<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class=""><br class=""></div> Great, yes you should not need the DYLIB paths<div class=""><br class=""></div><div class=""> The branch is off master but what you can do is copy the config/BuildSystem/config/MatlabEngine.py to your PETSc 3.12.2 version and the configure </div><div class="">should work (it won't automatically run the test case but you can test it manually).</div><div class=""><br class=""></div><div class=""> Barry</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Jun 9, 2020, at 5:48 PM, Amneet Bhalla <<a href="mailto:mail2amneet@gmail.com" class="">mail2amneet@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class="">That worked!<div class=""><br class=""></div><div class=""><div style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-family: Monaco; color: rgb(242, 242, 242); background-color: rgba(0, 0, 0, 0.85);" class=""><span style="font-variant-ligatures:no-common-ligatures;color:rgb(46,174,187)" class="">amneetb</span><span style="font-variant-ligatures:no-common-ligatures" class="">@</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(47,180,29)" class="">Amneets-MBP:</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(159,160,28)" class="">~/Softwares/PETSc-Gitlab/petsc-matlab</span><span style="font-variant-ligatures:no-common-ligatures" class="">$ make PETSC_DIR=/Users/amneetb/Softwares/PETSc-Gitlab/petsc-matlab PETSC_ARCH=darwin-dbg check</span></div><div style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-family: Monaco; color: rgb(242, 242, 242); background-color: rgba(0, 0, 0, 0.85);" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Running check examples to verify correct installation</span></div><div style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-family: Monaco; color: rgb(242, 242, 242); background-color: rgba(0, 0, 0, 0.85);" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Using PETSC_DIR=/Users/amneetb/Softwares/PETSc-Gitlab/petsc-matlab and PETSC_ARCH=darwin-dbg</span></div><div style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-family: Monaco; color: rgb(242, 242, 242); background-color: rgba(0, 0, 0, 0.85);" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process</span></div><div style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-family: Monaco; color: rgb(242, 242, 242); background-color: rgba(0, 0, 0, 0.85);" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI processes</span></div><div style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-family: Monaco; color: rgb(242, 242, 242); background-color: rgba(0, 0, 0, 0.85);" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">C/C++ example src/snes/tutorials/ex19 run successfully with hypre</span></div><div style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-family: Monaco; color: rgb(242, 242, 242); background-color: rgba(0, 0, 0, 0.85);" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI process</span></div><div style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-family: Monaco; color: rgb(242, 242, 242); background-color: rgba(0, 0, 0, 0.85);" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">C/C++ example src/vec/vec/tutorials/ex31 run successfully with Matlab engine</span></div><div style="margin: 0px; font-stretch: normal; font-size: 15px; line-height: normal; font-family: Monaco; color: rgb(242, 242, 242); background-color: rgba(0, 0, 0, 0.85);" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Completed test examples</span></div></div></div></div><br class=""><div class="gmail_quote"><div class="gmail_attr">Should I remove DYLIB paths from .profile since these are now baked in the linker?</div><div class="gmail_attr"><br class=""></div><div class="gmail_attr">Also, Is this branch based-off of latest master? I'm currently using PETSc <span style="color:rgb(47,180,29);font-family:Monaco;font-size:15px;background-color:rgba(0,0,0,0.85)" class="">v3.12.2</span> for IBAMR. Anything close to this version should work for me.</div><div class="gmail_attr"><br class=""></div><div class="gmail_attr"><br class=""></div><div dir="ltr" class="gmail_attr">On Tue, Jun 9, 2020 at 3:17 PM Barry Smith <<a href="mailto:bsmith@petsc.dev" target="_blank" class="">bsmith@petsc.dev</a>> wrote:<br class=""></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex"><div style="word-wrap:break-word;line-break:after-white-space" class=""><div class=""><br class=""></div> I tried including the directories into my DYLD environmental variables and it didn't work; I am not sure why. This might be why <a href="https://stackoverflow.com/questions/35568122/why-isnt-dyld-library-path-being-propagated-here" target="_blank" class="">https://stackoverflow.com/questions/35568122/why-isnt-dyld-library-path-being-propagated-here</a><div class=""><br class=""></div><div class=""> Anyways try my branch and that should work.