================================================================================ ================================================================================ Starting configure run at Wed, 15 Apr 2020 21:30:44 +0800 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --prefix=/Users/fire/opt/petsc313 --with-zlib --with-viennacl=1 --with-viennacl-dir=/Users/fire/opt/viennacl Working directory: /Volumes/data3/fun2/demox/petsc-3.13.0 Machine platform: ('Darwin', 'iMac-Pro.local', '19.4.0', 'Darwin Kernel Version 19.4.0: Wed Mar 4 22:28:40 PST 2020; root:xnu-6153.101.6~15/RELEASE_X86_64', 'x86_64', 'i386') Python version: 2.7.16 (default, Feb 29 2020, 01:55:37) [GCC 4.2.1 Compatible Apple LLVM 11.0.3 (clang-1103.0.29.20) (-macos10.15-objc- ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/framework.py:911) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:911) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking for program /usr/local/opt/openssl/bin/lldb...not found Checking for program /usr/local/opt/curl/bin/lldb...not found Checking for program /usr/local/opt/sqlite/bin/lldb...not found Checking for program /usr/local/opt/qt/bin/lldb...not found Checking for program /usr/local/opt/icu4c/sbin/lldb...not found Checking for program /usr/local/opt/icu4c/bin/lldb...not found Checking for program /Users/fire/opt/itk500/bin/lldb...not found Checking for program /Users/fire/opt/mfem34/bin/lldb...not found Checking for program /Users/fire/opt/gismo/bin/lldb...not found Checking for program /Users/fire/opt/petsc313/bin/lldb...not found Checking for program /Users/fire/opt/openmpi402/bin/lldb...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/lldb...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/lldb...not found Checking for program /usr/local/opt/sqlite/bin/lldb...not found Checking for program /usr/local/sbin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /usr/bin/lldb...found Defined make macro "LLDB" to "/usr/bin/lldb" Defined "USE_DEBUGGER" to ""lldb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking for program /usr/local/opt/openssl/bin/dsymutil...not found Checking for program /usr/local/opt/curl/bin/dsymutil...not found Checking for program /usr/local/opt/sqlite/bin/dsymutil...not found Checking for program /usr/local/opt/qt/bin/dsymutil...not found Checking for program /usr/local/opt/icu4c/sbin/dsymutil...not found Checking for program /usr/local/opt/icu4c/bin/dsymutil...not found Checking for program /Users/fire/opt/itk500/bin/dsymutil...not found Checking for program /Users/fire/opt/mfem34/bin/dsymutil...not found Checking for program /Users/fire/opt/gismo/bin/dsymutil...not found Checking for program /Users/fire/opt/petsc313/bin/dsymutil...not found Checking for program /Users/fire/opt/openmpi402/bin/dsymutil...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/dsymutil...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/dsymutil...not found Checking for program /usr/local/opt/sqlite/bin/dsymutil...not found Checking for program /usr/local/sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" child config.utilities.debuggers 0.016492 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 13 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Mar 29, 2020" #define PETSC_VERSION_GIT "v3.13" #define PETSC_VERSION_DATE_GIT "2020-03-29 21:59:40 -0500" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.002795 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000274 ================================================================================ TEST configureGit from config.sourceControl(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/opt/openssl/bin/git...not found Checking for program /usr/local/opt/curl/bin/git...not found Checking for program /usr/local/opt/sqlite/bin/git...not found Checking for program /usr/local/opt/qt/bin/git...not found Checking for program /usr/local/opt/icu4c/sbin/git...not found Checking for program /usr/local/opt/icu4c/bin/git...not found Checking for program /Users/fire/opt/itk500/bin/git...not found Checking for program /Users/fire/opt/mfem34/bin/git...not found Checking for program /Users/fire/opt/gismo/bin/git...not found Checking for program /Users/fire/opt/petsc313/bin/git...not found Checking for program /Users/fire/opt/openmpi402/bin/git...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/git...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/git...not found Checking for program /usr/local/opt/sqlite/bin/git...not found Checking for program /usr/local/sbin/git...not found Checking for program /usr/local/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 2.26.0 child config.sourceControl 0.008379 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) This is a tarball installation child PETSc.options.petscclone 0.000749 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: arch-darwin-c-debug/lib/petsc/conf/configure-hash Deleting configure hash file: arch-darwin-c-debug/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-darwin-c-debug/lib/petsc/conf/configure-hash child PETSc.options.arch 0.015647 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/Users/fire/opt/petsc313" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/installDir.py:80) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:80) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/installDir.py:73) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:73) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/installDir.py:57) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:57) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /Users/fire/fun2/demox/petsc-3.13.0/arch-darwin-c-debug/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/installDir.py:93) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:93) child PETSc.options.installDir 0.001219 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000271 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000619 ================================================================================ TEST printEnvVariables from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1694) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1694) **** printenv **** CPPFLAGS=-I/usr/local/opt/openssl/include LESS=-R LC_CTYPE=UTF-8 TERM_PROGRAM_VERSION=433 LOGNAME=fire USER=fire HOME=/Users/fire PATH=/usr/local/opt/openssl/bin:/usr/local/opt/curl/bin:/usr/local/opt/sqlite/bin:/usr/local/opt/qt/bin:/usr/local/opt/icu4c/sbin:/usr/local/opt/icu4c/bin:/Users/fire/opt/itk500/bin:/Users/fire/opt/mfem34/bin:/Users/fire/opt/gismo/bin:/Users/fire/opt/petsc313/bin:/Users/fire/opt/openmpi402/bin:/usr/local/opt/gnu-tar/libexec/gnubin:/usr/local/opt/gnu-sed/libexec/gnubin:/usr/local/opt/sqlite/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin ZSH=/Users/fire/.oh-my-zsh DISPLAY=/private/tmp/com.apple.launchd.JHEc2udqys/org.macosforge.xquartz:0 TERM_PROGRAM=Apple_Terminal LANG=en_US.UTF-8 TERM=xterm-256color SHELL=/bin/zsh VERSIONER_PYTHON_VERSION=2.7 SHLVL=1 XPC_FLAGS=0x0 PETSC_DIR=/Users/fire/fun2/demox/petsc-3.13.0 _=/Users/fire/fun2/demox/petsc-3.13.0/./configure LDFLAGS=-L/usr/local/opt/openssl/lib TERM_SESSION_ID=D56315C4-0243-402C-9CFA-CF8E5AED4864 XPC_SERVICE_NAME=0 SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.rJSFJUpIRs/Listeners PKG_CONFIG_PATH=/usr/local/opt/qt/lib/pkgconfig:/Users/fire/opt/petsc313/lib/pkgconfig: LC_ALL=en_US.UTF-8 TMPDIR=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/ LSCOLORS=Gxfxcxdxbxegedabagacad OLDPWD=/Users/fire/fun2/demox __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 PWD=/Users/fire/fun2/demox/petsc-3.13.0 PAGER=less ================================================================================ TEST resetEnvCompilers from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1701) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1701) =============================================================================== ***** WARNING: CPPFLAGS (set to -I/usr/local/opt/openssl/include) found in environment variables - ignoring use ./configure CPPFLAGS=$CPPFLAGS if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: LDFLAGS (set to -L/usr/local/opt/openssl/lib) found in environment variables - ignoring use ./configure LDFLAGS=$LDFLAGS if you really want to use that value ****** =============================================================================== ================================================================================ TEST checkEnvCompilers from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1731) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1731) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1664) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1664) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1685) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1685) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:434) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:434) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:604) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:604) Locate a functional C compiler Checking for program /usr/local/opt/openssl/bin/mpicc...not found Checking for program /usr/local/opt/curl/bin/mpicc...not found Checking for program /usr/local/opt/sqlite/bin/mpicc...not found Checking for program /usr/local/opt/qt/bin/mpicc...not found Checking for program /usr/local/opt/icu4c/sbin/mpicc...not found Checking for program /usr/local/opt/icu4c/bin/mpicc...not found Checking for program /Users/fire/opt/itk500/bin/mpicc...not found Checking for program /Users/fire/opt/mfem34/bin/mpicc...not found Checking for program /Users/fire/opt/gismo/bin/mpicc...not found Checking for program /Users/fire/opt/petsc313/bin/mpicc...not found Checking for program /Users/fire/opt/openmpi402/bin/mpicc...found Defined make macro "CC" to "mpicc" All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest to see if it can be run Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpicc --version stdout: Apple clang version 11.0.3 (clang-1103.0.32.29) Target: x86_64-apple-darwin19.4.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ================================================================================ TEST checkCPreprocessor from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:643) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:643) Locate a functional C preprocessor Checking for program /usr/local/opt/openssl/bin/mpicc...not found Checking for program /usr/local/opt/curl/bin/mpicc...not found Checking for program /usr/local/opt/sqlite/bin/mpicc...not found Checking for program /usr/local/opt/qt/bin/mpicc...not found Checking for program /usr/local/opt/icu4c/sbin/mpicc...not found Checking for program /usr/local/opt/icu4c/bin/mpicc...not found Checking for program /Users/fire/opt/itk500/bin/mpicc...not found Checking for program /Users/fire/opt/mfem34/bin/mpicc...not found Checking for program /Users/fire/opt/gismo/bin/mpicc...not found Checking for program /Users/fire/opt/petsc313/bin/mpicc...not found Checking for program /Users/fire/opt/openmpi402/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkCUDACompiler from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:679) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:679) Locate a functional CUDA compiler Checking for program /usr/local/opt/openssl/bin/nvcc...not found Checking for program /usr/local/opt/curl/bin/nvcc...not found Checking for program /usr/local/opt/sqlite/bin/nvcc...not found Checking for program /usr/local/opt/qt/bin/nvcc...not found Checking for program /usr/local/opt/icu4c/sbin/nvcc...not found Checking for program /usr/local/opt/icu4c/bin/nvcc...not found Checking for program /Users/fire/opt/itk500/bin/nvcc...not found Checking for program /Users/fire/opt/mfem34/bin/nvcc...not found Checking for program /Users/fire/opt/gismo/bin/nvcc...not found Checking for program /Users/fire/opt/petsc313/bin/nvcc...not found Checking for program /Users/fire/opt/openmpi402/bin/nvcc...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/nvcc...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/nvcc...not found Checking for program /usr/local/opt/sqlite/bin/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /Library/TeX/texbin/nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /Users/fire/fun2/demox/petsc-3.13.0/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['c_rehash', 'openssl'] Warning accessing /usr/local/opt/curl/bin gives errors: [Errno 2] No such file or directory: '/usr/local/opt/curl/bin' ['sqlite3'] ['qmake', 'qmlplugindump', 'tracegen', 'canbusutil', 'macdeployqt', 'rcc', 'qmlprofiler', 'lrelease-pro', 'balsam', 'qmltestrunner', 'lupdate', 'meshdebug', 'lrelease', 'uic', 'macchangeqt', 'lupdate-pro', 'fixqt4headers.pl', 'xmlpatterns', 'qdbusxml2cpp', 'qmlmin', 'qmlimportscanner', 'qtattributionsscanner', 'xmlpatternsvalidator', 'repc', 'qwebengine_convert_dict', 'qdistancefieldgenerator', 'qtpaths', 'lconvert', 'qmlcachegen', 'qmllint', 'qcollectiongenerator', 'qlalr', 'qscxmlc', 'qvkgen', 'qgltf', 'qdbus', 'qhelpgenerator', 'qmleasing', 'qdbuscpp2xml', 'lprodump', 'qtdiag', 'syncqt.pl', 'qtplugininfo', 'qmlscene', 'qmlpreview', 'moc'] ['gennorm2', 'escapesrc', 'gensprep', 'icupkg', 'gencmn', 'genccode'] ['makeconv', 'gencnval', 'icu-config', 'gencfu', 'icuinfo', 'gendict', 'genrb', 'pkgdata', 'genbrk', 'derb', 'uconv'] Warning accessing /Users/fire/opt/itk500/bin gives errors: [Errno 2] No such file or directory: '/Users/fire/opt/itk500/bin' Warning accessing /Users/fire/opt/mfem34/bin gives errors: [Errno 2] No such file or directory: '/Users/fire/opt/mfem34/bin' Warning accessing /Users/fire/opt/gismo/bin gives errors: [Errno 2] No such file or directory: '/Users/fire/opt/gismo/bin' ['cdfdiff', 'nc-config', 'nccopy', 'ncdump', 'ncgen', 'ncgen3', 'ncmpidiff', 'ncmpidump', 'ncmpigen', 'ncoffsets', 'ncvalidator', 'pnetcdf-config', 'pnetcdf_version'] ['aggregate_profile.pl', 'mpic++', 'mpicc', 'mpicxx', 'mpiexec', 'mpif77', 'mpif90', 'mpifort', 'mpirun', 'ompi-clean', 'ompi-server', 'ompi_info', 'opal_wrapper', 'orte-clean', 'orte-info', 'orte-server', 'ortecc', 'orted', 'orterun', 'profile2mat.pl'] ['tar'] ['sed'] ['sqlite3'] ['unbound-anchor', 'unbound-checkconf', 'unbound-control', 'unbound', 'unbound-control-setup', 'unbound-host', '.keepme'] ['ndmetis', 'cpan', 'ppmtouil', 'rubberband', 'pip3.7', 'lzmainfo', 'vtkWrapHierarchy-8.2', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'gtar', 'ppmtoyuvsplit', 'pbmtonokia', 'dot2gxl', 'leaftoppm', 'dvipdf', 'rview', 'event_rpcgen.py', 'pnminvert', 'lame', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'vim', 'gif2rgb', 'gen-enc-table', 'pgmslice', 'pktdumper', 'ppmshadow', 'anytopnm', 'tree', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'c++-9', 'pbmtoescp2', 'ppmcie', 'x86_64-apple-darwin19-gcc-9', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'gmake', 'webpng', 'identify', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'ffhash', 'palmtopnm', 'pamseq', 'pcre2grep', 'convertsegfilestops', 'mpif90', 'fitstopnm', 'gifclrmp', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'montage', 'ppmmix', 'gdcmtar', 'wget', 'ffmpeg', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'nf-config', 'pgmmake', 'pamaltsat', 'pbmtog3', 'instmodsh', 'cluster', 'pbmtomrf', 'animate', 'git-gui', 'pamtilt', 'MagickCore-config', 'sexp-conv', 'MagickWand-config', 'perlivp', 'ps2ps', 'pbmtodjvurle', 'gv2gml', 'h5copy', 'vi', 'gdcmanon', 'clean-diff', 'x86_64-apple-darwin19-gcc-9.3.0', 'xzdec', 'luac5.3', 'pod2usage', 'tiffsplit', 'pambayer', 'gxl2dot', 'ppmforge', 'corelist', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'gts2oogl', 'mtvtoppm', 'pamstretch', 'vtkWrapPythonInit-8.2', 'h52gif', 'gdcmraw', 'fax2tiff', 'tred', 'vtkWrapJava-8.2', 'pamfunc', 'pcdovtoppm', 'linkicc', 'fourcc2pixfmt', 'git-receive-pack', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'rtmpsuck', 'pnmpaste', 'pamsharpness', 'unflatten', 'gdcmscanner', 'opj_compress', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'gtscompare', 'vimdiff', 'libnetcfg', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'b2', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'swig', 'autoscan', 'gd2togif', '411toppm', 'orted', 'gcc-ranlib-9', 'gfortran', 'mm2gv', 'asn1Decoding', 'opj_dump', '2to3', 'gdcmdump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'pamfind', 'ompi_info', 'gs', 'png-fix-itxt', 'dot', 'pamslice', 'pamsharpmap', 'ppmtotga', 'xxd', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'encguess', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'bd_info', 'opj_decompress', 'tiffdump', 'convertfilestops', 'pamaddnoise', 'g++-9', 'vtkWrapPython-8.2', 'h5unjam', 'pbmtogem', 'ppmspread', 'seek_print', 'ppmddumpfont', 'gitk', 'fc-pattern', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'rtmpdump', 'unxz', 'ppmdmkfont', 'pbmtolps', 'hwloc-distrib', 'libav-merge-next-commit', 'tiff2bw', 'pammasksharpen', 'jiv', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'gnutls-serv', 'sunicontopnm', 'exrmultiview', 'pcre2test', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'cjpeg', 'cscope', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'easy_install-3.8', 'aggregate_profile.pl', 'escp2topbm', 'jpegtran', 'gvpack', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'ompi-server', 'pod2text', 'yuvtoppm', 'xzegrep', 'gsettings', 'ps2pdfwr', 'gv2gxl', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'nccopy', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'ccache-swig', 'markdown', 'pnmtopng', 'ptardiff', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'perl5.30.2', 'gpcl6', 'xtractprotos', 'twopi', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'DRAWEXE', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'diffimg', 'Magick++-config', 'json_pp', 'pktopbm', 'pgmtolispm', 'normalize.py', 'fiascotopnm', 'pamdepth', 'sidxindex', 'update-mime-database', 'perl', 'gsdj', 'psktool', 'hwloc-calc', 'gif2h5', 'stream', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'ex', 'perlbug', 'xzfgrep', 'sirtopnm', 'gtstemplate', 'webpinfo', 'piconv', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'profile2mat.pl', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'graphml2gv', 'ptargrep', 'pamtompfont', 'h2ph', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 'asn1Coding', 'pnmenlarge', 'rvim', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'make_chlayout_test', 'vimtutor', 'gsnd', 'ppmtopi1', 'ps2pdf13', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'prove', 'pamgetcolor', 'podchecker', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'gdcmdiff', 'rtmpgw', 'rletopnm', 'pngtogd2', 'converttopdf', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'patchwork', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'shasum', 'x86_64-apple-darwin19-gcc-ranlib-9', 'autoupdate', 'gs-X11', 'pnmtosir', 'sccmap', 'pambackground', 'manweb', 'orte-clean', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'python3.7m', 'git-upload-archive', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'ptar', 'pnmtile', 'gdcmimg', 'annotate', 'pamtopnm', 'tesseract', 'fftwf-wisdom', 'happrox', 'pamunlookup', 'pamlevels', 'tiffcrop', 'neotoppm', 'wbmptopbm', 'crypto_bench', 'pbmtobbnbg', 'h5mkgrp', 'gvmap', 'pamrgbatopng', 'rlatopam', 'python3.7m-config', 'pgmramp', 'ocs', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'gts2dxf', 'pnmhisteq', 'gemtopbm', 'idle3', 'cl2c', 'mpmetis', 'gdcmpgif', 'DRAWEXE-7.4.0', 'nettle-pbkdf2', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'gnutls-cli-debug', 'ximtoppm', 'glib-compile-resources', 'gdcmconv', 'pamtogif', 'ppmtoacad', 'mogrify', 'mongoose', 'cpp-9', 'lua', 'draw.sh', 'ps2ascii', 'pl2pm', 'unwrap-diff', 'gen-rc', 'pamdice', 'macptopbm', 'composite', 'pamtosvg', 'pbmtogo', 'pkcs1-conv', 'neato', 'ppmtolj', 'ppmtoxpm', 'img2webp', 'giftext', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'vtkpython', 'plotframes', 'ppmglobe', 'tiffdither', 'sputoppm', 'x86_64-apple-darwin19-gcc-nm-9', 'mpicc', 'cmuwmtopbm', 'htop', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'gdcminfo', 'python3-config', 'ps2pdf', 'git-citool', 'tiffset', 'automake-1.16', 'rtmpsrv', 'pamflip', 'pfmtopam', 'avstopam', 'orterun', 'tgatoppm', 'gnutls-certtool', 'giftogd2', 'gdcmxml', 'imagetops', 'pbmtextps', 'pango-view', 'aomdec', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'perlthanks', 'pf2afm', 'pamcrater', 'zmqshell.py', 'delaunay', 'osage', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'gts2stl', 'ppmtoarbtxt', 'gcov-dump-9', 'ppm3d', 'hwloc-patch', 'giffix', 'pamcomp', 'h5c++', 'pfbtopfa', 'lzless', 'cistopbm', 'pamedge', 'xsubpp', 'gdcm2vtk', 'gvgen', 'fileinfo', 'pbmtoatk', 'x86_64-apple-darwin19-gcc-ar-9', 'ppmtoterm', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'perldoc', 'pnmconvol', 'pgmoil', 'gresource', 'converttops', 'flac', 'bioradtopgm', 'git-gui--askpass', 'psidtopgm', 'heif-convert', 'doxmlparser_metrics', 'pamtopfm', 'patcheck', 'pstoimg', 'ocsptool', 'sndfile-regtest', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'nginx', 'jpegtopnm', 'sndfile-concat', 'glibtool', 'gsed', 'gcc-nm-9', 'hipstopgm', 'ppmtopict', 'graphchk', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gvpr', 'gtester-report', 'murge', 'nop', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'glibtoolize', 'ppmrelief', 'ctest', 'aclocal-1.16', 'gdcmscu', 'custom.sh', 'convertsegfilestopdf', 'pamfixtrunc', 'xzless', 'pal2rgb', 'convertformat', 'exrmakepreview', 'gslp', 'opal_wrapper', 'lzcmp', 'pnmstitch', 'circo', 'pcre2-config', 'gd2topng', 'missing_codec_desc', 'ppmtoicr', 'orte-info', 'xzcat', 'pamhue', 'mrftopbm', 'gxl2gv', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'gxps', 'pbmtocmuwm', 'ncdump', 'transicc', 'exrstdattr', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'ffprobe', 'gfortran-9', 'convertfilestopdf', 'pydoc3.7', 'dvd2concat', 'ppmquant', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'pbmmake', 'pnmtotiffcmyk', 'orte-server', 'pamtoavs', 'pbmtosunicon', 'view', 'compare', 'gifbuild', 'pamsumm', 'pnmpsnr', 'aviocat', 'printafm', 'h5diff', 'ppmtopgm', 'acyclic', 'aomenc', 'gsc', 'pbmtopk', 'gml2gv', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'gtscheck', 'pamendian', 'imginfo', 'rawtopgm', 'cws2fws', 'ps2ps2', 'h5clear', 'psicc', 'pcretest', 'gslj', 'p11tool', 'ps2epsi', 'glib-gettextize', 'xzcmp', 'pamtofits', 'gouldtoppm', 'giftool', 'lzcat', 'pnmtorle', 'pamoil', 'gdcmpap3', 'pbmtoibm23xx', 'jpgicc', 'gsx', 'target_dec_fate.sh', 'sfdp', 'gc', 'ompi-clean', 'pgmmedian', 'nettle-hash', 'gdcmgendir', 'hwloc-diff', 'qt-faststart', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'h2xs', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'trasher', 'env.sh', 'ppmtopj', 'pampop9', 'sip', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'display', 'pod2man', 'graph2dot', 'rename', 'ppmtospu', 'enc2xs', 'git-cvsserver', 'ppmcolors', 'ppmtoleaf', 'conjure', 'lzdiff', 'h5redeploy', 'doxmlparser_test', 'pgmtost4', 'dijkstra', 'pnmtopnm', 'pgmedge', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'pyuic5', 'gdcm2pnm', 'pamtotiff', 'x264', 'glib-genmarshal', 'pcre-config', 'itkTestDriver', 'git-clang-format', 'pyvenv', 'ppmhist', 'dot_builtins', 'prune', 'winicontoppm', 'git-shell', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'ncxx4-config', 'podselect', 'xbmtopbm', 'gmsh', 'ppmtoyuv', 'ffescape', 'ppmtomap', 'pgmcrater', 'doxygen', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'srptool', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'stl2gts', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'gts-config', 'pnmtoplainpnm', 'x86_64-apple-darwin19-c++-9', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'fdp', 'lzmore', 'xvminitoppm', 'git-upload-pack', 'pamfile', 'danetool', 'h5fc', 'mpiexec', 'nettle-lfib-stream', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pgmtofs', 'pngtogd', 'pnmmargin', 'bcomps', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'ismindex', 'sndfile-resample', 'pbmtext', 'import', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'splain', 'gdcmviewer', 'winicontopam', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'magick', 'ccomps', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'pod2html', 'magick-script', 'asn1Parser', 'hb-view', 'nc-config', 'pnmdepth', 'pammosaicknit', 'idn2', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'transform', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'pydoc3', 'vtkParseJava-8.2', 'pamtotga', 'hb-shape', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'ncgen3', 'edgepaint', 'x86_64-apple-darwin19-g++-9', 'svgtopam', 'lzma', 'gdbm_load', 'ortecc', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'x86_64-apple-darwin19-gfortran-9', 'spottopgm', 'pamfix', 'ncgen', 'p11-kit', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'ffplay', 'pylupdate5', 'rdjpgcom', 'sdl2-config', 'ppmbrighten', 'automake', 'icontopbm', 'lzegrep', 'git', 'cpack', 'rd-curves', 'glances', 'uncoded_frame', 'raw2tiff', 'pamtris', 'ppmtoapplevol', 'gnutls-cli', 'latex2html', 'pgmtoppm', 'bisect-create', 'custom_clang_64.sh', 'ppm2tiff', 'loudnorm.rb', 'xzdiff', 'gvcolor', 'imgcmp', 'pcregrep', 'tiff2rgba', 'zipdetails', 'pamtopam', 'pamrubber', 'convert', 'pamtowinicon', 'ppmtoascii', 'texexpand', 'probetest', 'hb-subset', 'ffeval', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'fc-scan', 'bmptoppm', 'pnmtojbig'] ['uux', 'cpan', 'BuildStrings', 'loads.d', 'write', 'indent', 'bzip2recover', 'hdiutil', 'top', 'javah', 'pstruct5.18', 'tee', 'binhex5.18.pl', 'xip', 'wsimport', 'bzfgrep', 'qlmanage', 'snmptranslate', 'split', 'chsh', 'stty.pl', 'xml2man', 'iprofiler', 'man', 'lpoptions', 'tabs', 'smtpd2.7.py', 'rview', 'lsvfs', 'zgrep', 'dbiprof', 'zmore', 'corelist5.28', 'cpanp-run-perl', 'gcov', 'iptab5.28', 'svn', 'vim', 'idle2.7', 'macerror5.18', 'xjc', 'lwp-request5.18', 'bzmore', 'package-stash-conflicts', 'cancel', 'apply', 'bzgrep', 'umask', 'g++', 'libtool', 'pre-grohtml', 'colcrt', 'phpize', 'unalias', 'mp2bug', 'groff', 'mkfifo', 'toe', 'hexdump', 'spfd5.18', 'idle', 'crc325.18', 'Rez', 'cap_mkdb', 'ictool', 'cmp', 'syscallbypid.d', 'snmpset', 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'lpinfo', 'smbd', 'serverinfo', 'cvmkfs', 'postmap', 'postdrop', 'cupsenable', 'cron', 'systemstats', 'bnepd', 'kextstat', 'cvlabel', 'sendmail', 'systemkeychain', 'kcditto', 'slapcat', 'ipconfig', 'auditreduce', 'cvadmin', 'WirelessRadioManagerd', 'apachectl', 'htcacheclean'] ['mount_hfs', 'mount_apfs', 'md5', 'fsck', 'mount_udf', 'quotacheck', 'mount_cd9660', 'ping', 'fsck_exfat', 'mount_exfat', 'fsck_udf', 'shutdown', 'route', 'mount_webdav', 'fsck_hfs', 'nfsd', 'reboot', 'nfsiod', 'fsck_cs', 'fsck_apfs', 'fstyp_msdos', 'disklabel', 'mount_msdos', 'fsck_msdos', 'ifconfig', 'halt', 'mount_9p', 'mount_ntfs', 'rtsol', 'newfs_apfs', 'umount', 'fstyp', 'kextunload', 'mpioutil', 'fstyp_ntfs', 'emond', 'mount_nfs', 'newfs_udf', 'mount_ftp', 'pfctl', 'mknod', 'fstyp_udf', 'dmesg', 'mount', 'fibreconfig', 'fstyp_hfs', 'newfs_hfs', 'dynamic_pager', 'launchd', 'newfs_exfat', 'apfs_hfs_convert', 'nologin', 'mount_afp', 'mount_smbfs', 'ping6', 'kextload', 'mount_cddafs', 'mount_fdesc', 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'tex4ht', 'texluajit', 'mtxrunjit', 'uplatex', 'musixflx', 'pfarrei', 'mf', 'latexdiff-vc', 'ttfdump', 'etex', 'fig4latex', 'bibexport', 'ttf2tfm', 'latexmk', 'pmpost', 'ctwill', 'pst2pdf', 'wordcount', 'texconfig-dialog', 'luahbtex', 'lwarpmk', 'dvilj2p', 'dviinfox', 'ttf2kotexfont', 'ctanbib', 'cweave', 'bg5+latex', 'pdfatfi', 'ptex2pdf', 'e2pall', 'kpsewhich', 'upbibtex', 'texdiff', 'mathspic', 'kanji-fontmap-creator', 'kanji-config-updmap', 'asy', 'typeoutfileinfo', 'chklref', 'upmpost', 'pdflatex', 'perltex', 'mkt1font', 'cefslatex', 'cjk-gs-integrate', 'chkdvifont', 'dvitype', 'pdfjadetex', 't1lint', 'jamo-normalize', 'fmtutil-sys', 'wofm2opl', 'dviasm', 'kpsestat', 'pdfxup', 'makedtx', 'pltotf', 'mkindex', 'dvilj6', 'r-pmpost', 'xindy.mem', 'xetex', 'latex', 'ps4pdf', 'multibibliography', 'teckit_compile', 'ttf2afm', 'biburl2doi', 'getmapdl', 'uptftopl', 'contextjit', 'bib2gls', 'texplate', 'match_parens', 'mkjobtexmf', 'updvitomp', 'ps2eps', 'pkfix-helper', 'chkweb', 'arlatex', 'pn2pdf', 'pdfclose', 'xindex', 'clxelatex', 'dosepsbin', 'jadetex', 'a2ping', 'bibzbladd', 'ovf2ovp', 'mfluajit-nowin', 'mpost', 'texosquery-jre5', 'texhash', 'convbkmk', 'thumbpdf', 'pkfix', 'dvihp', 'hbf2gf', 'xindy.run', 'texcount', 'texmfstart', 'latexrevise', 'cefpdflatex', 'texluac', 'dvicopy', 'ctie', 'pdftex-quiet', 'euptex', 'pdftosrc', 'mf-nowin', 'ctangle', 'omfonts', 't1asm', 'mflua-nowin', 'cluttex', 'svn-multi', 'mk4ht', 'afm2tfm', 'pdfopen', 'fragmaster', 'ebong', 'ctanify', 'pygmentex', 'texdef', 'luatex', 'cslatex', 'synctex', 'texdirflatten', 'gbkpdflatex', 'xdvipdfmx', 'sjispdflatex', 'makeindex', 'dviluatex', 'mkofm', 'dvipdfmx', 'psbook', 'dvispc', 'csplain', 'ttftotype42', 'mft', 't1rawafm', 'fmtutil', 'ctwill-twinx', 'simpdftex', 'depythontex', 'otfinfo', 'latexindent', 'kanji-config-updmap-sys', 'extconv', 'disdvi', 'pdvitomp', 'dvipdfm', 'texliveonfly', 'allneeded', 'htcontext', 't1testpage', 'biber', 'dv2dt', 'xindy', 'pdfbook2', 't1unmac', 'xelatex', 'webquiz', 'kpsepath', 'diadia', 'makeglossaries', 'cef5pdflatex', 'autoinst', 'dvilualatex-dev', 'mkpic', 'splitindex', 'repstopdf', 'otangle', 'mfplain', 'latexfileversion', 'latex-git-log', 'inimf', 'lualatex-dev', 'latex2man', 'ps2pk', 'htxetex', 'l3build', 'ptftopl', 'ptex', 'gbklatex', 't1binary', 'bibtex', 't1dotlessj', 'mktexpk', 'detex', 'htlatex', 'odvicopy', 'dvidvi', 'extractres', 'extractbb', 'tie', 'latexdef', 'tlmgr', 'arara', 'ctan-o-mat', 'rubibtex', 'dvigif', 'gftype', 'ketcindy', 'kpseaccess', 'luacsplain', 'cachepic', 'srcredact', 'dtxgen', 'mmafm', 'pktype', 'platex-dev', 'kpsexpand', 'pktogf', 'msxlint', 't1reencode', 'vftovp', 'xhlatex', 'ht', 'mendex', 'make4ht', 'ceflatex', 'texlinks', 'pmxchords', 'mptopdf', 'afm2pl', 'mktexmf', 'lamed', 'gftopk', 'ulqda', 'dvilj4l', 'pooltype', 'bg5latex', 'bibmradd', 'aleph', 'wovf2ovp', 'pdfetex', 'dvi2tty', 'ofm2opl', 'pslatex', 'initex', 'latexpand', 'pamphletangler', 'mkgrkindex', 'mtxrun', 'epsffit', 'listings-ext.sh', 'mktexfmt', 'scor2prt', 'psnup', 'ot2kpx', 'allcm', 'pk2bm', 'dvitomp', 'texindy', 'vpl2vpl', 'luatools', 'cef5latex', 'ctwill-refsort', 'luajithbtex', 'bg5+pdflatex', 'dvisvgm', 'tex2aspc', 'bg5conv', 'deweb', 'tlcockpit', 'cfftot1', 'dviselect', 'odvitype', 'vpl2ovp', 'otp2ocp', 'latexdiff', 'dt2dv', 'bg5pdflatex', 'mf2pt1', 'psresize', 't1mac', 'epspdf', 'pythontex', 'bibtexu', 'authorindex', 'texosquery', 'tlshell', 'pdfxmltex', 'includeres', 't1ascii', 'pdflatexpicscale', 'mfluajit', 'axohelp', 'tangle', 'httex', 'texosquery-jre8', 'checkcites', 'bibtex8', 'dvi2fax', 'otftotfm', 'cefspdflatex', 'mmpfb', 'pfb2pfa', 'vpe', 'psselect', 'latex-dev', 'findhyph', 'gregorio', 'ovp2ovf', 'utf8mex', 'mflua', 'purifyeps', 'autosp', 'bundledoc', 'mllatex', 'tex4ebook', 'xdvi-xaw', 'sjislatex', 'rungs', 'dvilj4', 'ltxfileinfo', 'texconfig', 'updvitype', 'ltximg', 'updmap-user', 'dvips', 'convertgls2bib', 'latex2nemeth', 'pdfjam', 'epstopdf', 'outocp', 'pedigree', 'mkocp', 'kpsereadlink', 'ttf2pk', 'tpic2pdftex', 'kanji-config-updmap-user', 'psjoin', 'm-tx', 'uppltotf', 'texdoc', 'bbox', 'dvired', 'latex-papersize', 'makeglossaries-lite', 't4ht', 'xdvi', 'ps2frag', 'wopl2ofm', 'devnag', 'ctanupload', 'texexec', 'listbib', 'cllualatex', 'lualatex', 'pmxab', 'jfmutil', 'pdfmex', 'tftopl', 'mltex', 'amstex', 'pbibtex', 'pstops', 'optex', 'mex', 'bibdoiadd', 'updmap', 'dvipos', 'luaotfload-tool', 'epspdftk', 'updmap-sys', 'r-upmpost', 'mktextfm', 'texfot', 'checklistings', 'rpdfcrop', 'a5toa4', 'installfont-tl', 'pdfcrop', 'pdfannotextractor'] ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /Users/fire/fun2/demox/petsc-3.13.0/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /Users/fire/fun2/demox/petsc-3.13.0/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:719) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:719) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:818) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:818) Locate a functional Cxx compiler Checking for program /usr/local/opt/openssl/bin/mpicxx...not found Checking for program /usr/local/opt/curl/bin/mpicxx...not found Checking for program /usr/local/opt/sqlite/bin/mpicxx...not found Checking for program /usr/local/opt/qt/bin/mpicxx...not found Checking for program /usr/local/opt/icu4c/sbin/mpicxx...not found Checking for program /usr/local/opt/icu4c/bin/mpicxx...not found Checking for program /Users/fire/opt/itk500/bin/mpicxx...not found Checking for program /Users/fire/opt/mfem34/bin/mpicxx...not found Checking for program /Users/fire/opt/gismo/bin/mpicxx...not found Checking for program /Users/fire/opt/petsc313/bin/mpicxx...not found Checking for program /Users/fire/opt/openmpi402/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest to see if it can be run Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpicxx --version stdout: Apple clang version 11.0.3 (clang-1103.0.32.29) Target: x86_64-apple-darwin19.4.