<div dir="ltr">Ahhh, thanks,<div>OK, now I am able to reproduce the error in the test. I can work on that,</div><div>Thanks again,</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sun, Apr 19, 2020 at 11:45 AM Satish Balay <<a href="mailto:balay@mcs.anl.gov">balay@mcs.anl.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">> *[0]PETSC ERROR: Could not locate solver package superlu for factorization<br>
<br>
Here you are requesting 'superlu' - instead of 'superlu_dist' - hence this error.<br>
<br>
Satish<br>
<br>
On Sun, 19 Apr 2020, Mark Adams wrote:<br>
<br>
> ><br>
> ><br>
> ><br>
> > > > --download-superlu --download-superlu_dist<br>
> ><br>
> > You are installing with both superlu and superlu_dist. To verify - remove<br>
> > superlu - and keep only superlu_dist<br>
> ><br>
> <br>
> I tried this earlier. Here is the error message:<br>
> <br>
> 0 SNES Function norm 1.511918966798e-02<br>
> [0]PETSC ERROR: --------------------- Error Message<br>
> --------------------------------------------------------------<br>
> [0]PETSC ERROR: See<br>
> <a href="https://www.mcs.anl.gov/petsc/documentation/linearsolvertable.html" rel="noreferrer" target="_blank">https://www.mcs.anl.gov/petsc/documentation/linearsolvertable.html</a> for<br>
> possible LU and Cholesky solvers<br>
> <br>
> *[0]PETSC ERROR: Could not locate solver package superlu for factorization<br>
> type LU and matrix type seqaij. Perhaps you must ./configure with<br>
> --download-superlu*[0]PETSC ERROR: See<br>
> <a href="https://www.mcs.anl.gov/petsc/documentation/faq.html" rel="noreferrer" target="_blank">https://www.mcs.anl.gov/petsc/documentation/faq.html</a> for trouble shooting.<br>
> [0]PETSC ERROR: Petsc Development GIT revision: v3.13-163-g4c71feb GIT<br>
> Date: 2020-04-18 15:35:50 -0400<br>
> [0]PETSC ERROR: ./ex112d on a arch-summit-opt-gnu-cuda-omp-2db named h23n05<br>
> by adams Sun Apr 19 11:39:05 2020<br>
> [0]PETSC ERROR: Configure options --with-fc=0 --COPTFLAGS="-g -O2 -fPIC<br>
> -fopenmp -DFP_DIM=2" --CXXOPTFLAGS="-g -O2 -fPIC -fopenmp" --FOPTFLAGS="-g<br>
> -O2 -fPIC -fopenmp" --CUDAOPTFLAGS="-O2 -g" --with-ssl=0 --with-batch=0<br>
> --with-cxx=mpicxx --with-mpiexec="jsrun -g1" --with-cuda=1<br>
> --with-cudac=nvcc --download-p4est=1 --download-zlib --download-hdf5=1<br>
> --download-metis --download-superlu_dist --with-make-np=16<br>
> --download-parmetis --download-triangle<br>
> --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64<br>
> -lblas -llapack" --with-cc=mpicc --with-shared-libraries=1 --with-x=0<br>
> --with-64-bit-indices=0 --with-debugging=0<br>
> PETSC_ARCH=arch-summit-opt-gnu-cuda-omp-2db --with-openmp=1<br>
> --with-threadsaftey=1 --with-log=1<br>
> [0]PETSC ERROR: #1 MatGetFactor() line 4490 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #2 PCSetUp_LU() line 88 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/ksp/pc/impls/factor/lu/lu.c<br>
> [0]PETSC ERROR: #3 PCSetUp() line 894 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/ksp/pc/interface/precon.c<br>
> [0]PETSC ERROR: #4 KSPSetUp() line 376 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/ksp/ksp/interface/itfunc.c<br>
> [0]PETSC ERROR: #5 KSPSolve_Private() line 633 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/ksp/ksp/interface/itfunc.c<br>
> [0]PETSC ERROR: #6 KSPSolve() line 853 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/ksp/ksp/interface/itfunc.c<br>
> [0]PETSC ERROR: #7 SNESSolve_NEWTONLS() line 225 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/snes/impls/ls/ls.c<br>
> [0]PETSC ERROR: #8 SNESSolve() line 4520 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/snes/interface/snes.c<br>
> [0]PETSC ERROR: #9 TSStep_ARKIMEX() line 811 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/ts/impls/arkimex/arkimex.c<br>