</div><div class=""><br class=""></div><div class=""> Barry</div><div class=""><br class=""><div class=""><br class=""></div><div class=""><br class=""><blockquote type="cite" class=""><div class="">On Jun 9, 2020, at 5:09 PM, Amneet Bhalla <<a href="mailto:mail2amneet@gmail.com" target="_blank" class="">mail2amneet@gmail.com</a>> wrote:</div><br class=""><div class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class=""><br class=""></div><div dir="ltr" class="">That's where I also found it. Thanks, Sanjay!<div class=""><br class=""></div><div class="">(This path is included in my .profile file</div><div class=""><br class=""></div><div class=""><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(44,238,235);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures;color:rgb(232,235,20)" class="">export</span><span style="font-variant-ligatures:no-common-ligatures" class=""> DYLD_FALLBACK_LIBRARY_PATH</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(232,235,20)" class="">=</span><span style="font-variant-ligatures:no-common-ligatures" class="">/Applications/MATLAB_R2019b.app/bin/maci64:/Applications/MATLAB_R2019b.app/sys/os/maci64:</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(94,220,255)" class="">$DYLD_FALLBACK_LIBRARY_PATH</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(44,238,235);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures;color:rgb(232,235,20)" class="">export</span><span style="font-variant-ligatures:no-common-ligatures" class=""> DYLD_LIBRARY_PATH</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(232,235,20)" class="">=</span><span style="font-variant-ligatures:no-common-ligatures" class="">/Applications/MATLAB_R2019b.app/bin/maci64:/Applications/MATLAB_R2019b.app/sys/os/maci64:</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(94,220,255)" class="">$DYLD_LIBRARY_PATH</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(44,238,235);background-color:rgba(0,0,0,0.85)" class=""><br class=""></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(44,238,235);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures;color:rgb(94,220,255)" class=""><br class=""></span></div></div></div></div><br class=""><div class="gmail_quote"><div dir="ltr" class="gmail_attr">)</div><div dir="ltr" class="gmail_attr"><br class=""></div><div class="gmail_attr">Do I need to tell PETSc about this path as well? Something like:</div><div class="gmail_attr"><br class=""></div>--with-matlab-engine-lib=/Applications/MATLAB_R2019b.app/bin/maci64/libeng.dylib</div><div class="gmail_quote"><br class=""></div><div class="gmail_quote"><br class=""><div dir="ltr" class="gmail_attr">On Tue, Jun 9, 2020 at 2:56 PM Sanjay Govindjee <<a href="mailto:s_g@berkeley.edu" target="_blank" class="">s_g@berkeley.edu</a>> wrote:<br class=""></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">
<div class="">
Try looking in:<br class="">
<br class="">
<pre class="">$(MLROOT)/bin/maci64
where MLROOT = /Applications/MATLAB_R2019a.app or the like
</pre>
On 6/9/20 2:51 PM, Junchao Zhang wrote:<br class="">
<blockquote type="cite" class="">
<div dir="ltr" class="">Find recursively where is libeng.dylib under
/Applications/MATLAB_R2019b.app/extern/engines/
<div class=""><br clear="all" class="">
<div class="">
<div dir="ltr" class="">
<div dir="ltr" class="">--Junchao Zhang</div>
</div>
</div>
<br class="">
</div>
</div>
<br class="">
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Tue, Jun 9, 2020 at 4:27 PM
Amneet Bhalla <<a href="mailto:mail2amneet@gmail.com" target="_blank" class="">mail2amneet@gmail.com</a>> wrote:<br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">
<div dir="ltr" class="">
<div dir="ltr" class="">Forgot to mention that configure found the
following about MATLAB
<div class=""><br class="">
</div>
<div class=""><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Matlab:</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">
Includes:
-I/Applications/MATLAB_R2019b.app/extern/include</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">
/Applications/MATLAB_R2019b.app</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">MatlabEngine:</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">
Library:
-L/Applications/MATLAB_R2019b.app/bin/maci64
-L/Applications/MATLAB_R2019b.app/extern/lib/maci64
-leng -lmex -lmx -lmat -lut -licudata -licui18n
-licuuc</span></div>
</div>
</div>
</div>
<br class="">
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Tue, Jun 9, 2020 at
2:20 PM Amneet Bhalla <<a href="mailto:mail2amneet@gmail.com" target="_blank" class="">mail2amneet@gmail.com</a>>
wrote:<br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">
<div dir="ltr" class="">
<div dir="ltr" class="">
<div dir="ltr" class="">
<div dir="ltr" class="">
<div dir="ltr" class="">
<div dir="ltr" class="">Do these additional configure
flags for MATLAB look OK?
