', 'gtk-builder-tool', 'gtk-demo', 'gtk-encode-symbolic-svg', 'gtk-launch', 'gtk-query-immodules-2.0-64', 'gtk-query-immodules-3.0-64', 'gtk-query-settings', 'gtk-update-icon-cache', 'gtk-update-icon-cache-2.0', 'gtk-update-icon-cache-3.0', 'gtk3-demo', 'gtk3-demo-application', 'gtk3-icon-browser', 'gtk3-widget-factory', 'guess_encoding', 'guild', 'guile', 'guile-tools', 'gunicorn', 'gunicorn-2.7', 'gunicorn_paster', 'gunicorn_paster-2.7', 'gunzip', 'gv', 'gv-update-userconfig', 'gvfs-cat', 'gvfs-copy', 'gvfs-info', 'gvfs-less', 'gvfs-ls', 'gvfs-mime', 'gvfs-mkdir', 'gvfs-monitor-dir', 'gvfs-monitor-file', 'gvfs-mount', 'gvfs-move', 'gvfs-open', 'gvfs-rename', 'gvfs-rm', 'gvfs-save', 'gvfs-set-attribute', 'gvfs-trash', 'gvfs-tree', 'gvi', 'gview', 'gvim', 'gvimdiff', 'gvimtutor', 'gzexe', 'gzip', 'h2ph', 'h2xs', 'hardlink', 'hattrib', 'hcd', 'hcopy', 'hdel', 'hdifftopam', 'hdir', 'hdisk.pl', 'head', 'hexdump', 'hformat', 'hipstopgm', 'hls', 'hltest', 'hmac256', 'hmkdir', 'hmount', 'host', 'hostid', 'hostname', 'hostnamectl', 'hpwd', 'hrename', 'hrmdir', 'hugeadm', 'hugectl', 'hugeedit', 'humount', 'hunspell', 'hunzip', 'hvol', 'hwloc-annotate', 'hwloc-assembler', 'hwloc-assembler-remote', 'hwloc-bind', 'hwloc-calc', 'hwloc-compress-dir', 'hwloc-diff', 'hwloc-distances', 'hwloc-distrib', 'hwloc-gather-topology', 'hwloc-info', 'hwloc-ls', 'hwloc-patch', 'hwloc-ps', 'hzip', 'i386', 'iasecc-tool', 'iasl', 'ib_atomic_bw', 'ib_atomic_lat', 'ib_read_bw', 'ib_read_lat', 'ib_send_bw', 'ib_send_lat', 'ib_write_bw', 'ib_write_lat', 'ibdiagnet', 'ibdiagpath', 'ibdmchk', 'ibdmsh', 'ibdmtr', 'ibis', 'ibnlparse', 'ibtopodiff', 'iceauth', 'icesh', 'icesh-lite', 'icewm', 'icewm-lite', 'icewm-session', 'icewm-session-lite', 'icewmbg', 'icewmbg-lite', 'icewmhint', 'icewmhint-lite', 'icontopbm', 'iconv', 'icu-config', 'id', 'ident', 'idl2wrs', 'iecset', 'ifconfig', 'ifnames', 'ilbmtoppm', 'imake', 'imgtoppm', 'includeres', 'info', 'infocmp', 'infotocap', 'infotopam', 'initdb', 'initex', 'initviocons', 'install', 'install-catalog', 'install-catalog.sh', 'install-dtd.sh', 'install-info', 'installation_sources', 'installcheck', 'instmodsh', 'ionice', 'iostat', 'iowatcher', 'ipcmk', 'ipcount', 'ipcrm', 'ipcs', 'ipf-mod.pl', 'ipmitool', 'ippfind', 'ipptool', 'iptab', 'irb', 'irb.ruby2.5', 'isodebug', 'isodump', 'isohybrid', 'isohybrid.pl', 'isoinfo', 'isolinux-config', 'isosize', 'isovfy', 'ispellaff2myspell', 'isql', 'iusql', 'jar', 'jarsigner', 'java', 'javac', 'javadoc', 'javap', 'jbigtopnm', 'jcmd', 'jconsole', 'jdb', 'jdeprscan', 'jdeps', 'jhsdb', 'jimage', 'jinfo', 'jjs', 'jlink', 'jmap', 'jmod', 'join', 'journalctl', 'jpeg2ktopam', 'jpegtopnm', 'jps', 'jq', 'jrunscript', 'jshell', 'json_pp', 'jstack', 'jstat', 'jstatd', 'kbd', 'kbd_mode', 'kbdinfo', 'kbdrate', 'kbxutil', 'kdumpid', 'kernel-install', 'keyctl', 'keygen', 'keytab-lilo', 'keytool', 'kibitz', 'kill', 'killall', 'kinit', 'klist', 'kmod', 'kmp-install', 'koi8rxterm', 'kpseaccess', 'kpsepath', 'kpsereadlink', 'kpsestat', 'kpsetool', 'kpsewhere', 'kpsewhich', 'kpsexpand', 'ksh', 'lacheck', 'last', 'lastb', 'lastcomm', 'lastlog', 'latex', 'ld', 'ld.bfd', 'ldapadd', 'ldapcompare', 'ldapdelete', 'ldapexop', 'ldapmodify', 'ldapmodrdn', 'ldappasswd', 'ldapsearch', 'ldapurl', 'ldapwhoami', 'ldd', 'leaftoppm', 'less', 'lessclose.sh', 'lessecho', 'lesskey', 'lessopen.sh', 'lex', 'lexgrog', 'lfs', 'lfs_migrate', 'lftp', 'lftp_wrapper', 'lftpget', 'libgcrypt-config', 'libnetcfg', 'libpng-config', 'libpng16-config', 'libtool', 'libtoolize', 'linc-cleanup-sockets', 'line', 'link', 'linux32', 'linux64', 'lispmtopgm', 'lksh', 'ln', 'lndir', 'lnstat', 'loadkeys', 'loadmof.sh', 'loadunimap', 'locale', 'localectl', 'localedef', 'locate', 'lockfile', 'logger', 'loginctl', 'logname', 'lognormalizer', 'look', 'lp', 'lpoptions', 'lpq', 'lpr', 'lprm', 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'numfmt', 'nvidia-bug-report.sh', 'nvidia-cuda-mps-control', 'nvidia-cuda-mps-server', 'nvidia-debugdump', 'nvidia-persistenced', 'nvidia-settings', 'nvidia-smi', 'nvidia-xconfig', 'oLschema2ldif', 'objcopy', 'objdump', 'oci-image-tool', 'ocount', 'ocsptool', 'od', 'odbc_config', 'odbcinst', 'odd2even', 'ofl', 'oid2name', 'old', 'op-check-perfevents', 'opannotate', 'oparchive', 'openpgp-tool', 'opensc-asn1', 'opensc-explorer', 'opensc-notify', 'opensc-tool', 'openssl', 