> [0]PETSC ERROR: #10 TSStep() line 3721 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/ts/interface/ts.c<br>
> [0]PETSC ERROR: #11 TSSolve() line 4127 in<br>
> /autofs/nccs-svm1_home1/adams/petsc/src/ts/interface/ts.c<br>
> [0]PETSC ERROR: #12 main() line 955 in ex11.c<br>
> <br>
> <br>
> ><br>
> > Satish<br>
> ><br>
> ><br>
> > ><br>
> > ><br>
> > > ><br>
> > > > SuperLU:<br>
> > > > Version: 5.2.1<br>
> > > > Includes:<br>
> > -I/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/include<br>
> > > > Library:<br>
> > -Wl,-rpath,/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib<br>
> > > > -L/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib -lsuperlu<br>
> > > ><br>
> > > > which is serial superlu, not superlu_dist. These are 2 different<br>
> > codes.<br>
> > > ><br>
> > > > Sherry<br>
> > > ><br>
> > > > On Sat, Apr 18, 2020 at 4:54 PM Mark Adams <<a href="mailto:mfadams@lbl.gov" target="_blank">mfadams@lbl.gov</a>> wrote:<br>
> > > ><br>
> > > >><br>
> > > >><br>
> > > >> On Sat, Apr 18, 2020 at 3:05 PM Xiaoye S. Li <<a href="mailto:xsli@lbl.gov" target="_blank">xsli@lbl.gov</a>> wrote:<br>
> > > >><br>
> > > >>> Mark,<br>
> > > >>><br>
> > > >>> It seems you are talking about serial superlu? There is no GPU<br>
> > support<br>
> > > >>> in it. Only superlu_dist has GPU.<br>
> > > >>><br>
> > > >><br>
> > > >> I am using superlu_dist on one processor. Should that work?<br>
> > > >><br>
> > > >><br>
> > > >>><br>
> > > >>> But I don't know why there is a crash.<br>
> > > >>><br>
> > > >>> Sherry<br>
> > > >>><br>
> > > >>> On Sat, Apr 18, 2020 at 11:44 AM Mark Adams <<a href="mailto:mfadams@lbl.gov" target="_blank">mfadams@lbl.gov</a>> wrote:<br>
> > > >>><br>
> > > >>>> Sherry, I did rebase with master this week:<br>
> > > >>>><br>
> > > >>>> SuperLU:<br>
> > > >>>> Version: 5.2.1<br>
> > > >>>> Includes:<br>
> > -I/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/include<br>
> > > >>>> Library:<br>
> > > >>>> -Wl,-rpath,/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib<br>
> > > >>>> -L/ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib -lsuperlu<br>
> > > >>>><br>
> > > >>>> I see the same thing with a debug build.<br>
> > > >>>><br>
> > > >>>> If anyone is interested in looking at this, I was also able to see<br>
> > that<br>
> > > >>>> plex/ex10 in my branch, which is a very simple test , also does not<br>
> > crash<br>
> > > >>>> and also does not seem to use GPUs in SuperLU.<br>
> > > >>>><br>
> > > >>>><br>
> > > >>>> On Sat, Apr 18, 2020 at 11:46 AM Xiaoye S. Li <<a href="mailto:xsli@lbl.gov" target="_blank">xsli@lbl.gov</a>> wrote:<br>
> > > >>>><br>
> > > >>>>> When you install "-download-superlu_dist", that is from 'master'<br>
> > > >>>>> branch?<br>
> > > >>>>><br>
> > > >>>>> In the error trace, I recognized this:<br>
> > > >>>>><br>
> > > >>>>> > [h50n09:102287] [ 9] /ccs/home/adams/petsc/arch-<br>
> > > >>>>> summit-opt-gnu-cuda-omp/lib/libsuperlu_dist.so.6(dDestroy_<br>
> > > >>>>> LU+0xc4)[0x20000195aff4]<br>
> > > >>>>><br>
> > > >>>>> This is to free the L and U data structures at the end of the<br>
> > program.<br>
> > > >>>>><br>
> > > >>>>> Sherry<br>
> > > >>>>><br>
> > > >>>>> On Sat, Apr 18, 2020 at 7:24 AM Mark Adams <<a href="mailto:mfadams@lbl.gov" target="_blank">mfadams@lbl.gov</a>><br>
> > wrote:<br>
> > > >>>>><br>
> > > >>>>>> Back to SuperLU + GPUs (adding Sherry)<br>
> > > >>>>>><br>
> > > >>>>>> I get this error (appended) running 'check', as I said before. It<br>
> > > >>>>>> looks like ex19 is *failing* with CUDA but it is not clear it has<br>
> > > >>>>>> anything to do with SuperLU. I can not find these diagnostics<br>
> > that got<br>
> > > >>>>>> printed after the error in PETSc or SuperLU.<br>
> > > >>>>>><br>
> > > >>>>>> So this is a problem, but moving on to my code (plex/ex11 in<br>