<div class=""><br class="">
</div>
<div class=""><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">--with-matlab=1
--with-matlab-dir=/Applications/MATLAB_R2019b.app
--with-matlab-engine=1
--with-matlab-engine-dir=/Applications/MATLAB_R2019b.app/extern/engines/</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class="">With
this configuration make compiled files
like:</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> CC
darwin-dbg/obj/sys/classes/viewer/impls/matlab/vmatlab.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> CC
darwin-dbg/obj/sys/classes/viewer/impls/matlab/ftn-custom/zvmatlabf.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> CC
darwin-dbg/obj/sys/classes/matlabengine/matlab.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> CC
darwin-dbg/obj/sys/classes/matlabengine/ftn-auto/matlabf.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> CC
darwin-dbg/obj/sys/classes/matlabengine/ftn-custom/zmatlabf.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> CC
darwin-dbg/obj/vec/pf/impls/matlab/cmatlab.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> CC
darwin-dbg/obj/vec/vec/utils/matlab/gcreatev.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""><br class="">
</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">make[2]: Leaving
directory
`/Users/amneetb/Softwares/PETSc-Gitlab/PETSc'</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">BEGINNING TO COMPILE
MATLAB INTERFACE</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Building with 'Xcode
with Clang'.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ld: warning: cannot
export hidden symbol
_mexfilerequiredapiversion from
c_mexapi_version.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ld: warning: cannot
export hidden symbol
_mexfilerequiredapiversion from
c_mexapi_version.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">MEX completed
successfully.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Building with 'Xcode
with Clang'.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ld: warning: cannot
export hidden symbol
_mexfilerequiredapiversion from
c_mexapi_version.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ld: warning: cannot
export hidden symbol
_mexfilerequiredapiversion from
c_mexapi_version.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">MEX completed
successfully.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Building with 'Xcode
with Clang'.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ld: warning: cannot
export hidden symbol
_mexfilerequiredapiversion from
c_mexapi_version.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">MEX completed
successfully.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Building with 'Xcode
with Clang'.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ld: warning: cannot
export hidden symbol
_mexfilerequiredapiversion from
c_mexapi_version.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">ld: warning: cannot
export hidden symbol
_mexfilerequiredapiversion from
c_mexapi_version.o</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><p style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">
</span></p><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">MEX completed
successfully.</span></div>
<div class=""><span style="font-variant-ligatures:no-common-ligatures" class=""><br class="">
</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class="">However,
make check gives error</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures;color:rgb(46,174,187)" class="">amneetb</span><span style="font-variant-ligatures:no-common-ligatures" class="">@</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(47,180,29)" class="">Amneets-MBP:</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(159,160,28)" class="">~/Softwares/PETSc-Gitlab/PETSc</span><span style="font-variant-ligatures:no-common-ligatures" class="">$ make
PETSC_DIR=/Users/amneetb/Softwares/PETSc-Gitlab/PETSc
PETSC_ARCH=darwin-dbg check</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Running test examples
to verify correct installation</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Using
PETSC_DIR=/Users/amneetb/Softwares/PETSc-Gitlab/PETSc
and PETSC_ARCH=darwin-dbg</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Possible error
running C/C++
src/snes/examples/tutorials/ex19 with 1
MPI process</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">See <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html" target="_blank" class="">http://www.mcs.anl.gov/petsc/documentation/faq.html</a></span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">dyld: Library not
loaded: @rpath/libeng.dylib</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> Referenced from:
/Users/amneetb/Softwares/PETSc-Gitlab/PETSc/src/snes/examples/tutorials/./ex19</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> Reason: image not
found</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">===================================================================================</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= BAD TERMINATION
