================================================================================ ================================================================================ Starting configure run at Thu, 18 Jun 2020 16:47:01 -0700 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions COPTFLAGS=" -O2" CXXOPTFLAGS=" -O2" FOPTFLAGS=" -O2" --download-metis=1 --download-parmetis=1 --download-fblaslapack=1 --with-cc=cc --with-cxx=CC --with-debugging=0 --with-mpiexec=srun --with-batch=0 --with-cuda=1 --download-hdf5=1 --with-zlib=1 PETSC_ARCH=arch-cori-gpu-opt-intel --with-openmp=0 --with-64-bit-indices=0 Working directory: /global/u2/m/madams/petsc Machine platform: ('Linux', 'cgpu03', '4.12.14-lp150.12.79-default', '#1 SMP Wed Oct 23 05:26:19 UTC 2019 (8cbc240)', 'x86_64', 'x86_64') Python version: 2.7.14 (default, Oct 12 2017, 15:50:02) [GCC] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/global/u2/m/madams/petsc/config/BuildSystem/config/framework.py:926) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:926) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking for program /opt/esslurm/bin/gdb...not found Checking for program /usr/common/software/mvapich2/2.3.2/intel/19.0.3.199/cuda/10.2.89/bin/gdb...not found Checking for program /usr/common/software/cuda/10.2.89/NsightSystems-2020.1.1.65/bin/gdb...not found Checking for program /usr/common/software/cuda/10.2.89/bin/gdb...not found Checking for program /global/common/cori_cle7/software/jdk/1.8.0_202/bin/gdb...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari/bin/gdb...not found Checking for program /opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/sbin/gdb...not found Checking for program /opt/cray/alps/default/bin/gdb...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.34__g36b56f4.ari/bin/gdb...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/gdb...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/gdb...not found Checking for program /usr/common/software/bin/gdb...not found Checking for program /usr/common/mss/bin/gdb...not found Checking for program /usr/common/nsg/bin/gdb...not found Checking for program /opt/ovis/bin/gdb...not found Checking for program /opt/ovis/sbin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" child config.utilities.debuggers 0.019006 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/global/u2/m/madams/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 13 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.003144 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/global/u2/m/madams/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000282 ================================================================================ TEST configureGit from config.sourceControl(/global/u2/m/madams/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /opt/esslurm/bin/git...not found Checking for program /usr/common/software/mvapich2/2.3.2/intel/19.0.3.199/cuda/10.2.89/bin/git...not found Checking for program /usr/common/software/cuda/10.2.89/NsightSystems-2020.1.1.65/bin/git...not found Checking for program /usr/common/software/cuda/10.2.89/bin/git...not found Checking for program /global/common/cori_cle7/software/jdk/1.8.0_202/bin/git...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari/bin/git...not found Checking for program /opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/sbin/git...not found Checking for program /opt/cray/alps/default/bin/git...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.34__g36b56f4.ari/bin/git...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/git...not found Checking for program /opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64/git...not found Checking for program /usr/common/software/bin/git...not found Checking for program /usr/common/mss/bin/git...not found Checking for program /usr/common/nsg/bin/git...not found Checking for program /opt/ovis/bin/git...not found Checking for program /opt/ovis/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 2.16.4 child config.sourceControl 0.010216 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/global/u2/m/madams/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Running Executable WITHOUT threads to time it out Executing: ['git', 'describe', '--match=v*'] stdout: v3.13.2-39-g6db8396a43 Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 6db8396a43530876b7b93b4211bddf03e3112813 Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2020-06-18 18:39:57 -0500 Running Executable WITHOUT threads to time it out Executing: ['git', 'branch'] stdout: adams/feature-dmplex-snes-landau * barry/2020-06-18/filter-nersc-cray/maint maint mark/feature-xgc-interface mark/feature-xgc-interface-rebase master Defined "VERSION_GIT" to ""v3.13.2-39-g6db8396a43"" Defined "VERSION_DATE_GIT" to ""2020-06-18 18:39:57 -0500"" Defined "VERSION_BRANCH_GIT" to ""barry/2020-06-18/filter-nersc-cray/maint"" child PETSc.options.petscclone 0.109134 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/global/u2/m/madams/petsc/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/global/u2/m/madams/petsc/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set =============================================================================== Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-cori-gpu-opt-intel, ignoring environment: arch-cori-haswell-dbg-intel =============================================================================== No previous hashfile found Setting hashfile: arch-cori-gpu-opt-intel/lib/petsc/conf/configure-hash Deleting configure hash file: arch-cori-gpu-opt-intel/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-cori-gpu-opt-intel/lib/petsc/conf/configure-hash child PETSc.options.arch 0.019629 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/global/homes/m/madams/petsc/arch-cori-gpu-opt-intel" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:80) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:80) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:73) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:73) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:57) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:57) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /global/homes/m/madams/petsc/arch-cori-gpu-opt-intel/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:93) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:93) child PETSc.options.installDir 0.001032 