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<p class="MsoNormal">Thanks. Let me fix that. Try it again.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><b>From:</b> Matthew Knepley <knepley@gmail.com> <br>
<b>Sent:</b> Monday, June 15, 2020 12:25 PM<br>
<b>To:</b> Kun Jiao <KJiao@slb.com><br>
<b>Cc:</b> petsc-users@mcs.anl.gov<br>
<b>Subject:</b> [Ext] Re: [petsc-users] configure error<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Mon, Jun 15, 2020 at 12:13 PM Kun Jiao via petsc-users <<a href="mailto:petsc-users@mcs.anl.gov">petsc-users@mcs.anl.gov</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hi,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Lately I run into a configure error with intel compiler+openmpi+lapack,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Error message as:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Lucida Console"">===============================================================================
TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:114) *******************************************************************************</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Lucida Console""> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Lucida Console"">-------------------------------------------------------------------------------</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Lucida Console"">You set a value for --with-blaslapack-lib=<lib>, but ['-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64',
'-Wl,', '--no-as-needed', '-lmkl_intel_ilp64', '-lmkl_intel_thread', '-lmkl_core', '-liomp5', '-lpthread', '-lm', '-ldl'] cannot be used</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Lucida Console"">*******************************************************************************</span><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">You input looks wrong:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Executing: icc -o /tmp/petsc-srHpJ6/config.libraries/conftest -fPIC -wd1572 -Ofast -xHost /tmp/petsc-srHpJ6/config.libraries/conftest.o -L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64
-Wl, --no-as-needed -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl -lstdc++ -ldl -Wl,-rpath,/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mpi/intel64/libfabric/lib
-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mpi/intel64/libfabric/lib -Wl,-rpath,/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin
-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64_lin
-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64_lin -Wl,-rpath,/opt/2019.3/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin -L/opt/2019.3/compilers_and_libraries_2019.3.199/linux/compiler/lib/intel64_lin
-Wl,-rpath,/opt/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/opt/gcc-4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -Wl,-rpath,/opt/gcc-4.9.2/lib64 -L/opt/gcc-4.9.2/lib64 -Wl,-rpath,/opt/gcc-4.9.2/lib -L/opt/gcc-4.9.2/lib -lifport -lifcoremt_pic -limf
-lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl <br>
Possible ERROR while running linker: exit code 256<br>
stderr:<br>
icc: command line warning #10006: ignoring unknown option '-fno-as-needed'<br>
ld: cannot find -lmkl_intel_ilp64<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> Thanks,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> Matt<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Here is my configure parameters:<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Lucida Console"">./configure --configModules=PETSc.Configure --optionsModule=config.compilerOptions --configModules=PETSc.Configure --optionsModule=config.compilerOptions
PETSC_ARCH=linux-gnu-intel --with-precision=single --with-cc=icc --with-cxx=icc --with-fc=ifort --with-mpi-include=/opt/openmpi_4.0.3_intel2019.3/include --with-mpi-lib="-L/opt/openmpi_4.0.3_intel2019.3/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh
-lmpi" --with-blaslapack-include="/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/include" --with-blaslapack-lib="-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64
-Wl, --no-as-needed -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl" --with-scalapack-lib="-L/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64
-lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64" --with-scalapack-include=/mnt/disks/intel-2018-3-222-blade-runtime-env-2018-1-07-08-2018-132838/2019.3/intel/compilers_and_libraries_2019.3.199/linux/mkl/include --with-cmake=1 --prefix=/opt/petsc_3.10.4_intel2019.3
--known-endian=big --with-debugging=0 --COPTFLAGS=" -Ofast -xHost" --CXXOPTFLAGS=" -Ofast -xHost" --FOPTLAGS=" -Ofast -xHost" --with-x=0 --with-64-bit-indices</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:12.0pt;font-family:"Lucida Console""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">And configure.log attached.
<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Any suggestion will be great?<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Regards,<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Kun<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p align="center" style="margin:0in;margin-bottom:.0001pt;text-align:center"><span style="font-size:10.0pt;color:black">Schlumberger-Private</span><o:p></o:p></p>
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<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">-- <o:p></o:p></p>
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<p class="MsoNormal">What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><a href="https://urldefense.com/v3/__http:/www.cse.buffalo.edu/*knepley/__;fg!!Kjv0uj3L4nM6H-I!1ueS5T3NXrUZpRJ-y9xzwEEC4qD9A4qg2XevGBUA5zFFTcaDAleEh6w9f7Q$" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="msipfooter6d2e06ff" align="center" style="margin:0in;margin-bottom:.0001pt;text-align:center">
<span style="font-size:10.0pt;color:black">Schlumberger-Private</span><o:p></o:p></p>
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