OF ONE OF YOUR APPLICATION PROCESSES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= PID 14057 RUNNING
AT Amneets-MBP</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= EXIT CODE: 6</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= CLEANING UP
REMAINING PROCESSES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= YOU CAN IGNORE
THE BELOW CLEANUP MESSAGES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">===================================================================================</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">YOUR APPLICATION
TERMINATED WITH THE EXIT STRING: Abort
trap: 6 (signal 6)</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">This typically refers
to a problem with your application.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Please see the FAQ
page for debugging suggestions</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Possible error
running C/C++
src/snes/examples/tutorials/ex19 with 2
MPI processes</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">See <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html" target="_blank" class="">http://www.mcs.anl.gov/petsc/documentation/faq.html</a></span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">dyld: Library not
loaded: @rpath/libeng.dylib</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> Referenced from:
/Users/amneetb/Softwares/PETSc-Gitlab/PETSc/src/snes/examples/tutorials/./ex19</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> Reason: image not
found</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">dyld: Library not
loaded: @rpath/libeng.dylib</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> Referenced from:
/Users/amneetb/Softwares/PETSc-Gitlab/PETSc/src/snes/examples/tutorials/./ex19</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> Reason: image not
found</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">===================================================================================</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= BAD TERMINATION
OF ONE OF YOUR APPLICATION PROCESSES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= PID 14062 RUNNING
AT Amneets-MBP</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= EXIT CODE: 6</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= CLEANING UP
REMAINING PROCESSES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= YOU CAN IGNORE
THE BELOW CLEANUP MESSAGES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">===================================================================================</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">YOUR APPLICATION
TERMINATED WITH THE EXIT STRING: Abort
trap: 6 (signal 6)</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">This typically refers
to a problem with your application.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Please see the FAQ
page for debugging suggestions</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">1,5c1,17</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">< lid velocity =
0.0016, prandtl # = 1., grashof # = 1.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">< 0 SNES
Function norm 0.0406612 </span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">< 1 SNES
Function norm 4.12227e-06 </span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">< 2 SNES
Function norm 6.098e-11 </span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">< Number of SNES
iterations = 2</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">---</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> dyld: Library
not loaded: @rpath/libeng.dylib</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> Referenced
from:
/Users/amneetb/Softwares/PETSc-Gitlab/PETSc/src/snes/examples/tutorials/./ex19</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> Reason: image
not found</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> dyld: Library
not loaded: @rpath/libeng.dylib</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> Referenced
from:
/Users/amneetb/Softwares/PETSc-Gitlab/PETSc/src/snes/examples/tutorials/./ex19</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> Reason: image
not found</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> </span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">>
===================================================================================</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> = BAD
TERMINATION OF ONE OF YOUR APPLICATION
PROCESSES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> = PID 14072
RUNNING AT Amneets-MBP</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> = EXIT CODE: 6</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> = CLEANING UP
REMAINING PROCESSES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> = YOU CAN
IGNORE THE BELOW CLEANUP MESSAGES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">>
===================================================================================</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> YOUR APPLICATION
TERMINATED WITH THE EXIT STRING: Abort