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/global/u2/m/madams/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/global/u2/m/madams/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000220 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/global/u2/m/madams/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000644 ================================================================================ TEST printEnvVariables from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1725) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1725) **** printenv **** OLDPWD=/global/homes/m/madams PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU= CRAY_LIBSCI_BASE_DIR=/opt/cray/pe/libsci/19.06.1 CPU=x86_64 PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/petsc/3.11.2.0/complex/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_TRILINOS:PE_TPSL_64:PE_TPSL:PE_PETSC:PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_NETCDF:PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_HDF5:PE_GA:PE_FFTW2:PE_FFTW PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=9.0 PE_FFTW_DEFAULT_TARGET_share=share HISTSIZE=1000 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64=190 ATP_HOME=/opt/cray/pe/atp/2.1.3 PE_LIBSCI_GENCOMPS_CRAYCLANG_x86_64=90 JAVA_HOME=/global/common/cori_cle7/software/jdk/1.8.0_202 CUDNN_VERSION=7.6.5 SLURM_CPU_BIND_VERBOSE=quiet craype_already_loaded=0 KMP_AFFINITY=balanced PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/19.06.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig FPATH=:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.11.4/init/sh_funcs/no_redirect PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig SLURM_PTY_PORT=64183 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5/1.10.5.2/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig ZAP_LIBPATH=/opt/ovis/lib64/ovis-lib XDG_SESSION_ID=127447 PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/trilinos/12.14.1.0/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_x86_skylake=x86_skylake SLURM_PRIO_PROCESS=0 PE_SMA_DEFAULT_DIR_PGI_DEFAULT64=64 CSCRATCH=/global/cscratch1/sd/madams KSH_AUTOLOAD=1 SLURM_LOCALID=0 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 CSHEDIT=emacs PE_TRILINOS_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-7.0.1.1_3.29__g8175d3d.ari/include USER=madams PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=160 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 JDK_HOME=/usr/lib64/jvm/java PE_HDF5_DEFAULT_GENCOMPS_GNU= PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 CRAY_LIBSCI_DIR=/opt/cray/pe/libsci/19.06.1 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 JAVA_BINDIR=/global/common/cori_cle7/software/jdk/1.8.0_202/bin PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 PE_LIBSCI_DEFAULT_OMP_REQUIRES= PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf/4.6.3.2/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig PE_LIBSCI_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=90 DEBUG=1 PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge=90 TMPDIR=/tmp PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/19.06.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/ga/5.3.0.10/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig XDG_DATA_DIRS=/usr/share PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU= _LMFILES_=/opt/modulefiles/intel/19.0.3.199:/opt/cray/pe/modulefiles/craype/2.6.2:/opt/cray/pe/craype/2.6.2/modulefiles/craype-network-aries:/opt/cray/pe/modulefiles/cray-libsci/19.06.1:/opt/cray/ari/modulefiles/udreg/2.3.2-7.0.1.1_3.29__g8175d3d.ari:/opt/cray/ari/modulefiles/ugni/6.0.14.0-7.0.1.1_7.32__ge78e5b0.ari:/opt/cray/pe/modulefiles/pmi/5.0.14:/opt/cray/ari/modulefiles/dmapp/7.1.1-7.0.1.1_4.43__g38cf134.ari:/opt/cray/ari/modulefiles/gni-headers/5.0.12.0-7.0.1.1_6.27__g3b1768f.ari:/opt/cray/ari/modulefiles/xpmem/2.2.20-7.0.1.1_4.8__g0475745.ari:/opt/cray/ari/modulefiles/job/2.2.4-7.0.1.1_3.34__g36b56f4.ari:/opt/cray/ari/modulefiles/dvs/2.12_2.2.156-7.0.1.1_8.6__g5aab709e:/opt/cray/ari/modulefiles/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari:/opt/cray/ari/modulefiles/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari:/opt/cray/pe/modulefiles/atp/2.1.3:/opt/cray/pe/modulefiles/PrgEnv-intel/6.0.5:/usr/common/software/modulefiles/jdk/1.8.0_202:/usr/common/software/modulefiles/cudnn/7.6.5:/usr/common/software/modulefiles/cuda/10.2.89:/usr/common/software/modulefiles/mvapich2/2.3.2:/usr/common/software/modulefiles/esslurm MODULE_VERSION=3.2.11.4 LIBSCI_VERSION=19.06.1 CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/2.2.20-7.0.1.1_4.8__g0475745.ari/include PE_MPICH_DEFAULT_DIR_CRAYCLANG_DEFAULT64=64 CUDA_VERSION=10.2.89 PE_MPICH_DEFAULT_GENCOMPS_GNU=82 81 71 HOME=/global/homes/m/madams BASH_ENV=/global/homes/m/madams/.bashrc PE_MPICH_TARGET_VAR_nvidia35=-lcudart SLURM_JOB_QOS=gpu_interactive PE_GA_DEFAULT_FIXED_PRGENV=CRAY INTEL DVS_MAXNODES=1__ PE_GA_DEFAULT_GENCOMPILERS_GNU=8.2 7.3 SLURM_PROCID=0 PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda ATP_IGNORE_SIGTERM=1 HOST=cori08 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU LAND_LIB=-L/lib64 -littnotify SLURM_CPUS_ON_NODE=2 PE_MPICH_DEFAULT_GENCOMPILERS_GNU=8.2 8.1 7.1 CRAY_LIBSCI_VERSION=19.06.1 MAN_POSIXLY_CORRECT=1 FEAP_DIR=/global/homes/m/madams/olympus-keaveny/Feap75_Olympus PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/fftw/3.3.8.4/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=190 NERSC_HOST=cori INTEL_MINOR_VERSION=19 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig SLURM_STEP_ID=0 JRE_HOME=/usr/lib64/jvm/java SLURMD_NODENAME=cgpu03 PE_MPICH_DEFAULT_GENCOMPILERS_CRAYCLANG=9.0 PE_FFTW_DEFAULT_TARGET_x86_cascadelake=x86_cascadelake PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=81 71 PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL LIBGL_ALWAYS_INDIRECT=1 PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.10/gni/sma@PE_SMA_DEFAULT_DIR_DEFAULT64@/lib64/pkgconfig PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 SLURM_TOPOLOGY_ADDR=cgpu03 SLURM_PTY_WIN_ROW=102 SLURM_DISTRIBUTION=block PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_ALTERNATE_LIBS_@multithreaded@:PE_MPICH_ALTERNATE_LIBS_@dpm@ LIBSCI_BASE_DIR=/opt/cray/pe/libsci/19.06.1 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 SLURM_SUBMIT_HOST=cori08 ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/pe/atp/2.1.3/libApp/ PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5-parallel/1.10.5.2/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_GA_DEFAULT_VOLATILE_PRGENV=GNU