> > > >>>>>> mark/feature-xgc-interface-rebase-v2, configure script appended).<br>
> > It runs.<br>
> > > >>>>>> I use superlu and GPUs, but they do not seem to be used in<br>
> > SuperLU:<br>
> > > >>>>>><br>
> > > >>>>>><br>
> > > >>>>>><br>
> > ------------------------------------------------------------------------------------------------------------------------<br>
> > > >>>>>> Event Count Time (sec) Flop<br>
> > > >>>>>> --- Global --- --- Stage ---- Total GPU -<br>
> > CpuToGpu - -<br>
> > > >>>>>> GpuToCpu - GPU<br>
> > > >>>>>> Max Ratio Max Ratio Max Ratio Mess<br>
> > > >>>>>> AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s Mflop/s<br>
> > Count Size<br>
> > > >>>>>> Count Size %F<br>
> > > >>>>>><br>
> > > >>>>>><br>
> > ---------------------------------------------------------------------------------------------------------------------------------------------------------------<br>
> > > >>>>>> ....<br>
> > > >>>>>> MatLUFactorNum 12 1.0 *2.3416e+01* 1.0 0.00e+00 0.0 0.0e+00<br>
> > > >>>>>> 0.0e+00 0.0e+00 31 0 0 0 0 31 0 0 0 0 0 0<br>
> > *0<br>
> > > >>>>>> 0.00e+00 0 0.00e+00 0*<br>
> > > >>>>>><br>
> > > >>>>>> No CUDA version. The times are the same and no GPU<br>
> > > >>>>>> communication above. So SuperLU does not seem to be using GPUs.<br>
> > > >>>>>><br>
> > > >>>>>><br>
> > > >>>>>><br>
> > ------------------------------------------------------------------------------------------------------------------------<br>
> > > >>>>>> Event Count Time (sec) Flop<br>
> > > >>>>>> --- Global --- --- Stage ---- Total<br>
> > > >>>>>> Max Ratio Max Ratio Max Ratio Mess<br>
> > > >>>>>> AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s<br>
> > > >>>>>><br>
> > > >>>>>><br>
> > ------------------------------------------------------------------------------------------------------------------------<br>
> > > >>>>>> ....<br>
> > > >>>>>> MatLUFactorNum 12 1.0 *2.3421e+01* 1.0 0.00e+00 0.0 0.0e+00<br>
> > > >>>>>> 0.0e+00 0.0e+00 5 0 0 0 0 5 0 0 0 0 0<br>
> > > >>>>>><br>
> > > >>>>>> There are some differences: ex19 use DMDA and I use DMPlex,<br>
> > 'check'<br>
> > > >>>>>> is run in my home directory, where files can not be written, and<br>
> > I run my<br>
> > > >>>>>> code in the project areas.<br>
> > > >>>>>><br>
> > > >>>>>> The timings are different without superlu so I think superlu is<br>
> > being<br>
> > > >>>>>> used. THis is how I run this (w and w/o -mat_superlu_equil<br>
> > -dm_mat_type<br>
> > > >>>>>> sell)<br>
> > > >>>>>><br>
> > > >>>>>> jsrun -n 1 -a 1 -c 2 -g 1 ./ex113d_no_cuda -dim 3 -dm_view<br>
> > > >>>>>> hdf5:re33d.h5 -vec_view hdf5:re33d.h5::append -test_type spitzer<br>
> > -Ez 0<br>
> > > >>>>>> -petscspace_degree 2 -mass_petscspace_degree 2<br>
> > -petscspace_poly_tensor 1<br>
> > > >>>>>> -mass_petscspace_poly_tensor 1 -dm_type p8est -ion_masses 4<br>
> > -ion_charges 2<br>
> > > >>>>>> -thermal_temps 4,4 -n 1,.5 -n_0 1e20 -ts_monitor -ts_adapt_monitor<br>
> > > >>>>>> -snes_rtol 1.e-6 -snes_stol 1.e-9 -snes_monitor<br>
> > -snes_converged_reason<br>
> > > >>>>>> -snes_max_it 15 -ts_type arkimex -ts_exact_final_time stepover<br>
> > > >>>>>> -ts_arkimex_type 1bee -ts_max_snes_failures -1 -ts_rtol 1e-3<br>
> > -ts_dt 1e-1<br>
> > > >>>>>> -ts_adapt_clip .25,1.05 -ts_adapt_dt_max 10 -ts_adapt_dt_min 2e-2<br>
> > > >>>>>> -ts_max_time 3200 -ts_max_steps 1 -ts_adapt_scale_solve_failed<br>
> > 0.75<br>
> > > >>>>>> -ts_adapt_time_step_increase_delay 5 -pc_type lu -ksp_type preonly<br>
> > > >>>>>> -amr_levels_max 11 -amr_re_levels 0 -amr_z_refine1 0<br>
> > -amr_z_refine2 0<br>
> > > >>>>>> -amr_post_refine 0 -domain_radius -.95 -re_radius 4 -z_radius1 8<br>
> > -z_radius2<br>
> > > >>>>>> .1 -plot_dt .10 -impurity_source_type pulse -pulse_start_time 2600<br>