trap: 6 (signal 6)</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> This typically
refers to a problem with your
application.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">> Please see the
FAQ page for debugging suggestions</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">/Users/amneetb/Softwares/PETSc-Gitlab/PETSc/src/snes/examples/tutorials</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Possible problem with
ex19 running with hypre, diffs above</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">=========================================</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Possible error
running Fortran example
src/snes/examples/tutorials/ex5f with 1
MPI process</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">See <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html" target="_blank" class="">http://www.mcs.anl.gov/petsc/documentation/faq.html</a></span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">dyld: Library not
loaded: @rpath/libeng.dylib</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> Referenced from:
/Users/amneetb/Softwares/PETSc-Gitlab/PETSc/src/snes/examples/tutorials/./ex5f</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""> Reason: image not
found</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">===================================================================================</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= BAD TERMINATION
OF ONE OF YOUR APPLICATION PROCESSES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= PID 14211 RUNNING
AT Amneets-MBP</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= EXIT CODE: 6</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= CLEANING UP
REMAINING PROCESSES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">= YOU CAN IGNORE
THE BELOW CLEANUP MESSAGES</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">===================================================================================</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">YOUR APPLICATION
TERMINATED WITH THE EXIT STRING: Abort
trap: 6 (signal 6)</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">This typically refers
to a problem with your application.</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Please see the FAQ
page for debugging suggestions</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Completed test
examples</span></div>
<div class=""><span style="font-variant-ligatures:no-common-ligatures" class=""><br class="">
</span></div>
<div class=""><span style="font-variant-ligatures:no-common-ligatures" class=""><br class="">
</span></div>
<div class=""><span style="font-variant-ligatures:no-common-ligatures" class="">I
have added the following paths in my
.profile and sourced it before make all
and make check </span></div>
<div class=""><span style="font-variant-ligatures:no-common-ligatures" class=""><br class="">
</span></div>
<div class=""><span style="font-variant-ligatures:no-common-ligatures" class=""><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(44,238,235);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures;color:rgb(232,235,20)" class="">export</span><span style="font-variant-ligatures:no-common-ligatures" class="">
DYLD_FALLBACK_LIBRARY_PATH</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(232,235,20)" class="">=</span><span style="font-variant-ligatures:no-common-ligatures" class="">/Applications/MATLAB_R2019b.app/bin/maci64:/Applications/MATLAB_R2019b.app/sys/os/maci64:</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(94,220,255)" class="">$DYLD_FALLBACK_LIBRARY_PATH</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85);min-height:20px" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(44,238,235);background-color:rgba(0,0,0,0.85)" class=""><span style="font-variant-ligatures:no-common-ligatures;color:rgb(232,235,20)" class="">export</span><span style="font-variant-ligatures:no-common-ligatures" class=""> DYLD_LIBRARY_PATH</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(232,235,20)" class="">=</span><span style="font-variant-ligatures:no-common-ligatures" class="">/Applications/MATLAB_R2019b.app/bin/maci64:/Applications/MATLAB_R2019b.app/sys/os/maci64:</span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(94,220,255)" class="">$DYLD_LIBRARY_PATH</span></div>
</span></div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><br class="">
</div><div style="margin:0px;font-stretch:normal;font-size:15px;line-height:normal;font-family:Monaco;color:rgb(242,242,242);background-color:rgba(0,0,0,0.85)" class=""><br class="">
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<br class="">
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Mon, Jun 8, 2020 at
6:39 PM Barry Smith <<a href="mailto:bsmith@petsc.dev" target="_blank" class="">bsmith@petsc.dev</a>>
wrote:<br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">
<div class="">
<div class=""><br class="">
</div>
Looks like the tool to list the examples in the
manual pages is broken since it didn't find these
other examples, I'll take a look at it.