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:859) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:859) Locate a functional Cxx preprocessor Checking for program /usr/local/opt/openssl/bin/mpicxx...not found Checking for program /usr/local/opt/curl/bin/mpicxx...not found Checking for program /usr/local/opt/sqlite/bin/mpicxx...not found Checking for program /usr/local/opt/qt/bin/mpicxx...not found Checking for program /usr/local/opt/icu4c/sbin/mpicxx...not found Checking for program /usr/local/opt/icu4c/bin/mpicxx...not found Checking for program /Users/fire/opt/itk500/bin/mpicxx...not found Checking for program /Users/fire/opt/mfem34/bin/mpicxx...not found Checking for program /Users/fire/opt/gismo/bin/mpicxx...not found Checking for program /Users/fire/opt/petsc313/bin/mpicxx...not found Checking for program /Users/fire/opt/openmpi402/bin/mpicxx...found Defined make macro "CXXPP" to "mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicxx -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkFortranCompiler from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:960) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:960) Locate a functional Fortran compiler Checking for program /usr/local/opt/openssl/bin/mpif90...not found Checking for program /usr/local/opt/curl/bin/mpif90...not found Checking for program /usr/local/opt/sqlite/bin/mpif90...not found Checking for program /usr/local/opt/qt/bin/mpif90...not found Checking for program /usr/local/opt/icu4c/sbin/mpif90...not found Checking for program /usr/local/opt/icu4c/bin/mpif90...not found Checking for program /Users/fire/opt/itk500/bin/mpif90...not found Checking for program /Users/fire/opt/mfem34/bin/mpif90...not found Checking for program /Users/fire/opt/gismo/bin/mpif90...not found Checking for program /Users/fire/opt/petsc313/bin/mpif90...not found Checking for program /Users/fire/opt/openmpi402/bin/mpif90...found Defined make macro "FC" to "mpif90" Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest to see if it can be run Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpif90 --version stdout: GNU Fortran (Homebrew GCC 9.3.0) 9.3.0 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:997) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:997) Locate a functional Fortran preprocessor Checking for program /usr/local/opt/openssl/bin/mpif90...not found Checking for program /usr/local/opt/curl/bin/mpif90...not found Checking for program /usr/local/opt/sqlite/bin/mpif90...not found Checking for program /usr/local/opt/qt/bin/mpif90...not found Checking for program /usr/local/opt/icu4c/sbin/mpif90...not found Checking for program /usr/local/opt/icu4c/bin/mpif90...not found Checking for program /Users/fire/opt/itk500/bin/mpif90...not found Checking for program /Users/fire/opt/mfem34/bin/mpif90...not found Checking for program /Users/fire/opt/gismo/bin/mpif90...not found Checking for program /Users/fire/opt/petsc313/bin/mpif90...not found Checking for program /Users/fire/opt/openmpi402/bin/mpif90...found Defined make macro "FPP" to "mpif90 -E" Deleting "FPP" Checking for program /usr/local/opt/openssl/bin/mpif90...not found Checking for program /usr/local/opt/curl/bin/mpif90...not found Checking for program /usr/local/opt/sqlite/bin/mpif90...not found Checking for program /usr/local/opt/qt/bin/mpif90...not found Checking for program /usr/local/opt/icu4c/sbin/mpif90...not found Checking for program /usr/local/opt/icu4c/bin/mpif90...not found Checking for program /Users/fire/opt/itk500/bin/mpif90...not found Checking for program /Users/fire/opt/mfem34/bin/mpif90...not found Checking for program /Users/fire/opt/gismo/bin/mpif90...not found Checking for program /Users/fire/opt/petsc313/bin/mpif90...not found Checking for program /Users/fire/opt/openmpi402/bin/mpif90...found Defined make macro "FPP" to "mpif90 --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1019) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1019) Make sure fortran comment "!" works Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1150) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1150) ================================================================================ TEST checkArchiver from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1249) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1249) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V Running Executable WITHOUT threads to time it out Executing: ar -V Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/opt/openssl/bin/ar...not found Checking for program /usr/local/opt/curl/bin/ar...not found Checking for program /usr/local/opt/sqlite/bin/ar...not found Checking for program /usr/local/opt/qt/bin/ar...not found Checking for program /usr/local/opt/icu4c/sbin/ar...not found Checking for program /usr/local/opt/icu4c/bin/ar...not found Checking for program /Users/fire/opt/itk500/bin/ar...not found Checking for program /Users/fire/opt/mfem34/bin/ar...not found Checking for program /Users/fire/opt/gismo/bin/ar...not found Checking for program /Users/fire/opt/petsc313/bin/ar...not found Checking for program /Users/fire/opt/openmpi402/bin/ar...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/ar...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/ar...not found Checking for program /usr/local/opt/sqlite/bin/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/opt/openssl/bin/ranlib...not found Checking for program /usr/local/opt/curl/bin/ranlib...not found Checking for program /usr/local/opt/sqlite/bin/ranlib...not found Checking for program /usr/local/opt/qt/bin/ranlib...not found Checking for program /usr/local/opt/icu4c/sbin/ranlib...not found Checking for program /usr/local/opt/icu4c/bin/ranlib...not found Checking for program /Users/fire/opt/itk500/bin/ranlib...not found Checking for program /Users/fire/opt/mfem34/bin/ranlib...not found Checking for program /Users/fire/opt/gismo/bin/ranlib...not found Checking for program /Users/fire/opt/petsc313/bin/ranlib...not found Checking for program /Users/fire/opt/openmpi402/bin/ranlib...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/ranlib...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/ranlib...not found Checking for program /usr/local/opt/sqlite/bin/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/libconf1.a /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -L/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1363) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1363) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking shared linker mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Checking for program /usr/local/opt/openssl/bin/mpicc...not found Checking for program /usr/local/opt/curl/bin/mpicc...not found Checking for program /usr/local/opt/sqlite/bin/mpicc...not found Checking for program /usr/local/opt/qt/bin/mpicc...not found Checking for program /usr/local/opt/icu4c/sbin/mpicc...not found Checking for program /usr/local/opt/icu4c/bin/mpicc...not found Checking for program /Users/fire/opt/itk500/bin/mpicc...not found Checking for program /Users/fire/opt/mfem34/bin/mpicc...not found Checking for program /Users/fire/opt/gismo/bin/mpicc...not found Checking for program /Users/fire/opt/petsc313/bin/mpicc...not found Checking for program /Users/fire/opt/openmpi402/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -dynamiclib -single_module /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid C linker flag -dynamiclib -single_module Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -undefined dynamic_lookup /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid C linker flag -undefined dynamic_lookup Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -multiply_defined suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid C linker flag -multiply_defined suppress Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -no_compact_unwind /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: clang: error: unknown argument: '-no_compact_unwind' Rejecting linker flag -no_compact_unwind due to nonzero status from link Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -L/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -lconftest Using shared linker mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST checkLinkerMac from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1437) TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1437) Tests some Apple Mac specific linker flags Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined,suppress Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined -Wl,suppress Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid C linker flag -Wl,-commons,use_dylibs Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid C linker flag -Wl,-search_paths_first Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid C linker flag -Wl,-no_compact_unwind Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined,suppress Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-commons,use_dylibs Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-search_paths_first Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-no_compact_unwind Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined,suppress Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined -Wl,suppress Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid FC linker flag -Wl,-commons,use_dylibs Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid FC linker flag -Wl,-search_paths_first Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid FC linker flag -Wl,-no_compact_unwind Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST checkPIC from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1097) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying FC for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Accepted FC PIC code without compiler flag ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1475) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1475) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: mpicc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-rpath,/Volumes/data3/fun2/demox/petsc-3.13.0 -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/Volumes/data3/fun2/demox/petsc-3.13.0 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-rpath,/Volumes/data3/fun2/demox/petsc-3.13.0 -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/Volumes/data3/fun2/demox/petsc-3.13.0 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: mpicc -V Trying FC linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-rpath,/Volumes/data3/fun2/demox/petsc-3.13.0 -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/Volumes/data3/fun2/demox/petsc-3.13.0 ================================================================================ TEST checkLibC from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1510) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1510) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1556) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1556) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking dynamic linker mpicc using flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] Checking for program /usr/local/opt/openssl/bin/mpicc...not found Checking for program /usr/local/opt/curl/bin/mpicc...not found Checking for program /usr/local/opt/sqlite/bin/mpicc...not found Checking for program /usr/local/opt/qt/bin/mpicc...not found Checking for program /usr/local/opt/icu4c/sbin/mpicc...not found Checking for program /usr/local/opt/icu4c/bin/mpicc...not found Checking for program /Users/fire/opt/itk500/bin/mpicc...not found Checking for program /Users/fire/opt/mfem34/bin/mpicc...not found Checking for program /Users/fire/opt/gismo/bin/mpicc...not found Checking for program /Users/fire/opt/petsc313/bin/mpicc...not found Checking for program /Users/fire/opt/openmpi402/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -ldl Valid C linker flag -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] and library extension dylib ================================================================================ TEST output from config.setCompilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/setCompilers.py:1605) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1605) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "mpif90" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" child config.setCompilers 5.397946 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/sharedLibraries.py:52) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:52) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(2).dylib" Defined make macro "SL_LINKER_FUNCTION" to "-dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/sharedLibraries.py:94) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:94) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/sharedLibraries.py:100) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:100) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.007988 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.000531 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "C_VERSION" to "Apple clang version 11.0.3 (clang-1103.0.32.29)" Defined make macro "MPICC_SHOW" to "gcc -I/Users/fire/opt/openmpi402/include -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi" Trying C compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -fno-stack-check Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fno-stack-check Trying C compiler flag -mfp16-format=ieee Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to clang: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -Qunused-arguments Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Qunused-arguments Trying C compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Defined make macro "MPICC_SHOW" to "gcc -I/Users/fire/opt/openmpi402/include -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi" Trying C compiler flag -g3 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Defined make macro "Cxx_VERSION" to "Apple clang version 11.0.3 (clang-1103.0.32.29)" Defined make macro "MPICXX_SHOW" to "g++ -I/Users/fire/opt/openmpi402/include -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi" Trying Cxx compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fno-stack-check Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fno-stack-check Trying Cxx compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Defined make macro "MPICXX_SHOW" to "g++ -I/Users/fire/opt/openmpi402/include -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi" Trying Cxx compiler flag -g Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Defined make macro "FC_VERSION" to "GNU Fortran (Homebrew GCC 9.3.0) 9.3.0" Defined make macro "MPIFC_SHOW" to "gfortran -I/Users/fire/opt/openmpi402/include -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/fire/opt/openmpi402/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" Trying FC compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -ffree-line-length-0 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Defined make macro "MPIFC_SHOW" to "gfortran -I/Users/fire/opt/openmpi402/include -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/fire/opt/openmpi402/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" Trying FC compiler flag -g Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -g child config.compilerFlags 1.741431 Running Executable WITHOUT threads to time it out Executing: mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt ================================================================================ TEST checkRestrict from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: mpicc -V All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:405) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:405) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:120) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:120) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:416) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:416) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:214) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:214) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:1363) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1363) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -MMD -MP /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -MMD -MP /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ================================================================================ TEST checkC99Flag from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:1408) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1408) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: Defined "HAVE_C99" to "1" Running Executable WITHOUT threads to time it out Executing: mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt ================================================================================ TEST checkRestrict from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: mpicc -V Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:435) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:435) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:135) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:135) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:547) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:547) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::_DeallocateCaller::__do_call(void*) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_call_unexpected", referenced from: std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::ostreambuf_iterator >::ostreambuf_iterator(std::__1::basic_ostream >&) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::vector >::~vector() in confc.o std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o std::__1::ostreambuf_iterator >::ostreambuf_iterator(std::__1::basic_ostream >&) in confc.o ... ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: mpicc --help | head -n 500 Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/confc.o -lc++ -ldl compilers: C++ requires -lc++ to link with C compiler Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/confc.o -lc++ -ldl C++ libraries are not needed when using FC linker ================================================================================ TEST checkCxxDialect from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:463) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:463) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:7:32: error: unknown type name 'constexpr' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:7:42: warning: variable templates are a C++14 extension [-Wc++14-extensions] template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:7:43: error: expected ';' at end of declaration template constexpr T Cubed( T x ) { return x*x*x; } ^ ; /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:7:51: error: unknown type name 'T' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:7:44: error: C++ requires a type specifier for all declarations template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:18:11: error: unknown type name 'constexpr' constexpr std::complex I(0.0,1.0); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:18:26: error: template specialization requires 'template<>' constexpr std::complex I(0.0,1.0); ^ ~~~~~~~~ template<> /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:18:26: error: no variable template matches specialization /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:18:41: error: expected ';' at end of declaration constexpr std::complex I(0.0,1.0); ^ ; /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:19:11: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto lambda = [](auto x, auto y) {return x + y;}; ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:19:25: error: expected expression auto lambda = [](auto x, auto y) {return x + y;}; ^ 2 warnings and 9 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:7:32: error: unknown type name 'constexpr' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:7:42: warning: variable templates are a C++14 extension [-Wc++14-extensions] template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:7:43: error: expected ';' at end of declaration template constexpr T Cubed( T x ) { return x*x*x; } ^ ; /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:7:51: error: unknown type name 'T' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:7:44: error: C++ requires a type specifier for all declarations template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:18:11: error: unknown type name 'constexpr' constexpr std::complex I(0.0,1.0); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:18:26: error: template specialization requires 'template<>' constexpr std::complex I(0.0,1.0); ^ ~~~~~~~~ template<> /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:18:26: error: no variable template matches specialization /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:18:41: error: expected ';' at end of declaration constexpr std::complex I(0.0,1.0); ^ ; /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:19:11: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto lambda = [](auto x, auto y) {return x + y;}; ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:19:25: error: expected expression auto lambda = [](auto x, auto y) {return x + y;}; ^ 2 warnings and 9 errors generated. PETSc Error: No output file produced checkCxxDialect: checking CXX14 with flag: -std=c++14 Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc:18:42: warning: unused variable 'I' [-Wunused-variable] constexpr std::complex I(0.0,1.0); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -V ================================================================================ TEST checkFortranNameMangling from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:854) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:854) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/confc.o -lc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Running Executable WITHOUT threads to time it out Executing: mpif90 --version stdout: GNU Fortran (Homebrew GCC 9.3.0) 9.3.0 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Defined "FORTRAN_CHARLEN_T" to "size_t" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:892) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:892) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _MAIN__ in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status ================================================================================ TEST checkFortranLibraries from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:902) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:902) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__gfortran_st_write", referenced from: _asub_ in confc.o "__gfortran_st_write_done", referenced from: _asub_ in confc.o "__gfortran_transfer_character_write", referenced from: _asub_ in confc.o "_mpi_allreduce_", referenced from: _asub_ in confc.