> > > >>>>>> -pulse_width_time 100 -pulse_rate 1e+0 -t_cold .005 -info<br>
> > :dm,tsadapt:<br>
> > > >>>>>> -sub_thread_block_size 4 -options_left -log_view<br>
> > -pc_factor_mat_solver_type<br>
> > > >>>>>> superlu -mat_superlu_equil -dm_mat_type sell<br>
> > > >>>>>><br>
> > > >>>>>> So there is a bug in ex19 on SUMMIT and I am not getting GPUs<br>
> > turned<br>
> > > >>>>>> on in SuperLU.<br>
> > > >>>>>> Thoughts?<br>
> > > >>>>>><br>
> > > >>>>>> Thanks,<br>
> > > >>>>>> Mark<br>
> > > >>>>>><br>
> > > >>>>>> 09:28 mark/feature-xgc-interface-rebase-v2 *= ~/petsc$ make<br>
> > > >>>>>> PETSC_DIR=/ccs/home/adams/petsc<br>
> > PETSC_ARCH=arch-summit-opt-gnu-cuda-omp<br>
> > > >>>>>> check<br>
> > > >>>>>> Running check examples to verify correct installation<br>
> > > >>>>>> Using PETSC_DIR=/ccs/home/adams/petsc and<br>
> > > >>>>>> PETSC_ARCH=arch-summit-opt-gnu-cuda-omp<br>
> > > >>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI<br>
> > > >>>>>> process<br>
> > > >>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI<br>
> > > >>>>>> processes<br>
> > > >>>>>> 2c2,39<br>
> > > >>>>>> < Number of SNES iterations = 2<br>
> > > >>>>>> ---<br>
> > > >>>>>><br>
> > > >>>>>> *> ex19: cudahook.cc:762: CUresult host_free_callback(void*):<br>
> > > >>>>>> Assertion `cacheNode != __null' failed.*> [h50n09:102287] ***<br>
> > > >>>>>> Process received signal ***<br>
> > > >>>>>> > CUDA version: v 10010<br>
> > > >>>>>> > CUDA Devices:<br>
> > > >>>>>> ><br>
> > > >>>>>> > 0 : Tesla V100-SXM2-16GB 7 0<br>
> > > >>>>>> > Global memory: 16128 mb<br>
> > > >>>>>> > Shared memory: 48 kb<br>
> > > >>>>>> > Constant memory: 64 kb<br>
> > > >>>>>> > Block registers: 65536<br>
> > > >>>>>> ><br>
> > > >>>>>> > [h50n09:102287] Signal: Aborted (6)<br>
> > > >>>>>> > [h50n09:102287] Associated errno: Unknown error 1072693248<br>
> > > >>>>>> (1072693248)<br>
> > > >>>>>> > [h50n09:102287] Signal code: User function (kill, sigsend,<br>
> > abort,<br>
> > > >>>>>> etc.) (0)<br>
> > > >>>>>> > [h50n09:102287] [ 0] [0x2000000504d8]<br>
> > > >>>>>> > [h50n09:102287] [ 1]<br>
> > /lib64/libc.so.6(abort+0x2b4)[0x200021bf2094]<br>
> > > >>>>>> > [h50n09:102287] [ 2] /lib64/libc.so.6(+0x356d4)[0x200021be56d4]<br>
> > > >>>>>> > [h50n09:102287] [ 3]<br>
> > > >>>>>> /lib64/libc.so.6(__assert_fail+0x64)[0x200021be57c4]<br>
> > > >>>>>> > [h50n09:102287] [ 4]<br>
> > > >>>>>><br>
> > /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/container/../lib/libpami_cudahook.so(_Z18host_free_callbackPv+0x2d8)[0x2000000cd2c8]<br>
> > > >>>>>> > [h50n09:102287] [ 5]<br>
> > > >>>>>><br>
> > /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/container/../lib/libpami_cudahook.so(cuMemFreeHost+0xb0)[0x2000000c3cc0]<br>
> > > >>>>>> > [h50n09:102287] [ 6]<br>
> > > >>>>>><br>
> > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(+0x42f50)[0x20000ed02f50]<br>
> > > >>>>>> > [h50n09:102287] [ 7]<br>
> > > >>>>>><br>
> > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(+0x11db8)[0x20000ecd1db8]<br>
> > > >>>>>> > [h50n09:102287] [ 8]<br>
> > > >>>>>><br>
> > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(cudaFreeHost+0x74)[0x20000ed12ea4]<br>
> > > >>>>>> > [h50n09:102287] [ 9]<br>
> > > >>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libsuperlu_dist.so.6(dDestroy_LU+0xc4)[0x20000195aff4]<br>
> > > >>>>>> > [h50n09:102287] [10]<br>
> > > >>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(+0x7cdb70)[0x2000008bdb70]<br>
> > > >>>>>> > [h50n09:102287] [11]<br>
> > > >>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(MatLUFactorNumeric+0x1ec)[0x2000005f1a8c]<br>
> > > >>>>>> > [h50n09:102287] [12]<br>
> > > >>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(+0xbf8270)[0x200000ce8270]<br>
> > > >>>>>> > [h50n09:102287] [13]<br>
