/* * This example writes data to the HDF5 file by rows. * Number of processes is assumed to be 1 or multiples of 2 (up to 8) */ #include "hdf5.h" #include "stdlib.h" #define H5FILE_NAME "SDS_row.h5" #define DATASETNAME "IntArray" #define NX 8 /* dataset dimensions */ #define NY 5 #define RANK 2 int main (int argc, char **argv) { /* * HDF5 APIs definitions */ hid_t file_id, dset_id; /* file and dataset identifiers */ hid_t filespace, memspace; /* file and memory dataspace identifiers */ hsize_t dimsf[2]; /* dataset dimensions */ int *data; /* pointer to data buffer to write */ hsize_t count[2]; /* hyperslab selection parameters */ hsize_t offset[2]; hid_t plist_id; /* property list identifier */ int i; herr_t status; /* * MPI variables */ int mpi_size, mpi_rank; MPI_Comm comm = MPI_COMM_WORLD; MPI_Info info = MPI_INFO_NULL; /* * Initialize MPI */ MPI_Init(&argc, &argv); MPI_Comm_size(comm, &mpi_size); MPI_Comm_rank(comm, &mpi_rank); /* * Set up file access property list with parallel I/O access */ plist_id = H5Pcreate(H5P_FILE_ACCESS); H5Pset_fapl_mpio(plist_id, comm, info); /* * Create a new file collectively and release property list identifier. */ file_id = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, plist_id); H5Pclose(plist_id); /* * Create the dataspace for the dataset. */ dimsf[0] = NX; dimsf[1] = NY; filespace = H5Screate_simple(RANK, dimsf, NULL); /* * Create the dataset with default properties and close filespace. */ dset_id = H5Dcreate(file_id, DATASETNAME, H5T_NATIVE_INT, filespace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); H5Sclose(filespace); /* * Each process defines dataset in memory and writes it to the hyperslab * in the file. */ count[0] = dimsf[0]/mpi_size; count[1] = dimsf[1]; offset[0] = mpi_rank * count[0]; offset[1] = 0; memspace = H5Screate_simple(RANK, count, NULL); if (mpi_rank == 3) H5Sselect_none(memspace); /* * Select hyperslab in the file. */ filespace = H5Dget_space(dset_id); H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL, count, NULL); if (mpi_rank == 3) H5Sselect_none(filespace); /* * Initialize data buffer */ if (mpi_rank == 3) { printf("mpi_rank %d \n", mpi_rank); data = NULL; } else { data = (int *) malloc(sizeof(int)*count[0]*count[1]); for (i=0; i < count[0]*count[1]; i++) { data[i] = mpi_rank + 10; } } /*else*/ /* * Create property list for collective dataset write. */ plist_id = H5Pcreate(H5P_DATASET_XFER); H5Pset_dxpl_mpio(plist_id, H5FD_MPIO_COLLECTIVE); status = H5Dwrite(dset_id, H5T_NATIVE_INT, memspace, filespace, plist_id, data); if (mpi_rank != 3) free(data); /* * Close/release resources. */ H5Dclose(dset_id); H5Sclose(filespace); H5Sclose(memspace); H5Pclose(plist_id); H5Fclose(file_id); MPI_Finalize(); return 0; }