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -lc++ -ldl Possible ERROR while running linker: stderr: Driving: /usr/local/bin/gfortran -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -lc++ -ldl -I/Users/fire/opt/openmpi402/include -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/fire/opt/openmpi402/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -mmacosx-version-min=10.15.0 -asm_macosx_version_min=10.15 -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=/usr/local/bin/gfortran COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/lto-wrapper Target: x86_64-apple-darwin19 Configured with: ../configure --build=x86_64-apple-darwin19 --prefix=/usr/local/Cellar/gcc/9.3.0 --libdir=/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 --disable-nls --enable-checking=release --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-9 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --with-pkgversion='Homebrew GCC 9.3.0' --with-bugurl=https://github.com/Homebrew/homebrew-core/issues --disable-multilib --with-native-system-header-dir=/usr/include --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk Thread model: posix gcc version 9.3.0 (Homebrew GCC 9.3.0) Reading specs from /usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-I' '/Users/fire/opt/openmpi402/include' '-I' '/Users/fire/opt/openmpi402/lib' '-L/usr/local/Cellar/hwloc/2.2.0/lib' '-L/usr/local/Cellar/libevent/2.1.11_1/lib' '-L/Users/fire/opt/openmpi402/lib' '-mmacosx-version-min=10.15.0' '-asm_macosx_version_min=10.15' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/:/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/ LIBRARY_PATH=/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/../../../ COLLECT_GCC_OPTIONS='-o' '/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-I' '/Users/fire/opt/openmpi402/include' '-I' '/Users/fire/opt/openmpi402/lib' '-L/usr/local/Cellar/hwloc/2.2.0/lib' '-L/usr/local/Cellar/libevent/2.1.11_1/lib' '-L/Users/fire/opt/openmpi402/lib' '-mmacosx-version-min=10.15.0' '-asm_macosx_version_min=10.15' '-shared-libgcc' '-mtune=core2' /usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/collect2 -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.15.0 -weak_reference_mismatches non-weak -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -lc++ -flat_namespace -commons use_dylibs -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v -idsym collect2 version 9.3.0 /usr/bin/ld -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.15.0 -weak_reference_mismatches non-weak -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -lc++ -flat_namespace -commons use_dylibs -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v @(#)PROGRAM:ld PROJECT:ld64-556.5 BUILD 19:04:29 Mar 6 2020 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em Library search paths: /usr/local/Cellar/hwloc/2.2.0/lib /usr/local/Cellar/libevent/2.1.11_1/lib /Users/fire/opt/openmpi402/lib /usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 /usr/local/Cellar/gcc/9.3.0/lib/gcc/9 /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib Framework search paths: /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/ compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg /usr/local/bin/gfortran compilers: Unknown arg /usr/local/bin/gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest compilers: Unknown arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wl,-multiply_defined,suppress compilers: Unknown arg -Wl,-multiply_defined,suppress compilers: Checking arg -Wl,-multiply_defined compilers: Unknown arg -Wl,-multiply_defined compilers: Checking arg -Wl,suppress compilers: Unknown arg -Wl,suppress compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -Wl,-search_paths_first compilers: Unknown arg -Wl,-search_paths_first compilers: Checking arg -Wl,-no_compact_unwind compilers: Unknown arg -Wl,-no_compact_unwind compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o compilers: Unknown arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Found library: -lc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -I/Users/fire/opt/openmpi402/include compilers: Found include directory: /Users/fire/opt/openmpi402/include compilers: Checking arg -Wl,-flat_namespace compilers: Unknown arg -Wl,-flat_namespace compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -I/Users/fire/opt/openmpi402/lib compilers: Found include directory: /Users/fire/opt/openmpi402/lib compilers: Checking arg -L/usr/local/Cellar/hwloc/2.2.0/lib compilers: Found library directory: -L/usr/local/Cellar/hwloc/2.2.0/lib compilers: Checking arg -L/usr/local/Cellar/libevent/2.1.11_1/lib compilers: Found library directory: -L/usr/local/Cellar/libevent/2.1.11_1/lib compilers: Checking arg -L/Users/fire/opt/openmpi402/lib compilers: Found library directory: -L/Users/fire/opt/openmpi402/lib compilers: Checking arg -lmpi_usempif08 compilers: Found library: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Found library: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Found library: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -mmacosx-version-min=10.15.0 compilers: Unknown arg -mmacosx-version-min=10.15.0 compilers: Checking arg -asm_macosx_version_min=10.15 compilers: Unknown arg -asm_macosx_version_min=10.15 compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/usr/local/bin/gfortran compilers: Unknown arg COLLECT_GCC=/usr/local/bin/gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin19 compilers: Unknown arg x86_64-apple-darwin19 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --build=x86_64-apple-darwin19 compilers: Unknown arg --build=x86_64-apple-darwin19 compilers: Checking arg --prefix=/usr/local/Cellar/gcc/9.3.0 compilers: Unknown arg --prefix=/usr/local/Cellar/gcc/9.3.0 compilers: Checking arg --libdir=/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 compilers: Unknown arg --libdir=/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 compilers: Checking arg --disable-nls compilers: Unknown arg --disable-nls compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --enable-languages=c,c++,objc,obj-c++,fortran compilers: Unknown arg --enable-languages=c,c++,objc,obj-c++,fortran compilers: Checking arg --program-suffix=-9 compilers: Unknown arg --program-suffix=-9 compilers: Checking arg --with-gmp=/usr/local/opt/gmp compilers: Unknown arg --with-gmp=/usr/local/opt/gmp compilers: Checking arg --with-mpfr=/usr/local/opt/mpfr compilers: Unknown arg --with-mpfr=/usr/local/opt/mpfr compilers: Checking arg --with-mpc=/usr/local/opt/libmpc compilers: Unknown arg --with-mpc=/usr/local/opt/libmpc compilers: Checking arg --with-isl=/usr/local/opt/isl compilers: Unknown arg --with-isl=/usr/local/opt/isl compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=https://github.com/Homebrew/homebrew-core/issues compilers: Unknown arg --with-bugurl=https://github.com/Homebrew/homebrew-core/issues compilers: Checking arg --disable-multilib compilers: Unknown arg --disable-multilib compilers: Checking arg --with-native-system-header-dir=/usr/include compilers: Unknown arg --with-native-system-header-dir=/usr/include compilers: Checking arg --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk compilers: Unknown arg --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 9.3.0 compilers: Unknown arg 9.3.0 compilers: Checking arg (Homebrew compilers: Unknown arg (Homebrew compilers: Checking arg GCC compilers: Unknown arg GCC compilers: Checking arg 9.3.0) compilers: Unknown arg 9.3.0) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/../../../libgfortran.spec compilers: Unknown arg /usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/../../../libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/:/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/ compilers: Skipping arg COMPILER_PATH=/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/:/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/ compilers: Checking arg LIBRARY_PATH=/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/../../../ compilers: Skipping arg LIBRARY_PATH=/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/:/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/../../../ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/collect2 compilers: Unknown arg /usr/local/Cellar/gcc/9.3.0/libexec/gcc/x86_64-apple-darwin19/9.3.0/collect2 compilers: Checking arg -syslibroot compilers: Unknown arg -syslibroot compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.15.0 compilers: Unknown arg 10.15.0 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest compilers: Unknown arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest compilers: Checking arg -L/usr/local/Cellar/hwloc/2.2.0/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/hwloc/2.2.0/lib compilers: Checking arg -L/usr/local/Cellar/libevent/2.1.11_1/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/libevent/2.1.11_1/lib compilers: Checking arg -L/Users/fire/opt/openmpi402/lib compilers: Already in lflags so skipping: -L/Users/fire/opt/openmpi402/lib compilers: Checking arg -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 compilers: Found library directory: -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 compilers: Checking arg -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/../../.. compilers: Found library directory: -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o compilers: Unknown arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Already in lflags: -lc++ compilers: Checking arg -flat_namespace compilers: Unknown arg -flat_namespace compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -lmpi_usempif08 compilers: Already in lflags: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Already in lflags: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Already in lflags: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -idsym compilers: Unknown arg -idsym compilers: Checking arg collect2 compilers: Unknown arg collect2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 9.3.0 compilers: Unknown arg 9.3.0 compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg -syslibroot compilers: Unknown arg -syslibroot compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/ compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.15.0 compilers: Unknown arg 10.15.0 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest compilers: Unknown arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest compilers: Checking arg -L/usr/local/Cellar/hwloc/2.2.0/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/hwloc/2.2.0/lib compilers: Checking arg -L/usr/local/Cellar/libevent/2.1.11_1/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/libevent/2.1.11_1/lib compilers: Checking arg -L/Users/fire/opt/openmpi402/lib compilers: Already in lflags so skipping: -L/Users/fire/opt/openmpi402/lib compilers: Checking arg -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 compilers: Checking arg -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0/../../.. compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o compilers: Unknown arg /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Already in lflags: -lc++ compilers: Checking arg -flat_namespace compilers: Unknown arg -flat_namespace compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -lmpi_usempif08 compilers: Already in lflags: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Already in lflags: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Already in lflags: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgfortran compilers: Already in lflags: -lgfortran compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Already in lflags: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg @(#)PROGRAM:ld compilers: Unknown arg @(#)PROGRAM:ld compilers: Checking arg PROJECT:ld64-556.5 compilers: Unknown arg PROJECT:ld64-556.5 compilers: Checking arg BUILD compilers: Unknown arg BUILD compilers: Checking arg 19:04:29 compilers: Unknown arg 19:04:29 compilers: Checking arg Mar compilers: Unknown arg Mar compilers: Checking arg 6 compilers: Unknown arg 6 compilers: Checking arg 2020 compilers: Unknown arg 2020 compilers: Checking arg configured compilers: Unknown arg configured compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg support compilers: Unknown arg support compilers: Checking arg archs: compilers: Unknown arg archs: compilers: Checking arg armv6 compilers: Unknown arg armv6 compilers: Checking arg armv7 compilers: Unknown arg armv7 compilers: Checking arg armv7s compilers: Unknown arg armv7s compilers: Checking arg arm64 compilers: Unknown arg arm64 compilers: Checking arg arm64e compilers: Unknown arg arm64e compilers: Checking arg arm64_32 compilers: Unknown arg arm64_32 compilers: Checking arg i386 compilers: Unknown arg i386 compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg x86_64h compilers: Unknown arg x86_64h compilers: Checking arg armv6m compilers: Unknown arg armv6m compilers: Checking arg armv7k compilers: Unknown arg armv7k compilers: Checking arg armv7m compilers: Unknown arg armv7m compilers: Checking arg armv7em compilers: Unknown arg armv7em compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /usr/local/Cellar/hwloc/2.2.0/lib compilers: Unknown arg /usr/local/Cellar/hwloc/2.2.0/lib compilers: Checking arg /usr/local/Cellar/libevent/2.1.11_1/lib compilers: Unknown arg /usr/local/Cellar/libevent/2.1.11_1/lib compilers: Checking arg /Users/fire/opt/openmpi402/lib compilers: Unknown arg /Users/fire/opt/openmpi402/lib compilers: Checking arg /usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 compilers: Unknown arg /usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 compilers: Checking arg /usr/local/Cellar/gcc/9.3.0/lib/gcc/9 compilers: Unknown arg /usr/local/Cellar/gcc/9.3.0/lib/gcc/9 compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/lib compilers: Checking arg Framework compilers: Unknown arg Framework compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/ compilers: Libraries needed to link Fortran code with the C linker: ['-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest to see if it can be run Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest to see if it can be run Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:1328) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1328) Check that Fortran can link C++ libraries Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/cxxobj.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers/confc.o -lc++ -ldl compilers: Fortran can link C++ functions ================================================================================ TEST setupFrameworkCompilers from config.compilers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilers.py:1473) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1473) child config.compilers 5.203456 ================================================================================ TEST configureClosure from config.utilities.closure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure/conftest.c:6:7: warning: unused variable 'closure' [-Wunused-variable] int (^closure)(int);; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure/conftest.o -lc++ -ldl Defined "HAVE_CLOSURE" to "1" child config.utilities.closure 0.113646 ================================================================================ TEST checkFortranTypeSizes from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:56) TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90:2:21: 2 | real*8 variable | 1 Warning: Unused variable 'variable' declared at (1) [-Wunused-variable] Source: program main real*8 variable end ================================================================================ TEST checkFortranPreprocessor from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:73) TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end compilers: Fortran uses preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:96) TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -DTesting /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortran90 from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:146) TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90:3:43: 3 | REAL(KIND=SELECTED_REAL_KIND(10)) d | 1 Warning: Unused variable 'd' declared at (1) [-Wunused-variable] Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -lc++ -ldl Fortran compiler supports F90 ================================================================================ TEST checkFortran90FreeForm from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:162) TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -lc++ -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ================================================================================ TEST checkFortran2003 from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:176) TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90:21:0: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | Warning: 'carray.data' may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90:21:0: Warning: 'carray.offset' may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90:21:0: Warning: 'carray.dim[0].lbound' may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90:21:0: Warning: 'carray.dim[0].ubound' may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90:21:0: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | Warning: 'carray.dim[0].stride' may be used uninitialized in this function [-Wmaybe-uninitialized] Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -lc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ================================================================================ TEST checkFortran90Array from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:211) TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/fooobj.o -lc++ -ldl Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest to see if it can be run Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest stdout: arrays [0x7ffeec99f670 0x7ffeec99f670 0x7ffeec99f670] arrays [0x7ffeec99f610 0x7ffeec99f5b0 0x7ffeec99f610] pointers do not match! [0x130a8 0x7ffeec99f670] [0x0] ERROR while running executable: Could not execute "['/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest']": arrays [0x7ffeec99f670 0x7ffeec99f670 0x7ffeec99f670] arrays [0x7ffeec99f610 0x7ffeec99f5b0 0x7ffeec99f610] pointers do not match! [0x130a8 0x7ffeec99f670] [0x0] compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortran90AssumedType from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:298) TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Running Executable WITHOUT threads to time it out Executing: mpif90 -qversion ================================================================================ TEST checkFortranModuleInclude from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:303) TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/configtest.o -lc++ -ldl compilers: Fortran module include flag -I found ================================================================================ TEST checkFortranModuleOutput from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:369) TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -module /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-module' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -module:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-module:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -fmod=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option '-fmod=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -J/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found ================================================================================ TEST checkFortranTypeStar from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:135) TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ================================================================================ TEST checkFortranTypeInitialize from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:125) TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ================================================================================ TEST configureFortranFlush from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:116) TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran/conftest.o -lc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ================================================================================ TEST checkDependencyGenerationFlag from config.compilersFortran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/compilersFortran.py:414) TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -MMD -MP /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.F90 Successful compile: Source: program main end child config.compilersFortran 1.355029 ================================================================================ TEST checkStdC from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.o -lc++ -ldl Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest to see if it can be run Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:8:8: warning: if statement has empty body [-Wempty-body] if (pi); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:8:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found#include ^~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found#include ^~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found#include ^~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found#include ^~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~1 error generated.: ================================================================================ TEST checkRecursiveMacros from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 3.872288 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest.c:4:60: error: use of undeclared identifier '_SC_LEVEL1_DCACHE_LINESIZE'; did you mean 'getconf_LEVEL1_DCACHE_LINESIZE'? long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^~~~~~~~~~~~~~~~~~~~~~~~~~ getconf_LEVEL1_DCACHE_LINESIZE /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest.c:4:6: note: 'getconf_LEVEL1_DCACHE_LINESIZE' declared here long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest.o -lc++ -ldl Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.295248 ================================================================================ TEST check_struct_sigaction from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:43) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:43) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:49) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:49) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/i386/_types.h:46:33: note: '__int64_t' declared here typedef long long __int64_t; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:55) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:55) Checks for types associated with sizes, such as size_t. Checking for type: size_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:65) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:65) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:60) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:60) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:71) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:71) Checks for pid_t, and defines it if necessary Checking for type: pid_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:75) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:75) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:82) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:82) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -lc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:93) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:93) Check for complex numbers in namespace std Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.cc:6:22: warning: unused variable 'x' [-Wunused-variable] std::complex x; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -lc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkConst from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:104) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:104) Checks for working const, and if not found defines it to empty string Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:24:16: warning: if statement has empty body [-Wempty-body] if (zero.x); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:24:16: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:25:14: warning: if statement has empty body [-Wempty-body] if (x[0]); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:25:14: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:31:14: warning: if statement has empty body [-Wempty-body] if (*s); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:31:14: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:52:15: warning: if statement has empty body [-Wempty-body] if (foo); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:52:15: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:46:20: warning: variable 'b' is uninitialized when used here [-Wuninitialized] struct s *b; b->j = 5; ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:46:18: note: initialize the variable 'b' to silence this warning struct s *b; b->j = 5; ^ = 0 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:30:8: warning: variable 't' is uninitialized when used here [-Wuninitialized] *t++ = 0; ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:27:14: note: initialize the variable 't' to silence this warning char *t; ^ = 0 6 warnings generated. Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ================================================================================ TEST checkSizeof from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkVisibility from config.types(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/types.py:194) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:194) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" child config.types 1.661700 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.000587 ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkMath from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl CheckMath: using math library [] ================================================================================ TEST checkMathErf from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathLgamma from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:301) TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:314) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:322) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:331) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:347) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -ldl -lc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" child config.libraries 1.286252 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [ADIOI_BGL_Open] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.214136 child config.atomics 0.000012 ================================================================================ TEST checkSysinfo from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkVPrintf from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:6:25: error: assigning to 'int' from incompatible type 'void' int ierr; void *p; ierr = free(p); return 0; ^ ~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen drand48 socket popen getrusage _mkdir time stricmp] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:16:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:16:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:19:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:19:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:44:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:44:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [rand getdomainname realpath dlsym bzero getwd uname usleep dlclose gethostname clock] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:17:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:17:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char getwd(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Checking for functions [dlerror fork getpagesize gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:18:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:18:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); char fork(); char getpagesize(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_DLERROR" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [snprintf] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:13:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c:13:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_pipe] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_lseek] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [sleep] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [lseek] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [sbreak] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [memalign] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [getcwd] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [PXFGETARG] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_mkdir] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [stricmp] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkMmap from config.functions(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 3.202412 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize/conftest.c:38:18: warning: implicit declaration of function 'getpagesize' is invalid in C99 [-Wimplicit-function-declaration] f2 = getpagesize() * ((double)(temp2.ru_maxrss-temp1.ru_maxrss))/(4.0*ARRAYSIZE); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize/conftest.c:58:2: error: expected '}' } ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize/conftest.c:12:12: note: to match this '{' int main() { ^ 1 warning and 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link output from getrusage() child config.utilities.getResidentSetSize 0.065178 ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.124797 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: 'sysctl.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.c:7:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t mset; ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.c:8:1: warning: implicit declaration of function 'CPU_ZERO' is invalid in C99 [-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros/conftest.c:8:11: error: use of undeclared identifier 'mset' CPU_ZERO(&mset);; ^ 1 warning and 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } child config.utilities.featureTestMacros 0.208631 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c:21:7: warning: incompatible pointer types initializing 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an expression of type 'int (char *, int)' [-Wincompatible-pointer-types] int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.cc:21:7: error: cannot initialize a variable of type 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an lvalue of type 'int (char *, int)': type mismatch at 2nd parameter ('size_t' (aka 'unsigned long') vs 'int') int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -lc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing/conftest.o -lc++ -ldl child config.utilities.missing 1.630811 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found#include ^~~~~~~~~~1 error generated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found#include ^~~~~~~~~1 error generated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found#include ^~~~~~~~~~~~~~~~~1 error generated.: child config.utilities.FPTrap 0.128374 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNORMAL" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNAN" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:4:10: fatal error: 'quadmath.