PE_FFTW_DEFAULT_TARGET_broadwell=broadwell LOADEDMODULES=intel/19.0.3.199:craype/2.6.2:craype-network-aries:cray-libsci/19.06.1:udreg/2.3.2-7.0.1.1_3.29__g8175d3d.ari:ugni/6.0.14.0-7.0.1.1_7.32__ge78e5b0.ari:pmi/5.0.14:dmapp/7.1.1-7.0.1.1_4.43__g38cf134.ari:gni-headers/5.0.12.0-7.0.1.1_6.27__g3b1768f.ari:xpmem/2.2.20-7.0.1.1_4.8__g0475745.ari:job/2.2.4-7.0.1.1_3.34__g36b56f4.ari:dvs/2.12_2.2.156-7.0.1.1_8.6__g5aab709e:alps/6.6.57-7.0.1.1_5.10__g1b735148.ari:rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari:atp/2.1.3:PrgEnv-intel/6.0.5:jdk/1.8.0_202:cudnn/7.6.5:cuda/10.2.89:mvapich2/2.3.2:esslurm PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=190 PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ PE_PAPI_ACCEL_FAMILY_LIBS_@accelerator_family@ PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 CRAY_LD_LIBRARY_PATH=/opt/cray/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari/lib64:/opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/lib64:/opt/cray/xpmem/2.2.20-7.0.1.1_4.8__g0475745.ari/lib64:/opt/cray/dmapp/7.1.1-7.0.1.1_4.43__g38cf134.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.32__ge78e5b0.ari/lib64:/opt/cray/udreg/2.3.2-7.0.1.1_3.29__g8175d3d.ari/lib64:/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64/lib PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAYCLANG GNU INTEL CFS=/global/cfs/cdirs PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY CRAYCLANG GNU INTEL PE_PAPI_DEFAULT_ACCEL_LIBS= PYTHONPATH=/opt/ovis/lib/python2.7/site-packages LESS=-M -I -R MV2_IBA_HCA=mlx5_0:mlx5_2:mlx5_4:mlx5_6 PE_LIBSCI_GENCOMPILERS_GNU_x86_64=8.1 7.1 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 CRAYPE_NETWORK_TARGET=aries USERMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:acml:alps:apprentice:apprentice2:atp:blcr:cce:chapel:cray-ccdb:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-lgdb:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-compat:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-snplauncher:cray-tpsl:cray-trilinos:craypat:craype:craypkg-gen:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:perftools-lite:petsc:petsc-complex:pgi:pmi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview XKEYSYMDB=/usr/X11R6/lib/X11/XKeysymDB SLURM_JOB_USER=madams PAT_RT_HWPC=1 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 SLURM_PTY_WIN_COL=211 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 SLURM_STEPID=0 PE_PKGCONFIG_PRODUCTS=PE_LIBSCI PE_LIBSCI_MODULE_NAME=cray-libsci/19.06.1 PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PELOCAL_PRGENV=true SLURM_UMASK=0007 TARGETMODULES=craype-abudhabi:craype-abudhabi-cu:craype-accel-host:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-broadwell:craype-haswell:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages32M:craype-hugepages4M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-intel-knc:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-mc12:craype-mc8:craype-mic-knl:craype-network-aries:craype-network-gemini:craype-network-infiniband:craype-network-none:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon PE_PAPI_DEFAULT_ACCEL_FAMILY_LIBS_nvidia=,-lcupti,-lcudart,-lcuda SLURM_GTIDS=0 CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.1.1-7.0.1.1_4.43__g38cf134.ari/lib64 SLURM_JOB_NAME=sh PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.xz=00;31:*.avi=01;35:*.bmp=01;35:*.dl=01;35:*.fli=01;35:*.gif=01;35:*.gl=01;35:*.jpg=01;35:*.jpeg=01;35:*.mkv=01;35:*.mng=01;35:*.mov=01;35:*.mp4=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.svg=01;35:*.tga=01;35:*.tif=01;35:*.webm=01;35:*.webp=01;35:*.wmv=01;35:*.xbm=01;35:*.xcf=01;35:*.xpm=01;35:*.aiff=00;32:*.ape=00;32:*.au=00;32:*.flac=00;32:*.m4a=00;32:*.mid=00;32:*.mp3=00;32:*.mpc=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:*.wma=00;32:*.wv=00;32: PE_SMA_DEFAULT_COMPFLAG= PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=82 71 JAVA_ROOT=/global/common/cori_cle7/software/jdk/1.8.0_202 SLURM_SUBMIT_DIR=/global/u2/m/madams PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=90 CPATH=/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/include MODULE_VERSION_STACK=3.2.11.4 CMAKE_PREFIX_PATH=/usr/common/software/cuda/10.2.89:/usr/common/software/cudnn/7.6.5/cuda/10.2.89 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 SLURM_JOB_NODELIST=cgpu03 SLURM_CLUSTER_NAME=escori PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 SHLVL=3 CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/include PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/2.2.20-7.0.1.1_4.8__g0475745.ari/lib64 PETSC_DIR=/global/homes/m/madams/petsc PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_TPSL XTPE_NETWORK_TARGET=aries PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=190 LS_OPTIONS=-N --color=none -T 0 MODULEPATH=/opt/cray/ari/modulefiles:/opt/cray/pe/craype/2.6.2/modulefiles:/opt/cray/pe/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/usr/common/software/modulefiles:/usr/syscom/nsg/modulefiles:/usr/syscom/nsg/opt/modulefiles:/usr/common/ftg/modulefiles:/opt/cray/craype/default/modulefiles:/opt/cray/craype/default/modulefiles PE_HDF5_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_sandybridge=190 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64=90 PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 INTEL_LICENSE_FILE=28518@crayintel.licenses.nersc.gov:28518@intel.licenses.nersc.gov CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari/include -I/opt/cray/krca/2.2.6-7.0.1.1_5.32__gb641b12.ari/include -I/opt/cray-hss-devel/9.0.0/include PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 PE_MPICH_DEFAULT_GENCOMPS_CRAY=90 PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=90 SLURM_JOB_CPUS_PER_NODE=2 HUGETLB_VERBOSE=0 SLURM_JOB_GID=1013302 PE_FFTW_DEFAULT_TARGET_ivybridge=ivybridge PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.12_2.2.156-7.0.1.1_8.6__g5aab709e/include intel_already_loaded=1 CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/6.0.14.0-7.0.1.1_7.32__ge78e5b0.ari/lib64 SHMEM_ABORT_ON_ERROR=1 PKG_CONFIG_PATH_DEFAULT=/opt/cray/pe/papi/5.7.0.2/lib64/pkgconfig LESSOPEN=lessopen.sh %s PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 SSH_TTY=/dev/pts/192 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 SRUN_DEBUG=3 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=82 71 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL SLURM_STEP_NODELIST=cgpu03 PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=82 