> > > >>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(PCSetUp+0x1a4)[0x200000d8d5a4]<br>
> > > >>>>>> > [h50n09:102287] [14]<br>
> > > >>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(KSPSetUp+0x40c)[0x200000dc498c]<br>
> > > >>>>>> > [h50n09:102287] [15]<br>
> > > >>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(+0xcd56fc)[0x200000dc56fc]<br>
> > > >>>>>> > [h50n09:102287] [16]<br>
> > > >>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(KSPSolve+0x20)[0x200000dc8260]<br>
> > > >>>>>> > [h50n09:102287] [17]<br>
> > > >>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(+0xe0a170)[0x200000efa170]<br>
> > > >>>>>> > [h50n09:102287] [18]<br>
> > > >>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-opt-gnu-cuda-omp/lib/libpetsc.so.3.013(SNESSolve+0x814)[0x200000ebd394]<br>
> > > >>>>>> > [h50n09:102287] [19] ./ex19[0x10001a6c]<br>
> > > >>>>>> > [h50n09:102287] [20] /lib64/libc.so.6(+0x25200)[0x200021bd5200]<br>
> > > >>>>>> > [h50n09:102287] [21]<br>
> > > >>>>>> /lib64/libc.so.6(__libc_start_main+0xc4)[0x200021bd53f4]<br>
> > > >>>>>> > [h50n09:102287] *** End of error message ***<br>
> > > >>>>>> > ERROR: One or more process (first noticed rank 0) terminated<br>
> > with<br>
> > > >>>>>> signal 6<br>
> > > >>>>>> /ccs/home/adams/petsc/src/snes/tutorials<br>
> > > >>>>>> Possible problem with ex19 running with superlu_dist, diffs above<br>
> > > >>>>>><br>
> > > >>>>>><br>
> > > >>>>>><br>
> > > >>>>>><br>
> > > >>>>>> #!/usr/bin/env python<br>
> > > >>>>>> if __name__ == '__main__':<br>
> > > >>>>>> import sys<br>
> > > >>>>>> import os<br>
> > > >>>>>> sys.path.insert(0, os.path.abspath('config'))<br>
> > > >>>>>> import configure<br>
> > > >>>>>> configure_options = [<br>
> > > >>>>>> '--with-fc=0',<br>
> > > >>>>>> '--COPTFLAGS=-g -O2 -fPIC -fopenmp',<br>
> > > >>>>>> '--CXXOPTFLAGS=-g -O2 -fPIC -fopenmp',<br>
> > > >>>>>> '--FOPTFLAGS=-g -O2 -fPIC -fopenmp',<br>
> > > >>>>>> '--CUDAOPTFLAGS=-O2 -g',<br>
> > > >>>>>> '--with-ssl=0',<br>
> > > >>>>>> '--with-batch=0',<br>
> > > >>>>>> '--with-cxx=mpicxx',<br>
> > > >>>>>> '--with-mpiexec=jsrun -g1',<br>
> > > >>>>>> '--with-cuda=1',<br>
> > > >>>>>> '--with-cudac=nvcc',<br>
> > > >>>>>> '--download-p4est=1',<br>
> > > >>>>>> '--download-zlib',<br>
> > > >>>>>> '--download-hdf5=1',<br>
> > > >>>>>> '--download-metis',<br>
> > > >>>>>> '--download-superlu',<br>
> > > >>>>>> '--download-superlu_dist',<br>
> > > >>>>>> '--with-make-np=16',<br>
> > > >>>>>> # '--with-hwloc=0',<br>
> > > >>>>>> '--download-parmetis',<br>
> > > >>>>>> # '--download-hypre',<br>
> > > >>>>>> '--download-triangle',<br>
> > > >>>>>> # '--download-amgx',<br>
> > > >>>>>> # '--download-fblaslapack',<br>
> > > >>>>>> '--with-blaslapack-lib=-L' +<br>
> > > >>>>>> os.environ['OLCF_NETLIB_LAPACK_ROOT'] + '/lib64 -lblas -llapack',<br>
> > > >>>>>> '--with-cc=mpicc',<br>
> > > >>>>>> # '--with-fc=mpif90',<br>
> > > >>>>>> '--with-shared-libraries=1',<br>
> > > >>>>>> # '--known-mpi-shared-libraries=1',<br>
> > > >>>>>> '--with-x=0',<br>
> > > >>>>>> '--with-64-bit-indices=0',<br>
> > > >>>>>> '--with-debugging=0',<br>
> > > >>>>>> 'PETSC_ARCH=arch-summit-opt-gnu-cuda-omp',<br>
> > > >>>>>> '--with-openmp=1',<br>
> > > >>>>>> '--with-threadsaftey=1',<br>
> > > >>>>>> '--with-log=1'<br>
> > > >>>>>> ]<br>
> > > >>>>>> configure.petsc_configure(configure_options)<br>
> > > >>>>>><br>
> > > >>>>>><br>
> > > >>>>>><br>
> > > >>>>>> On Wed, Apr 15, 2020 at 9:58 PM Satish Balay <<a href="mailto:balay@mcs.anl.gov" target="_blank">balay@mcs.anl.gov</a>><br>
> > > >>>>>> wrote:<br>
> > > >>>>>><br>
> > > >>>>>>> The crash is inside Superlu_DIST - so don't know what to suggest.<br>
> > > >>>>>>><br>
> > > >>>>>>> Might have to debug this via debugger and check with Sherry.<br>
> > > >>>>>>><br>
> > > >>>>>>> Satish<br>
> > > >>>>>>><br>