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 0.391248 ================================================================================ TEST configureMkdir from config.programs(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/opt/openssl/bin/mkdir...not found Checking for program /usr/local/opt/curl/bin/mkdir...not found Checking for program /usr/local/opt/sqlite/bin/mkdir...not found Checking for program /usr/local/opt/qt/bin/mkdir...not found Checking for program /usr/local/opt/icu4c/sbin/mkdir...not found Checking for program /usr/local/opt/icu4c/bin/mkdir...not found Checking for program /Users/fire/opt/itk500/bin/mkdir...not found Checking for program /Users/fire/opt/mfem34/bin/mkdir...not found Checking for program /Users/fire/opt/gismo/bin/mkdir...not found Checking for program /Users/fire/opt/petsc313/bin/mkdir...not found Checking for program /Users/fire/opt/openmpi402/bin/mkdir...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/mkdir...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/mkdir...not found Checking for program /usr/local/opt/sqlite/bin/mkdir...not found Checking for program /usr/local/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Running Executable WITHOUT threads to time it out Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/opt/openssl/bin/autoreconf...not found Checking for program /usr/local/opt/curl/bin/autoreconf...not found Checking for program /usr/local/opt/sqlite/bin/autoreconf...not found Checking for program /usr/local/opt/qt/bin/autoreconf...not found Checking for program /usr/local/opt/icu4c/sbin/autoreconf...not found Checking for program /usr/local/opt/icu4c/bin/autoreconf...not found Checking for program /Users/fire/opt/itk500/bin/autoreconf...not found Checking for program /Users/fire/opt/mfem34/bin/autoreconf...not found Checking for program /Users/fire/opt/gismo/bin/autoreconf...not found Checking for program /Users/fire/opt/petsc313/bin/autoreconf...not found Checking for program /Users/fire/opt/openmpi402/bin/autoreconf...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/autoreconf...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/autoreconf...not found Checking for program /usr/local/opt/sqlite/bin/autoreconf...not found Checking for program /usr/local/sbin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...found All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.programs Running Executable WITHOUT threads to time it out Executing: ['/usr/local/bin/autoreconf'] autoreconf test successful! Checking for program /usr/local/opt/openssl/bin/libtoolize...not found Checking for program /usr/local/opt/curl/bin/libtoolize...not found Checking for program /usr/local/opt/sqlite/bin/libtoolize...not found Checking for program /usr/local/opt/qt/bin/libtoolize...not found Checking for program /usr/local/opt/icu4c/sbin/libtoolize...not found Checking for program /usr/local/opt/icu4c/bin/libtoolize...not found Checking for program /Users/fire/opt/itk500/bin/libtoolize...not found Checking for program /Users/fire/opt/mfem34/bin/libtoolize...not found Checking for program /Users/fire/opt/gismo/bin/libtoolize...not found Checking for program /Users/fire/opt/petsc313/bin/libtoolize...not found Checking for program /Users/fire/opt/openmpi402/bin/libtoolize...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/libtoolize...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/libtoolize...not found Checking for program /usr/local/opt/sqlite/bin/libtoolize...not found Checking for program /usr/local/sbin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...not found Checking for program /bin/libtoolize...not found Checking for program /usr/sbin/libtoolize...not found Checking for program /sbin/libtoolize...not found Checking for program /Library/TeX/texbin/libtoolize...not found Checking for program /opt/X11/bin/libtoolize...not found Checking for program /Users/fire/fun2/demox/petsc-3.13.0/lib/petsc/bin/win32fe/libtoolize...not found Unable to find programs ['libtoolize'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['c_rehash', 'openssl'] Warning accessing /usr/local/opt/curl/bin gives errors: [Errno 2] No such file or directory: '/usr/local/opt/curl/bin' ['sqlite3'] ['qmake', 'qmlplugindump', 'tracegen', 'canbusutil', 'macdeployqt', 'rcc', 'qmlprofiler', 'lrelease-pro', 'balsam', 'qmltestrunner', 'lupdate', 'meshdebug', 'lrelease', 'uic', 'macchangeqt', 'lupdate-pro', 'fixqt4headers.pl', 'xmlpatterns', 'qdbusxml2cpp', 'qmlmin', 'qmlimportscanner', 'qtattributionsscanner', 'xmlpatternsvalidator', 'repc', 'qwebengine_convert_dict', 'qdistancefieldgenerator', 'qtpaths', 'lconvert', 'qmlcachegen', 'qmllint', 'qcollectiongenerator', 'qlalr', 'qscxmlc', 'qvkgen', 'qgltf', 'qdbus', 'qhelpgenerator', 'qmleasing', 'qdbuscpp2xml', 'lprodump', 'qtdiag', 'syncqt.pl', 'qtplugininfo', 'qmlscene', 'qmlpreview', 'moc'] ['gennorm2', 'escapesrc', 'gensprep', 'icupkg', 'gencmn', 'genccode'] ['makeconv', 'gencnval', 'icu-config', 'gencfu', 'icuinfo', 'gendict', 'genrb', 'pkgdata', 'genbrk', 'derb', 'uconv'] Warning accessing /Users/fire/opt/itk500/bin gives errors: [Errno 2] No such file or directory: '/Users/fire/opt/itk500/bin' Warning accessing /Users/fire/opt/mfem34/bin gives errors: [Errno 2] No such file or directory: '/Users/fire/opt/mfem34/bin' Warning accessing /Users/fire/opt/gismo/bin gives errors: [Errno 2] No such file or directory: '/Users/fire/opt/gismo/bin' ['cdfdiff', 'nc-config', 'nccopy', 'ncdump', 'ncgen', 'ncgen3', 'ncmpidiff', 'ncmpidump', 'ncmpigen', 'ncoffsets', 'ncvalidator', 'pnetcdf-config', 'pnetcdf_version'] ['aggregate_profile.pl', 'mpic++', 'mpicc', 'mpicxx', 'mpiexec', 'mpif77', 'mpif90', 'mpifort', 'mpirun', 'ompi-clean', 'ompi-server', 'ompi_info', 'opal_wrapper', 'orte-clean', 'orte-info', 'orte-server', 'ortecc', 'orted', 'orterun', 'profile2mat.pl'] ['tar'] ['sed'] ['sqlite3'] ['unbound-anchor', 'unbound-checkconf', 'unbound-control', 'unbound', 'unbound-control-setup', 'unbound-host', '.keepme'] ['ndmetis', 'cpan', 'ppmtouil', 'rubberband', 'pip3.7', 'lzmainfo', 'vtkWrapHierarchy-8.2', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'gtar', 'ppmtoyuvsplit', 'pbmtonokia', 'dot2gxl', 'leaftoppm', 'dvipdf', 'rview', 'event_rpcgen.py', 'pnminvert', 'lame', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'vim', 'gif2rgb', 'gen-enc-table', 'pgmslice', 'pktdumper', 'ppmshadow', 'anytopnm', 'tree', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'c++-9', 'pbmtoescp2', 'ppmcie', 'x86_64-apple-darwin19-gcc-9', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'gmake', 'webpng', 'identify', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'ffhash', 'palmtopnm', 'pamseq', 'pcre2grep', 'convertsegfilestops', 'mpif90', 'fitstopnm', 'gifclrmp', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'montage', 'ppmmix', 'gdcmtar', 'wget', 'ffmpeg', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'nf-config', 'pgmmake', 'pamaltsat', 'pbmtog3', 'instmodsh', 'cluster', 'pbmtomrf', 'animate', 'git-gui', 'pamtilt', 'MagickCore-config', 'sexp-conv', 'MagickWand-config', 'perlivp', 'ps2ps', 'pbmtodjvurle', 'gv2gml', 'h5copy', 'vi', 'gdcmanon', 'clean-diff', 'x86_64-apple-darwin19-gcc-9.3.0', 'xzdec', 'luac5.3', 'pod2usage', 'tiffsplit', 'pambayer', 'gxl2dot', 'ppmforge', 'corelist', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'gts2oogl', 'mtvtoppm', 'pamstretch', 'vtkWrapPythonInit-8.2', 'h52gif', 'gdcmraw', 'fax2tiff', 'tred', 'vtkWrapJava-8.2', 'pamfunc', 'pcdovtoppm', 'linkicc', 'fourcc2pixfmt', 'git-receive-pack', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'rtmpsuck', 'pnmpaste', 'pamsharpness', 'unflatten', 'gdcmscanner', 'opj_compress', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'gtscompare', 'vimdiff', 'libnetcfg', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'b2', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'swig', 'autoscan', 'gd2togif', '411toppm', 'orted', 'gcc-ranlib-9', 'gfortran', 'mm2gv', 'asn1Decoding', 'opj_dump', '2to3', 'gdcmdump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'pamfind', 'ompi_info', 'gs', 'png-fix-itxt', 'dot', 'pamslice', 'pamsharpmap', 'ppmtotga', 'xxd', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'encguess', 'pgmtosbig', 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'ippeveprinter', 'hdid', 'dc', 'biff', 'perl5.28', 'mailx', 'odutil', 'jsadebugd', 'xargs', 'texi2dvi', 'debinhex5.18.pl', 'priclass.d', 'pod2latex5.18', 'ptardiff5.28', 'topsysproc', 'nl', 'dbilogstrip5.18', 'view', 'jjs', 'spfquery', 'sample', 'bg', 'lipo', 'seeksize.d', 'eyapp', 'clang++', 'setuids.d', 'shlock', 'symbols', 'afmtodit', 'gzexe', 'mkdep', 'a2p5.18', 'genstrings', 'at', 'what', 'sdx', 'm4', 'asa', 'iptab', 'format-sql5.18', 'swiftc', 'nfsstat', 'svnversion', 'uupick', 'ipcs', 'pod2readme5.18', 'pluginkit', 'as', 'MvMac', 'net-server5.18', 'fold', 'gnumake', 'perl5.18', 'log', 'tmutil', 'checknr', 'certtool', 'python2.7', 'vmmap', 'shasum5.18', 'h2xs', 'csrutil', 'shar', 'perldoc5.28', 'ldappasswd', 'lkbib', 'ResMerger', 'bitesize.d', 'db_checkpoint', 'funzip', 'power_report.sh', 'iosnoop', 'atsutil', 'osalang', 'dirname', 'pod2man', 'enc2xs', 'treereg5.28', 'moo-outdated', 'xgettext5.28.pl', 'iopending', 'infokey', 'ncal', 'cpan5.28', 'chflags', 'find2perl5.18', 'fg', 'rwbypid.d', 'jmap', 'dscl', 'leaks', 'splain5.18', 'nbdst', 'mnthome', 'jshell', 'dsexport', 'mdimport', 'id', 'procsystime', 'cd', 'quota', 'uuto', 'fuser', 'dsimport', 'csgather', 'json_pp5.28', 'git-shell', 'ldapsearch', 'command', 'snmp-bridge-mib', 'egrep', 'notifyutil', 'cc', 'dsmemberutil', 'podselect', 'pod2html5.28', 'grn', 'psed', 'whereis', 'tccutil', 'a2p', 'find', 'jstat', 'zcat', 'ip2cc5.18', 'unifdefall', 'nroff', 'pridist.d', 'size', 'timesyncanalyse', 'libnetcfg5.28', 'uustat', 'snmpwalk', 'llvm-g++', 'scp', 'instmodsh5.18', 'tnameserv', 'true', 'afinfo', 'hidutil', 'ldapadd', 'pwpolicy', 'profiles', 'yacc', 'kswitch', 'xcodebuild', 'jobs', 'c89', 'sudo', 'bioutil', 'splain5.28', 'tmdiagnose', 'plockstat', 'xgettext5.18.pl', 'serialver', 'afida', 'pgrep', 'yes', 'lessecho', 'sdiff', 'afscexpand', 'treereg5.18', 'cpan5.18', 'db_deadlock', 'ldapcompare', 'unexpand', 'git-upload-pack', 'ssh-copy-id', 'grolj4', 'fixproc', 'debinhex.pl', 'lorder', 'pod2html5.18', 'ranlib', 'javadoc', 'tput', 'fgrep', 'json_pp5.18', 'sigdist.d', 'ppdhtml', 'libnetcfg5.18', 'auval', 'erb', 'dappprof', 'openssl', 'instmodsh5.28', 'drutil', 'jinfo', 'ip2cc5.28', 'splain', 'pmset', 'xmlcatalog', 'zcmp', 'ptargrep5.28', 'lwp-mirror5.28', 'rwsnoop', 'jstatd', 'htmltree5.28', 'lpr', 'layerutil', 'snmptest', 'mib2c-update', 'grog', 'creatbyproc.d', 'pstruct', 'fdesetup', 'flex', 'hostinfo', 'jcontrol', 'MergePef', 'lpstat', 'SetFile', 'pl2pm5.28', 'pod2html', 'rebase', 'tar', 'rdoc', 'uptime', 's2p', 'pidpersec.d', 'xpath5.18', 'schemagen', 'moo-outdated5.28', 'pod2usage5.28', 'dbiprof5.28', 'cvcp', 'package-stash-conflicts5.28', 'false', 'zegrep', 'memory_pressure', 'uncompress', 'lwp-request', 'ncurses5.4-config', 'findrule5.28', 'sampleproc', 'db_recover', 'ptar5.28', 'h2xs5.28', 'nmedit', 'filebyproc.d', 'bison', 'tclsh8.5', 'jdeps', 'productbuild', 'zipinfo', 'diffstat', 'login', 'db_dump', 'smtpd.py', 'cpuctl', 'cpu_profiler.d', 'which', 'bundler', 'iopattern', 'finger', 'mig', 'sntp', 'klist', 'open', 'GetFileInfo', 'localedef', 'ruby', 'stringdups', 'htmltree', 'ptargrep5.18', 'git', 'tr', 'lwp-mirror5.18', 'htmltree5.18', 'banner', 'leave', 'jconsole', 'paste', 'RezWack', 'moo-outdated5.18', 'bzip2', 'pod2usage5.18', 'uucp', 'passwd', 'dbiprof5.18', 'package-stash-conflicts5.18', 'uuidgen', 'pl2pm5.18', 'install_name_tool', 'cmpdylib', 'makeinfo', 'php-config', 'zfgrep', 'xpath5.28', 'snfsdefrag', 'zipdetails', 'look', 'findrule5.18', 'col', 'dscacheutil', 'ptar5.18', 'zforce', 'lwp-mirror', 'malloc_history', 'cpio', 'nohup', 'kcc', 'ulimit', 'rails', 'bspatch', 'RezDet', 'hotspot.d', 'cvaffinity', 'gatherheaderdoc', 'ppdi', 'pcap-config', 'avmetareadwrite', 'update_dyld_shared_cache_root_mode', 'gen_bridge_metadata', 'gem', 'opendiff', 'h2xs5.18', 'talk', 'expect', 'jimage', 'lockstat', 'dapptrace', 'install-info', 'xattr', 'w', 'gunzip'] ['cat', 'echo', 'launchctl', 'df', 'pwd', 'test', 'csh', 'wait4path', 'unlink', 'sleep', 'stty', 'date', 'ed', 'expr', 'pax', 'bash', 'kill', 'sh', 'ps', 'link', 'tcsh', 'dd', 'mkdir', 'ksh', 'hostname', 'dash', 'rmdir', 'mv', 'ln', 'ls', 'cp', 'sync', 'zsh', 'chmod', 'rm', '['] ['dsconfigad', 'htdbm', 'netbiosd', 'postlock', 'systemsoundserverd', 'dseditgroup', 'avbdeviced', 'rpcinfo', 'BootCacheControl', 'weakpass_edit', 'periodic', 'accton', 'wfsctl', 'postalias', 'slapacl', 'edquota', 'sndiskmove', 'pdisk', 'amt', 'lpadmin', 'fdisk', 'sysadminctl', 'networksetup', 'envvars', 'ktutil', 'setquota', 'otctl', 'sncfgvalidate', 'php-fpm', 'AppleFileServer', 'dnctl', 'mDNSResponder', 'repquota', 'cupsfilter', 'checkgid', 'uuconv', 'sharing', 'vifs', 'ac', 'racoon', 'dsenableroot', 'xsanctl', 'kdcsetup', 'aslmanager', 'screencapture', 'htdigest', 'rtsold', 'chat', 'DevToolsSecurity', 'logresolve', 'cvdbset', 'KernelEventAgent', 'gpt', 'scutil', 'ioreg', 'ab', 'traceroute6', 'pwd_mkdb', 'sysctl', 'appsleepd', 'sshd', 'mDNSResponderHelper', 'authserver', 'sncfginstall', 'postmulti', 'lsof', 'pkgutil', 'slapindex', 'sc_auth', 'ioclasscount', 'uucico', 'firmwarepasswd', 'rarpd', 'tsig-keygen', 'kadmin.local', 'syslogd', 'taskpolicy', 'filecoordinationd', 'dot_clean', 'PasswordService', 'systemsetup', 'zdump', 'snmpd', 'ndp', 'coreaudiod', 'rpcbind', 'praudit', 'usernoted', 'postkick', 'postcat', 'netstat', 'lpc', 'slapadd', 'krbservicesetup', 'sncfgtemplate', 'slapconfig', 'rtadvd', 'httxt2dbm', 'distnoted', 'mtree', 'cupsdisable', 'lpmove', 'disktool', 'purge', 'rpc.statd', 'cupsctl', 'DirectoryService', 'notifyd', 'klist_cdhashes', 'dtrace', 'kextcache', 'cupsd', 'dbmmanage', 'languagesetup', 'skywalkctl', 'mkpassdb', 'postconf', 'createhomedir', 'ocspd', 'iostat', 'cvdb', 'sa', 'rpc.lockd', 'uuxqt', 'mkfile', 'softwareupdate', 'unsetpassword', 'zic', 'nfs4mapid', 'postsuper', 'htpasswd', 'rotatelogs', 'universalaccessd', 'audit', 'httpd', 'bluetoothaudiod', 'slapauth', 'slappasswd', 'localemanager', 'asr', 'cvupdatefs', 'bless', 'cvgather', 'xscertadmin', 'visudo', 'uusched', 'dsconfigldap', 'smbdiagnose', 'cfprefsd', 'auditd', 'uuchk', 'cvfsck', 'kextfind', 'diskutil', 'cvfsid', 'sso_util', 'vsdbutil', 'ddns-confgen', 'ioalloccount', 'uasysdiagnose', 'dev_mkdb', 'hdik', 'slapdn', 'vpnd', 'postqueue', 'setkey', 'tpctl', 'repairHomePermissions', 'spindump', 'cupsreject', 'traceroute', 'quotaoff', 'newsyslog', 'postfix', 'cvfsdb', 'snmptrapd', 'chroot', 'arp', 'cupsaccept', 'nvram', 'chown', 'mkextunpack', 'sncfgremove', 'sncfgquery', 'postlog', 'installer', 'pppd', 'httpd-wrapper', 'system_profiler', 'fcgistarter', 'bluetoothd', 'slapschema', 'kadmin', 'spray', 'cvversions', 'kextlibs', 'tcpdump', 'xartutil', 'securityd', 'nlcontrol', 'quotaon', 'spctl', 'vipw', 'gssd', 'slaptest', 'automount', 'scselect', 'envvars-std', 'graphicssession', 'ckksctl', 'lpinfo', 'smbd', 'serverinfo', 'cvmkfs', 'postmap', 'postdrop', 'cupsenable', 'cron', 'systemstats', 'bnepd', 'kextstat', 'cvlabel', 'sendmail', 'systemkeychain', 'kcditto', 'slapcat', 'ipconfig', 'auditreduce', 'cvadmin', 'WirelessRadioManagerd', 'apachectl', 'htcacheclean'] ['mount_hfs', 'mount_apfs', 'md5', 'fsck', 'mount_udf', 'quotacheck', 'mount_cd9660', 'ping', 'fsck_exfat', 'mount_exfat', 'fsck_udf', 'shutdown', 'route', 'mount_webdav', 'fsck_hfs', 'nfsd', 'reboot', 'nfsiod', 'fsck_cs', 'fsck_apfs', 'fstyp_msdos', 'disklabel', 'mount_msdos', 'fsck_msdos', 'ifconfig', 'halt', 'mount_9p', 'mount_ntfs', 'rtsol', 'newfs_apfs', 'umount', 'fstyp', 'kextunload', 'mpioutil', 'fstyp_ntfs', 'emond', 'mount_nfs', 'newfs_udf', 'mount_ftp', 'pfctl', 'mknod', 'fstyp_udf', 'dmesg', 'mount', 'fibreconfig', 'fstyp_hfs', 'newfs_hfs', 'dynamic_pager', 'launchd', 'newfs_exfat', 'apfs_hfs_convert', 'nologin', 'mount_afp', 'mount_smbfs', 'ping6', 'kextload', 'mount_cddafs', 'mount_fdesc', 'newfs_msdos', 'mount_acfs', 'mount_devfs'] ['luajittex', 'lollipop', 't1disasm', 'chktex', 'rubikrotation', 'lily-rebuild-pdfs', 'weave', 'mag', 'man', 'ebb', 'prepmx', 'mktexlsr', 'gsftopk', 'upmendex', 'dvibook', 'kpsewhere', 'rumakeindex', 'fontinst', 'cef5conv', 'lacheck', 'httexi', 'lily-image-commands', 'texloganalyser', 'dvilj', 'patgen', 'uptex', 'exceltex', 'pdvitype', 'texconfig-sys', 'xmltex', 'vlna', 'texsis', 'dvipdft', 'urlbst', 'pdfcslatex', 'afm2afm', 'cefconv', 'uplatex-dev', 'sjisconv', 'tex2xindy', 'musixtex', 'pdfcsplain', 'opl2ofm', 'de-macro', 'bbl2bib', 'ltx2crossrefxml', 'pdftex', 'r-mpost', 'dvitodvi', 'gftodvi', 'dviconcat', 'texluajitc', 'dvipng', 'pdflatex-dev', 'komkindex', 'tex', 'sty2dtx', 'ppltotf', 'yplan', 'eplain', 'eptex', 'lily-glyph-commands', 'htmex', 'texlua', 'htxelatex', 'xasy', 'fmtutil-user', 'wovp2ovf', 'dvilualatex', 'cefsconv', 'context', 'platex', 'allec', 'adhocfilelist', 'kpsetool', 'makejvf', 'texdoctk', 'xelatex-dev', 'vptovf', 'tex4ht', 'texluajit', 'mtxrunjit', 'uplatex', 'musixflx', 'pfarrei', 'mf', 'latexdiff-vc', 'ttfdump', 'etex', 'fig4latex', 'bibexport', 'ttf2tfm', 'latexmk', 'pmpost', 'ctwill', 'pst2pdf', 'wordcount', 'texconfig-dialog', 'luahbtex', 'lwarpmk', 'dvilj2p', 'dviinfox', 'ttf2kotexfont', 'ctanbib', 'cweave', 'bg5+latex', 'pdfatfi', 'ptex2pdf', 'e2pall', 'kpsewhich', 'upbibtex', 'texdiff', 'mathspic', 'kanji-fontmap-creator', 'kanji-config-updmap', 'asy', 'typeoutfileinfo', 'chklref', 'upmpost', 'pdflatex', 'perltex', 'mkt1font', 'cefslatex', 'cjk-gs-integrate', 'chkdvifont', 'dvitype', 'pdfjadetex', 't1lint', 'jamo-normalize', 'fmtutil-sys', 'wofm2opl', 'dviasm', 'kpsestat', 'pdfxup', 'makedtx', 'pltotf', 'mkindex', 'dvilj6', 'r-pmpost', 'xindy.mem', 'xetex', 'latex', 'ps4pdf', 'multibibliography', 'teckit_compile', 'ttf2afm', 'biburl2doi', 'getmapdl', 'uptftopl', 'contextjit', 'bib2gls', 'texplate', 'match_parens', 'mkjobtexmf', 'updvitomp', 'ps2eps', 'pkfix-helper', 'chkweb', 'arlatex', 'pn2pdf', 'pdfclose', 'xindex', 'clxelatex', 'dosepsbin', 'jadetex', 'a2ping', 'bibzbladd', 'ovf2ovp', 'mfluajit-nowin', 'mpost', 'texosquery-jre5', 'texhash', 'convbkmk', 'thumbpdf', 'pkfix', 'dvihp', 'hbf2gf', 'xindy.run', 'texcount', 'texmfstart', 'latexrevise', 'cefpdflatex', 'texluac', 'dvicopy', 'ctie', 'pdftex-quiet', 'euptex', 'pdftosrc', 'mf-nowin', 'ctangle', 'omfonts', 't1asm', 'mflua-nowin', 'cluttex', 'svn-multi', 'mk4ht', 'afm2tfm', 'pdfopen', 'fragmaster', 'ebong', 'ctanify', 'pygmentex', 'texdef', 'luatex', 'cslatex', 'synctex', 'texdirflatten', 'gbkpdflatex', 'xdvipdfmx', 'sjispdflatex', 'makeindex', 'dviluatex', 'mkofm', 'dvipdfmx', 'psbook', 'dvispc', 'csplain', 'ttftotype42', 'mft', 't1rawafm', 'fmtutil', 'ctwill-twinx', 'simpdftex', 'depythontex', 'otfinfo', 'latexindent', 'kanji-config-updmap-sys', 'extconv', 'disdvi', 'pdvitomp', 'dvipdfm', 'texliveonfly', 'allneeded', 'htcontext', 't1testpage', 'biber', 'dv2dt', 'xindy', 'pdfbook2', 't1unmac', 'xelatex', 'webquiz', 'kpsepath', 'diadia', 'makeglossaries', 'cef5pdflatex', 'autoinst', 'dvilualatex-dev', 'mkpic', 'splitindex', 'repstopdf', 'otangle', 'mfplain', 'latexfileversion', 'latex-git-log', 'inimf', 'lualatex-dev', 'latex2man', 'ps2pk', 'htxetex', 'l3build', 'ptftopl', 'ptex', 'gbklatex', 't1binary', 'bibtex', 't1dotlessj', 'mktexpk', 'detex', 'htlatex', 'odvicopy', 'dvidvi', 'extractres', 'extractbb', 'tie', 'latexdef', 'tlmgr', 'arara', 'ctan-o-mat', 'rubibtex', 'dvigif', 'gftype', 'ketcindy', 'kpseaccess', 'luacsplain', 'cachepic', 'srcredact', 'dtxgen', 'mmafm', 'pktype', 'platex-dev', 'kpsexpand', 'pktogf', 'msxlint', 't1reencode', 'vftovp', 'xhlatex', 'ht', 'mendex', 'make4ht', 'ceflatex', 'texlinks', 'pmxchords', 'mptopdf', 'afm2pl', 'mktexmf', 'lamed', 'gftopk', 'ulqda', 'dvilj4l', 'pooltype', 'bg5latex', 'bibmradd', 'aleph', 'wovf2ovp', 'pdfetex', 'dvi2tty', 'ofm2opl', 'pslatex', 'initex', 'latexpand', 'pamphletangler', 'mkgrkindex', 'mtxrun', 'epsffit', 'listings-ext.sh', 'mktexfmt', 'scor2prt', 'psnup', 'ot2kpx', 'allcm', 'pk2bm', 'dvitomp', 'texindy', 'vpl2vpl', 'luatools', 'cef5latex', 'ctwill-refsort', 'luajithbtex', 'bg5+pdflatex', 'dvisvgm', 'tex2aspc', 'bg5conv', 'deweb', 'tlcockpit', 'cfftot1', 'dviselect', 'odvitype', 'vpl2ovp', 'otp2ocp', 'latexdiff', 'dt2dv', 'bg5pdflatex', 'mf2pt1', 'psresize', 't1mac', 'epspdf', 'pythontex', 'bibtexu', 'authorindex', 'texosquery', 'tlshell', 'pdfxmltex', 'includeres', 't1ascii', 'pdflatexpicscale', 'mfluajit', 'axohelp', 'tangle', 'httex', 'texosquery-jre8', 'checkcites', 'bibtex8', 'dvi2fax', 'otftotfm', 'cefspdflatex', 'mmpfb', 'pfb2pfa', 'vpe', 'psselect', 'latex-dev', 'findhyph', 'gregorio', 'ovp2ovf', 'utf8mex', 'mflua', 'purifyeps', 'autosp', 'bundledoc', 'mllatex', 'tex4ebook', 'xdvi-xaw', 'sjislatex', 'rungs', 'dvilj4', 'ltxfileinfo', 'texconfig', 'updvitype', 'ltximg', 'updmap-user', 'dvips', 'convertgls2bib', 'latex2nemeth', 'pdfjam', 'epstopdf', 'outocp', 'pedigree', 'mkocp', 'kpsereadlink', 'ttf2pk', 'tpic2pdftex', 'kanji-config-updmap-user', 'psjoin', 'm-tx', 'uppltotf', 'texdoc', 'bbox', 'dvired', 'latex-papersize', 'makeglossaries-lite', 't4ht', 'xdvi', 'ps2frag', 'wopl2ofm', 'devnag', 'ctanupload', 'texexec', 'listbib', 'cllualatex', 'lualatex', 'pmxab', 'jfmutil', 'pdfmex', 'tftopl', 'mltex', 'amstex', 'pbibtex', 'pstops', 'optex', 'mex', 'bibdoiadd', 'updmap', 'dvipos', 'luaotfload-tool', 'epspdftk', 'updmap-sys', 'r-upmpost', 'mktextfm', 'texfot', 'checklistings', 'rpdfcrop', 'a5toa4', 'installfont-tl', 'pdfcrop', 'pdfannotextractor'] ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/opt/openssl/bin/glibtoolize...not found Checking for program /usr/local/opt/curl/bin/glibtoolize...not found Checking for program /usr/local/opt/sqlite/bin/glibtoolize...not found Checking for program /usr/local/opt/qt/bin/glibtoolize...not found Checking for program /usr/local/opt/icu4c/sbin/glibtoolize...not found Checking for program /usr/local/opt/icu4c/bin/glibtoolize...not found Checking for program /Users/fire/opt/itk500/bin/glibtoolize...not found Checking for program /Users/fire/opt/mfem34/bin/glibtoolize...not found Checking for program /Users/fire/opt/gismo/bin/glibtoolize...not found Checking for program /Users/fire/opt/petsc313/bin/glibtoolize...not found Checking for program /Users/fire/opt/openmpi402/bin/glibtoolize...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/glibtoolize...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/glibtoolize...not found Checking for program /usr/local/opt/sqlite/bin/glibtoolize...not found Checking for program /usr/local/sbin/glibtoolize...not found Checking for program /usr/local/bin/glibtoolize...found ================================================================================ TEST configurePrograms from config.programs(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /usr/local/opt/openssl/bin/sh...not found Checking for program /usr/local/opt/curl/bin/sh...not found Checking for program /usr/local/opt/sqlite/bin/sh...not found Checking for program /usr/local/opt/qt/bin/sh...not found Checking for program /usr/local/opt/icu4c/sbin/sh...not found Checking for program /usr/local/opt/icu4c/bin/sh...not found Checking for program /Users/fire/opt/itk500/bin/sh...not found Checking for program /Users/fire/opt/mfem34/bin/sh...not found Checking for program /Users/fire/opt/gismo/bin/sh...not found Checking for program /Users/fire/opt/petsc313/bin/sh...not found Checking for program /Users/fire/opt/openmpi402/bin/sh...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/sh...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/sh...not found Checking for program /usr/local/opt/sqlite/bin/sh...not found Checking for program /usr/local/sbin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/local/opt/openssl/bin/sed...not found Checking for program /usr/local/opt/curl/bin/sed...not found Checking for program /usr/local/opt/sqlite/bin/sed...not found Checking for program /usr/local/opt/qt/bin/sed...not found Checking for program /usr/local/opt/icu4c/sbin/sed...not found Checking for program /usr/local/opt/icu4c/bin/sed...not found Checking for program /Users/fire/opt/itk500/bin/sed...not found Checking for program /Users/fire/opt/mfem34/bin/sed...not found Checking for program /Users/fire/opt/gismo/bin/sed...not found Checking for program /Users/fire/opt/petsc313/bin/sed...not found Checking for program /Users/fire/opt/openmpi402/bin/sed...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/sed...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/sed...found Defined make macro "SED" to "/usr/local/opt/gnu-sed/libexec/gnubin/sed" Running Executable WITHOUT threads to time it out Executing: /usr/local/opt/gnu-sed/libexec/gnubin/sed -i s/sed/sd/g "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.programs/sed1" Adding SEDINPLACE cmd: /usr/local/opt/gnu-sed/libexec/gnubin/sed -i Defined make macro "SEDINPLACE" to "/usr/local/opt/gnu-sed/libexec/gnubin/sed -i" Checking for program /usr/local/opt/openssl/bin/mv...not found Checking for program /usr/local/opt/curl/bin/mv...not found Checking for program /usr/local/opt/sqlite/bin/mv...not found Checking for program /usr/local/opt/qt/bin/mv...not found Checking for program /usr/local/opt/icu4c/sbin/mv...not found Checking for program /usr/local/opt/icu4c/bin/mv...not found Checking for program /Users/fire/opt/itk500/bin/mv...not found Checking for program /Users/fire/opt/mfem34/bin/mv...not found Checking for program /Users/fire/opt/gismo/bin/mv...not found Checking for program /Users/fire/opt/petsc313/bin/mv...not found Checking for program /Users/fire/opt/openmpi402/bin/mv...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/mv...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/mv...not found Checking for program /usr/local/opt/sqlite/bin/mv...not found Checking for program /usr/local/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/local/opt/openssl/bin/cp...not found Checking for program /usr/local/opt/curl/bin/cp...not found Checking for program /usr/local/opt/sqlite/bin/cp...not found Checking for program /usr/local/opt/qt/bin/cp...not found Checking for program /usr/local/opt/icu4c/sbin/cp...not found Checking for program /usr/local/opt/icu4c/bin/cp...not found Checking for program /Users/fire/opt/itk500/bin/cp...not found Checking for program /Users/fire/opt/mfem34/bin/cp...not found Checking for program /Users/fire/opt/gismo/bin/cp...not found Checking for program /Users/fire/opt/petsc313/bin/cp...not found Checking for program /Users/fire/opt/openmpi402/bin/cp...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/cp...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/cp...not found Checking for program /usr/local/opt/sqlite/bin/cp...not found Checking for program /usr/local/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/local/opt/openssl/bin/grep...not found Checking for program /usr/local/opt/curl/bin/grep...not found Checking for program /usr/local/opt/sqlite/bin/grep...not found Checking for program /usr/local/opt/qt/bin/grep...not found Checking for program /usr/local/opt/icu4c/sbin/grep...not found Checking for program /usr/local/opt/icu4c/bin/grep...not found Checking for program /Users/fire/opt/itk500/bin/grep...not found Checking for program /Users/fire/opt/mfem34/bin/grep...not found Checking for program /Users/fire/opt/gismo/bin/grep...not found Checking for program /Users/fire/opt/petsc313/bin/grep...not found Checking for program /Users/fire/opt/openmpi402/bin/grep...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/grep...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/grep...not found Checking for program /usr/local/opt/sqlite/bin/grep...not found Checking for program /usr/local/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/opt/openssl/bin/rm...not found Checking for program /usr/local/opt/curl/bin/rm...not found Checking for program /usr/local/opt/sqlite/bin/rm...not found Checking for program /usr/local/opt/qt/bin/rm...not found Checking for program /usr/local/opt/icu4c/sbin/rm...not found Checking for program /usr/local/opt/icu4c/bin/rm...not found Checking for program /Users/fire/opt/itk500/bin/rm...not found Checking for program /Users/fire/opt/mfem34/bin/rm...not found Checking for program /Users/fire/opt/gismo/bin/rm...not found Checking for program /Users/fire/opt/petsc313/bin/rm...not found Checking for program /Users/fire/opt/openmpi402/bin/rm...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/rm...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/rm...not found Checking for program /usr/local/opt/sqlite/bin/rm...not found Checking for program /usr/local/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/local/opt/openssl/bin/diff...not found Checking for program /usr/local/opt/curl/bin/diff...not found Checking for program /usr/local/opt/sqlite/bin/diff...not found Checking for program /usr/local/opt/qt/bin/diff...not found Checking for program /usr/local/opt/icu4c/sbin/diff...not found Checking for program /usr/local/opt/icu4c/bin/diff...not found Checking for program /Users/fire/opt/itk500/bin/diff...not found Checking for program /Users/fire/opt/mfem34/bin/diff...not found Checking for program /Users/fire/opt/gismo/bin/diff...not found Checking for program /Users/fire/opt/petsc313/bin/diff...not found Checking for program /Users/fire/opt/openmpi402/bin/diff...