<div class=""><br class="">
</div>
<div class=""> There is also a discussion in the users
manual<br class="">
<div class=""><br class="">
</div>
<div class="">
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">$ git grep
MatlabEngine | grep ex</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/docs/tex/manual/part2.tex:PetscMatlabEngineCreate(MPI_Comm
comm,char *machine,PetscMatlabEngine *e);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/docs/tex/manual/part2.tex:PetscMatlabEnginePut(PetscMatlabEngine
e,PetscObject obj);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/docs/tex/manual/part2.tex:PetscMatlabEngineGet(PetscMatlabEngine
e,PetscObject obj);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/docs/tex/manual/part2.tex:PetscMatlabEnginePutArray(PetscMatlabEngine
e,int m,int n,PetscScalar *array,char
*name);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/docs/tex/manual/part2.tex:PetscMatlabEngineGetArray(PetscMatlabEngine
e,int m,int n,PetscScalar *array,char
*name);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/docs/tex/manual/part2.tex:PetscMatlabEngineEvaluate(PetscMatlabEngine,"format",...);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/docs/tex/manual/part2.tex:PetscMatlabEngineEvaluate(PetscMatlabEngine,"x
= \%g *y + z;",avalue);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/docs/tex/manual/part2.tex:PetscMatlabEngineGetOutput(PetscMatlabEngine,char
**);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/docs/tex/manual/part2.tex:PetscMatlabEnginedPrintOutput(PetscMatlabEngine,FILE*).</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/snes/tutorials/ex5.c:
ierr =
PetscMatlabEnginePut(PETSC_MATLAB_ENGINE_(comm),(PetscObject)localX);CHKERRQ(ierr);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/snes/tutorials/ex5.c:
ierr =
PetscMatlabEngineEvaluate(PETSC_MATLAB_ENGINE_(comm),"localF=ex5m(localX,%18.16e,%18.16e,%18.16e)",hx,hy,lambda);CHKERRQ(ierr);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/snes/tutorials/ex5.c:
ierr =
PetscMatlabEngineGet(PETSC_MATLAB_ENGINE_(comm),(PetscObject)localF);CHKERRQ(ierr);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/sys/tests/ex16.c:static
char help[] = "Demonstrates
PetscMatlabEngineXXX()\n";</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/sys/tests/ex16.c:
ierr =
PetscMatlabEngineGetOutput(PETSC_MATLAB_ENGINE_(PETSC_COMM_WORLD),&output);CHKERRQ(ierr);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/sys/tests/ex16.c:
ierr =
PetscMatlabEngineEvaluate(PETSC_MATLAB_ENGINE_(PETSC_COMM_WORLD),"MPI_Comm_rank");CHKERRQ(ierr);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/sys/tests/ex16.c:
ierr =
PetscMatlabEngineEvaluate(PETSC_MATLAB_ENGINE_(PETSC_COMM_WORLD),user);CHKERRQ(ierr);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/vec/vec/tests/ex31.c:static
const char help[] = "Demonstrates
PetscMatlabEngineXXX()\n";</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/vec/vec/tests/ex31.c:
ierr =
PetscMatlabEngineGetOutput(PETSC_MATLAB_ENGINE_WORLD,&output);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/vec/vec/tests/ex31.c:
ierr =
PetscMatlabEngineEvaluate(PETSC_MATLAB_ENGINE_WORLD,"MPI_Comm_rank");</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/vec/vec/tests/ex31.c:
ierr =
PetscMatlabEnginePut(PETSC_MATLAB_ENGINE_WORLD,(PetscObject)x);CHKERRQ(ierr);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/vec/vec/tests/ex31.c:
ierr =
PetscMatlabEngineEvaluate(PETSC_MATLAB_ENGINE_WORLD,"x
= x + MPI_Comm_rank;\n");</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/vec/vec/tests/ex31.c:
ierr =
PetscMatlabEngineGet(PETSC_MATLAB_ENGINE_WORLD,(PetscObject)x);CHKERRQ(ierr);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">src/vec/vec/tests/ex31.c:
ierr =
PetscMatlabEngineEvaluate(PETSC_MATLAB_ENGINE_WORLD,"whos\n");CHKERRQ(ierr);</span></div>
<div style="margin:0px;font-stretch:normal;font-size:14px;line-height:normal;font-family:Menlo" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""><br class="">
</span></div>
<blockquote type="cite" class="">
<div class="">On Jun 8, 2020, at 8:26 PM, Amneet Bhalla
<<a href="mailto:mail2amneet@gmail.com" target="_blank" class="">mail2amneet@gmail.com</a>>
wrote:</div>
<br class="">
<div class="">
<div dir="ltr" class="">
<div dir="ltr" class="">Great!