'openvt', 'operf', 'opgprof', 'ophelp', 'opimport', 'opjitconv', 'opreport', 'oprofile_map_events.pl', 'oprofile_start.sh', 'outpsfheader', 'over', 'p11-kit', 'p11tool', 'pack200', 'pagesize', 'palmtopnm', 'pamaddnoise', 'pamarith', 'pambackground', 'pambayer', 'pamchannel', 'pamcomp', 'pamcrater', 'pamcut', 'pamdeinterlace', 'pamdepth', 'pamdice', 'pamditherbw', 'pamedge', 'pamendian', 'pamenlarge', 'pamexec', 'pamfile', 'pamfix', 'pamfixtrunc', 'pamflip', 'pamfunc', 'pamgauss', 'pamgradient', 'pamlookup', 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'pbmtoatk', 'pbmtobbnbg', 'pbmtocis', 'pbmtocmuwm', 'pbmtodjvurle', 'pbmtoepsi', 'pbmtoepson', 'pbmtoescp2', 'pbmtog3', 'pbmtogem', 'pbmtogo', 'pbmtoibm23xx', 'pbmtoicon', 'pbmtolj', 'pbmtoln03', 'pbmtolps', 'pbmtomacp', 'pbmtomatrixorbital', 'pbmtomda', 'pbmtomgr', 'pbmtomrf', 'pbmtonokia', 'pbmtopgm', 'pbmtopi3', 'pbmtopk', 'pbmtoplot', 'pbmtoppa', 'pbmtopsg3', 'pbmtoptx', 'pbmtosunicon', 'pbmtowbmp', 'pbmtox10bm', 'pbmtoxbm', 'pbmtoybm', 'pbmtozinc', 'pbmupc', 'pc1toppm', 'pcre-config', 'pcre2-config', 'pcregrep', 'pcretest', 'pcxtoppm', 'pdbedit', 'pdbimgtopam', 'pdf2dsc', 'pdf2ps', 'pdfdetach', 'pdfetex', 'pdffonts', 'pdfimages', 'pdfinfo', 'pdflatex', 'pdfseparate', 'pdfsig', 'pdftex', 'pdftexi2dvi', 'pdftocairo', 'pdftohtml', 'pdftoppm', 'pdftops', 'pdftotext', 'pdfunite', 'pdksh', 'peekfd', 'perf', 'perl', 'perl5.26.1', 'perlbug', 'perldoc', 'perlivp', 'perlthanks', 'pf2afm', 'pfbtopfa', 'pfmtopam', 'pg_archivecleanup', 'pg_basebackup', 'pg_config', 'pg_controldata', 'pg_ctl', 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'pngtogd2', 'pngtopam', 'pngtopnm', 'pnmalias', 'pnmarith', 'pnmcat', 'pnmcolormap', 'pnmcomp', 'pnmconvol', 'pnmcrop', 'pnmcut', 'pnmdepth', 'pnmenlarge', 'pnmfile', 'pnmflip', 'pnmgamma', 'pnmhisteq', 'pnmhistmap', 'pnmindex', 'pnminterp', 'pnminvert', 'pnmmargin', 'pnmmercator', 'pnmmontage', 'pnmnlfilt', 'pnmnoraw', 'pnmnorm', 'pnmpad', 'pnmpaste', 'pnmpsnr', 'pnmquant', 'pnmquantall', 'pnmremap', 'pnmrotate', 'pnmscale', 'pnmscalefixed', 'pnmshear', 'pnmsmooth', 'pnmsplit', 'pnmstitch', 'pnmtile', 'pnmtoddif', 'pnmtofiasco', 'pnmtofits', 'pnmtojbig', 'pnmtojpeg', 'pnmtopalm', 'pnmtopclxl', 'pnmtoplainpnm', 'pnmtopng', 'pnmtopnm', 'pnmtops', 'pnmtorast', 'pnmtorle', 'pnmtosgi', 'pnmtosir', 'pnmtotiff', 'pnmtotiffcmyk', 'pnmtoxwd', 'pod2html', 'pod2man', 'pod2texi', 'pod2text', 'pod2usage', 'pod_cover', 'podchecker', 'podselect', 'postgres', 'postmaster', 'pphs', 'ppm3d', 'ppmbrighten', 'ppmchange', 'ppmcie', 'ppmcolormask', 'ppmcolors', 'ppmdcfont', 'ppmddumpfont', 'ppmdim', 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'snmpinform', 'snmpkey', 'snmpnetstat', 'snmpset', 'snmpstatus', 'snmptable', 'snmptest', 'snmptls', 'snmptranslate', 'snmptrap', 'snmpusm', 'snmpvacm', 'snmpwalk', 'socklist', 'soelim', 'sort', 'spamassassin', 'spamc', 'spawn_console', 'spawn_login', 'spax', 'spctoppm', 'speaker-test', 'splain', 'split', 'spottopgm', 'sprio', 'sprof', 'sputoppm', 'sqlite3', 'sqlite3_analyzer', 'sqliterepo', 'sqliterepo_c', 'squeue', 'squidclient', 'sreport', 'srftopam', 'srptool', 'srun', 'ss', 'ssh', 'ssh-add', 'ssh-agent', 'ssh-copy-id', 'ssh-keygen', 'ssh-keyscan', 'sshare', 'sss_ssh_authorizedkeys', 'sss_ssh_knownhostsproxy', 'sstat', 'st4topgm', 'stap', 'stap-merge', 'stap-report', 'stapbpf', 'staprun', 'stapsh', 'star', 'startx', 'stat', 'states', 'stdbuf', 'stdlogctl', 'strace', 'strace-graph', 'strace-log-merge', 'strigger', 'strings', 'strip', 'stty', 'su', 'sum', 'sunicontopnm', 'suse-update-mime-defaults', 'susetags2solv', 'svgtopam', 'sview', 'svn', 'svn-bench', 'svn-populate-node-origins-index', 'svn_apply_autoprops.py', 'svnadmin', 'svnauthz', 'svnauthz-validate', 'svnbench', 'svndiff', 'svndumpfilter', 'svnfsfs', 'svngrep', 'svnlook', 'svnmucc', 'svnraisetreeconflict', 'svnrdump', 'svnserve', 'svnsync', 'svnversion', 'sync', 'syslinux', 'syslinux-mtools', 'syslinux2ansi', 'systemctl', 'systemd-analyze', 'systemd-ask-password', 'systemd-cat', 'systemd-cgls', 'systemd-cgtop', 'systemd-delta', 'systemd-detect-virt', 'systemd-escape', 'systemd-firstboot', 'systemd-hwdb', 'systemd-inhibit', 'systemd-machine-id-setup', 'systemd-mount', 'systemd-notify', 'systemd-path', 'systemd-run', 'systemd-socket-activate', 'systemd-stdio-bridge', 'systemd-sysusers', 'systemd-tmpfiles', 