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/diff...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/diff...not found Checking for program /usr/local/opt/sqlite/bin/diff...not found Checking for program /usr/local/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Running Executable WITHOUT threads to time it out Executing: "/usr/bin/diff" -w "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.programs/diff1" "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /Users/fire/fun2/demox/petsc-3.13.0/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Defined make macro "PYTHON" to "/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python" Checking for program /usr/local/opt/openssl/bin/m4...not found Checking for program /usr/local/opt/curl/bin/m4...not found Checking for program /usr/local/opt/sqlite/bin/m4...not found Checking for program /usr/local/opt/qt/bin/m4...not found Checking for program /usr/local/opt/icu4c/sbin/m4...not found Checking for program /usr/local/opt/icu4c/bin/m4...not found Checking for program /Users/fire/opt/itk500/bin/m4...not found Checking for program /Users/fire/opt/mfem34/bin/m4...not found Checking for program /Users/fire/opt/gismo/bin/m4...not found Checking for program /Users/fire/opt/petsc313/bin/m4...not found Checking for program /Users/fire/opt/openmpi402/bin/m4...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/m4...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/m4...not found Checking for program /usr/local/opt/sqlite/bin/m4...not found Checking for program /usr/local/sbin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 1.911661 ================================================================================ TEST configureMake from config.packages.make(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/make.py:87) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:87) Check Guesses for GNU make Running Executable WITHOUT threads to time it out Executing: gmake --version stdout: GNU Make 4.3 Built for x86_64-apple-darwin19.2.0 Copyright (C) 1988-2020 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /usr/local/opt/openssl/bin/gmake...not found Checking for program /usr/local/opt/curl/bin/gmake...not found Checking for program /usr/local/opt/sqlite/bin/gmake...not found Checking for program /usr/local/opt/qt/bin/gmake...not found Checking for program /usr/local/opt/icu4c/sbin/gmake...not found Checking for program /usr/local/opt/icu4c/bin/gmake...not found Checking for program /Users/fire/opt/itk500/bin/gmake...not found Checking for program /Users/fire/opt/mfem34/bin/gmake...not found Checking for program /Users/fire/opt/gismo/bin/gmake...not found Checking for program /Users/fire/opt/petsc313/bin/gmake...not found Checking for program /Users/fire/opt/openmpi402/bin/gmake...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/gmake...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/gmake...not found Checking for program /usr/local/opt/sqlite/bin/gmake...not found Checking for program /usr/local/sbin/gmake...not found Checking for program /usr/local/bin/gmake...found Defined make macro "MAKE" to "/usr/local/bin/gmake" ================================================================================ TEST setupGNUMake from config.packages.make(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/make.py:121) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:121) Setup other GNU make stuff Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/local/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/local/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST configureMakeNP from config.packages.make(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/make.py:168) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:168) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 16 cores: using make_np = 13 Defined make macro "MAKE_NP" to "13" Defined make macro "MAKE_TEST_NP" to "8" Defined make macro "MAKE_LOAD" to "24.0" Defined make macro "NPMAX" to "16" child config.packages.make 0.024745 ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000656 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.007025 ================================================================================ TEST checkDependencies from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:617) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:617) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search MPI: ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Found header files [] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking for headers ['mpi.h'] in Compiler specific search MPI: ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking include with compiler flags var CPPFLAGS ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/Users/fire/opt/openmpi402/include -I/Users/fire/opt/openmpi402/lib /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkMPIDistro from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:478) TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:478) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:4:25: error: use of undeclared identifier 'I_MPI_VERSION' const char *mpich_ver = I_MPI_VERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'I_MPI_NUMVERSION' int mpich_ver = I_MPI_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MVAPICH2_NUMVERSION' int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MPICH_NUMVERSION' int mpich_ver = MPICH_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "4" Defined "HAVE_OMPI_MINOR_VERSION" to "0" Defined "HAVE_OMPI_RELEASE_VERSION" to "2" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST configureMPI2 from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:253) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:253) Check for functions added to the interface in MPI-2 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:35: warning: if statement has empty body [-Wempty-body] int flag;if (MPI_Finalized(&flag)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:35: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:71: warning: if statement has empty body [-Wempty-body] if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:71: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:94: warning: incompatible integer to pointer conversion initializing 'MPI_Datatype' (aka 'struct ompi_datatype_t *') with an expression of type 'int' [-Wint-conversion] int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:7:121: warning: if statement has empty body [-Wempty-body] if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:7:121: note: put the semicolon on a separate line to silence this warning 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:1: warning: 'MPI_Comm_errhandler_fn' is deprecated: MPI_Comm_errhandler_fn was deprecated in MPI-2.2; use MPI_Comm_errhandler_function instead [-Wdeprecated-declarations] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /Users/fire/opt/openmpi402/include/mpi.h:468:9: note: 'MPI_Comm_errhandler_fn' has been explicitly marked deprecated here __mpi_interface_deprecated__("MPI_Comm_errhandler_fn was deprecated in MPI-2.2; use MPI_Comm_errhandler_function instead"); ^ /Users/fire/opt/openmpi402/include/mpi.h:279:78: note: expanded from macro '__mpi_interface_deprecated__' # define __mpi_interface_deprecated__(msg) __attribute__((__deprecated__(msg))) ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:131: warning: if statement has empty body [-Wempty-body] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:131: note: put the semicolon on a separate line to silence this warning 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:63: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:63: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:49: warning: if statement has empty body [-Wempty-body] if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:49: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:102: warning: if statement has empty body [-Wempty-body] char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:102: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:298) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:298) Check for functions added to the interface in MPI-3 Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:7:112: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:7:112: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:8:111: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:8:111: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:9:82: warning: if statement has empty body [-Wempty-body] if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:9:82: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:7:96: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:7:96: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:8:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:8:110: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:9:96: warning: if statement has empty body [-Wempty-body] if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:9:96: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:10:109: warning: if statement has empty body [-Wempty-body] if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:10:109: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:11:97: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:11:97: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:12:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:12:110: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:13:96: warning: if statement has empty body [-Wempty-body] if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:13:96: note: put the semicolon on a separate line to silence this warning 7 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:8:145: warning: if statement has empty body [-Wempty-body] if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:8:145: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:9:89: warning: if statement has empty body [-Wempty-body] if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:9:89: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:10:95: warning: if statement has empty body [-Wempty-body] if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:10:95: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:7:3: error: This OpenMPI is not CUDA-aware #error This OpenMPI is not CUDA-aware ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:104: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:104: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:99: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^~~ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ = NULL 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:84: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^~~ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ = NULL 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_RGET" to "1" ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:175) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:175) Checking for location of mpiexec Checking for program /usr/local/opt/openssl/bin/mpiexec...not found Checking for program /usr/local/opt/openssl/bin/mpirun...not found Checking for program /usr/local/opt/openssl/bin/mprun...not found Checking for program /usr/local/opt/curl/bin/mpiexec...not found Checking for program /usr/local/opt/curl/bin/mpirun...not found Checking for program /usr/local/opt/curl/bin/mprun...not found Checking for program /usr/local/opt/sqlite/bin/mpiexec...not found Checking for program /usr/local/opt/sqlite/bin/mpirun...not found Checking for program /usr/local/opt/sqlite/bin/mprun...not found Checking for program /usr/local/opt/qt/bin/mpiexec...not found Checking for program /usr/local/opt/qt/bin/mpirun...not found Checking for program /usr/local/opt/qt/bin/mprun...not found Checking for program /usr/local/opt/icu4c/sbin/mpiexec...not found Checking for program /usr/local/opt/icu4c/sbin/mpirun...not found Checking for program /usr/local/opt/icu4c/sbin/mprun...not found Checking for program /usr/local/opt/icu4c/bin/mpiexec...not found Checking for program /usr/local/opt/icu4c/bin/mpirun...not found Checking for program /usr/local/opt/icu4c/bin/mprun...not found Checking for program /Users/fire/opt/itk500/bin/mpiexec...not found Checking for program /Users/fire/opt/itk500/bin/mpirun...not found Checking for program /Users/fire/opt/itk500/bin/mprun...not found Checking for program /Users/fire/opt/mfem34/bin/mpiexec...not found Checking for program /Users/fire/opt/mfem34/bin/mpirun...not found Checking for program /Users/fire/opt/mfem34/bin/mprun...not found Checking for program /Users/fire/opt/gismo/bin/mpiexec...not found Checking for program /Users/fire/opt/gismo/bin/mpirun...not found Checking for program /Users/fire/opt/gismo/bin/mprun...not found Checking for program /Users/fire/opt/petsc313/bin/mpiexec...not found Checking for program /Users/fire/opt/petsc313/bin/mpirun...not found Checking for program /Users/fire/opt/petsc313/bin/mprun...not found Checking for program /Users/fire/opt/openmpi402/bin/mpiexec...found Running Executable with threads to time it out at 60 Executing: mpiexec -help all stdout: mpiexec (OpenRTE) 4.0.2 Usage: mpiexec [OPTION]... [PROGRAM]... Start the given program using Open RTE -allow-run-as-root|--allow-run-as-root Allow execution as root (STRONGLY DISCOURAGED) -am Aggregate MCA parameter set file list --app Provide an appfile; ignore all other command line options --bind-to Policy for binding processes. Allowed values: none, hwthread, core, l1cache, l2cache, l3cache, socket, numa, board, cpu-list ("none" is the default when oversubscribed, "core" is the default when np<=2, and "socket" is the default when np>2). Allowed qualifiers: overload-allowed, if-supported, ordered -bind-to-core|--bind-to-core Bind processes to cores -bind-to-socket|--bind-to-socket Bind processes to sockets -bycore|--bycore Whether to map and rank processes round-robin by core -bynode|--bynode Whether to map and rank processes round-robin by node -byslot|--byslot Whether to map and rank processes round-robin by slot -c|-np|--np Number of processes to run -cf|--cartofile Provide a cartography file -continuous|--continuous Job is to run until explicitly terminated -cpu-list|--cpu-list List of processor IDs to bind processes to [default=NULL] -cpu-set|--cpu-set Comma-separated list of ranges specifying logical cpus allocated to this job [default: none] -cpus-per-proc|--cpus-per-proc Number of cpus to use for each process [default=1] -cpus-per-rank|--cpus-per-rank Synonym for cpus-per-proc -d|-debug-devel|--debug-devel Enable debugging of OpenRTE -debug|--debug Invoke the user-level debugger indicated by the orte_base_user_debugger MCA parameter -debug-daemons|--debug-daemons Enable debugging of any OpenRTE daemons used by this application -debug-daemons-file|--debug-daemons-file Enable debugging of any OpenRTE daemons used by this application, storing output in files -debugger|--debugger Sequence of debuggers to search for when "--debug" is used -default-hostfile|--default-hostfile Provide a default hostfile -disable-recovery|--disable-recovery Disable recovery (resets all recovery options to off) -display-allocation|--display-allocation Display the allocation being used by this job -display-devel-allocation|--display-devel-allocation Display a detailed list (mostly intended for developers) of the allocation being used by this job -display-devel-map|--display-devel-map Display a detailed process map (mostly intended for developers) just before launch -display-diffable-map|--display-diffable-map Display a diffable process map (mostly intended for developers) just before launch -display-map|--display-map Display the process map just before launch -display-topo|--display-topo Display the topology as part of the process map (mostly intended for developers) just before launch -do-not-launch|--do-not-launch Perform all necessary operations to prepare to launch the application, but do not actually launch it -do-not-resolve|--do-not-resolve Do not attempt to resolve interfaces -dvm|--dvm Create a persistent distributed virtual machine (DVM) -enable-instant-on-support|--enable-instant-on-support Enable PMIx-based instant on launch support (experimental) -enable-recovery|--enable-recovery Enable recovery from process failure [Default = disabled] -fwd-mpirun-port|--fwd-mpirun-port Forward mpirun port to compute node daemons so all will use it -get-stack-traces|--get-stack-traces Get stack traces of all application procs on timeout -gmca|--gmca Pass global MCA parameters that are applicable to all contexts (arg0 is the parameter name; arg1 is the parameter value) -h|--help This help message -H|-host|--host List of hosts to invoke processes on -hnp|--hnp Specify the URI of the HNP, or the name of the file (specified as file:filename) that contains that info -hostfile|--hostfile Provide a hostfile -index-argv-by-rank|--index-argv-by-rank Uniquely index argv[0] for each process using its rank -launch-agent|--launch-agent Command used to start processes on remote nodes (default: orted) -leave-session-attached|--leave-session-attached Enable debugging of OpenRTE -machinefile|--machinefile Provide a hostfile --map-by Mapping Policy [slot | hwthread | core | socket (default) | numa | board | node] -max-restarts|--max-restarts Max number of times to restart a failed process -max-vm-size|--max-vm-size Number of processes to run -mca|--mca Pass context-specific MCA parameters; they are considered global if --gmca is not used and only one context is specified (arg0 is the parameter name; arg1 is the parameter value) -merge-stderr-to-stdout|--merge-stderr-to-stdout Merge stderr to stdout for each process -N Launch n processes per node on all allocated nodes (synonym for 'map-by node') -n|--n Number of processes to run -nolocal|--nolocal Do not run any MPI applications on the local node -nooversubscribe|--nooversubscribe Nodes are not to be oversubscribed, even if the system supports such operation --noprefix Disable automatic --prefix behavior -novm|--novm Execute without creating an allocation-spanning virtual machine (only start daemons on nodes hosting application procs) -npernode|--npernode Launch n processes per node on all allocated nodes -npersocket|--npersocket Launch n processes per socket on all allocated nodes -ompi-server|--ompi-server Specify the URI of the publish/lookup server, or the name of the file (specified as file:filename) that contains that info -output-filename|--output-filename Redirect output from application processes into filename/job/rank/std[out,err,diag]. A relative path value will be converted to an absolute path -output-proctable|--output-proctable Output the debugger proctable after launch -oversubscribe|--oversubscribe Nodes are allowed to be oversubscribed, even on a managed system, and overloading of processing elements -path|--path PATH to be used to look for executables to start processes -pernode|--pernode Launch one process per available node -personality|--personality Comma-separated list of programming model, languages, and containers being used (default="ompi") --ppr Comma-separated list of number of processes on a given resource type [default: none] --prefix Prefix where Open MPI is installed on remote nodes --preload-files Preload the comma separated list of files to the remote machines current working directory before starting the remote process. -q|--quiet Suppress helpful messages --rank-by Ranking Policy [slot (default) | hwthread | core | socket | numa | board | node] -report-bindings|--report-bindings Whether to report process bindings to stderr -report-child-jobs-separately|--report-child-jobs-separately Return the exit status of the primary job only -report-events|--report-events Report events to a tool listening at the specified URI -report-pid|--report-pid Printout pid on stdout [-], stderr [+], or a file [anything else] -report-state-on-timeout|--report-state-on-timeout Report all job and process states upon timeout -report-uri|--report-uri Printout URI on stdout [-], stderr [+], or a file [anything else] -rf|--rankfile Provide a rankfile file -s|--preload-binary Preload the binary on the remote machine before starting the remote process. -set-cwd-to-session-dir|--set-cwd-to-session-dir Set the working directory of the started processes to their session directory -show-progress|--show-progress Output a brief periodic report on launch progress -stdin|--stdin Specify procs to receive stdin [rank, all, none] (default: 0, indicating rank 0) -tag-output|--tag-output Tag all output with [job,rank] -timeout|--timeout Timeout the job after the specified number of seconds -timestamp-output|--timestamp-output Timestamp all application process output -tune Application profile options file list -tv|--tv Deprecated backwards compatibility flag; synonym for "--debug" -use-hwthread-cpus|--use-hwthread-cpus Use hardware threads as independent cpus -use-regexp|--use-regexp Use regular expressions for launch -v|--verbose Be verbose -V|--version Print version and exit -wd|--wd Synonym for --wdir -wdir|--wdir Set the working directory of the started processes -x Export an environment variable, optionally specifying a value (e.g., "-x foo" exports the environment variable foo and takes its value from the current environment; "-x foo=bar" exports the environment variable name foo and sets its value to "bar" in the started processes) -xml|--xml Provide all output in XML format -xml-file|--xml-file Provide all output in XML format to the specified file -xterm|--xterm Create a new xterm window and display output from the specified ranks there For additional mpirun arguments, run 'mpirun --help ' The following categories exist: general (Defaults to this option), debug, output, input, mapping, ranking, binding, devel (arguments useful to OMPI Developers), compatibility (arguments supported for backwards compatibility), launch (arguments to modify launch options), and dvm (Distributed Virtual Machine arguments). Report bugs to http://www.open-mpi.org/community/help/ Running Executable with threads to time it out at 60 Executing: mpiexec --oversubscribe -n 1 printenv stdout: OMPI_MCA_rmaps_base_oversubscribe=1 OMPI_MCA_pmix=^s1,s2,cray,isolated PMIX_MCA_mca_base_component_show_load_errors=1 OMPI_COMMAND=printenv OMPI_MCA_orte_precondition_transports=010149687487e1e9-8e196fcdee621c54 TERM_PROGRAM=Apple_Terminal SHELL=/bin/zsh TERM=xterm-256color TMPDIR=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/ TERM_PROGRAM_VERSION=433 TERM_SESSION_ID=D56315C4-0243-402C-9CFA-CF8E5AED4864 LC_ALL=en_US.UTF-8 ZSH=/Users/fire/.oh-my-zsh USER=fire SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.rJSFJUpIRs/Listeners __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 PAGER=less LSCOLORS=Gxfxcxdxbxegedabagacad PATH=/usr/local/opt/openssl/bin:/usr/local/opt/curl/bin:/usr/local/opt/sqlite/bin:/usr/local/opt/qt/bin:/usr/local/opt/icu4c/sbin:/usr/local/opt/icu4c/bin:/Users/fire/opt/itk500/bin:/Users/fire/opt/mfem34/bin:/Users/fire/opt/gismo/bin:/Users/fire/opt/petsc313/bin:/Users/fire/opt/openmpi402/bin:/usr/local/opt/gnu-tar/libexec/gnubin:/usr/local/opt/gnu-sed/libexec/gnubin:/usr/local/opt/sqlite/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin VERSIONER_PYTHON_VERSION=2.7 _=/Users/fire/opt/openmpi402/bin/mpiexec PWD=/Volumes/data3/fun2/demox/petsc-3.13.0 LANG=en_US.UTF-8 XPC_FLAGS=0x0 XPC_SERVICE_NAME=0 SHLVL=2 HOME=/Users/fire LESS=-R LOGNAME=fire LC_CTYPE=UTF-8 PKG_CONFIG_PATH=/usr/local/opt/qt/lib/pkgconfig:/Users/fire/opt/petsc313/lib/pkgconfig: DISPLAY=/private/tmp/com.apple.launchd.JHEc2udqys/org.macosforge.xquartz:0 PETSC_DIR=/Users/fire/fun2/demox/petsc-3.13.0 IPATH_NO_BACKTRACE=1 HFI_NO_BACKTRACE=1 OMPI_MCA_orte_local_daemon_uri=2861563904.0;tcp://127.0.0.1:49285 OMPI_MCA_orte_hnp_uri=2861563904.0;tcp://127.0.0.1:49285 OMPI_MCA_mpi_yield_when_idle=0 OMPI_MCA_orte_app_num=0 OMPI_UNIVERSE_SIZE=8 OMPI_MCA_orte_num_nodes=1 OMPI_MCA_shmem_RUNTIME_QUERY_hint=mmap OMPI_MCA_orte_bound_at_launch=1 OMPI_MCA_ess=^singleton OMPI_MCA_orte_ess_num_procs=1 OMPI_COMM_WORLD_SIZE=1 OMPI_COMM_WORLD_LOCAL_SIZE=1 OMPI_MCA_orte_tmpdir_base=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/ OMPI_MCA_orte_top_session_dir=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T//ompi.iMac-Pro.501 OMPI_MCA_orte_jobfam_session_dir=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T//ompi.iMac-Pro.501/pid.9784 OMPI_NUM_APP_CTX=1 OMPI_FIRST_RANKS=0 OMPI_APP_CTX_NUM_PROCS=1 OMPI_MCA_initial_wdir=/Volumes/data3/fun2/demox/petsc-3.13.0 OMPI_MCA_orte_launch=1 PMIX_NAMESPACE=2861563905 PMIX_RANK=0 PMIX_SERVER_URI3=2861563904.0;tcp4://127.0.0.1:49284 PMIX_SERVER_URI2=2861563904.0;tcp4://127.0.0.1:49284 PMIX_SERVER_URI21=2861563904.0;tcp4://127.0.0.1:49284 PMIX_SECURITY_MODE=native PMIX_PTL_MODULE=tcp,usock PMIX_BFROP_BUFFER_TYPE=PMIX_BFROP_BUFFER_NON_DESC PMIX_GDS_MODULE=ds21,ds12,hash PMIX_SERVER_TMPDIR=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T//ompi.iMac-Pro.501/pid.9784 PMIX_SYSTEM_TMPDIR=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/ PMIX_DSTORE_21_BASE_PATH=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T//ompi.iMac-Pro.501/pid.9784/pmix_dstor_ds21_9784 PMIX_DSTORE_ESH_BASE_PATH=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T//ompi.iMac-Pro.501/pid.9784/pmix_dstor_ds12_9784 OMPI_MCA_ess_base_jobid=2861563905 OMPI_MCA_ess_base_vpid=0 OMPI_COMM_WORLD_RANK=0 OMPI_COMM_WORLD_LOCAL_RANK=0 OMPI_COMM_WORLD_NODE_RANK=0 OMPI_MCA_orte_ess_node_rank=0 PMIX_ID=2861563905.0 OMPI_FILE_LOCATION=/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T//ompi.iMac-Pro.501/pid.9784/0/0 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "OMP" Defined make macro "MPIEXEC" to "mpiexec --oversubscribe" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest to see if it can be run Executing: mpiexec --oversubscribe -n 1 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec --oversubscribe -n 1 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest ================================================================================ TEST configureMPITypes from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:345) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:345) Checking for MPI Datatype handles Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest to see if it can be run Executing: mpiexec --oversubscribe -n 1 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec --oversubscribe -n 1 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest to see if it can be run Executing: mpiexec --oversubscribe -n 1 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec --oversubscribe -n 1 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest to see if it can be run Executing: mpiexec --oversubscribe -n 1 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec --oversubscribe -n 1 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" ================================================================================ TEST SGIMPICheck from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:406) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:406) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: __check_MPI_SGI_barrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:416) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:416) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl ================================================================================ TEST FortranMPICheck from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:432) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:432) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Checking for mpi.mod Checking for functions [] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpif90 -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Running Executable WITHOUT threads to time it out Executing: mpif90 -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_MPI_F90MODULE" to "1" ================================================================================ TEST configureIO from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:454) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:454) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:7:48: warning: if statement has empty body [-Wempty-body] if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:7:48: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:12:54: warning: if statement has empty body [-Wempty-body] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:12:54: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:14:102: warning: if statement has empty body [-Wempty-body] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:14:102: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:18:61: warning: if statement has empty body [-Wempty-body] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:18:61: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:20:101: warning: if statement has empty body [-Wempty-body] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:20:101: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:22:74: warning: if statement has empty body [-Wempty-body] if (MPI_File_close(&fh)); ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:22:74: note: put the semicolon on a separate line to silence this warning /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:18:55: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:17:14: note: initialize the variable 'info' to silence this warning MPI_Info info; ^ = NULL /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:12:24: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:9:61: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = NULL /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:18:27: warning: variable 'disp' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:16:65: note: initialize the variable 'disp' to silence this warning MPI_Offset disp; ^ = 0 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:14:76: warning: variable 'buf' is uninitialized when used here [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~~ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:10:10: note: initialize the variable 'buf' to silence this warning void *buf; ^ = NULL 10 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:558) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:558) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ================================================================================ TEST PetscArchMPICheck from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MPI.py:592) TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:592) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPIX_Iallreduce", referenced from: __check_MPIX_Iallreduce in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [MPIX_Ibarrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPIX_Ibarrier", referenced from: __check_MPIX_Ibarrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_NAMED;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ================================================================================ TEST checkVersion from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.MPI 5.269182 ================================================================================ TEST alternateConfigureLibrary from config.packages.zstd(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.000973 ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.000604 ================================================================================ TEST configureLibrary from config.packages.valgrind(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Found header files [] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking include with compiler flags var CPPFLAGS ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/Users/fire/opt/openmpi402/include -I/Users/fire/opt/openmpi402/lib /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found#include ^~~~~~~~~~~~~~~~~~~~~1 error generated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Found header files [] in ['/usr/local/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/usr/local/include -I/Users/fire/opt/openmpi402/include -I/Users/fire/opt/openmpi402/lib /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 363 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/confdefs.h" 1 # 2 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 # 1 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conffix.h" 1 # 3 "/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c" 2 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found#include ^~~~~~~~~~~~~~~~~~~~~1 error generated.: VALGRIND: DirPath not found.. skipping: /usr/local/lib64 VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin child config.packages.valgrind 0.096079 ================================================================================ TEST alternateConfigureLibrary from config.packages.ssl(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001041 ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.000612 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.000230 ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.000602 ================================================================================ TEST alternateConfigureLibrary from config.packages.radau5(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.000597 ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.000529 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.000599 ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.000555 ================================================================================ TEST alternateConfigureLibrary from config.packages.muparser(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.000612 Defined "PYTHON_EXE" to ""/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python"" Running Executable WITHOUT threads to time it out Executing: /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import Cython" Running Executable WITHOUT threads to time it out Executing: /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import numpy" child config.packages.python 0.124442 ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/petsc4py.py:97) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:97) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] child config.packages.petsc4py 0.001454 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/mpi4py.py:74) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.000989 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.000642 ================================================================================ TEST alternateConfigureLibrary from config.packages.memkind(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000539 ================================================================================ TEST alternateConfigureLibrary from config.packages.libmesh(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/libmesh.py:76) TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.000918 ================================================================================ TEST alternateConfigureLibrary from config.packages.moose(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.000593 ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.000623 ================================================================================ TEST alternateConfigureLibrary from config.packages.libceed(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.000616 Not a clone of PETSc, don't need Lgrind child config.packages.lgrind 0.000184 ================================================================================ TEST alternateConfigureLibrary from config.packages.slepc(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/slepc.py:88) TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:88) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.000924 ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.000634 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.000618 ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.000626 ================================================================================ TEST alternateConfigureLibrary from config.packages.egads(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.000621 ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.000611 ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.000617 ================================================================================ TEST locateC2html from config.packages.c2html(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program /usr/local/opt/openssl/bin/c2html...not found Checking for program /usr/local/opt/curl/bin/c2html...not found Checking for program /usr/local/opt/sqlite/bin/c2html...not found Checking for program /usr/local/opt/qt/bin/c2html...not found Checking for program /usr/local/opt/icu4c/sbin/c2html...not found Checking for program /usr/local/opt/icu4c/bin/c2html...not found Checking for program /Users/fire/opt/itk500/bin/c2html...not found Checking for program /Users/fire/opt/mfem34/bin/c2html...not found Checking for program /Users/fire/opt/gismo/bin/c2html...not found Checking for program /Users/fire/opt/petsc313/bin/c2html...not found Checking for program /Users/fire/opt/openmpi402/bin/c2html...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/c2html...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/c2html...not found Checking for program /usr/local/opt/sqlite/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /Library/TeX/texbin/c2html...not found Checking for program /opt/X11/bin/c2html...not found Checking for program /Users/fire/fun2/demox/petsc-3.13.0/lib/petsc/bin/win32fe/c2html...not found Unable to find programs ['c2html'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['c_rehash', 'openssl'] Warning accessing /usr/local/opt/curl/bin gives errors: [Errno 2] No such file or directory: '/usr/local/opt/curl/bin' ['sqlite3'] ['qmake', 'qmlplugindump', 'tracegen', 'canbusutil', 'macdeployqt', 'rcc', 'qmlprofiler', 'lrelease-pro', 'balsam', 'qmltestrunner', 'lupdate', 'meshdebug', 'lrelease', 'uic', 'macchangeqt', 'lupdate-pro', 'fixqt4headers.pl', 'xmlpatterns', 'qdbusxml2cpp', 'qmlmin', 'qmlimportscanner', 'qtattributionsscanner', 'xmlpatternsvalidator', 'repc', 'qwebengine_convert_dict', 'qdistancefieldgenerator', 'qtpaths', 'lconvert', 'qmlcachegen', 'qmllint', 'qcollectiongenerator', 'qlalr', 'qscxmlc', 'qvkgen', 'qgltf', 'qdbus', 'qhelpgenerator', 'qmleasing', 'qdbuscpp2xml', 'lprodump', 'qtdiag', 'syncqt.pl', 'qtplugininfo', 'qmlscene', 'qmlpreview', 'moc'] ['gennorm2', 'escapesrc', 'gensprep', 'icupkg', 'gencmn', 'genccode'] ['makeconv', 'gencnval', 'icu-config', 'gencfu', 'icuinfo', 'gendict', 'genrb', 'pkgdata', 'genbrk', 'derb', 'uconv'] Warning accessing /Users/fire/opt/itk500/bin gives errors: [Errno 2] No such file or directory: '/Users/fire/opt/itk500/bin' Warning accessing /Users/fire/opt/mfem34/bin gives errors: [Errno 2] No such file or directory: '/Users/fire/opt/mfem34/bin' Warning accessing /Users/fire/opt/gismo/bin gives errors: [Errno 2] No such file or directory: '/Users/fire/opt/gismo/bin' ['cdfdiff', 'nc-config', 'nccopy', 'ncdump', 'ncgen', 'ncgen3', 'ncmpidiff', 'ncmpidump', 'ncmpigen', 'ncoffsets', 'ncvalidator', 'pnetcdf-config', 'pnetcdf_version'] ['aggregate_profile.pl', 'mpic++', 'mpicc', 'mpicxx', 'mpiexec', 'mpif77', 'mpif90', 'mpifort', 'mpirun', 'ompi-clean', 'ompi-server', 'ompi_info', 'opal_wrapper', 'orte-clean', 'orte-info', 'orte-server', 'ortecc', 'orted', 'orterun', 'profile2mat.pl'] ['tar'] ['sed'] ['sqlite3'] ['unbound-anchor', 'unbound-checkconf', 'unbound-control', 'unbound', 'unbound-control-setup', 'unbound-host', '.keepme'] ['ndmetis', 'cpan', 'ppmtouil', 'rubberband', 'pip3.7', 'lzmainfo', 'vtkWrapHierarchy-8.2', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'gtar', 'ppmtoyuvsplit', 'pbmtonokia', 'dot2gxl', 'leaftoppm', 'dvipdf', 'rview', 'event_rpcgen.py', 'pnminvert', 'lame', 'pkg-config', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'vim', 'gif2rgb', 'gen-enc-table', 'pgmslice', 'pktdumper', 'ppmshadow', 'anytopnm', 'tree', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'c++-9', 'pbmtoescp2', 'ppmcie', 'x86_64-apple-darwin19-gcc-9', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'gmake', 'webpng', 'identify', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'ffhash', 'palmtopnm', 'pamseq', 'pcre2grep', 'convertsegfilestops', 'mpif90', 'fitstopnm', 'gifclrmp', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'montage', 'ppmmix', 'gdcmtar', 'wget', 'ffmpeg', 'tificc', 'pip3.8', 'pnmtofits', 'pamrecolor', 'nf-config', 'pgmmake', 'pamaltsat', 'pbmtog3', 'instmodsh', 'cluster', 'pbmtomrf', 'animate', 'git-gui', 'pamtilt', 'MagickCore-config', 'sexp-conv', 'MagickWand-config', 'perlivp', 'ps2ps', 'pbmtodjvurle', 'gv2gml', 'h5copy', 'vi', 'gdcmanon', 'clean-diff', 'x86_64-apple-darwin19-gcc-9.3.0', 'xzdec', 'luac5.3', 'pod2usage', 'tiffsplit', 'pambayer', 'gxl2dot', 'ppmforge', 'corelist', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'gts2oogl', 'mtvtoppm', 'pamstretch', 'vtkWrapPythonInit-8.2', 'h52gif', 'gdcmraw', 'fax2tiff', 'tred', 'vtkWrapJava-8.2', 'pamfunc', 'pcdovtoppm', 'linkicc', 'fourcc2pixfmt', 'git-receive-pack', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'rtmpsuck', 'pnmpaste', 'pamsharpness', 'unflatten', 'gdcmscanner', 'opj_compress', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'gtscompare', 'vimdiff', 'libnetcfg', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'b2', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'swig', 'autoscan', 'gd2togif', '411toppm', 'orted', 'gcc-ranlib-9', 'gfortran', 'mm2gv', 'asn1Decoding', 'opj_dump', '2to3', 'gdcmdump', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'pamfind', 'ompi_info', 'gs', 'png-fix-itxt', 'dot', 'pamslice', 'pamsharpmap', 'ppmtotga', 'xxd', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'pyrcc5', 'luac', 'jbigtopnm', 'encguess', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'bd_info', 'opj_decompress', 'tiffdump', 'convertfilestops', 'pamaddnoise', 'g++-9', 'vtkWrapPython-8.2', 'h5unjam', 'pbmtogem', 'ppmspread', 'seek_print', 'ppmddumpfont', 'gitk', 'fc-pattern', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'rtmpdump', 'unxz', 'ppmdmkfont', 'pbmtolps', 'hwloc-distrib', 'libav-merge-next-commit', 'tiff2bw', 'pammasksharpen', 'jiv', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'gnutls-serv', 'sunicontopnm', 'exrmultiview', 'pcre2test', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'cjpeg', 'cscope', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'easy_install-3.8', 'aggregate_profile.pl', 'escp2topbm', 'jpegtran', 'gvpack', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'ompi-server', 'pod2text', 'yuvtoppm', 'xzegrep', 'gsettings', 'ps2pdfwr', 'gv2gxl', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'nccopy', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'ccache-swig', 'markdown', 'pnmtopng', 'ptardiff', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'perl5.30.2', 'gpcl6', 'xtractprotos', 'twopi', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'DRAWEXE', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'diffimg', 'Magick++-config', 'json_pp', 'pktopbm', 'pgmtolispm', 'normalize.py', 'fiascotopnm', 'pamdepth', 'sidxindex', 'update-mime-database', 'perl', 'gsdj', 'psktool', 'hwloc-calc', 'gif2h5', 'stream', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'ex', 'perlbug', 'xzfgrep', 'sirtopnm', 'gtstemplate', 'webpinfo', 'piconv', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'profile2mat.pl', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'graphml2gv', 'ptargrep', 'pamtompfont', 'h2ph', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 'asn1Coding', 'pnmenlarge', 'rvim', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'make_chlayout_test', 'vimtutor', 'gsnd', 'ppmtopi1', 'ps2pdf13', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'prove', 'pamgetcolor', 'podchecker', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'gdcmdiff', 'rtmpgw', 'rletopnm', 'pngtogd2', 'converttopdf', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'patchwork', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'shasum', 'x86_64-apple-darwin19-gcc-ranlib-9', 'autoupdate', 'gs-X11', 'pnmtosir', 'sccmap', 'pambackground', 'manweb', 'orte-clean', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'python3.7m', 'git-upload-archive', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'ptar', 'pnmtile', 'gdcmimg', 'annotate', 'pamtopnm', 'tesseract', 'fftwf-wisdom', 'happrox', 'pamunlookup', 'pamlevels', 'tiffcrop', 'neotoppm', 'wbmptopbm', 'crypto_bench', 'pbmtobbnbg', 'h5mkgrp', 'gvmap', 'pamrgbatopng', 'rlatopam', 'python3.7m-config', 'pgmramp', 'ocs', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'gts2dxf', 'pnmhisteq', 'gemtopbm', 'idle3', 'cl2c', 'mpmetis', 'gdcmpgif', 'DRAWEXE-7.4.0', 'nettle-pbkdf2', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'gnutls-cli-debug', 'ximtoppm', 'glib-compile-resources', 'gdcmconv', 'pamtogif', 'ppmtoacad', 'mogrify', 'mongoose', 'cpp-9', 'lua', 'draw.sh', 'ps2ascii', 'pl2pm', 'unwrap-diff', 'gen-rc', 'pamdice', 'macptopbm', 'composite', 'pamtosvg', 'pbmtogo', 'pkcs1-conv', 'neato', 'ppmtolj', 'ppmtoxpm', 'img2webp', 'giftext', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'vtkpython', 'plotframes', 'ppmglobe', 'tiffdither', 'sputoppm', 'x86_64-apple-darwin19-gcc-nm-9', 'mpicc', 'cmuwmtopbm', 'htop', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'gdcminfo', 'python3-config', 'ps2pdf', 'git-citool', 'tiffset', 'automake-1.16', 'rtmpsrv', 'pamflip', 'pfmtopam', 'avstopam', 'orterun', 'tgatoppm', 'gnutls-certtool', 'giftogd2', 'gdcmxml', 'imagetops', 'pbmtextps', 'pango-view', 'aomdec', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'perlthanks', 'pf2afm', 'pamcrater', 'zmqshell.py', 'delaunay', 'osage', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'gts2stl', 'ppmtoarbtxt', 'gcov-dump-9', 'ppm3d', 'hwloc-patch', 'giffix', 'pamcomp', 'h5c++', 'pfbtopfa', 'lzless', 'cistopbm', 'pamedge', 'xsubpp', 'gdcm2vtk', 'gvgen', 'fileinfo', 'pbmtoatk', 'x86_64-apple-darwin19-gcc-ar-9', 'ppmtoterm', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'perldoc', 'pnmconvol', 'pgmoil', 'gresource', 'converttops', 'flac', 'bioradtopgm', 'git-gui--askpass', 'psidtopgm', 'heif-convert', 'doxmlparser_metrics', 'pamtopfm', 'patcheck', 'pstoimg', 'ocsptool', 'sndfile-regtest', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'nginx', 'jpegtopnm', 'sndfile-concat', 'glibtool', 'gsed', 'gcc-nm-9', 'hipstopgm', 'ppmtopict', 'graphchk', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gvpr', 'gtester-report', 'murge', 'nop', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'glibtoolize', 'ppmrelief', 'ctest', 'aclocal-1.16', 'gdcmscu', 'custom.sh', 'convertsegfilestopdf', 'pamfixtrunc', 'xzless', 'pal2rgb', 'convertformat', 'exrmakepreview', 'gslp', 'opal_wrapper', 'lzcmp', 'pnmstitch', 'circo', 'pcre2-config', 'gd2topng', 'missing_codec_desc', 'ppmtoicr', 'orte-info', 'xzcat', 'pamhue', 'mrftopbm', 'gxl2gv', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'gxps', 'pbmtocmuwm', 'ncdump', 'transicc', 'exrstdattr', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'ffprobe', 'gfortran-9', 'convertfilestopdf', 'pydoc3.7', 'dvd2concat', 'ppmquant', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'pbmmake', 'pnmtotiffcmyk', 'orte-server', 'pamtoavs', 'pbmtosunicon', 'view', 'compare', 'gifbuild', 'pamsumm', 'pnmpsnr', 'aviocat', 'printafm', 'h5diff', 'ppmtopgm', 'acyclic', 'aomenc', 'gsc', 'pbmtopk', 'gml2gv', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'gtscheck', 'pamendian', 'imginfo', 'rawtopgm', 'cws2fws', 'ps2ps2', 'h5clear', 'psicc', 'pcretest', 'gslj', 'p11tool', 'ps2epsi', 'glib-gettextize', 'xzcmp', 'pamtofits', 'gouldtoppm', 'giftool', 'lzcat', 'pnmtorle', 'pamoil', 'gdcmpap3', 'pbmtoibm23xx', 'jpgicc', 'gsx', 'target_dec_fate.sh', 'sfdp', 'gc', 'ompi-clean', 'pgmmedian', 'nettle-hash', 'gdcmgendir', 'hwloc-diff', 'qt-faststart', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'h2xs', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'trasher', 'env.sh', 'ppmtopj', 'pampop9', 'sip', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'display', 'pod2man', 'graph2dot', 'rename', 'ppmtospu', 'enc2xs', 'git-cvsserver', 'ppmcolors', 'ppmtoleaf', 'conjure', 'lzdiff', 'h5redeploy', 'doxmlparser_test', 'pgmtost4', 'dijkstra', 'pnmtopnm', 'pgmedge', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'pyuic5', 'gdcm2pnm', 'pamtotiff', 'x264', 'glib-genmarshal', 'pcre-config', 'itkTestDriver', 'git-clang-format', 'pyvenv', 'ppmhist', 'dot_builtins', 'prune', 'winicontoppm', 'git-shell', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'ncxx4-config', 'podselect', 'xbmtopbm', 'gmsh', 'ppmtoyuv', 'ffescape', 'ppmtomap', 'pgmcrater', 'doxygen', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'srptool', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'stl2gts', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'gts-config', 'pnmtoplainpnm', 'x86_64-apple-darwin19-c++-9', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'fdp', 'lzmore', 'xvminitoppm', 'git-upload-pack', 'pamfile', 'danetool', 'h5fc', 'mpiexec', 'nettle-lfib-stream', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pgmtofs', 'pngtogd', 'pnmmargin', 'bcomps', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'ismindex', 'sndfile-resample', 'pbmtext', 'import', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'splain', 'gdcmviewer', 'winicontopam', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'magick', 'ccomps', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'pod2html', 'magick-script', 'asn1Parser', 'hb-view', 'nc-config', 'pnmdepth', 'pammosaicknit', 'idn2', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'transform', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'pydoc3', 'vtkParseJava-8.2', 'pamtotga', 'hb-shape', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'ncgen3', 'edgepaint', 'x86_64-apple-darwin19-g++-9', 'svgtopam', 'lzma', 'gdbm_load', 'ortecc', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'x86_64-apple-darwin19-gfortran-9', 'spottopgm', 'pamfix', 'ncgen', 'p11-kit', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'ffplay', 'pylupdate5', 'rdjpgcom', 'sdl2-config', 'ppmbrighten', 'automake', 'icontopbm', 'lzegrep', 'git', 'cpack', 'rd-curves', 'glances', 'uncoded_frame', 'raw2tiff', 'pamtris', 'ppmtoapplevol', 'gnutls-cli', 'latex2html', 'pgmtoppm', 'bisect-create', 'custom_clang_64.sh', 'ppm2tiff', 'loudnorm.rb', 'xzdiff', 'gvcolor', 'imgcmp', 'pcregrep', 'tiff2rgba', 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'xgettext5.18.pl', 'serialver', 'afida', 'pgrep', 'yes', 'lessecho', 'sdiff', 'afscexpand', 'treereg5.18', 'cpan5.18', 'db_deadlock', 'ldapcompare', 'unexpand', 'git-upload-pack', 'ssh-copy-id', 'grolj4', 'fixproc', 'debinhex.pl', 'lorder', 'pod2html5.18', 'ranlib', 'javadoc', 'tput', 'fgrep', 'json_pp5.18', 'sigdist.d', 'ppdhtml', 'libnetcfg5.18', 'auval', 'erb', 'dappprof', 'openssl', 'instmodsh5.28', 'drutil', 'jinfo', 'ip2cc5.28', 'splain', 'pmset', 'xmlcatalog', 'zcmp', 'ptargrep5.28', 'lwp-mirror5.28', 'rwsnoop', 'jstatd', 'htmltree5.28', 'lpr', 'layerutil', 'snmptest', 'mib2c-update', 'grog', 'creatbyproc.d', 'pstruct', 'fdesetup', 'flex', 'hostinfo', 'jcontrol', 'MergePef', 'lpstat', 'SetFile', 'pl2pm5.28', 'pod2html', 'rebase', 'tar', 'rdoc', 'uptime', 's2p', 'pidpersec.d', 'xpath5.18', 'schemagen', 'moo-outdated5.28', 'pod2usage5.28', 'dbiprof5.28', 'cvcp', 'package-stash-conflicts5.28', 'false', 'zegrep', 'memory_pressure', 'uncompress', 'lwp-request', 'ncurses5.4-config', 'findrule5.28', 'sampleproc', 'db_recover', 'ptar5.28', 'h2xs5.28', 'nmedit', 'filebyproc.d', 'bison', 'tclsh8.5', 'jdeps', 'productbuild', 'zipinfo', 'diffstat', 'login', 'db_dump', 'smtpd.py', 'cpuctl', 'cpu_profiler.d', 'which', 'bundler', 'iopattern', 'finger', 'mig', 'sntp', 'klist', 'open', 'GetFileInfo', 'localedef', 'ruby', 'stringdups', 'htmltree', 'ptargrep5.18', 'git', 'tr', 'lwp-mirror5.18', 'htmltree5.18', 'banner', 'leave', 'jconsole', 'paste', 'RezWack', 'moo-outdated5.18', 'bzip2', 'pod2usage5.18', 'uucp', 'passwd', 'dbiprof5.18', 'package-stash-conflicts5.18', 'uuidgen', 'pl2pm5.18', 'install_name_tool', 'cmpdylib', 'makeinfo', 'php-config', 'zfgrep', 'xpath5.28', 'snfsdefrag', 'zipdetails', 'look', 'findrule5.18', 'col', 'dscacheutil', 'ptar5.18', 'zforce', 'lwp-mirror', 'malloc_history', 'cpio', 'nohup', 'kcc', 'ulimit', 'rails', 'bspatch', 'RezDet', 'hotspot.d', 'cvaffinity', 'gatherheaderdoc', 'ppdi', 'pcap-config', 'avmetareadwrite', 'update_dyld_shared_cache_root_mode', 'gen_bridge_metadata', 'gem', 'opendiff', 'h2xs5.18', 'talk', 'expect', 'jimage', 'lockstat', 'dapptrace', 'install-info', 'xattr', 'w', 'gunzip'] ['cat', 'echo', 'launchctl', 'df', 'pwd', 'test', 'csh', 'wait4path', 'unlink', 'sleep', 'stty', 'date', 'ed', 'expr', 'pax', 'bash', 'kill', 'sh', 'ps', 'link', 'tcsh', 'dd', 'mkdir', 'ksh', 'hostname', 'dash', 'rmdir', 'mv', 'ln', 'ls', 'cp', 'sync', 'zsh', 'chmod', 'rm', '['] ['dsconfigad', 'htdbm', 'netbiosd', 'postlock', 'systemsoundserverd', 'dseditgroup', 'avbdeviced', 'rpcinfo', 'BootCacheControl', 'weakpass_edit', 'periodic', 'accton', 'wfsctl', 'postalias', 'slapacl', 'edquota', 'sndiskmove', 'pdisk', 'amt', 'lpadmin', 'fdisk', 'sysadminctl', 'networksetup', 'envvars', 'ktutil', 'setquota', 'otctl', 'sncfgvalidate', 'php-fpm', 'AppleFileServer', 'dnctl', 'mDNSResponder', 'repquota', 'cupsfilter', 'checkgid', 'uuconv', 'sharing', 'vifs', 'ac', 'racoon', 'dsenableroot', 'xsanctl', 'kdcsetup', 'aslmanager', 'screencapture', 'htdigest', 'rtsold', 'chat', 'DevToolsSecurity', 'logresolve', 'cvdbset', 'KernelEventAgent', 'gpt', 'scutil', 'ioreg', 'ab', 'traceroute6', 'pwd_mkdb', 'sysctl', 'appsleepd', 'sshd', 'mDNSResponderHelper', 'authserver', 'sncfginstall', 'postmulti', 'lsof', 'pkgutil', 'slapindex', 'sc_auth', 'ioclasscount', 'uucico', 'firmwarepasswd', 'rarpd', 'tsig-keygen', 'kadmin.local', 'syslogd', 'taskpolicy', 'filecoordinationd', 'dot_clean', 'PasswordService', 'systemsetup', 'zdump', 'snmpd', 'ndp', 'coreaudiod', 'rpcbind', 'praudit', 'usernoted', 'postkick', 'postcat', 'netstat', 'lpc', 'slapadd', 'krbservicesetup', 'sncfgtemplate', 'slapconfig', 'rtadvd', 'httxt2dbm', 'distnoted', 'mtree', 'cupsdisable', 'lpmove', 'disktool', 'purge', 'rpc.statd', 'cupsctl', 'DirectoryService', 'notifyd', 'klist_cdhashes', 'dtrace', 'kextcache', 'cupsd', 'dbmmanage', 'languagesetup', 'skywalkctl', 'mkpassdb', 'postconf', 'createhomedir', 'ocspd', 'iostat', 'cvdb', 'sa', 'rpc.lockd', 'uuxqt', 'mkfile', 'softwareupdate', 'unsetpassword', 'zic', 'nfs4mapid', 'postsuper', 'htpasswd', 'rotatelogs', 'universalaccessd', 'audit', 'httpd', 'bluetoothaudiod', 'slapauth', 'slappasswd', 'localemanager', 'asr', 'cvupdatefs', 'bless', 'cvgather', 'xscertadmin', 'visudo', 'uusched', 'dsconfigldap', 'smbdiagnose', 'cfprefsd', 'auditd', 'uuchk', 'cvfsck', 'kextfind', 'diskutil', 'cvfsid', 'sso_util', 'vsdbutil', 'ddns-confgen', 'ioalloccount', 'uasysdiagnose', 'dev_mkdb', 'hdik', 'slapdn', 'vpnd', 'postqueue', 'setkey', 'tpctl', 'repairHomePermissions', 'spindump', 'cupsreject', 'traceroute', 'quotaoff', 'newsyslog', 'postfix', 'cvfsdb', 'snmptrapd', 'chroot', 'arp', 'cupsaccept', 'nvram', 'chown', 'mkextunpack', 'sncfgremove', 'sncfgquery', 'postlog', 'installer', 'pppd', 'httpd-wrapper', 'system_profiler', 'fcgistarter', 'bluetoothd', 'slapschema', 'kadmin', 'spray', 'cvversions', 'kextlibs', 'tcpdump', 'xartutil', 'securityd', 'nlcontrol', 'quotaon', 'spctl', 'vipw', 'gssd', 'slaptest', 'automount', 'scselect', 'envvars-std', 'graphicssession', 'ckksctl', 'lpinfo', 'smbd', 'serverinfo', 'cvmkfs', 'postmap', 'postdrop', 'cupsenable', 'cron', 'systemstats', 'bnepd', 'kextstat', 'cvlabel', 'sendmail', 'systemkeychain', 'kcditto', 'slapcat', 'ipconfig', 'auditreduce', 'cvadmin', 'WirelessRadioManagerd', 'apachectl', 'htcacheclean'] ['mount_hfs', 'mount_apfs', 'md5', 'fsck', 'mount_udf', 'quotacheck', 'mount_cd9660', 'ping', 'fsck_exfat', 'mount_exfat', 'fsck_udf', 'shutdown', 'route', 'mount_webdav', 'fsck_hfs', 'nfsd', 'reboot', 'nfsiod', 'fsck_cs', 'fsck_apfs', 'fstyp_msdos', 'disklabel', 'mount_msdos', 'fsck_msdos', 'ifconfig', 'halt', 'mount_9p', 'mount_ntfs', 'rtsol', 'newfs_apfs', 'umount', 'fstyp', 'kextunload', 'mpioutil', 'fstyp_ntfs', 'emond', 'mount_nfs', 'newfs_udf', 'mount_ftp', 'pfctl', 'mknod', 'fstyp_udf', 'dmesg', 'mount', 'fibreconfig', 'fstyp_hfs', 'newfs_hfs', 'dynamic_pager', 'launchd', 'newfs_exfat', 'apfs_hfs_convert', 'nologin', 'mount_afp', 'mount_smbfs', 'ping6', 'kextload', 'mount_cddafs', 'mount_fdesc', 'newfs_msdos', 'mount_acfs', 'mount_devfs'] ['luajittex', 'lollipop', 't1disasm', 'chktex', 'rubikrotation', 'lily-rebuild-pdfs', 'weave', 'mag', 'man', 'ebb', 'prepmx', 'mktexlsr', 'gsftopk', 'upmendex', 'dvibook', 'kpsewhere', 'rumakeindex', 'fontinst', 'cef5conv', 'lacheck', 'httexi', 'lily-image-commands', 'texloganalyser', 'dvilj', 'patgen', 'uptex', 'exceltex', 'pdvitype', 'texconfig-sys', 'xmltex', 'vlna', 'texsis', 'dvipdft', 'urlbst', 'pdfcslatex', 'afm2afm', 'cefconv', 'uplatex-dev', 'sjisconv', 'tex2xindy', 'musixtex', 'pdfcsplain', 'opl2ofm', 'de-macro', 'bbl2bib', 'ltx2crossrefxml', 'pdftex', 'r-mpost', 'dvitodvi', 'gftodvi', 'dviconcat', 'texluajitc', 'dvipng', 'pdflatex-dev', 'komkindex', 'tex', 'sty2dtx', 'ppltotf', 'yplan', 'eplain', 'eptex', 'lily-glyph-commands', 'htmex', 'texlua', 'htxelatex', 'xasy', 'fmtutil-user', 'wovp2ovf', 'dvilualatex', 'cefsconv', 'context', 'platex', 'allec', 'adhocfilelist', 'kpsetool', 'makejvf', 'texdoctk', 'xelatex-dev', 'vptovf', 'tex4ht', 'texluajit', 'mtxrunjit', 'uplatex', 'musixflx', 'pfarrei', 'mf', 'latexdiff-vc', 'ttfdump', 'etex', 'fig4latex', 'bibexport', 'ttf2tfm', 'latexmk', 'pmpost', 'ctwill', 'pst2pdf', 'wordcount', 'texconfig-dialog', 'luahbtex', 'lwarpmk', 'dvilj2p', 'dviinfox', 'ttf2kotexfont', 'ctanbib', 'cweave', 'bg5+latex', 'pdfatfi', 'ptex2pdf', 'e2pall', 'kpsewhich', 'upbibtex', 'texdiff', 'mathspic', 'kanji-fontmap-creator', 'kanji-config-updmap', 'asy', 'typeoutfileinfo', 'chklref', 'upmpost', 'pdflatex', 'perltex', 'mkt1font', 'cefslatex', 'cjk-gs-integrate', 'chkdvifont', 'dvitype', 'pdfjadetex', 't1lint', 'jamo-normalize', 'fmtutil-sys', 'wofm2opl', 'dviasm', 'kpsestat', 'pdfxup', 'makedtx', 'pltotf', 'mkindex', 'dvilj6', 'r-pmpost', 'xindy.mem', 'xetex', 'latex', 'ps4pdf', 'multibibliography', 'teckit_compile', 'ttf2afm', 'biburl2doi', 'getmapdl', 'uptftopl', 'contextjit', 'bib2gls', 'texplate', 'match_parens', 'mkjobtexmf', 'updvitomp', 'ps2eps', 