> > > >>>>>>> On Wed, 15 Apr 2020, Mark Adams wrote:<br>
> > > >>>>>>><br>
> > > >>>>>>> > Ah, OK 'check' will test SuperLU. Semi worked:<br>
> > > >>>>>>> ><br>
> > > >>>>>>> > s20:13 mark/feature-xgc-interface-rebase *= ~/petsc$ make<br>
> > > >>>>>>> > PETSC_DIR=/ccs/home/adams/petsc<br>
> > > >>>>>>> PETSC_ARCH=arch-summit-dbg-gnu-cuda-omp<br>
> > > >>>>>>> > check<br>
> > > >>>>>>> > Running check examples to verify correct installation<br>
> > > >>>>>>> > Using PETSC_DIR=/ccs/home/adams/petsc and<br>
> > > >>>>>>> > PETSC_ARCH=arch-summit-dbg-gnu-cuda-omp<br>
> > > >>>>>>> > C/C++ example src/snes/tutorials/ex19 run successfully with 1<br>
> > MPI<br>
> > > >>>>>>> process<br>
> > > >>>>>>> > C/C++ example src/snes/tutorials/ex19 run successfully with 2<br>
> > MPI<br>
> > > >>>>>>> processes<br>
> > > >>>>>>> > 2c2,38<br>
> > > >>>>>>> > < Number of SNES iterations = 2<br>
> > > >>>>>>> > ---<br>
> > > >>>>>>> > > CUDA version: v 10010<br>
> > > >>>>>>> > > CUDA Devices:<br>
> > > >>>>>>> > ><br>
> > > >>>>>>> > > 0 : Tesla V100-SXM2-16GB 7 0<br>
> > > >>>>>>> > > Global memory: 16128 mb<br>
> > > >>>>>>> > > Shared memory: 48 kb<br>
> > > >>>>>>> > > Constant memory: 64 kb<br>
> > > >>>>>>> > > Block registers: 65536<br>
> > > >>>>>>> > ><br>
> > > >>>>>>> > > ex19: cudahook.cc:762: CUresult host_free_callback(void*):<br>
> > > >>>>>>> Assertion<br>
> > > >>>>>>> > `cacheNode != __null' failed.<br>
> > > >>>>>>> > > [h16n07:78357] *** Process received signal ***<br>
> > > >>>>>>> > > [h16n07:78357] Signal: Aborted (6)<br>
> > > >>>>>>> > > [h16n07:78357] Signal code: (1704218624)<br>
> > > >>>>>>> > > [h16n07:78357] [ 0] [0x2000000504d8]<br>
> > > >>>>>>> > > [h16n07:78357] [ 1]<br>
> > /lib64/libc.so.6(abort+0x2b4)[0x200023992094]<br>
> > > >>>>>>> > > [h16n07:78357] [ 2]<br>
> > /lib64/libc.so.6(+0x356d4)[0x2000239856d4]<br>
> > > >>>>>>> > > [h16n07:78357] [ 3]<br>
> > > >>>>>>> /lib64/libc.so.6(__assert_fail+0x64)[0x2000239857c4]<br>
> > > >>>>>>> > > [h16n07:78357] [ 4]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/container/../lib/libpami_cudahook.so(_Z18host_free_callbackPv+0x2d8)[0x2000000cd2c8]<br>
> > > >>>>>>> > > [h16n07:78357] [ 5]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.1.2-20200121-awz2q5brde7wgdqqw4ugalrkukeub4eb/container/../lib/libpami_cudahook.so(cuMemFreeHost+0xb0)[0x2000000c3cc0]<br>
> > > >>>>>>> > > [h16n07:78357] [ 6]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(+0x42f50)[0x200010aa2f50]<br>
> > > >>>>>>> > > [h16n07:78357] [ 7]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(+0x11db8)[0x200010a71db8]<br>
> > > >>>>>>> > > [h16n07:78357] [ 8]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /sw/summit/cuda/10.1.243/lib64/libcudart.so.10.1(cudaFreeHost+0x74)[0x200010ab2ea4]<br>
> > > >>>>>>> > > [h16n07:78357] [ 9]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libsuperlu_dist.so.6(dDestroy_LU+0x150)[0x200003188058]<br>
> > > >>>>>>> > > [h16n07:78357] [10]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(+0x12ebc6c)[0x2000013dbc6c]<br>
> > > >>>>>>> > > [h16n07:78357] [11]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(MatLUFactorNumeric+0x934)[0x200000d2fae4]<br>
> > > >>>>>>> > > [h16n07:78357] [12]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(+0x1cca7a4)[0x200001dba7a4]<br>
> > > >>>>>>> > > [h16n07:78357] [13]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(PCSetUp+0xde0)[0x200001f3f990]<br>
> > > >>>>>>> > > [h16n07:78357] [14]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(KSPSetUp+0x1848)[0x200001fc5594]<br>
> > > >>>>>>> > > [h16n07:78357] [15]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(+0x1ed9908)[0x200001fc9908]<br>
> > > >>>>>>> > > [h16n07:78357] [16]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(KSPSolve+0x5d0)[0x200001fcc690]<br>