'systemd-tty-ask-password-agent', 'systemd-umount', 'systool', 'tabs', 'tac', 'tack', 'tail', 'tapestat', 'tar', 'targetcli', 'targetcli-3.6', 'targetctl', 'targetctl-3.6', 'tartest', 'taskset', 'tbl', 'tcl3270', 'tclsh', 'tclsh8.6', 'tcsh', 'tee', 'telnet', 'termprobes', 'test', 'test_igmpv3_join', 'testparm', 'testsaslauthd', 'testsolv', 'tethereal', 'tex', 'texconfig', 'texconfig-dialog', 'texconfig-sys', 'texhash', 'texi2any', 'texi2dvi', 'texi2pdf', 'texindex', 'texlinks', 'texlua', 'texluac', 'texluajit', 'texluajitc', 'text2pcap', 'tftp', 'tgatoppm', 'tgz', 'thinkjettopbm', 'thumbpdf', 'tic', 'tidy_changelog', 'tifftopnm', 'time', 'timed-read', 'timed-run', 'timedatectl', 'timeout', 'tkcon', 'tkjpeg', 'tkmib', 'tknewsbiff', 'tload', 'toe', 'top', 'touch', 'tpm_sealdata', 'tpm_unsealdata', 'tput', 'tr', 'trace', 'tracepath', 'tracepath6', 'traptoemail', 'tree', 'troff', 'true', 'truncate', 'trust', 'tset', 'tshark', 'tsort', 'tty', 'turbostat', 'tzselect', 'ucs2any', 'udevadm', 'uil', 'ul', 'ulockmgr_server', 'umoci', 'umount', 'uname', 'uname26', 'unar', 'unbuffer', 'uncompress', 'unexpand', 'unicode_start', 'unicode_stop', 'uniq', 'unix-lpr.sh', 'unix2dos', 'unix2mac', 'unlink', 'unlz4', 'unlzma', 'unmunch', 'unmunge', 'unpack200', 'unpigz', 'unrar', 'unrar_wrapper', 'unshar', 'unshare', 'unsquashfs', 'unxz', 'unzip', 'unzip-plain', 'unzipsfx', 'unzipsfx-plain', 'update-desktop-database', 'update-mime-database', 'update-xml-catalog', 'updatedb', 'updateinfoxml2solv', 'updmap', 'updmap-sys', 'updmap-user', 'uptime', 'urlgrabber', 'usb-devices', 'usbhid-dump', 'users', 'ustar', 'utmpdump', 'uudecode', 'uuencode', 'uuidgen', 'uuidparse', 'uxterm', 'uz', 'vacuumdb', 'vacuumlo', 'valgrind', 'valgrind-di-server', 'valgrind-listener', 'vdir', 'vdltodmx', 'verify_blkparse', 'vgdb', 'vi', 'view', 'vim', 'vim-nox11', 'vimdiff', 'vimtutor', 'vitmp', 'vlock', 'vmstat', 'vncconfig', 'vncpasswd', 'vncpasswd.arg', 'vncserver', 'vttest', 'vtysh', 'w', 'w3m', 'w3mman', 'wall', 'watch', 'watchgnupg', 'wayland-scanner', 'wbemai', 'wbemain', 'wbemcat', 'wbemci', 'wbemcli', 'wbemcli.py', 'wbemcli.py-2.7', 'wbemcli.py-3.6', 'wbemcm', 'wbemcmx', 'wbemdc', 'wbemdi', 'wbemec', 'wbemecn', 'wbemei', 'wbemein', 'wbemgc', 'wbemgcd', 'wbemgi', 'wbemgp', 'wbemmi', 'wbemri', 'wbemrin', 'wbemsp', 'wbinfo', 'wbmptopbm', 'wc', 'wdctl', 'webpng', 'westcos-tool', 'wget', 'whatis', 'whereis', 'which', 'who', 'whoami', 'whois', 'widget', 'winicontopam', 'winicontoppm', 'wish', 'wish8.6', 'wmidump', 'wmixtract', 'wordforms', 'wordlist2hunspell', 'write', 'x026', 'x0vncserver', 'x3270', 'x3270if', 'x86_64', 'x86_64-suse-linux-gnu-pkg-config', 'x86_energy_perf_policy', 'xargs', 'xauth', 'xbmtopbm', 'xconsole', 'xdg-desktop-icon', 'xdg-desktop-menu', 'xdg-email', 'xdg-icon-resource', 'xdg-mime', 'xdg-open', 'xdg-screensaver', 'xdg-settings', 'xdg-su', 'xdg-terminal', 'xdg_menu', 'xdg_menu_su', 'xdm', 'xdmxconfig', 'xf86debug', 'xgettext', 'xhost', 'xid_logger.sh', 'ximtoppm', 'xinit', 'xkbcomp', 'xkibitz', 'xli', 'xlito', 'xloadimage', 'xmessage', 'xmkmf', 'xml2-config', 'xml_grep', 'xml_merge', 'xml_pp', 'xml_spellcheck', 'xml_split', 'xmlcatalog', 'xmllint', 'xmltest', 'xmlwf', 'xmodmap', 'xorg-backtrace', 'xpath', 'xpmtoppm', 'xprop', 'xpstat', 'xrdb', 'xscreensaver', 'xscreensaver-command', 'xscreensaver-demo', 'xscreensaver-gl-helper', 'xset', 'xsetbg', 'xsetroot', 'xslt-config', 'xsltproc', 'xsubpp', 'xterm', 'xtermset', 'xview', 'xvminitoppm', 'xwdtopnm', 'xxd', 'xz', 'xzcat', 'xzcmp', 'xzdec', 'xzdiff', 'xzegrep', 'xzfgrep', 'xzgrep', 'xzless', 'xzmore', 'xznew', 'yacc', 'yat2m', 'ybmtopbm', 'yelp', 'yes', 'ypcat', 'ypchfn', 'ypchsh', 'ypdomainname', 'ypmatch', 'yppasswd', 'ypwhich', 'yuvsplittoppm', 'yuvtoppm', 'yuy2topam', 'yzpper', 'zcat', 'zcmp', 'zdiff', 'zegrep', 'zeisstopnm', 'zenity', 'zfgrep', 'zforce', 'zgrep', 'zip', 'zipcloak', 'zipdetails', 'zipgrep', 'zipgrep-plain', 'zipinfo', 'zipnote', 'zipsplit', 'zless', 'zmore', 'znew', 'zoo', 'zsh', 'zypp-CheckAccessDeleted', 'zypp-NameReqPrv', 'zypper'] ['arch', 'awk', 'basename', 'bash', 'blkparse', 'blktrace', 'btrace', 'cat', 'chgrp', 'chmod', 'chown', 'chvt', 'clrunimap', 'cp', 'cpio', 'csh', 'date', 'dbus-cleanup-sockets', 'dbus-daemon', 'dbus-monitor', 'dbus-send', 'dbus-test-tool', 'dbus-update-activation-environment', 'dbus-uuidgen', 'dd', 'dd_rescue', 'deallocvt', 