71 SSH_CLIENT=128.55.210.214 34506 22 LOGNAME=madams PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.10/gni/mpich-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig PATH=/opt/esslurm/bin:/usr/common/software/mvapich2/2.3.2/intel/19.0.3.199/cuda/10.2.89/bin:/usr/common/software/cuda/10.2.89/NsightSystems-2020.1.1.65/bin:/usr/common/software/cuda/10.2.89/bin:/global/common/cori_cle7/software/jdk/1.8.0_202/bin:/opt/cray/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari/bin:/opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/sbin:/opt/cray/alps/default/bin:/opt/cray/job/2.2.4-7.0.1.1_3.34__g36b56f4.ari/bin:/opt/cray/pe/craype/2.6.2/bin:/opt/intel/compilers_and_libraries_2019.3.199/linux/bin/intel64:/usr/common/software/bin:/usr/common/mss/bin:/usr/common/nsg/bin:/opt/ovis/bin:/opt/ovis/sbin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/pe/bin PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_haswell=190 PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH CRAY_PRE_COMPILE_OPTS=-hnetwork=aries PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 PE_FFTW2_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PE_LIBSCI_OMP_REQUIRES= PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/mpt/7.7.10/gni/mpich-INTEL/16.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/INTEL/19.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.10/INTEL/18.0/lib/pkgconfig SLURM_WORKING_CLUSTER=escori:corique01-144:6820:8704:109 SLURM_STEP_TASKS_PER_NODE=1 PE_SMA_DEFAULT_PKGCONFIG_VARIABLES=PE_SMA_COMPFLAG_@prgenv@ PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 PE_PAPI_DEFAULT_ACCELL_FAMILY_LIBS= PE_PKGCONFIG_LIBS=AtpSigHandler:cray-rca:libsci_mpi:libsci PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64=8.1 7.1 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=9.0 CRAYPE_DIR=/opt/cray/pe/craype/2.6.2 PE_CRAYCLANG_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/CRAYCLANG/9.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/CRAYCLANG/9.0/lib/pkgconfig INTEL_MAJOR_VERSION=19 SLURM_NODELIST=cgpu03 XGC_INSTALL_DIR=/project/projectdirs/m499/Software/petsc/master/cori_haswell/intel CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pe/pmi/5.0.14/include MANPATH=/usr/common/software/cuda/10.2.89/doc/man:/opt/cray/pe/atp/2.1.3/man:/opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/man:/opt/cray/job/2.2.4-7.0.1.1_3.34__g36b56f4.ari/man:/opt/cray/pe/pmi/5.0.14/man:/opt/cray/pe/libsci/19.06.1/man:/opt/cray/pe/man/csmlversion:/opt/cray/pe/craype/2.6.2/man:/opt/intel/compilers_and_libraries_2019.3.199/linux/man/common:/usr/common/software/man:/usr/common/mss/man:/usr/common/nsg/man:/usr/local/man:/usr/share/man:/usr/man:/opt/cray/share/man:/opt/cray/share/man:/opt/cray/share/man:/opt/cray/pe/man PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 PROFILEREAD=true PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 CUDNN_DIR=/usr/common/software/cudnn/7.6.5/cuda/10.2.89 SLURM_STEP_LAUNCHER_PORT=64184 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=90 MKLROOT=/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl HOSTNAME=cori08 PE_FFTW_DEFAULT_TARGET_mic_knl=mic_knl PETSC_ARCH=arch-cori-gpu-opt-intel PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=190 MACHTYPE=x86_64-suse-linux PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL BASH_FUNC_module%%=() { eval `/opt/cray/pe/modules/3.2.11.4/bin/modulecmd bash $*` } MINICOM=-c on PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI PE_MPICH_NV_LIBS= PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_haswell=9.0 CVS_RSH=ssh PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_skylake=9.0 PKGCONFIG_ENABLED=1 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell=82 71 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 SLURM_JOB_NUM_NODES=1 DVS_VERSION=0.9.0 LIBRARYMODULES=acml:alps:cray-dwarf:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-abi:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:libfast:netcdf:netcdf-hdf5parallel:ntk:onesided:papi:petsc:petsc-complex:pmi:tpsl:trilinos:xt-libsci:xt-mpich2:xt-mpt:xt-papi PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64=9.0 PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=90 PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=90 PE_MPICH_NV_LIBS_nvidia35=-lcudart PE_LIBSCI_GENCOMPS_CRAY_x86_64=90 XDG_CONFIG_DIRS=/etc/xdg PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 PE_TRILINOS_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PE_NETCDF_DEFAULT_GENCOMPS_GNU= PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 PAGER=less PE_TPSL_64_DEFAULT_GENCOMPS_CRAYCLANG_x86_skylake=90 PE_GA_DEFAULT_GENCOMPS_GNU=82 73 LIBGL_DEBUG=quiet CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pe/pmi/5.0.14/lib64 PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL ATP_MRNET_COMM_PATH=/opt/cray/pe/atp/2.1.3/libexec/atp_mrnet_commnode_wrapper PE_LIBSCI_GENCOMPILERS_INTEL_x86_64=16.0 LD_LIBRARY_PATH=/opt/esslurm/lib64:/usr/common/software/mvapich2/2.3.2/intel/19.0.3.199/cuda/10.2.89/lib:/usr/common/software/cuda/10.2.89/extras/CUPTI/lib64:/usr/common/software/cuda/10.2.89/lib64:/usr/common/software/cudnn/7.6.5/cuda/10.2.89/lib64:/global/common/cori_cle7/software/jdk/1.8.0_202/lib:/opt/cray/job/2.2.4-7.0.1.1_3.34__g36b56f4.ari/lib64:/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64:/usr/lib64:/usr/common/software/cuda/10.2.89/lib64/stubs SLURM_TASK_PID=40325 XGC_PLATFORM=cori_haswell GIT_PS1_SHOWUPSTREAM=auto CUDA_ROOT=/usr/common/software/cuda/10.2.89 CUDA_HOME=/usr/common/software/cuda/10.2.89 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 MVAPICH2_DIR=/usr/common/software/mvapich2/2.3.2/intel/19.0.3.199/cuda/10.2.89 SLURM_JOB_PARTITION=gpu SLURM_CPU_BIND_TYPE=mask_cpu: PE_LIBSCI_VOLATILE_PRGENV=CRAY CRAYCLANG GNU INTEL GPG_TTY=/dev/pts/0 IPM_REPORT=full FROM_HEADER= LESSCLOSE=lessclose.sh %s %s SLURM_SRUN_COMM_HOST=128.55.144.138 CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/lib64 PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 PE_MPICH_DEFAULT_GENCOMPILERS_CRAY=9.0 MORE=-sl PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp SLURM_JOBID=761309 HOSTTYPE=x86_64 CRAYPE_VERSION=2.6.2 SLURM_JOB_ACCOUNT=m1759 SLURM_CPU_BIND_LIST=0x00000000010000000001 TERM=xterm-256color PE_MPICH_ALTERNATE_LIBS_multithreaded=_mt PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.27__g3b1768f.ari/include PE_PKG_CONFIG_PATH=/opt/cray/pe/cti/1.0.9/lib/pkgconfig:/opt/cray/pe/cti/1.0.7/lib/pkgconfig PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.11.1.1/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.3.