================================================================================ ================================================================================ Starting configure run at Thu, 05 Mar 2020 08:19:17 -0500 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-mpi-dir=/usr/local/Cellar/mpich/3.3.2 COPTFLAGS="-g -O0" CXXOPTFLAGS="-g -O0" FOPTFLAGS="-g -O0" --with-fc=0 --download-metis=1 --download-parmetis=1 --download-fftw --download-p4est=1 --download-zlib --with-cxx-dialect=C++11 --download-triangle=1 --download-hdf5=1 -with-cuda=0 --with-x=1 --with-debugging=1 PETSC_ARCH=arch-macosx-gnu-g --with-64-bit-indices=0 Working directory: /Users/markadams/Codes/petsc Machine platform: ('Darwin', 'MarksMac-221.local', '19.3.0', 'Darwin Kernel Version 19.3.0: Thu Jan 9 20:58:23 PST 2020; root:xnu-6153.81.5~1/RELEASE_X86_64', 'x86_64', 'i386') Python version: 2.7.16 (default, Dec 13 2019, 18:00:32) [GCC 4.2.1 Compatible Apple LLVM 11.0.0 (clang-1100.0.32.4) (-macos10.15-objc-s ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py:911) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:911) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking for program /Users/markadams/homebrew/bin/lldb...not found Checking for program /opt/anaconda2/bin/lldb...not found Checking for program /opt/anaconda2/bin/lldb...not found Checking for program /Users/markadams/opt/miniconda2/bin/lldb...not found Checking for program /opt/miniconda2/bin/lldb...not found Checking for program /Users/markadams/opt/miniconda3/bin/lldb...not found Checking for program /usr/local/opt/texinfo/bin/lldb...not found Checking for program /Users/markadams/homebrew/sbin/lldb...not found Checking for program /Users/markadams/homebrew/bin/lldb...not found Checking for program /Users/markadams/homebrew/bin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /usr/bin/lldb...found Defined make macro "LLDB" to "/usr/bin/lldb" Defined "USE_DEBUGGER" to ""lldb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking for program /Users/markadams/homebrew/bin/dsymutil...not found Checking for program /opt/anaconda2/bin/dsymutil...not found Checking for program /opt/anaconda2/bin/dsymutil...not found Checking for program /Users/markadams/opt/miniconda2/bin/dsymutil...not found Checking for program /opt/miniconda2/bin/dsymutil...not found Checking for program /Users/markadams/opt/miniconda3/bin/dsymutil...not found Checking for program /usr/local/opt/texinfo/bin/dsymutil...not found Checking for program /Users/markadams/homebrew/sbin/dsymutil...not found Checking for program /Users/markadams/homebrew/bin/dsymutil...not found Checking for program /Users/markadams/homebrew/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" child config.utilities.debuggers 0.027134 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/Users/markadams/Codes/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 12 #define PETSC_VERSION_SUBMINOR 4 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.002998 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/Users/markadams/Codes/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000274 ================================================================================ TEST configureGit from config.sourceControl(/Users/markadams/Codes/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /Users/markadams/homebrew/bin/git...not found Checking for program /opt/anaconda2/bin/git...not found Checking for program /opt/anaconda2/bin/git...not found Checking for program /Users/markadams/opt/miniconda2/bin/git...not found Checking for program /opt/miniconda2/bin/git...not found Checking for program /Users/markadams/opt/miniconda3/bin/git...not found Checking for program /usr/local/opt/texinfo/bin/git...not found Checking for program /Users/markadams/homebrew/sbin/git...not found Checking for program /Users/markadams/homebrew/bin/git...not found Checking for program /Users/markadams/homebrew/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 2.21.1 (Apple Git-122.3) child config.sourceControl 0.030387 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/Users/markadams/Codes/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Running Executable WITHOUT threads to time it out Executing: ['git', 'describe', '--match=v*'] stdout: v3.12.4-871-g713946ae56 Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 713946ae566547f62c00f8e6b6d32eda4998edb8 Running Executable WITHOUT threads to time it out Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2020-03-05 00:53:00 +0000 Running Executable WITHOUT threads to time it out Executing: ['git', 'branch'] stdout: Fande-Kong/bug_weight_partition_parmetis barry/2019-12-01/mark/pc-amgx-feature maint mark/feature-cuda-streams mark/feature-picell mark/feature-xgc-interface mark/feature-xgc-interface-aos mark/feature-xgc-interface-rebase mark/feature-xgc-interfaceB mark/fix-cuda-with-gamg-pintocpu mark/fix-viewfromoptions mark/gamg-bugfix-layouttype