> > > >>>>>>> > > [h16n07:78357] [17]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(+0x21e16ac)[0x2000022d16ac]<br>
> > > >>>>>>> > > [h16n07:78357] [18]<br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > /ccs/home/adams/petsc/arch-summit-dbg-gnu-cuda-omp/lib/libpetsc.so.3.013(SNESSolve+0x23f4)[0x2000022255c0]<br>
> > > >>>>>>> > > [h16n07:78357] [19] ./ex19[0x10002ac8]<br>
> > > >>>>>>> > > [h16n07:78357] [20]<br>
> > /lib64/libc.so.6(+0x25200)[0x200023975200]<br>
> > > >>>>>>> > > [h16n07:78357] [21]<br>
> > > >>>>>>> > /lib64/libc.so.6(__libc_start_main+0xc4)[0x2000239753f4]<br>
> > > >>>>>>> > > [h16n07:78357] *** End of error message ***<br>
> > > >>>>>>> > > ERROR: One or more process (first noticed rank 0) terminated<br>
> > > >>>>>>> with signal<br>
> > > >>>>>>> > 6<br>
> > > >>>>>>> > /ccs/home/adams/petsc/src/snes/tutorials<br>
> > > >>>>>>> > Possible problem with ex19 running with superlu_dist, diffs<br>
> > above<br>
> > > >>>>>>> > =========================================<br>
> > > >>>>>>> ><br>
> > > >>>>>>> > On Wed, Apr 15, 2020 at 5:58 PM Satish Balay <<br>
> > <a href="mailto:balay@mcs.anl.gov" target="_blank">balay@mcs.anl.gov</a>><br>
> > > >>>>>>> wrote:<br>
> > > >>>>>>> ><br>
> > > >>>>>>> > > Please send configure.log<br>
> > > >>>>>>> > ><br>
> > > >>>>>>> > > This is what I get on my linux build:<br>
> > > >>>>>>> > ><br>
> > > >>>>>>> > > [balay@p1 petsc]$ ./configure<br>
> > > >>>>>>> > > --with-mpi-dir=/home/petsc/soft/openmpi-4.0.2-cuda<br>
> > --with-cuda=1<br>
> > > >>>>>>> > > --with-openmp=1 --download-superlu-dist=1 && make && make<br>
> > check<br>
> > > >>>>>>> > > <snip><br>
> > > >>>>>>> > > Running check examples to verify correct installation<br>
> > > >>>>>>> > > Using PETSC_DIR=/home/balay/petsc and<br>
> > > >>>>>>> PETSC_ARCH=arch-linux-c-debug<br>
> > > >>>>>>> > > C/C++ example src/snes/tutorials/ex19 run successfully with 1<br>
> > > >>>>>>> MPI process<br>
> > > >>>>>>> > > C/C++ example src/snes/tutorials/ex19 run successfully with 2<br>
> > > >>>>>>> MPI processes<br>
> > > >>>>>>> > > 1a2,19<br>
> > > >>>>>>> > > > CUDA version: v 10020<br>
> > > >>>>>>> > > > CUDA Devices:<br>
> > > >>>>>>> > > ><br>
> > > >>>>>>> > > > 0 : Quadro T2000 7 5<br>
> > > >>>>>>> > > > Global memory: 3911 mb<br>
> > > >>>>>>> > > > Shared memory: 48 kb<br>
> > > >>>>>>> > > > Constant memory: 64 kb<br>
> > > >>>>>>> > > > Block registers: 65536<br>
> > > >>>>>>> > > ><br>
> > > >>>>>>> > > > CUDA version: v 10020<br>
> > > >>>>>>> > > > CUDA Devices:<br>
> > > >>>>>>> > > ><br>
> > > >>>>>>> > > > 0 : Quadro T2000 7 5<br>
> > > >>>>>>> > > > Global memory: 3911 mb<br>
> > > >>>>>>> > > > Shared memory: 48 kb<br>
> > > >>>>>>> > > > Constant memory: 64 kb<br>
> > > >>>>>>> > > > Block registers: 65536<br>
> > > >>>>>>> > > ><br>
> > > >>>>>>> > > /home/balay/petsc/src/snes/tutorials<br>
> > > >>>>>>> > > Possible problem with ex19 running with superlu_dist, diffs<br>
> > above<br>
> > > >>>>>>> > > =========================================<br>
> > > >>>>>>> > > Fortran example src/snes/tutorials/ex5f run successfully<br>
> > with 1<br>
> > > >>>>>>> MPI process<br>
> > > >>>>>>> > > Completed test examples<br>
> > > >>>>>>> > ><br>
> > > >>>>>>> > ><br>
> > > >>>>>>> > > On Wed, 15 Apr 2020, Mark Adams wrote:<br>
> > > >>>>>>> > ><br>
> > > >>>>>>> > > > On Wed, Apr 15, 2020 at 5:17 PM Satish Balay <<br>
> > > >>>>>>> <a href="mailto:balay@mcs.anl.gov" target="_blank">balay@mcs.anl.gov</a>> wrote:<br>
> > > >>>>>>> > > ><br>
> > > >>>>>>> > > > > The build should work. It should give some verbose info<br>
> > [at<br>
> > > >>>>>>> runtime]<br>
> > > >>>>>>> > > > > regarding GPUs - from the following code.<br>
> > > >>>>>>> > > > ><br>
> > > >>>>>>> > > > ><br>