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.3.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.5.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.5.2/CRAY/9.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.10/CRAY/8.6/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 SILO_DIR=/global/homes/m/madams/olympus-keaveny/silo-4.10.2-bsd PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell=19.0 LESSKEY=/etc/lesskey.bin MV2_USE_CUDA=1 PWD=/global/homes/m/madams/petsc PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell=9.0 SLURM_STEP_RESV_PORTS=64385-64386 PE_SMA_DEFAULT_COMPFLAG_GNU=-fcray-pointer PE_MPICH_NV_LIBS_nvidia60=-lcudart INTEL_VERSION=19.0.3.199 PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/19.06.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_haswell=haswell PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci SHELL=/bin/bash PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU PE_MPICH_DEFAULT_GENCOMPS_CRAYCLANG=90 PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 LESS_ADVANCED_PREPROCESSOR=no PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=190 PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 SLURM_TASKS_PER_NODE=2 SVN_EDITOR=vim PRGENVMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pgi DMAPP_ABORT_ON_ERROR=1 XDG_RUNTIME_DIR=/run/user/13302 CUDA_PATH=/usr/common/software/cuda/10.2.89 PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge=9.0 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 MPICH_ABORT_ON_ERROR=1 PE_ENV=INTEL PE_PRODUCT_LIST=CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:CRAYPE:INTEL PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_sandybridge=90 PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=82 71 SDK_HOME=/usr/lib64/jvm/java SLURM_CPU_BIND=quiet,mask_cpu:0x00000000010000000001 SLURM_SRUN_COMM_PORT=64184 CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari/lib64 -lrca PE_MPICH_TARGET_VAR_nvidia20=-lcudart MAIL=/var/spool/mail/madams CSHRCREAD=true SSH_CONNECTION=128.55.210.214 34506 128.55.209.23 22 TOOLMODULES=apprentice:apprentice2:atp:chapel:cray-lgdb:cray-snplauncher:craypat:craypkg-gen:ddt:gdb:iobuf:papi:perftools:perftools-lite:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview SLURM_LAUNCH_NODE_IPADDR=128.55.144.138 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 OMP_NUM_THREADS=1 PE_TPSL_DEFAULT_GENCOMPS_CRAYCLANG_haswell=90 SLURM_STEP_NUM_NODES=1 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=90 SLURM_JOB_UID=13302 CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/6.0.14.0-7.0.1.1_7.32__ge78e5b0.ari/include INTEL_PATH=/opt/intel/compilers_and_libraries_2019.3.199 PE_PETSC_DEFAULT_GENCOMPS_CRAYCLANG_x86_64=90 PKG_CONFIG_PATH=/opt/cray/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari/lib64/pkgconfig:/opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/lib64/pkgconfig:/opt/cray/xpmem/2.2.20-7.0.1.1_4.8__g0475745.ari/lib64/pkgconfig:/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.27__g3b1768f.ari/lib64/pkgconfig:/opt/cray/dmapp/7.1.1-7.0.1.1_4.43__g38cf134.ari/lib64/pkgconfig:/opt/cray/pe/pmi/5.0.14/lib64/pkgconfig:/opt/cray/ugni/6.0.14.0-7.0.1.1_7.32__ge78e5b0.ari/lib64/pkgconfig:/opt/cray/udreg/2.3.2-7.0.1.1_3.29__g8175d3d.ari/lib64/pkgconfig:/opt/cray/pe/craype/2.6.2/pkg-config:/opt/cray/pe/iobuf/2.0.9/lib/pkgconfig:/opt/cray/pe/fftw/2.1.5.9/lib/pkgconfig:/opt/cray/pe/atp/2.1.3/lib/pkgconfig XNLSPATH=/usr/share/X11/nls _=../arch-cori-gpu-opt-intel.py SLURM_STEP_NUM_TASKS=1 PE_PETSC_DEFAULT_GENCOMPILERS_CRAYCLANG_sandybridge=9.0 PE_LIBSCI_GENCOMPS_INTEL_x86_64=160 WINDOWMANAGER=/usr/bin/gnome PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=82 71 MPICH_MPIIO_DVS_MAXNODES=28 COLORTERM=1 CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.1.1-7.0.1.1_4.43__g38cf134.ari/include -I/opt/cray/gni-headers/5.0.12.0-7.0.1.1_6.23__g3b1768f.ari/include PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge=19.0 GIT_PS1_SHOWDIRTYSTATE=1 G_BROKEN_FILENAMES=1 PE_MPICH_ALTERNATE_LIBS_dpm=_dpm QT_SYSTEM_DIR=/usr/share/desktop-data PE_MPICH_NV_LIBS_nvidia20=-lcudart DISPLAY=cori08:57.0 PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY CRAYCLANG INTEL LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=190 SLURM_GPUS=1 PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH OSTYPE=linux PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 PE_LIBSCI_GENCOMPILERS_CRAYCLANG_x86_64=9.0 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU= PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64=190 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=19.0 PE_HDF5_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH NLSPATH=/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/locale/%l_%t/%N SLURM_NODEID=0 PE_TPSL_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 SLURM_NNODES=1 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64=19.0 LDMSD_PLUGIN_LIBPATH=/opt/ovis/lib64/ovis-ldms PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_haswell=90 CRAY_LIBSCI_PREFIX_DIR=/opt/cray/pe/libsci/19.06.1/INTEL/16.0/x86_64 SLURM_TOPOLOGY_ADDR_PATTERN=node PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAYCLANG_x86_64=9.0 TZ=US/Pacific PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU=8.2 7.3 PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/19.06.1/@PRGENV@64/@PE_TPSL_64_DEFAULT_GENCOMPS@/@PE_TPSL_64_DEFAULT_TARGET@/lib/pkgconfig PE_LIBSCI_GENCOMPS_GNU_x86_64=81 71 PE_MPICH_DEFAULT_VOLATILE_PRGENV=GNU CRAYCLANG CRAY CRAY_PRGENVINTEL=loaded PE_TPSL_64_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 CRAYCLANG CRAYCLANG64 GNU GNU64 INTEL INTEL64 PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0 PE_LIBSCI_OMP_REQUIRES_openmp=_mp LAND_INC=-DHAVE_VTUNE -I/include -I/include SSH_AUTH_SOCK=/tmp/ssh-4vHfxhwDas/agent.38676 PE_NETCDF_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 CRAY_SITE_LIST_DIR=/etc/opt/cray/pe/modules RCLOCAL_PRGENV=true PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_skylake=90 SCRATCH=/global/cscratch1/sd/madams PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64=82 71 PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME SLURM_JOB_ID=761309 PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_skylake=190 CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-7.0.1.1_3.29__g8175d3d.ari/lib64 