'df', 'dmesg', 'dnsdomainname', 'domainname', 'dumpkeys', 'echo', 'ed', 'egrep', 'ex', 'false', 'fgconsole', 'fgrep', 'fillup', 'find', 'findmnt', 'fsync', 'fuser', 'gawk', 'getkeycodes', 'getunimap', 'grep', 'guess_encoding', 'gunzip', 'gzip', 'hostname', 'ifconfig', 'initviocons', 'ip', 'kbd_mode', 'kbdinfo', 'kbdrate', 'keyctl', 'kill', 'ksh', 'lksh', 'ln', 'loadkeys', 'loadunimap', 'logger', 'login', 'ls', 'lsblk', 'lsmod', 'mail', 'mapscrn', 'md5sum', 'mkdir', 'mknod', 'mksh', 'mktemp', 'more', 'mount', 'mv', 'netstat', 'nisdomainname', 'openvt', 'outpsfheader', 'pdksh', 'pgrep', 'pidof', 'ping', 'ping6', 'pkill', 'ps', 'psfaddtable', 'psfgettable', 'psfstriptable', 'psfxtable', 'pwd', 'readlink', 'resizecons', 'rm', 'rmdir', 'route', 'rpm', 'screendump', 'sed', 'setfont', 'setkeycodes', 'setleds', 'setlogcons', 'setmetamode', 'setpalette', 'setvesablank', 'setvtrgb', 'sh', 'showconsolefont', 'showkey', 'sleep', 'sort', 'spawn_console', 'spawn_login', 'stat', 'stty', 'su', 'sync', 'systemctl', 'systemd', 'systemd-ask-password', 'tar', 'tcsh', 'touch', 'tracepath', 'tracepath6', 'true', 'umount', 'uname', 'unicode_start', 'unicode_stop', 'usleep', 'vi', 'vim', 'ypdomainname', 'zcat', 'zsh'] ['gss-client', 'k5srvutil', 'kadmin', 'kdestroy', 'kinit', 'klist', 'kpasswd', 'krb5-config', 'ksu', 'kswitch', 'ktutil', 'kvno', 'sclient', 'sim_client', 'uuclient'] ['krb5-send-pr'] ['csmlversion', 'pe_cleanup_callback.sh', 'pe_postmount_callback.sh', 'pe_setup_callback.sh', 'set-gcc-libs', 'set_default', 'setup_shell_rcs.sh'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.packages.c2html 0.051598 ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.008122 ================================================================================ TEST alternateConfigureLibrary from config.packages.silo(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.007371 ================================================================================ TEST alternateConfigureLibrary from config.packages.Random123(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.006212 ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.006088 ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.004837 ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.005259 ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.005520 ================================================================================ TEST checkDependencies from config.packages.regex(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.regex(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ================================================================================ TEST check from config.libraries(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-31tiaa71/config.libraries/conftest.o -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.compilers -I/tmp/petsc-31tiaa71/config.utilities.closure -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.utilities.cacheDetails -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.functions -I/tmp/petsc-31tiaa71/config.utilities.featureTestMacros -I/tmp/petsc-31tiaa71/config.utilities.missing -I/tmp/petsc-31tiaa71/PETSc.options.scalarTypes -I/tmp/petsc-31tiaa71/config.libraries -I/tmp/petsc-31tiaa71/config.packages.MPI -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-31tiaa71/config.libraries/conftest -fPIC -g -O2 /tmp/petsc-31tiaa71/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Found header files [] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking for headers ['regex.h'] in Compiler specific search REGEX: ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkInclude from config.headers(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-31tiaa71/config.setCompilers -I/tmp/petsc-31tiaa71/config.types -I/tmp/petsc-31tiaa71/config.headers -I/tmp/petsc-31tiaa71/config.packages.MPI -I/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include -I/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include -I/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include -I/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include -I/opt/cray/pe/pmi/5.0.14/include -I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include -I/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include -I/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include -I/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include -I/opt/cray-hss-devel/9.0.0/include /tmp/petsc-31tiaa71/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['regex.h'] in ['/opt/cray/pe/mpt/7.7.10/gni/mpich-intel/16.0/include', '/opt/cray/rca/2.2.20-7.0.1.1_4.46__g8e3fb5b.ari/include', '/opt/cray/alps/6.6.58-7.0.1.1_6.4__g437d88db.ari/include', '/opt/cray/xpmem/2.2.20-7.0.1.1_4.10__g0475745.ari/include', '/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.28__g3b1768f.ari/include', '/opt/cray/pe/pmi/5.0.14/include', '/opt/cray/ugni/6.0.14.0-7.0.1.1_7.33__ge78e5b0.ari/include', '/opt/cray/udreg/2.3.2-7.0.1.1_3.31__g8175d3d.ari/include', '/opt/cray/wlm_detect/1.3.3-7.0.1.1_4.13__g7109084.ari/include', '/opt/cray/krca/2.2.6-7.0.1.1_5.35__gb641b12.ari/include', '/opt/cray-hss-devel/9.0.0/include'] ================================================================================ TEST checkVersion from config.packages.regex(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.regex(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.regex 12.363124 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.009124 ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.007471 ================================================================================ TEST alternateConfigureLibrary from config.packages.CoDiPack(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.006780 ================================================================================ TEST alternateConfigureLibrary from config.packages.adblaslapack(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.006393 ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.005647 child config.packages.cxxlibs 0.000075 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADOLC(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.007900 ================================================================================ TEST locateCMake from config.packages.cmake(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/cmake.py:42) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:42) Looking for default CMake executable Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/cmake...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/cmake...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/cmake...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cmake...found Defined make macro "CMAKE" to "/global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cmake" Looking for default CTest executable Checking for program /usr/common/software/allinea-forge/20.1-Suse-15.0-x86_64/bin/ctest...not found Checking for program /usr/common/software/python/3.7-anaconda-2019.10/bin/ctest...not found Checking for program /global/common/sw/cray/sles15/x86_64/zlib/1.2.11/gcc/8.2.0/pep2pal/bin/ctest...not found Checking for program /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/ctest...found Defined make macro "CTEST" to "/global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/ctest" Running Executable WITHOUT threads to time it out Executing: /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cmake --version stdout: cmake version 3.14.4 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.14.4 child config.packages.cmake 0.320917 ================================================================================ TEST alternateConfigureLibrary from config.packages.googletest(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.007765 ================================================================================ TEST alternateConfigureLibrary from config.packages.unittestcpp(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.006544 ================================================================================ TEST alternateConfigureLibrary from config.packages.eigen(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.006771 ================================================================================ TEST alternateConfigureLibrary from config.packages.szlib(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.006336 ================================================================================ TEST alternateConfigureLibrary from config.packages.zlib(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.zlib 0.007312 child config.packages.mathlib 0.000087 ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.007588 ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.007514 ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.007718 ================================================================================ TEST alternateConfigureLibrary from config.packages.libpng(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.007778 ================================================================================ TEST alternateConfigureLibrary from config.packages.combblas(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.009759 ================================================================================ TEST checkDependencies from config.packages.metis(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.metis(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.metis(/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/metis.py:49) TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/packages/metis.py:49) ================================================================================== Checking for a functional metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Could not locate an existing copy of METIS: ['git.sowing'] Downloading metis =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-metis.git for METIS =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://bitbucket.org/petsc/pkg-metis.git /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Found a copy of METIS in git.metis Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', 'v5.1.0-p8^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', 'v5.1.0-p8'] stdout: ca7a59e6283f608d3e0d8a9d500838afb7f4339a Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', 'ca7a59e6283f608d3e0d8a9d500838afb7f4339a'] METIS was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Configuring METIS with cmake, this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/global/common/software/m1041/petsc_install/petsc_knl_intel -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="cc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -g -O2" -DCMAKE_C_FLAGS_DEBUG:STRING="-fPIC -g -O2" -DCMAKE_C_FLAGS_RELEASE:STRING="-fPIC -g -O2" -DCMAKE_CXX_COMPILER="CC" -DCMAKE_CXX_FLAGS:STRING="-g -O2 -fPIC" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-g -O2 -fPIC" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-g -O2 -fPIC" -DCMAKE_Fortran_COMPILER="ftn" -DCMAKE_Fortran_FLAGS:STRING="-fPIC -g -O2" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-fPIC -g -O2" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-fPIC -g -O2" -DBUILD_SHARED_LIBS=on -DGKLIB_PATH=../GKlib -DGKRAND=1 -DSHARED=1 -DMETIS_USE_LONGINDEX=1 -DMATH_LIB="" stdout: -- The C compiler identification is Intel 19.0.0.20190206 -- Cray Programming Environment 2.6.2 C -- Check for working C compiler: /opt/cray/pe/craype/2.6.2/bin/cc -- Check for working C compiler: /opt/cray/pe/craype/2.6.2/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for getline -- Looking for getline - found -- Configuring done -- Generating done -- Build files have been written to: /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build =============================================================================== Compiling and installing METIS; this may take several minutes =============================================================================== =============================================================================== You do not have write permissions to the --prefix directory /global/common/software/m1041/petsc_install/petsc_knl_intel You will be prompted for the sudo password for any external package installs =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/gmake -j102 -l324.8 stdout: /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cmake -S/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis -B/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cmake -E cmake_progress_start /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/CMakeFiles /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build' cd /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build && /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cmake -E cmake_depends "Unix Makefiles" /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/libmetis /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build' [ 3%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o cd /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis && /opt/cray/pe/craype/2.6.2/bin/cc -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/include -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/libmetis/. -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/include -fPIC -g -O2 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -o CMakeFiles/metis.dir/__/GKlib/blas.c.o -c /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib/blas.c [ 3%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/b64.c.o cd /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis && /opt/cray/pe/craype/2.6.2/bin/cc -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/include -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/libmetis/. -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/include -fPIC -g -O2 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -o CMakeFiles/metis.dir/__/GKlib/b64.c.o -c /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib/b64.c [ 4%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/csr.c.o cd /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis && /opt/cray/pe/craype/2.6.2/bin/cc -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/include -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/libmetis/. -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/include -fPIC -g -O2 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -o CMakeFiles/metis.dir/__/GKlib/csr.c.o -c /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib/csr.c [ 8%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/error.c.o cd /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis && /opt/cray/pe/craype/2.6.2/bin/cc -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/include -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/libmetis/. -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/include -fPIC -g -O2 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -o CMakeFiles/metis.dir/__/GKlib/error.c.o -c /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib/error.c [ 12%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/evaluate.c.o cd /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis && /opt/cray/pe/craype/2.6.2/bin/cc -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/include -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/libmetis/. -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/include -fPIC -g -O2 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o -c /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib/evaluate.c [ 14%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fs.c.o cd 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-I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/include -fPIC -g -O2 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -o CMakeFiles/metis.dir/meshpart.c.o -c /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/libmetis/meshpart.c cd /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis && /opt/cray/pe/craype/2.6.2/bin/cc -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/include -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/libmetis/. -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/include -fPIC -g -O2 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG 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/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis && /opt/cray/pe/craype/2.6.2/bin/cc -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/GKlib -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/include -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/libmetis/. -I/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/include -fPIC -g -O2 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -o CMakeFiles/metis.dir/mmd.c.o -c /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/libmetis/mmd.c [100%] Linking C static library libmetis.a cd /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis && /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cmake -P CMakeFiles/metis.dir/cmake_clean_target.cmake cd /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/libmetis && /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cmake -E cmake_link_script CMakeFiles/metis.dir/link.txt --verbose=1 /usr/bin/ar qc libmetis.a CMakeFiles/metis.dir/__/GKlib/b64.c.o CMakeFiles/metis.dir/__/GKlib/blas.c.o CMakeFiles/metis.dir/__/GKlib/csr.c.o