'pkfix-helper', 'chkweb', 'arlatex', 'pn2pdf', 'pdfclose', 'xindex', 'clxelatex', 'dosepsbin', 'jadetex', 'a2ping', 'bibzbladd', 'ovf2ovp', 'mfluajit-nowin', 'mpost', 'texosquery-jre5', 'texhash', 'convbkmk', 'thumbpdf', 'pkfix', 'dvihp', 'hbf2gf', 'xindy.run', 'texcount', 'texmfstart', 'latexrevise', 'cefpdflatex', 'texluac', 'dvicopy', 'ctie', 'pdftex-quiet', 'euptex', 'pdftosrc', 'mf-nowin', 'ctangle', 'omfonts', 't1asm', 'mflua-nowin', 'cluttex', 'svn-multi', 'mk4ht', 'afm2tfm', 'pdfopen', 'fragmaster', 'ebong', 'ctanify', 'pygmentex', 'texdef', 'luatex', 'cslatex', 'synctex', 'texdirflatten', 'gbkpdflatex', 'xdvipdfmx', 'sjispdflatex', 'makeindex', 'dviluatex', 'mkofm', 'dvipdfmx', 'psbook', 'dvispc', 'csplain', 'ttftotype42', 'mft', 't1rawafm', 'fmtutil', 'ctwill-twinx', 'simpdftex', 'depythontex', 'otfinfo', 'latexindent', 'kanji-config-updmap-sys', 'extconv', 'disdvi', 'pdvitomp', 'dvipdfm', 'texliveonfly', 'allneeded', 'htcontext', 't1testpage', 'biber', 'dv2dt', 'xindy', 'pdfbook2', 't1unmac', 'xelatex', 'webquiz', 'kpsepath', 'diadia', 'makeglossaries', 'cef5pdflatex', 'autoinst', 'dvilualatex-dev', 'mkpic', 'splitindex', 'repstopdf', 'otangle', 'mfplain', 'latexfileversion', 'latex-git-log', 'inimf', 'lualatex-dev', 'latex2man', 'ps2pk', 'htxetex', 'l3build', 'ptftopl', 'ptex', 'gbklatex', 't1binary', 'bibtex', 't1dotlessj', 'mktexpk', 'detex', 'htlatex', 'odvicopy', 'dvidvi', 'extractres', 'extractbb', 'tie', 'latexdef', 'tlmgr', 'arara', 'ctan-o-mat', 'rubibtex', 'dvigif', 'gftype', 'ketcindy', 'kpseaccess', 'luacsplain', 'cachepic', 'srcredact', 'dtxgen', 'mmafm', 'pktype', 'platex-dev', 'kpsexpand', 'pktogf', 'msxlint', 't1reencode', 'vftovp', 'xhlatex', 'ht', 'mendex', 'make4ht', 'ceflatex', 'texlinks', 'pmxchords', 'mptopdf', 'afm2pl', 'mktexmf', 'lamed', 'gftopk', 'ulqda', 'dvilj4l', 'pooltype', 'bg5latex', 'bibmradd', 'aleph', 'wovf2ovp', 'pdfetex', 'dvi2tty', 'ofm2opl', 'pslatex', 'initex', 'latexpand', 'pamphletangler', 'mkgrkindex', 'mtxrun', 'epsffit', 'listings-ext.sh', 'mktexfmt', 'scor2prt', 'psnup', 'ot2kpx', 'allcm', 'pk2bm', 'dvitomp', 'texindy', 'vpl2vpl', 'luatools', 'cef5latex', 'ctwill-refsort', 'luajithbtex', 'bg5+pdflatex', 'dvisvgm', 'tex2aspc', 'bg5conv', 'deweb', 'tlcockpit', 'cfftot1', 'dviselect', 'odvitype', 'vpl2ovp', 'otp2ocp', 'latexdiff', 'dt2dv', 'bg5pdflatex', 'mf2pt1', 'psresize', 't1mac', 'epspdf', 'pythontex', 'bibtexu', 'authorindex', 'texosquery', 'tlshell', 'pdfxmltex', 'includeres', 't1ascii', 'pdflatexpicscale', 'mfluajit', 'axohelp', 'tangle', 'httex', 'texosquery-jre8', 'checkcites', 'bibtex8', 'dvi2fax', 'otftotfm', 'cefspdflatex', 'mmpfb', 'pfb2pfa', 'vpe', 'psselect', 'latex-dev', 'findhyph', 'gregorio', 'ovp2ovf', 'utf8mex', 'mflua', 'purifyeps', 'autosp', 'bundledoc', 'mllatex', 'tex4ebook', 'xdvi-xaw', 'sjislatex', 'rungs', 'dvilj4', 'ltxfileinfo', 'texconfig', 'updvitype', 'ltximg', 'updmap-user', 'dvips', 'convertgls2bib', 'latex2nemeth', 'pdfjam', 'epstopdf', 'outocp', 'pedigree', 'mkocp', 'kpsereadlink', 'ttf2pk', 'tpic2pdftex', 'kanji-config-updmap-user', 'psjoin', 'm-tx', 'uppltotf', 'texdoc', 'bbox', 'dvired', 'latex-papersize', 'makeglossaries-lite', 't4ht', 'xdvi', 'ps2frag', 'wopl2ofm', 'devnag', 'ctanupload', 'texexec', 'listbib', 'cllualatex', 'lualatex', 'pmxab', 'jfmutil', 'pdfmex', 'tftopl', 'mltex', 'amstex', 'pbibtex', 'pstops', 'optex', 'mex', 'bibdoiadd', 'updmap', 'dvipos', 'luaotfload-tool', 'epspdftk', 'updmap-sys', 'r-upmpost', 'mktextfm', 'texfot', 'checklistings', 'rpdfcrop', 'a5toa4', 'installfont-tl', 'pdfcrop', 'pdfannotextractor'] ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.packages.c2html 0.005235 ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.000627 ================================================================================ TEST alternateConfigureLibrary from config.packages.silo(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.000619 ================================================================================ TEST alternateConfigureLibrary from config.packages.Random123(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.000623 ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000617 ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000502 ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000541 ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000539 ================================================================================ TEST checkDependencies from config.packages.regex(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.regex(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Found header files [] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking for headers ['regex.h'] in Compiler specific search REGEX: ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking include with compiler flags var CPPFLAGS ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/Users/fire/opt/openmpi402/include -I/Users/fire/opt/openmpi402/lib /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['regex.h'] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkVersion from config.packages.regex(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.regex(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.regex 0.157216 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.000923 ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.000560 ================================================================================ TEST checkDependencies from config.packages.X(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.X(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.X(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_XSetWMName", referenced from: __check_XSetWMName in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Compiler specific search X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lX11 -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lX11 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Package specific search directory X: ['/opt/X11/lib/libX11.a'] Contents: ['bin', 'libexec', 'include', 'etc', 'var', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/opt/X11/lib/libX11.a'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 -lc++ -ldl Defined "HAVE_LIBX11" to "1" Checking for optional headers [] in Package specific search directory X: ['/opt/X11/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/X11/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Found header files [] in ['/opt/X11/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking for headers ['X11/Xlib.h'] in Package specific search directory X: ['/opt/X11/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/opt/X11/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking include with compiler flags var CPPFLAGS ['/opt/X11/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/opt/X11/include -I/Users/fire/opt/openmpi402/include -I/Users/fire/opt/openmpi402/lib /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['X11/Xlib.h'] in ['/opt/X11/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkVersion from config.packages.X(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.X(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.X(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.X 0.352258 ================================================================================ TEST alternateConfigureLibrary from config.packages.GLVis(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.000981 ================================================================================ TEST alternateConfigureLibrary from config.packages.CoDiPack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.000617 ================================================================================ TEST alternateConfigureLibrary from config.packages.adblaslapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.000617 ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.000535 child config.packages.cxxlibs 0.000018 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADOLC(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.000617 ================================================================================ TEST locateCMake from config.packages.cmake(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/cmake.py:39) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:39) Looking for default CMake executable Checking for program /usr/local/opt/openssl/bin/cmake...not found Checking for program /usr/local/opt/curl/bin/cmake...not found Checking for program /usr/local/opt/sqlite/bin/cmake...not found Checking for program /usr/local/opt/qt/bin/cmake...not found Checking for program /usr/local/opt/icu4c/sbin/cmake...not found Checking for program /usr/local/opt/icu4c/bin/cmake...not found Checking for program /Users/fire/opt/itk500/bin/cmake...not found Checking for program /Users/fire/opt/mfem34/bin/cmake...not found Checking for program /Users/fire/opt/gismo/bin/cmake...not found Checking for program /Users/fire/opt/petsc313/bin/cmake...not found Checking for program /Users/fire/opt/openmpi402/bin/cmake...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/cmake...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/cmake...not found Checking for program /usr/local/opt/sqlite/bin/cmake...not found Checking for program /usr/local/sbin/cmake...not found Checking for program /usr/local/bin/cmake...found Defined make macro "CMAKE" to "/usr/local/bin/cmake" Looking for default CTest executable Checking for program /usr/local/opt/openssl/bin/ctest...not found Checking for program /usr/local/opt/curl/bin/ctest...not found Checking for program /usr/local/opt/sqlite/bin/ctest...not found Checking for program /usr/local/opt/qt/bin/ctest...not found Checking for program /usr/local/opt/icu4c/sbin/ctest...not found Checking for program /usr/local/opt/icu4c/bin/ctest...not found Checking for program /Users/fire/opt/itk500/bin/ctest...not found Checking for program /Users/fire/opt/mfem34/bin/ctest...not found Checking for program /Users/fire/opt/gismo/bin/ctest...not found Checking for program /Users/fire/opt/petsc313/bin/ctest...not found Checking for program /Users/fire/opt/openmpi402/bin/ctest...not found Checking for program /usr/local/opt/gnu-tar/libexec/gnubin/ctest...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/ctest...not found Checking for program /usr/local/opt/sqlite/bin/ctest...not found Checking for program /usr/local/sbin/ctest...not found Checking for program /usr/local/bin/ctest...found Defined make macro "CTEST" to "/usr/local/bin/ctest" Running Executable WITHOUT threads to time it out Executing: /usr/local/bin/cmake --version stdout: cmake version 3.17.1 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.17.1 child config.packages.cmake 0.012708 ================================================================================ TEST alternateConfigureLibrary from config.packages.googletest(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001054 ================================================================================ TEST alternateConfigureLibrary from config.packages.unittestcpp(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.000654 ================================================================================ TEST alternateConfigureLibrary from config.packages.eigen(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.000629 ================================================================================ TEST alternateConfigureLibrary from config.packages.szlib(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.000628 ================================================================================ TEST checkDependencies from config.packages.zlib(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.zlib(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Checking for library in Compiler specific search ZLIB: [] ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_compress", referenced from: __check_compress in conftest.o "_uncompress", referenced from: __check_uncompress in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Compiler specific search ZLIB: ['libz.a'] ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['libz.a'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lz -lc++ -ldl Defined "HAVE_LIBZ" to "1" Checking for optional headers [] in Compiler specific search ZLIB: ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Found header files [] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking for headers ['zlib.h'] in Compiler specific search ZLIB: ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking include with compiler flags var CPPFLAGS ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/Users/fire/opt/openmpi402/include -I/Users/fire/opt/openmpi402/lib /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['zlib.h'] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkVersion from config.packages.zlib(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.zlib(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.zlib 0.271508 child config.packages.mathlib 0.000020 ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.000981 ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.000622 ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.000625 ================================================================================ TEST alternateConfigureLibrary from config.packages.libpng(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.000630 ================================================================================ TEST alternateConfigureLibrary from config.packages.combblas(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.000625 ================================================================================ TEST alternateConfigureLibrary from config.packages.Triangle(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.000628 ================================================================================ TEST alternateConfigureLibrary from config.packages.metis(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.metis(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.metis 0.000611 ================================================================================ TEST alternateConfigureLibrary from config.packages.pragmatic(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.000614 ================================================================================ TEST alternateConfigureLibrary from config.packages.parmetis(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.parmetis 0.000611 ================================================================================ TEST alternateConfigureLibrary from config.packages.Chaco(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.000611 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.006954 ================================================================================ TEST alternateConfigureLibrary from config.packages.med(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.med 0.000657 ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.000557 ================================================================================ TEST alternateConfigureLibrary from config.packages.ascem-io(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.000634 ================================================================================ TEST alternateConfigureLibrary from config.packages.pflotran(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.000626 ================================================================================ TEST alternateConfigureLibrary from config.packages.alquimia(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.000615 ================================================================================ TEST alternateConfigureLibrary from config.packages.SAMRAI(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.000620 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADIOS2(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADIOS2(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS2 0.000621 child config.packages.flibs 0.000019 ================================================================================ TEST alternateConfigureLibrary from config.packages.pnetcdf(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.000614 ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.000623 ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.000625 ================================================================================ TEST alternateConfigureLibrary from config.packages.fblaslapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.fblaslapack 0.000609 ================================================================================ TEST alternateConfigureLibrary from config.packages.hwloc(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.000630 ================================================================================ TEST checkDependencies from config.packages.pthread(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.pthread(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/pthread.py:20) TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:4:6: warning: declaration of built-in function 'pthread_create' requires inclusion of the header [-Wbuiltin-requires-header] char pthread_create(); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Found header files [] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking include with compiler flags var CPPFLAGS ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/Users/fire/opt/openmpi402/include -I/Users/fire/opt/openmpi402/lib /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['pthread.h'] in ['/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'pthread_barrier_t' pthread_barrier_t *a; ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread/conftest.c:6:20: error: use of undeclared identifier 'a' pthread_barrier_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t *a; ^ /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread/conftest.c:6:12: error: use of undeclared identifier 'a' cpu_set_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicc -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkVersion from config.packages.pthread(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.pthread 0.326484 ================================================================================ TEST alternateConfigureLibrary from config.packages.PTScotch(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.001021 ================================================================================ TEST alternateConfigureLibrary from config.packages.Zoltan(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.000636 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADIOS(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.000658 ================================================================================ TEST alternateConfigureLibrary from config.packages.openmp(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.000552 ================================================================================ TEST checkDependencies from config.packages.viennacl(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.viennacl(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.viennacl(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional viennacl Not checking for library in User specified root directory VIENNACL: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in User specified root directory VIENNACL: ['/Users/fire/opt/viennacl/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/fire/opt/viennacl/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Found header files [] in ['/Users/fire/opt/viennacl/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking for headers ['viennacl/forwards.h'] in User specified root directory VIENNACL: ['/Users/fire/opt/viennacl/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkInclude from config.headers(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['viennacl/forwards.h'] in ['/Users/fire/opt/viennacl/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Checking include with compiler flags var CXXPPFLAGS ['/Users/fire/opt/viennacl/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpicxx -E -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -std=c++14 -I/Users/fire/opt/viennacl/include -I/Users/fire/opt/openmpi402/include -I/Users/fire/opt/openmpi402/lib /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers/conftest.cc Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['viennacl/forwards.h'] in ['/Users/fire/opt/viennacl/include', '/Users/fire/opt/openmpi402/include', '/Users/fire/opt/openmpi402/lib'] ================================================================================ TEST checkVersion from config.packages.viennacl(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.viennacl(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.viennacl(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.viennacl 0.106801 ================================================================================ TEST alternateConfigureLibrary from config.packages.ColPack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.000992 ================================================================================ TEST alternateConfigureLibrary from config.packages.openblas(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.000634 ================================================================================ TEST alternateConfigureLibrary from config.packages.blis(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.000619 ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.000605 ================================================================================ TEST checkDependencies from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/BlasLapack.py:447) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:447) ================================================================================ Checking for BLAS and LAPACK in Default compiler libraries ================================================================================ TEST checkLib from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library [''] ['-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot_", referenced from: __check_ddot_ in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library [''] ['-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot", referenced from: __check_ddot in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default BLIS ================================================================================ TEST checkLib from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['libblis.a'] ['-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lblis -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libblis.a'] ['-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lblis -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default compiler locations ================================================================================ TEST checkLib from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/BlasLapack.py:107) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['libblas.a'] ['-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -lblas -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBBLAS" to "1" Checking for functions [dgetrs_] in library ['liblapack.a'] ['libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" Checking for functions [dgeev_] in library ['liblapack.a'] ['libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ================================================================================ TEST checkMKL from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/BlasLapack.py:518) TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:518) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_mkl_set_num_threads", referenced from: __check_mkl_set_num_threads in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkESSL from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/BlasLapack.py:556) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:556) Check for the IBM ESSL library Checking for functions [iessl] in library ['liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_iessl", referenced from: __check_iessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/BlasLapack.py:564) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:564) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ipessl", referenced from: __check_ipessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkMissing from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/BlasLapack.py:589) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:589) Check for missing LAPACK routines Checking for functions [dgelss_ dgerfs_ dgges_ dhgeqz_ dhseqr_ dorgqr_ dormqr_ dstebz_ dstegr_ dstein_ dsteqr_ dsytri_ dtgsen_ dtrsen_ dtrtrs_] in library ['liblapack.a'] ['libblas.a', 'liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dhgeqz_(); static void _check_dhgeqz_() { dhgeqz_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dormqr_(); static void _check_dormqr_() { dormqr_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dstegr_(); static void _check_dstegr_() { dstegr_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } char dsytri_(); static void _check_dsytri_() { dsytri_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dtrtrs_(); static void _check_dtrtrs_() { dtrtrs_(); } int main() { _check_dgelss_(); _check_dgerfs_(); _check_dgges_(); _check_dhgeqz_(); _check_dhseqr_(); _check_dorgqr_(); _check_dormqr_(); _check_dstebz_(); _check_dstegr_(); _check_dstein_(); _check_dsteqr_(); _check_dsytri_(); _check_dtgsen_(); _check_dtrsen_(); _check_dtrtrs_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -llapack -lblas -llapack -lblas -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" ================================================================================ TEST checklsame from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/BlasLapack.py:605) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:605) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib', '-L/usr/local/Cellar/hwloc/2.2.0/lib', '-Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib', '-L/usr/local/Cellar/libevent/2.1.11_1/lib', '-Wl,-rpath,/Users/fire/opt/openmpi402/lib', '-L/Users/fire/opt/openmpi402/lib', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lgfortran', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0', '-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9', '-lgfortran', '-lquadmath', '-lm'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBMPI_USEMPIF08" to "1" Defined "HAVE_LIBMPI_USEMPI_IGNORE_TKR" to "1" Defined "HAVE_LIBMPI_MPIFH" to "1" Defined "HAVE_LIBMPI" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBQUADMATH" to "1" Defined "HAVE_LIBM" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -llapack -lblas -llapack -lblas -lc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm -lc++ -ldl ================================================================================ TEST checkRuntimeIssues from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/BlasLapack.py:664) TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:664) Determines if BLAS/LAPACK routines use 32 or 64 bit integers All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot_(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot_(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lgfortran -lquadmath -lm -lc++ -ldl Testing executable /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack/conftest to see if it can be run Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack/conftest Checking for 64 bit blas indices: result 0 ================================================================================ TEST checkVersion from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.BlasLapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.BlasLapack 1.702372 ================================================================================ TEST alternateConfigureLibrary from config.packages.sundials(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.sundials(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.sundials 0.000699 ================================================================================ TEST alternateConfigureLibrary from config.packages.spai(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.000685 ================================================================================ TEST alternateConfigureLibrary from config.packages.pARMS(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.000622 ================================================================================ TEST alternateConfigureLibrary from config.packages.p4est(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.p4est 0.000612 ================================================================================ TEST checkDependencies from config.packages.mkl_sparse_optimize(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.mkl_sparse_optimize(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) TESTING: configureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ================================================================================ TEST checkVersion from config.packages.mkl_sparse_optimize(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.mkl_sparse_optimize(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize 0.000808 ================================================================================ TEST checkDependencies from config.packages.mkl_sparse(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.mkl_sparse(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.mkl_sparse(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/mkl_sparse.py:21) TESTING: configureLibrary from config.packages.mkl_sparse(config/BuildSystem/config/packages/mkl_sparse.py:21) ================================================================================ TEST checkVersion from config.packages.mkl_sparse(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.mkl_sparse(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.mkl_sparse(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.mkl_sparse(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.mkl_sparse 0.000725 ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_cpardiso(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.000590 ================================================================================ TEST alternateConfigureLibrary from config.packages.hpddm(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/hpddm.py:120) TESTING: alternateConfigureLibrary from config.packages.hpddm(config/BuildSystem/config/packages/hpddm.py:120) Defined make rule "hpddm-build" with dependencies "" and code [] Defined make rule "hpddm-install" with dependencies "" and code [] child config.packages.hpddm 0.001074 ================================================================================ TEST alternateConfigureLibrary from config.packages.fftw(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.fftw 0.000629 ================================================================================ TEST alternateConfigureLibrary from config.packages.elemental(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.elemental(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.elemental 0.000622 ================================================================================ TEST alternateConfigureLibrary from config.packages.ml(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ml(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ml 0.000684 ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_pardiso(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mkl_pardiso 0.000616 ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU_DIST(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU_DIST 0.000626 ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.SuperLU(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU 0.000613 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST alternateConfigureLibrary from config.packages.SuiteSparse(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.SuiteSparse 0.007092 ================================================================================ TEST alternateConfigureLibrary from config.packages.PaStiX(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.PaStiX(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.PaStiX 0.000639 ================================================================================ TEST alternateConfigureLibrary from config.packages.scalapack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.scalapack 0.000635 ================================================================================ TEST alternateConfigureLibrary from config.packages.strumpack(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.strumpack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.strumpack 0.000694 ================================================================================ TEST alternateConfigureLibrary from config.packages.MUMPS(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MUMPS 0.000777 ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MOAB 0.000622 ================================================================================ TEST alternateConfigureLibrary from config.packages.Chombo(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Chombo(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Chombo 0.000681 ================================================================================ TEST alternateConfigureLibrary from config.packages.hypre(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.hypre(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.hypre 0.000683 ================================================================================ TEST alternateConfigureLibrary from config.packages.Trilinos(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Trilinos(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Trilinos 0.000627 ================================================================================ TEST alternateConfigureLibrary from config.packages.xSDKTrilinos(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.xSDKTrilinos 0.000623 ================================================================================ TEST alternateConfigureLibrary from config.packages.mstk(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mstk(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mstk 0.000630 ================================================================================ TEST alternateConfigureLibrary from config.packages.amanzi(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.amanzi(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.amanzi 0.000620 ================================================================================ TEST alternateConfigureLibrary from config.packages.MFEM(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/MFEM.py:146) TESTING: alternateConfigureLibrary from config.packages.MFEM(config/BuildSystem/config/packages/MFEM.py:146) Defined make rule "mfem-build" with dependencies "" and code [] Defined make rule "mfem-install" with dependencies "" and code [] child config.packages.MFEM 0.000995 ================================================================================ TEST alternateConfigureLibrary from config.packages.AMReX(/Volumes/data3/fun2/demox/petsc-3.13.0/config/BuildSystem/config/packages/AMReX.py:157) TESTING: alternateConfigureLibrary from config.packages.AMReX(config/BuildSystem/config/packages/AMReX.py:157) Defined make rule "amrex-build" with dependencies "" and code [] Defined make rule "amrex-install" with dependencies "" and code [] child config.packages.AMReX 0.000975 ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:684) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:684) All intermediate test results are stored in /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } Defined "RTLD_DEFAULT" to "1" ================================================================================ TEST configurePrefetch from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:509) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:509) Sees if there are any prefetch functions supported Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -lc++ -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" ================================================================================ TEST configureUnused from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:570) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:570) Sees if __attribute((unused)) is supported Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c:7:5: warning: unused variable 'j' [-Wunused-variable] int j = myfunc(&i); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -lc++ -ldl Defined "UNUSED" to "__attribute((unused))" ================================================================================ TEST configureDeprecated from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:588) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:588) Check if __attribute((deprecated)) is supported Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c:3:38: warning: unused function 'myfunc' [-Wunused-function] __attribute((deprecated)) static int myfunc(void) { return 1;} ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED_FUNCTION(why)" to "__attribute((deprecated))" Defined "DEPRECATED_TYPEDEF(why)" to "__attribute((deprecated))" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" enum E {oldval __attribute((deprecated)), newval }; int main() { ; return 0; } Defined "DEPRECATED_ENUM(why)" to "__attribute((deprecated))" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define TEST _Pragma("GCC warning "Testing _Pragma"") value int main() { ; return 0; } Defined "DEPRECATED_MACRO(why)" to "_Pragma(why)" ================================================================================ TEST configureIsatty from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:582) TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:582) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ================================================================================ TEST configureExpect from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:637) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:637) Sees if the __builtin_expect directive is supported Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -lc++ -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" ================================================================================ TEST configureAlign from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:621) TESTING: configureAlign from PETSc.Configure(config/PETSc/Configure.py:621) Check if __attribute(aligned) is supported Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" struct mystruct {int myint;} __attribute((aligned(16))); char assert_aligned[(sizeof(struct mystruct)==16)*2-1]; int main() { ; return 0; } Defined "ATTRIBUTEALIGNED(size)" to "__attribute((aligned(size)))" Defined "HAVE_ATTRIBUTEALIGNED" to "1" ================================================================================ TEST configureFunctionName from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:644) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:644) Sees if the compiler supports __func__ or a variant. Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -lc++ -ldl Defined "FUNCTION_NAME_C" to "__func__" Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicxx -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -lc++ -ldl Defined "FUNCTION_NAME_CXX" to "__func__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:662) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:662) Determine what to use for uintptr_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c:6:18: warning: unused variable 'i' [-Wunused-variable] int x; uintptr_t i = (uintptr_t)&x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" ================================================================================ TEST configureSolaris from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:689) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:689) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:702) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:702) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:708) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:708) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetComputerName] in library ['kernel32'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['advapi32'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['User32.lib'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['user32'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries/conftest.c:4:10: fatal error: 'Windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c:6:7: warning: unused variable 'u' [-Wunused-variable] uid_t u; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c:8:5: warning: unused variable 'a' [-Wunused-variable] int a=R_OK; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c:3:10: fatal error: 'Windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c:3:10: fatal error: 'Windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/Users/fire/opt/petsc313"" Defined make macro "wPETSC_DIR" to "/Users/fire/opt/petsc313" Defined "ARCH" to """" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:780) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:780) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST configureDefaultArch from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:796) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:796) ================================================================================ TEST configureScript from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:813) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:813) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:852) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:852) Setup the directories for installation Defined make rule "print_mesg_after_build" with dependencies "" and code ['-@echo "Now to install the libraries do:"', '-@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} install"', '-@echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:864) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:864) ================================================================================ TEST configureAtoll from PETSc.Configure(/Volumes/data3/fun2/demox/petsc-3.13.0/config/PETSc/Configure.py:565) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:565) Checks if atoll exists Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c:7:6: warning: unused variable 'v' [-Wunused-variable] long v = atoll("25"); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Running Executable WITHOUT threads to time it out Executing: mpicc -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -lc++ -ldl Defined "HAVE_ATOLL" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -show stdout: gcc -I/Users/fire/opt/openmpi402/include -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi Defined "MPICC_SHOW" to ""gcc -I/Users/fire/opt/openmpi402/include -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi"" Defined make macro "CC_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 " Defined "HAVE_CXX" to "1" Defined make macro "CXXPP_FLAGS" to " -std=c++14" Defined make macro "CXX_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14" Defined make macro "CXX_LINKER" to "mpicxx" Defined make macro "CXX_LINKER_FLAGS" to " -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g" Defined make macro "CPP_FLAGS" to "" Defined make macro "PCC" to "mpicc" Defined make macro "PCC_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 " Defined make macro "PCPP_FLAGS" to "" Defined make macro "PFLAGS" to "${CFLAGS}" Defined make macro "PPPFLAGS" to "${CPPFLAGS}" Defined make macro "PY_CFLAGS" to "" Defined make macro "PY_CPPFLAGS" to "" Defined make macro "CC_SUFFIX" to "o" Defined make macro "PCC_LINKER" to "mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3" Defined make macro "CC_LINKER_SUFFIX" to "" Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g " Defined make macro "FC_SUFFIX" to "o" Defined make macro "FC_LINKER" to "mpif90" Defined make macro "FC_LINKER_FLAGS" to " -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g " Defined make macro "DARWIN_COMMONS_USE_DYLIBS" to " -Wl,-commons,use_dylibs " Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Defined make macro "SL_LINKER" to "mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Defined make macro "SL_LINKER_SUFFIX" to "dylib" Defined "SLSUFFIX" to ""dylib"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" Running Executable WITHOUT threads to time it out Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" Running Executable WITHOUT threads to time it out Executing: mpicc -c -o /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.o -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.closure -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.compilersFortran -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.headers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.cacheDetails -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.getResidentSetSize -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.functions -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.featureTestMacros -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.utilities.missing -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.options.scalarTypes -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.MPI -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.setCompilers -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.pthread -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.packages.BlasLapack -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.types -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/config.libraries -I/var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/2k/yhczk3gn6vd0yhkr_2f077yw0000gn/T/petsc-tYYiTZ/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" Defined make macro "BLASLAPACK_LIB" to "-llapack -lblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_VIENNACL" to "1" Defined make macro "VIENNACL_LIB" to "" Defined make macro "VIENNACL_INCLUDE" to "-I/Users/fire/opt/viennacl/include" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_MATHLIB" to "1" Defined make macro "MATHLIB_LIB" to "" Defined make macro "MATHLIB_INCLUDE" to "" Defined "HAVE_ZLIB" to "1" Defined make macro "ZLIB_LIB" to "-lz" Defined make macro "ZLIB_INCLUDE" to "" Defined "HAVE_X" to "1" Defined make macro "X_LIB" to "-Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11" Defined make macro "X_INCLUDE" to "-I/opt/X11/include" Defined "HAVE_REGEX" to "1" Defined make macro "REGEX_LIB" to "" Defined make macro "REGEX_INCLUDE" to "" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "" Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -llapack -lblas -lz -lX11 -lc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm -lc++ -ldl" Defined make macro "PETSC_CC_INCLUDES" to "-I/Users/fire/fun2/demox/petsc-3.13.0/include -I/Users/fire/fun2/demox/petsc-3.13.0/arch-darwin-c-debug/include -I/Users/fire/opt/viennacl/include -I/opt/X11/include" Defined make macro "PETSC_CC_INCLUDES_INSTALL" to "-I/Users/fire/opt/petsc313/include -I/Users/fire/opt/viennacl/include -I/opt/X11/include" Defined make macro "PETSC_FC_INCLUDES" to "-I/Users/fire/fun2/demox/petsc-3.13.0/include -I/Users/fire/fun2/demox/petsc-3.13.0/arch-darwin-c-debug/include -I/Users/fire/opt/viennacl/include -I/opt/X11/include" Defined make macro "PETSC_FC_INCLUDES_INSTALL" to "-I/Users/fire/opt/petsc313/include -I/Users/fire/opt/viennacl/include -I/opt/X11/include" Defined "LIB_DIR" to ""/Users/fire/opt/petsc313/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lpetsc -llapack -lblas -lz -lX11 -lc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm -lc++ -ldl" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--prefix=/Users/fire/opt/petsc313 --with-zlib --with-viennacl=1 --with-viennacl-dir=/Users/fire/opt/viennacl" ================================================================================ child PETSc.Configure 2.191258 child sum 39.590435 child total 39.614990 **** arch-darwin-c-debug/lib/petsc/conf/petscvariables **** MPICXX_SHOW = g++ -I/Users/fire/opt/openmpi402/include -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi C_VERSION = Apple clang version 11.0.3 (clang-1103.0.32.29) C_DEPFLAGS = -MMD -MP FC_DEPFLAGS = -MMD -MP FC_DEFINE_FLAG = -D FC_VERSION = GNU Fortran (Homebrew GCC 9.3.0) 9.3.0 MPICC_SHOW = gcc -I/Users/fire/opt/openmpi402/include -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi AR_FLAGS = cr CXX_DEPFLAGS = -MMD -MP MPIFC_SHOW = gfortran -I/Users/fire/opt/openmpi402/include -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/fire/opt/openmpi402/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi Cxx_VERSION = Apple clang version 11.0.3 (clang-1103.0.32.29) FAST_AR_FLAGS = Scq FC_MODULE_OUTPUT_FLAG = -J PETSC_LANGUAGE = CONLY FC_LINKER_FLAGS = -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SL_LINKER = mpicc CC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 PETSC_PRECISION = double PETSC_LIB_BASIC = -lpetsc PETSC_FC_INCLUDES_INSTALL = -I/Users/fire/opt/petsc313/include -I/Users/fire/opt/viennacl/include -I/opt/X11/include PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} FC_FLAGS = -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g BLASLAPACK_LIB = -llapack -lblas PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC = mpicc SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} SHLIBS = libpetsc MATHLIB_INCLUDE = MPI_LIB = PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} REGEX_INCLUDE = PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -llapack -lblas -lz -lX11 -lc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm -lc++ -ldl PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PY_CFLAGS = SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} PFLAGS = ${CFLAGS} MATHLIB_LIB = CC_SUFFIX = o PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} DARWIN_COMMONS_USE_DYLIBS = -Wl,-commons,use_dylibs CONFIGURE_OPTIONS = --prefix=/Users/fire/opt/petsc313 --with-zlib --with-viennacl=1 --with-viennacl-dir=/Users/fire/opt/viennacl PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXXPP_FLAGS = -std=c++14 PTHREAD_LIB = PETSC_SCALAR = real PETSC_FC_INCLUDES = -I/Users/fire/fun2/demox/petsc-3.13.0/include -I/Users/fire/fun2/demox/petsc-3.13.0/arch-darwin-c-debug/include -I/Users/fire/opt/viennacl/include -I/opt/X11/include CPP_FLAGS = PETSC_WITH_EXTERNAL_LIB = -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/hwloc/2.2.0/lib -Wl,-rpath,/usr/local/Cellar/libevent/2.1.11_1/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -Wl,-rpath,/Users/fire/opt/openmpi402/lib -L/Users/fire/opt/openmpi402/lib -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lpetsc -llapack -lblas -lz -lX11 -lc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm -lc++ -ldl PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = PETSC_CC_INCLUDES_INSTALL = -I/Users/fire/opt/petsc313/include -I/Users/fire/opt/viennacl/include -I/opt/X11/include FC_LINKER = mpif90 PPPFLAGS = ${CPPFLAGS} PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXX_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 PY_CPPFLAGS = PCC_LINKER_FLAGS = -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CXX_LINKER_FLAGS = -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g PCC_LINKER = mpicc PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 PTHREAD_INCLUDE = PETSC_CC_INCLUDES = -I/Users/fire/fun2/demox/petsc-3.13.0/include -I/Users/fire/fun2/demox/petsc-3.13.0/arch-darwin-c-debug/include -I/Users/fire/opt/viennacl/include -I/opt/X11/include VIENNACL_LIB = CXX_LINKER = mpicxx PETSC_TAO_LIB_BASIC = -lpetsc BLASLAPACK_INCLUDE = PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = VIENNACL_INCLUDE = -I/Users/fire/opt/viennacl/include SL_LINKER_SUFFIX = dylib PCPP_FLAGS = FC_MODULE_FLAG = -I X_LIB = -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 wPETSC_DIR = /Users/fire/opt/petsc313 X_INCLUDE = -I/opt/X11/include ZLIB_INCLUDE = PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} MPI_INCLUDE = REGEX_LIB = FC_SUFFIX = o ZLIB_LIB = -lz SHELL = /bin/sh GREP = /usr/bin/grep MV = /bin/mv PYTHON = /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python MKDIR = /bin/mkdir -p SEDINPLACE = /usr/local/opt/gnu-sed/libexec/gnubin/sed -i M4 = /usr/bin/m4 SED = /usr/local/opt/gnu-sed/libexec/gnubin/sed DIFF = /usr/bin/diff -w RM = /bin/rm -f CP = /bin/cp CC_LINKER_SLFLAG = -Wl,-rpath, CXXPP = mpicxx -E CC = mpicc RANLIB = /usr/bin/ranlib -c DYNAMICLINKER = mpicc CXX = mpicxx FC = mpif90 FC_LINKER_SLFLAG = -Wl,-rpath, CPP = mpicc -E AR_LIB_SUFFIX = a LD_SHARED = mpicc AR = /usr/bin/ar CLANGUAGE = C GIT = git PREFIXDIR = /Users/fire/opt/petsc313 PETSC_SCALAR_SIZE = 64 PETSC_INDEX_SIZE = 32 OMAKE_PRINTDIR = /usr/local/bin/gmake --print-directory MAKE_NP = 13 NPMAX = 16 MAKE = /usr/local/bin/gmake MAKE_PAR_OUT_FLG = OMAKE = /usr/local/bin/gmake --no-print-directory MAKE_LOAD = 24.0 MAKE_TEST_NP = 8 SL_LINKER_FUNCTION = -dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup SONAME_FUNCTION = $(1).$(2).dylib BUILDSHAREDLIB = yes LLDB = /usr/bin/lldb DSYMUTIL = /usr/bin/dsymutil MPIEXEC = mpiexec --oversubscribe CMAKE = /usr/local/bin/cmake CTEST = /usr/local/bin/ctest **** arch-darwin-c-debug/lib/petsc/conf/petscrules **** print_mesg_after_build: -@echo "Now to install the libraries do:" -@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} install" -@echo "=========================================" libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_darwin amrex-build: amrex-install: mfem-build: mfem-install: hpddm-build: hpddm-install: slepc-build: slepc-install: libmesh-build: libmesh-install: mpi4py-build: mpi4py-install: petsc4py-build: petsc4py-install: **** arch-darwin-c-debug/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define IS_COLORING_MAX USHRT_MAX #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated)) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/Users/fire/opt/petsc313" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_VIENNACL 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_LIB_DIR "/Users/fire/opt/petsc313/lib" #define PETSC_MPICC_SHOW "gcc -I/Users/fire/opt/openmpi402/include -L/usr/local/Cellar/hwloc/2.2.0/lib -L/usr/local/Cellar/libevent/2.1.11_1/lib -L/Users/fire/opt/openmpi402/lib -lmpi" #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_RTLD_DEFAULT 1 #define PETSC_SLSUFFIX "dylib" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_ISATTY 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_HAVE_C99 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_DEBUGGER "lldb" #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE OMP #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 4 #define PETSC_HAVE_OMPI_MINOR_VERSION 0 #define PETSC_HAVE_OMPI_RELEASE_VERSION 2 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_Alignx(a,b) #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_MEMALIGN 16 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_HAVE_CLOSURE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_PYTHON_EXE "/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python" #endif **** arch-darwin-c-debug/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif **** arch-darwin-c-debug/include/petscpkg_version.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_PKG_MPI_VERSION_MAJOR 3 #define PETSC_PKG_MPI_VERSION_MINOR 0 #define PETSC_PKG_MPI_VERSION_SUBMINOR 0 #define PETSC_PKG_MPI_VERSION_ PETSC_PKG_MPI_VERSION_EQ #define PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MPI_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #endif Attempting to save configure hash file: arch-darwin-c-debug/lib/petsc/conf/configure-hash Saved configure hash file: arch-darwin-c-debug/lib/petsc/conf/configure-hash Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- PETSc: Build : Set default architecture to arch-darwin-c-debug in lib/petsc/conf/petscvariables File creation : Created arch-darwin-c-debug/lib/petsc/conf/reconfigure-arch-darwin-c-debug.py for automatic reconfiguration Framework: RDict update : Substitutions were stored in RDict with parent None File creation : Created makefile configure header arch-darwin-c-debug/lib/petsc/conf/petscvariables File creation : Created makefile configure header arch-darwin-c-debug/lib/petsc/conf/petscrules File creation : Created configure header arch-darwin-c-debug/include/petscconf.h File creation : Created C specific configure header arch-darwin-c-debug/include/petscfix.h File creation : Created configure pkg header arch-darwin-c-debug/include/petscpkg_version.h Compilers: C Compiler: mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 Version: Apple clang version 11.0.3 (clang-1103.0.32.29) C++ Compiler: mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 Version: Apple clang version 11.0.3 (clang-1103.0.32.29) Fortran Compiler: mpif90 -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g Version: GNU Fortran (Homebrew GCC 9.3.0) 9.3.0 Linkers: Shared linker: mpicc -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 Dynamic linker: mpicc -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 Libraries linked against: -lc++ -ldl make: Version: 4.3 /usr/local/bin/gmake BlasLapack: Library: -llapack -lblas Unknown if this uses OpenMP (try export OMP_NUM_THREADS=<1-4> yourprogram -log_view) uses 4 byte integers MPI: Version: 3 Mpiexec: mpiexec --oversubscribe OMPI_VERSION: 4.0.2 pthread: zlib: Library: -lz cmake: Version: 3.17.1 /usr/local/bin/cmake X: Includes: -I/opt/X11/include Library: -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 regex: viennacl: Includes: -I/Users/fire/opt/viennacl/include Language used to compile PETSc: C PETSc: PETSC_ARCH: arch-darwin-c-debug PETSC_DIR: /Users/fire/fun2/demox/petsc-3.13.0 Scalar type: real Precision: double Integer size: 4 bytes shared libraries: enabled Memory alignment from malloc(): 16 bytes xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/Users/fire/fun2/demox/petsc-3.13.0 PETSC_ARCH=arch-darwin-c-debug all xxx=========================================================================xxx ================================================================================ Finishing configure run at Wed, 15 Apr 2020 21:31:24 +0800 ================================================================================