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1732) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1732) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1762) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1762) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1695) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1695) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:1716) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1716) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:460) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:460) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:635) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:635) Locate a functional C compiler Checking for program /opt/esslurm/bin/cc...not found Checking for program /usr/common/software/mvapich2/2.3.2/intel/19.0.3.199/cuda/10.2.89/bin/cc...not found Checking for program /usr/common/software/cuda/10.2.89/NsightSystems-2020.1.1.65/bin/cc...not found Checking for program /usr/common/software/cuda/10.2.89/bin/cc...not found Checking for program /global/common/cori_cle7/software/jdk/1.8.0_202/bin/cc...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/sbin/cc...not found Checking for program /opt/cray/alps/default/bin/cc...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.34__g36b56f4.ari/bin/cc...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/cc...found Defined make macro "CC" to "cc" All intermediate test results are stored in /tmp/petsc-BM_48O All intermediate test results are stored in /tmp/petsc-BM_48O/config.setCompilers Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-BM_48O/config.setCompilers/conftest.o -I/tmp/petsc-BM_48O/config.setCompilers /tmp/petsc-BM_48O/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-BM_48O/config.setCompilers/conftest.o -I/tmp/petsc-BM_48O/config.setCompilers /tmp/petsc-BM_48O/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-BM_48O/config.setCompilers/conftest /tmp/petsc-BM_48O/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-BM_48O/config.setCompilers/conftest.o -I/tmp/petsc-BM_48O/config.setCompilers /tmp/petsc-BM_48O/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-BM_48O/config.setCompilers/conftest /tmp/petsc-BM_48O/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: cc -c -o /tmp/petsc-BM_48O/config.setCompilers/conftest.o -I/tmp/petsc-BM_48O/config.setCompilers /tmp/petsc-BM_48O/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: cc -o /tmp/petsc-BM_48O/config.setCompilers/conftest /tmp/petsc-BM_48O/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET Testing executable /tmp/petsc-BM_48O/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-BM_48O/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-BM_48O/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: cc --version stdout: icc (ICC) 19.0.3.199 20190206 Copyright (C) 1985-2019 Intel Corporation. All rights reserved. ================================================================================ TEST checkCPreprocessor from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:674) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:674) Locate a functional C preprocessor Checking for program /opt/esslurm/bin/cc...not found Checking for program /usr/common/software/mvapich2/2.3.2/intel/19.0.3.199/cuda/10.2.89/bin/cc...not found Checking for program /usr/common/software/cuda/10.2.89/NsightSystems-2020.1.1.65/bin/cc...not found Checking for program /usr/common/software/cuda/10.2.89/bin/cc...not found Checking for program /global/common/cori_cle7/software/jdk/1.8.0_202/bin/cc...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/sbin/cc...not found Checking for program /opt/cray/alps/default/bin/cc...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.34__g36b56f4.ari/bin/cc...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/cc...found Defined make macro "CPP" to "cc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc -E -I/tmp/petsc-BM_48O/config.setCompilers /tmp/petsc-BM_48O/config.setCompilers/conftest.c Possible ERROR while running preprocessor: stdout: # 1 "/tmp/petsc-BM_48O/config.setCompilers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 43 "/usr/include/stdc-predef.h" # 51 "/usr/include/stdc-predef.h" # 1 "/tmp/petsc-BM_48O/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-BM_48O/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-BM_48O/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-BM_48O/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-BM_48O/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/bits/libc-header-start.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 142 "/usr/include/features.h" 3 # 162 "/usr/include/features.h" 3 # 173 "/usr/include/features.h" 3 # 187 "/usr/include/features.h" 3 # 211 "/usr/include/features.h" 3 # 222 "/usr/include/features.h" 3 # 262 "/usr/include/features.h" 3 # 278 "/usr/include/features.h" 3 # 291 "/usr/include/features.h" 3 # 317 "/usr/include/features.h" 3 # 349 "/usr/include/features.h" 3 # 388 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 72 "/usr/include/sys/cdefs.h" 3 # 82 "/usr/include/sys/cdefs.h" 3 # 116 "/usr/include/sys/cdefs.h" 3 # 133 "/usr/include/sys/cdefs.h" 3 # 156 "/usr/include/sys/cdefs.h" 3 # 184 "/usr/include/sys/cdefs.h" 3 # 217 "/usr/include/sys/cdefs.h" 3 # 244 "/usr/include/sys/cdefs.h" 3 # 262 "/usr/include/sys/cdefs.h" 3 # 285 "/usr/include/sys/cdefs.h" 3 # 308 "/usr/include/sys/cdefs.h" 3 # 320 "/usr/include/sys/cdefs.h" 3 # 350 "/usr/include/sys/cdefs.h" 3 # 392 "/usr/include/sys/cdefs.h" 3 # 400 "/usr/include/sys/cdefs.h" 3 # 410 "/usr/include/sys/cdefs.h" 3 # 418 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 10 "/usr/include/bits/wordsize.h" 3 # 420 "/usr/include/sys/cdefs.h" 2 3 # 1 "/usr/include/bits/long-double.h" 1 3 # 421 "/usr/include/sys/cdefs.h" 2 3 # 453 "/usr/include/sys/cdefs.h" 3 # 466 "/usr/include/sys/cdefs.h" 3 # 483 "/usr/include/sys/cdefs.h" 3 # 424 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 448 "/usr/include/features.h" 2 3 # 34 "/usr/include/bits/libc-header-start.h" 2 3 # 44 "/usr/include/bits/libc-header-start.h" 3 # 53 "/usr/include/bits/libc-header-start.h" 3 # 62 "/usr/include/bits/libc-header-start.h" 3 # 26 "/usr/include/stdlib.