<div class=""><br class="">
</div>
<div class="">Clicking on some of the functions
pointed me to this example</div>
<div class=""><a href="https://www.mcs.anl.gov/petsc/petsc-3.13/src/snes/tutorials/ex5.c.html" target="_blank" class="">https://www.mcs.anl.gov/petsc/petsc-3.13/src/snes/tutorials/ex5.c.html</a><br class="">
</div>
<div class=""><br class="">
</div>
<div class="">Are there more examples, which are
perhaps simpler than the above, which
I can refer to? </div>
</div>
</div>
<br class="">
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Mon,
Jun 8, 2020 at 5:51 PM Barry Smith <<a href="mailto:bsmith@petsc.dev" target="_blank" class="">bsmith@petsc.dev</a>>
wrote:<br class="">
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">
<div class="">
<div class=""><br class="">
</div>
<span style="font-size:13px" class=""> You
should use the PetscMatlabEngine </span><a href="https://www.mcs.anl.gov/petsc/petsc-3.13/docs/manualpages/Sys/PetscMatlabEngine.html" style="font-size:13px" target="_blank" class="">https://www.mcs.anl.gov/petsc/petsc-3.13/docs/manualpages/Sys/PetscMatlabEngine.html</a><br style="font-size:13px" class="">
<br style="font-size:13px" class="">
<span style="font-size:13px" class=""> Barry</span>
<div class=""><font size="2" class=""><br class="">
</font>
<div class=""><br class="">
<blockquote type="cite" class="">
<div class="">On Jun 8, 2020, at 7:09 PM,
Amneet Bhalla <<a href="mailto:mail2amneet@gmail.com" target="_blank" class="">mail2amneet@gmail.com</a>>
wrote:</div>
<br class="">
<div class="">
<div dir="ltr" class="">Hi Folks,
<div class=""><br class="">
</div>
<div class="">My parallel application
written in C++ (which also
uses PETSc library for
linear solvers) requires
calling control and
optimization toolbox of
MATLAB at every time step
to get a small number of
double values. Likewise
the MATLAB function will
need to know some values
from the parallel C++
application to return
those doubles. I'm
wondering if there is a
recommended way of calling
MATLAB from parallel
C/C++/Fortran codes, and
if PETSc has some
interface that could be
leveraged for this
exchange. <br clear="all" class="">
<div class=""><br class="">
</div>
<div class="">Thanks,</div>
-- <br class="">
<div dir="ltr" class="">
<div dir="ltr" class="">
<div class="">--Amneet <br class="">
<br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
</div>
</div>
</div>
</div>
</div>
</blockquote>
</div>
<br class="">
</div>
</div>
</blockquote>
</div>
<br clear="all" class="">
<div class=""><br class="">
</div>
-- <br class="">
<div dir="ltr" class="">
<div dir="ltr" class="">
<div class="">--Amneet <br class="">
<br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
</div>
</div>
</div>
</blockquote>
</div>
<br class="">
</div>
</div>
</blockquote>
</div>
<br clear="all" class="">
<div class=""><br class="">
</div>
-- <br class="">
<div dir="ltr" class="">
<div dir="ltr" class="">
<div class="">--Amneet <br class="">
<br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
</div>
</div>
</blockquote>
</div>
<br clear="all" class="">
<div class=""><br class="">
</div>
-- <br class="">
<div dir="ltr" class="">
<div dir="ltr" class="">
<div class="">--Amneet <br class="">
<br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
</div>
</div>
</blockquote>
</div>
</blockquote>
<br class="">
</div>
</blockquote></div><br clear="all" class=""><div class=""><br class=""></div>-- <br class=""><div dir="ltr" class=""><div dir="ltr" class=""><div class="">--Amneet <br class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div></div></div></div></div></div></div></div>
</div></blockquote></div><br class=""></div></div></blockquote></div><br clear="all" class=""><div class=""><br class=""></div>-- <br class=""><div dir="ltr" class=""><div dir="ltr" class=""><div class="">--Amneet <br class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div></div></div></div></div>
</div></blockquote></div><br class=""></div></body></html>