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<p class="MsoNormal">Actually, that is a question I should ask. When I use --with-64-bit-indices option to config petsc, do I need to use 64 integer option in mkl which means -lmkl_intel_ilp64, or I can use 32integer option for mkl which is -lmkl_intel_lp64?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<span style="font-size:10.0pt;color:black">Schlumberger-Private</span><o:p></o:p></p>
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<p class="MsoNormal"><b>From:</b> Barry Smith <bsmith@petsc.dev> <br>
<b>Sent:</b> Monday, June 15, 2020 12:29 PM<br>
<b>To:</b> Kun Jiao <KJiao@slb.com><br>
<b>Cc:</b> petsc-users@mcs.anl.gov<br>
<b>Subject:</b> [Ext] Re: [petsc-users] configure error<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> It is reporting <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> ld: cannot find -lmkl_intel_ilp64<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> Please send the output from <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">ls /mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl<o:p></o:p></p>
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<p class="MsoNormal">ls /mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib<o:p></o:p></p>
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<p class="MsoNormal">ls /mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Also you are mixing using the Intel MPI and OpenMPI, I am not sure this will work. <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">/opt/openmpi_4.0.3_intel2019.3/lib <o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Lucida Console"">-lmkl_blacs_intelmpi_lp64</span><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Jun 15, 2020, at 12:11 PM, Kun Jiao via petsc-users <<a href="mailto:petsc-users@mcs.anl.gov">petsc-users@mcs.anl.gov</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi,<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Lately I run into a configure error with intel compiler+openmpi+lapack,<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Error message as:<o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Lucida Console"">=============================================================================== TESTING:
checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:114) *******************************************************************************</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Lucida Console""> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Lucida Console"">-------------------------------------------------------------------------------</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Lucida Console"">You set a value for --with-blaslapack-lib=<lib>, but ['-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64',
'-Wl,', '--no-as-needed', '-lmkl_intel_ilp64', '-lmkl_intel_thread', '-lmkl_core', '-liomp5', '-lpthread', '-lm', '-ldl'] cannot be used</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Lucida Console"">*******************************************************************************</span><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Here is my configure parameters:<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Lucida Console"">./configure --configModules=PETSc.Configure --optionsModule=config.compilerOptions --configModules=PETSc.Configure --optionsModule=config.compilerOptions PETSC_ARCH=linux-gnu-intel
--with-precision=single --with-cc=icc --with-cxx=icc --with-fc=ifort --with-mpi-include=/opt/openmpi_4.0.3_intel2019.3/include --with-mpi-lib="-L/opt/openmpi_4.0.3_intel2019.3/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" --with-blaslapack-include="/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/include"
--with-blaslapack-lib="-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -Wl, --no-as-needed -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm
-ldl" --with-scalapack-lib="-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64" --with-scalapack-include=/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/include
--with-cmake=1 --prefix=/opt/petsc_3.10.4_intel2019.3 --known-endian=big --with-debugging=0 --COPTFLAGS=" -Ofast -xHost" --CXXOPTFLAGS=" -Ofast -xHost" --FOPTLAGS=" -Ofast -xHost" --with-x=0 --with-64-bit-indices</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Lucida Console""> </span><o:p></o:p></p>
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<p class="MsoNormal">And configure.log attached.<span class="apple-converted-space"> </span><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Any suggestion will be great?<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Regards,<o:p></o:p></p>
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<p class="MsoNormal">Kun<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:13.5pt;font-family:"Helvetica",sans-serif"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt">Schlumberger-Private</span><span style="font-size:13.5pt;font-family:"Helvetica",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><configure.log><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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