CMakeFiles/metis.dir/__/GKlib/error.c.o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o CMakeFiles/metis.dir/__/GKlib/fs.c.o CMakeFiles/metis.dir/__/GKlib/getopt.c.o CMakeFiles/metis.dir/__/GKlib/gkregex.c.o CMakeFiles/metis.dir/__/GKlib/graph.c.o CMakeFiles/metis.dir/__/GKlib/htable.c.o CMakeFiles/metis.dir/__/GKlib/io.c.o CMakeFiles/metis.dir/__/GKlib/itemsets.c.o CMakeFiles/metis.dir/__/GKlib/mcore.c.o 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CMakeFiles/metis.dir/kwayrefine.c.o CMakeFiles/metis.dir/mcutil.c.o CMakeFiles/metis.dir/mesh.c.o CMakeFiles/metis.dir/meshpart.c.o CMakeFiles/metis.dir/minconn.c.o CMakeFiles/metis.dir/mincover.c.o CMakeFiles/metis.dir/mmd.c.o CMakeFiles/metis.dir/ometis.c.o CMakeFiles/metis.dir/options.c.o CMakeFiles/metis.dir/parmetis.c.o CMakeFiles/metis.dir/pmetis.c.o CMakeFiles/metis.dir/refine.c.o CMakeFiles/metis.dir/separator.c.o CMakeFiles/metis.dir/sfm.c.o CMakeFiles/metis.dir/srefine.c.o CMakeFiles/metis.dir/stat.c.o CMakeFiles/metis.dir/timing.c.o CMakeFiles/metis.dir/util.c.o CMakeFiles/metis.dir/wspace.c.o /usr/bin/ranlib libmetis.a gmake[2]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build' [100%] Built target metis gmake[1]: Leaving directory '/global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build' /global/common/sw/cray/cnl7/haswell/cmake/3.14.4/gcc/8.2.0/2hef55n/bin/cmake -E cmake_progress_start /global/u2/m/madams/petsc_install/petsc/arch-cori-knl-opt-intel/externalpackages/git.metis/petsc-build/CMakeFiles 0 Running Executable WITHOUT threads to time it out Executing: sudo /usr/bin/gmake install Error running make on METIS: Could not execute "['sudo /usr/bin/gmake install']": /bin/sh: sudo: command not found **** Configure header /tmp/petsc-31tiaa71/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_HAVE_C99 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE___INT64 1 #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USE_64BIT_INDICES 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_VERSION_BRANCH_GIT "maint" #define PETSC_VERSION_DATE_GIT "2020-07-09 19:51:57 +0000" #define PETSC_VERSION_GIT "v3.13.3-18-g206d3fccd5" #define PETSC_HAVE_MPICH_NUMVERSION 30200300 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_Alignx(a,b) #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_MEMALIGN 16 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_PYTHON_EXE "/usr/common/software/python/3.7-anaconda-2019.10/bin/python" #endif **** C specific Configure header /tmp/petsc-31tiaa71/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running make on METIS ******************************************************************************* File "/global/u2/m/madams/petsc_install/petsc/config/configure.py", line 451, in petsc_configure framework.configure(out = sys.stdout) File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/framework.py", line 1251, in configure self.processChildren() File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/framework.py", line 1240, in processChildren self.serialEvaluation(self.childGraph) File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/framework.py", line 1215, in serialEvaluation child.configure() File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py", line 1110, in configure self.executeTest(self.configureLibrary) File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/base.py", line 139, in executeTest ret = test(*args,**kargs) File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/packages/metis.py", line 50, in configureLibrary config.package.Package.configureLibrary(self) File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py", line 875, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py", line 453, in generateGuesses d = self.checkDownload() File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py", line 587, in checkDownload return self.getInstallDir() File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py", line 342, in getInstallDir installDir = self.Install() File "/global/u2/m/madams/petsc_install/petsc/config/BuildSystem/config/package.py", line 1745, in Install raise RuntimeError('Error running make on '+self.PACKAGE) ================================================================================ Finishing configure run at Tue, 14 Jul 2020 19:35:45 -0700 ================================================================================