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 47 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 80 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 87 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 typedef struct { long long __clang_max_align_nonce1 __attribute__((__aligned__(__alignof__(long long)))); long double __clang_max_align_nonce2 __attribute__((__aligned__(__alignof__(long double)))); } max_align_t; # 103 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 32 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitflags.h" 1 3 # 35 "/usr/include/bits/waitflags.h" 3 # 40 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 41 "/usr/include/stdlib.h" 2 3 # 53 "/usr/include/stdlib.h" 3 # 1 "/usr/include/bits/floatn.h" 1 3 # 36 "/usr/include/bits/floatn.h" 3 # 55 "/usr/include/bits/floatn.h" 3 # 67 "/usr/include/bits/floatn.h" 3 # 93 "/usr/include/bits/floatn.h" 3 # 56 "/usr/include/stdlib.h" 2 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 137 "/usr/include/stdlib.h" 3 extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 187 "/usr/include/stdlib.h" 3 # 242 "/usr/include/stdlib.h" 3 extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) atoi (const char *__nptr) { return (int) strtol (__nptr, (char **) ((void*)0), 10); } extern __inline __attribute__ ((__gnu_inline__)) long int __attribute__ ((__nothrow__ , __leaf__)) atol (const char *__nptr) { return strtol (__nptr, (char **) ((void*)0), 10); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) long long int __attribute__ ((__nothrow__ , __leaf__)) atoll (const char *__nptr) { return strtoll (__nptr, (char **) ((void*)0), 10); } extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 10 "/usr/include/bits/wordsize.h" 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; typedef long int __intmax_t; typedef unsigned long int __uintmax_t; # 125 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 75 "/usr/include/bits/typesizes.h" 3 # 131 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; typedef int __sig_atomic_t; # 30 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/bits/types/clock_t.h" 1 3 typedef __clock_t clock_t; # 128 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types/clockid_t.h" 1 3 typedef __clockid_t clockid_t; # 130 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types/time_t.h" 1 3 typedef __time_t time_t; # 131 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types/timer_t.h" 1 3 typedef __timer_t timer_t; # 132 "/usr/include/sys/types.h" 2 3 # 143 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 1 3 # 50 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 69 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 80 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 87 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 103 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 146 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 1 "/usr/include/bits/stdint-intn.h" 1 3 typedef __int8_t int8_t; typedef __int16_t int16_t; typedef __int32_t int32_t; typedef __int64_t int64_t; # 157 "/usr/include/sys/types.h" 2 3 # 173 "/usr/include/sys/types.h" 3 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 10 "/usr/include/bits/wordsize.h" 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 1 "/usr/include/bits/uintn-identity.h" 1 3 static __inline __uint16_t __uint16_identity (__uint16_t __x) { return __x; } static __inline __uint32_t __uint32_identity (__uint32_t __x) { return __x; } static __inline __uint64_t __uint64_identity (__uint64_t __x) { return __x; } # 62 "/usr/include/endian.h" 2 3 # 96 "/usr/include/endian.h" 3 # 195 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 10 "/usr/include/bits/wordsize.h" 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/types/sigset_t.h" 1 3 # 1 "/usr/include/bits/types/__sigset_t.h" 1 3 typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 5 "/usr/include/bits/types/sigset_t.h" 2 3 typedef __sigset_t sigset_t; # 34 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/types/struct_timeval.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 38 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/types/struct_timespec.h" 1 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 40 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 198 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 # 1 "/usr/include/bits/sysmacros.h" 1 3 # 47 "/usr/include/bits/sysmacros.h" 3 # 59 "/usr/include/bits/sysmacros.h" 3 # 73 "/usr/include/bits/sysmacros.h" 3 # 42 "/usr/include/sys/sysmacros.h" 2 3 # 59 "/usr/include/sys/sysmacros.h" 3 extern unsigned int gnu_dev_major (__dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern unsigned int gnu_dev_minor (__dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern __dev_t gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (__dev_t __dev) { unsigned int __major; __major = ((__dev & (__dev_t) 0x00000000000fff00u) >> 8); __major |= ((__dev & (__dev_t) 0xfffff00000000000u) >> 32); return __major; } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (__dev_t __dev) { unsigned int __minor; __minor = ((__dev & (__dev_t) 0x00000000000000ffu) >> 0); __minor |= ((__dev & (__dev_t) 0x00000ffffff00000u) >> 12); return __minor; } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) __dev_t __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { __dev_t __dev; __dev = (((__dev_t) (__major & 0x00000fffu)) << 8); __dev |= (((__dev_t) (__major & 0xfffff000u)) << 32); __dev |= (((__dev_t) (__minor & 0x000000ffu)) << 0); __dev |= (((__dev_t) (__minor & 0xffffff00u)) << 12); return __dev; } # 99 "/usr/include/sys/sysmacros.h" 3 # 109 "/usr/include/sys/sysmacros.h" 3 # 206 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 244 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/thread-shared-types.h" 1 3 # 1 "/usr/include/bits/pthreadtypes-arch.