> > > >>>>>>> > > > I don't see that and I am running GPUs in my code and have<br>
> > > >>>>>>> gotten<br>
> > > >>>>>>> > > cusparse<br>
> > > >>>>>>> > > > LU to run. Should I use '-info :sys:' ?<br>
> > > >>>>>>> > > ><br>
> > > >>>>>>> > > ><br>
> > > >>>>>>> > > > > >>>>> SRC/cublas_utils.c >>>>>>>>>>><br>
> > > >>>>>>> > > > > void DisplayHeader()<br>
> > > >>>>>>> > > > > {<br>
> > > >>>>>>> > > > > const int kb = 1024;<br>
> > > >>>>>>> > > > > const int mb = kb * kb;<br>
> > > >>>>>>> > > > > // cout << "NBody.GPU" << endl << "=========" <<<br>
> > endl <<<br>
> > > >>>>>>> endl;<br>
> > > >>>>>>> > > > ><br>
> > > >>>>>>> > > > > printf("CUDA version: v %d\n",CUDART_VERSION);<br>
> > > >>>>>>> > > > > //cout << "Thrust version: v" <<<br>
> > THRUST_MAJOR_VERSION <<<br>
> > > >>>>>>> "." <<<br>
> > > >>>>>>> > > > > THRUST_MINOR_VERSION << endl << endl;<br>
> > > >>>>>>> > > > ><br>
> > > >>>>>>> > > > > int devCount;<br>
> > > >>>>>>> > > > > cudaGetDeviceCount(&devCount);<br>
> > > >>>>>>> > > > > printf( "CUDA Devices: \n \n");<br>
> > > >>>>>>> > > > > <snip><br>
> > > >>>>>>> > > > > <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<br>
> > > >>>>>>> > > > ><br>
> > > >>>>>>> > > > > Satish<br>
> > > >>>>>>> > > > ><br>
> > > >>>>>>> > > > > On Wed, 15 Apr 2020, Junchao Zhang wrote:<br>
> > > >>>>>>> > > > ><br>
> > > >>>>>>> > > > > > I remember Barry said superlu gpu support is broken.<br>
> > > >>>>>>> > > > > > --Junchao Zhang<br>
> > > >>>>>>> > > > > ><br>
> > > >>>>>>> > > > > ><br>
> > > >>>>>>> > > > > > On Wed, Apr 15, 2020 at 3:47 PM Mark Adams <<br>
> > > >>>>>>> <a href="mailto:mfadams@lbl.gov" target="_blank">mfadams@lbl.gov</a>> wrote:<br>
> > > >>>>>>> > > > > ><br>
> > > >>>>>>> > > > > > > How does one use SuperLU with GPUs. I don't seem to<br>
> > get<br>
> > > >>>>>>> any GPU<br>
> > > >>>>>>> > > > > > > performance data so I assume GPUs are not getting<br>
> > turned<br>
> > > >>>>>>> on. Am I<br>
> > > >>>>>>> > > wrong<br>
> > > >>>>>>> > > > > > > about that?<br>
> > > >>>>>>> > > > > > ><br>
> > > >>>>>>> > > > > > > I configure with:<br>
> > > >>>>>>> > > > > > > configure options: --with-fc=0 --COPTFLAGS="-g -O2<br>
> > -fPIC<br>
> > > >>>>>>> -fopenmp"<br>
> > > >>>>>>> > > > > > > --CXXOPTFLAGS="-g -O2 -fPIC -fopenmp" --FOPTFLAGS="-g<br>
> > > >>>>>>> -O2 -fPIC<br>
> > > >>>>>>> > > > > -fopenmp"<br>
> > > >>>>>>> > > > > > > --CUDAOPTFLAGS="-O2 -g" --with-ssl=0 --with-batch=0<br>
> > > >>>>>>> > > --with-cxx=mpicxx<br>
> > > >>>>>>> > > > > > > --with-mpiexec="jsrun -g1" --with-cuda=1<br>
> > > >>>>>>> --with-cudac=nvcc<br>
> > > >>>>>>> > > > > > > --download-p4est=1 --download-zlib --download-hdf5=1<br>
> > > >>>>>>> > > --download-metis<br>
> > > >>>>>>> > > > > > > --download-superlu --download-superlu_dist<br>
> > > >>>>>>> --with-make-np=16<br>
> > > >>>>>>> > > > > > > --download-parmetis --download-triangle<br>
> > > >>>>>>> > > > > > ><br>
> > > >>>>>>> > > > ><br>
> > > >>>>>>> > ><br>
> > > >>>>>>><br>
> > --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64<br>
> > > >>>>>>> > > > > > > -lblas -llapack" --with-cc=mpicc<br>
> > > >>>>>>> --with-shared-libraries=1<br>
> > > >>>>>>> > > --with-x=0<br>
> > > >>>>>>> > > > > > > --with-64-bit-indices=0 --with-debugging=0<br>
> > > >>>>>>> > > > > > > PETSC_ARCH=arch-summit-opt-gnu-cuda-omp<br>
> > --with-openmp=1<br>
> > > >>>>>>> > > > > > > --with-threadsaftey=1 --with-log=1<br>
> > > >>>>>>> > > > > > ><br>
> > > >>>>>>> > > > > > > Thanks,<br>
> > > >>>>>>> > > > > > > Mark<br>
> > > >>>>>>> > > > > > ><br>
> > > >>>>>>> > > > > ><br>
> > > >>>>>>> > > > ><br>
> > > >>>>>>> > > > ><br>
> > > >>>>>>> > > ><br>
> > > >>>>>>> > ><br>
> > > >>>>>>> > ><br>
> > > >>>>>>> ><br>
> > > >>>>>>><br>
> > > >>>>>>><br>
> > ><br>
> ><br>
> ><br>
> <br>
<br>
</blockquote></div>