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 10 "/usr/include/bits/wordsize.h" 3 # 22 "/usr/include/bits/pthreadtypes-arch.h" 2 3 # 49 "/usr/include/bits/pthreadtypes-arch.h" 3 struct __pthread_rwlock_arch_t { unsigned int __readers; unsigned int __writers; unsigned int __wrphase_futex; unsigned int __writers_futex; unsigned int __pad3; unsigned int __pad4; int __cur_writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; # 92 "/usr/include/bits/pthreadtypes-arch.h" 3 }; # 59 "/usr/include/bits/thread-shared-types.h" 2 3 typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 74 "/usr/include/bits/thread-shared-types.h" 3 # 98 "/usr/include/bits/thread-shared-types.h" 3 struct __pthread_mutex_s { int __lock ; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 143 "/usr/include/bits/thread-shared-types.h" 3 }; struct __pthread_cond_s { __extension__ union { __extension__ unsigned long long int __wseq; struct { unsigned int __low; unsigned int __high; } __wseq32; }; __extension__ union { __extension__ unsigned long long int __g1_start; struct { unsigned int __low; unsigned int __high; } __g1_start32; }; unsigned int __g_refs[2] ; unsigned int __g_size[2]; unsigned int __g1_orig_size; unsigned int __wrefs; unsigned int __g_signals[2]; }; # 24 "/usr/include/bits/pthreadtypes.h" 2 3 typedef unsigned long int pthread_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef union { struct __pthread_mutex_s __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { struct __pthread_cond_s __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { struct __pthread_rwlock_arch_t __data; char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 255 "/usr/include/sys/types.h" 2 3 # 280 "/usr/include/stdlib.h" 2 3 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); # 446 "/usr/include/stdlib.h" 3 extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 1 3 # 50 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 69 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 80 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 87 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 103 "/opt/intel/compilers_and_libraries_2019.3.199/linux/compiler/include/stddef.h" 3 # 25 "/usr/include/alloca.h" 2 3 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 452 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void *aligned_alloc (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__alloc_size__ (2))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int at_quick_exit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void quick_exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 524 "/usr/include/stdlib.h" 3 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 583 "/usr/include/stdlib.h" 3 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 606 "/usr/include/stdlib.h" 3 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 660 "/usr/include/stdlib.h" 3 extern int system (const char *__command) ; # 675 "/usr/include/stdlib.h" 3 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 699 "/usr/include/stdlib.h" 3 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; # 1 "/usr/include/bits/stdlib-bsearch.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) void * bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) { size_t __l, __u, __idx; const void *__p; int __comparison; __l = 0; __u = __nmemb; while (__l < __u) { __idx = (__l + __u) / 2; __p = (void *) (((const char *) __base) + (__idx * __size)); __comparison = (*__compar) (__key, __p); if (__comparison < 0) __u = __idx; else if (__comparison > 0) __l = __idx + 1; else return (void *) __p; } return ((void*)0); } # 708 "/usr/include/stdlib.h" 2 3 extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 875 "/usr/include/stdlib.h" 3 # 886 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/bits/stdlib-float.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) double __attribute__ ((__nothrow__ , __leaf__)) atof (const char *__nptr) { return strtod (__nptr, (char **) ((void*)0)); } # 902 "/usr/include/stdlib.h" 2 3 # 910 "/usr/include/stdlib.h" 3 # 4 "/tmp/petsc-BM_48O/config.setCompilers/conftest.c" 2 stderr: No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET : Preprocess stderr after filtering:No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used.Load a valid targeting module or set CRAY_CPU_TARGET: Checking for program /opt/esslurm/bin/cc...not found Checking for program /usr/common/software/mvapich2/2.3.2/intel/19.0.3.199/cuda/10.2.89/bin/cc...not found Checking for program /usr/common/software/cuda/10.2.89/NsightSystems-2020.1.1.65/bin/cc...not found Checking for program /usr/common/software/cuda/10.2.89/bin/cc...not found Checking for program /global/common/cori_cle7/software/jdk/1.8.0_202/bin/cc...not found Checking for program /opt/cray/rca/2.2.20-7.0.1.1_4.42__g8e3fb5b.ari/bin/cc...not found Checking for program /opt/cray/alps/6.6.57-7.0.1.1_5.10__g1b735148.ari/sbin/cc...not found Checking for program /opt/cray/alps/default/bin/cc...not found Checking for program /opt/cray/job/2.2.4-7.0.1.1_3.34__g36b56f4.ari/bin/cc...not found Checking for program /opt/cray/pe/craype/2.6.2/bin/cc...found Defined make macro "CPP" to "cc --use cpp32" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: cc --use cpp32 -I/tmp/petsc-BM_48O/config.setCompilers /tmp/petsc-BM_48O/config.setCompilers/conftest.c Possible ERROR while running preprocessor: exit code 1 stderr: No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET icc: command line warning #10006: ignoring unknown option '-fuse' icc: error #10236: File not found: 'cpp32' Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used. Load a valid targeting module or set CRAY_CPU_TARGET icc: command line warning #10006: ignoring unknown option '-fuse' icc: error #10236: File not found: 'cpp32' : Preprocess stderr after filtering:No supported cpu target is set, CRAY_CPU_TARGET=x86-64 will be used.Load a valid targeting module or set CRAY_CPU_TARGETicc: command line warning #10006: ignoring unknown option '-fuse'icc: error #10236: File not found: 'cpp32': ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Cannot find a C preprocessor ******************************************************************************* File "/global/u2/m/madams/petsc/config/configure.py", line 451, in petsc_configure framework.configure(out = sys.stdout) File "/global/u2/m/madams/petsc/config/BuildSystem/config/framework.py", line 1244, in configure self.processChildren() File "/global/u2/m/madams/petsc/config/BuildSystem/config/framework.py", line 1233, in processChildren self.serialEvaluation(self.childGraph) File "/global/u2/m/madams/petsc/config/BuildSystem/config/framework.py", line 1208, in serialEvaluation child.configure() File "/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py", line 1795, in configure self.executeTest(self.checkCPreprocessor) File "/global/u2/m/madams/petsc/config/BuildSystem/config/base.py", line 139, in executeTest ret = test(*args,**kargs) File "/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py", line 686, in checkCPreprocessor raise RuntimeError('Cannot find a C preprocessor') ================================================================================ Finishing configure run at Thu, 18 Jun 2020 16:47:03 -0700 ================================================================================