mark/gamg-eigest-sa-cheby mark/gamg-fix-params mark/gamg-fix-repart-timer mark/gamg-geo-mem-leak mark/gamg-geo-mem-leak_maint3 mark/gamg-optimizations-cpupinning-logicfixes-reducedgridlayout mark/pc-amgx-feature mark/pc-amgx-feature-2 mark/snes-test-ex56-fixes mark/sys-ftn-bugfix * master stefanozampini/hypre-cuda stefanozampini/hypre-cuda-rebased Defined "VERSION_GIT" to ""v3.12.4-871-g713946ae56"" Defined "VERSION_DATE_GIT" to ""2020-03-05 00:53:00 +0000"" Defined "VERSION_BRANCH_GIT" to ""master"" child PETSc.options.petscclone 0.229564 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/Users/markadams/Codes/petsc/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/Users/markadams/Codes/petsc/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: arch-macosx-gnu-g/lib/petsc/conf/configure-hash Deleting configure hash file: arch-macosx-gnu-g/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-macosx-gnu-g/lib/petsc/conf/configure-hash child PETSc.options.arch 0.059064 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/Users/markadams/Codes/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/Users/markadams/Codes/petsc/arch-macosx-gnu-g" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/Users/markadams/Codes/petsc/config/PETSc/options/installDir.py:80) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:80) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/Users/markadams/Codes/petsc/config/PETSc/options/installDir.py:73) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:73) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/Users/markadams/Codes/petsc/config/PETSc/options/installDir.py:57) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:57) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/Users/markadams/Codes/petsc/config/PETSc/options/installDir.py:93) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:93) child PETSc.options.installDir 0.000995 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/Users/markadams/Codes/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/Users/markadams/Codes/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000281 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/Users/markadams/Codes/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000531 ================================================================================ TEST printEnvVariables from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1694) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1694) **** printenv **** GIT_PS1_SHOWDIRTYSTATE=1 XTERM_SHELL=/bin/bash CH_TIMER=FALSE CVS_RSH=ssh LOGNAME=markadams USER=markadams HOME=/Users/markadams PATH=/Users/markadams/homebrew/bin:/opt/anaconda2/bin:/opt/anaconda2/bin:/Users/markadams/opt/miniconda2/bin:/opt/miniconda2/bin:/Users/markadams/opt/miniconda3/bin:/usr/local/opt/texinfo/bin:/Users/markadams/homebrew/sbin:/Users/markadams/homebrew/bin:/Users/markadams/homebrew/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/usr/local/bin::/opt/X11/bin:/usr/local/bin: DBUS_LAUNCHD_SESSION_BUS_SOCKET=/private/tmp/com.apple.launchd.jHJZx1ALlh/unix_domain_listener TERM=xterm SHELL=/bin/bash H5PART_DIR=/Users/markadams/Codes/H5Part-1.6.6/build VERSIONER_PYTHON_VERSION=2.7 SHLVL=2 XGC_PLATFORM=osx PETSC_ARCH=arch-macosx-gnu-g XPC_FLAGS=0x0 CH_OUTPUT_INTERVAL=1000 GIT_PS1_SHOWUPSTREAM=auto WINDOWID=14680077 PETSC_DIR=/Users/markadams/Codes/petsc _=../arch-macosx-gnu-g.py SVN_EDITOR=vi ARCHFLAGS=-arch x86_64 XPC_SERVICE_NAME=0 NETCDF_DIR=/Users/markadams/SFE/NETCDF_INSTALL XTERM_VERSION=XTerm(326) SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.ntQvZpMpyw/Listeners DATAFILESPATH=/Users/markadams/matrices MACHINE=darwin XTERM_LOCALE=C TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ XP_LICENSE_INTERFACE=en0 DISPLAY=/private/tmp/com.apple.launchd.nU27aJRdYF/org.macosforge.xquartz:0 OLDPWD=/Users/markadams CH_TIMER_SAMPLE=60000 __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 PWD=/Users/markadams/Codes/petsc PIP_DOWNLOAD_CACHE=/Users/markadams/.pip/cache SLEPC_DIR=/Users/markadams/Codes/slepc X11_PREFS_DOMAIN=org.macosforge.xquartz.X11 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1701) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1701) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1731) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1731) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1664) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1664) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1685) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1685) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:434) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:434) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:604) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:604) Locate a functional C compiler Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpiicc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicc...not found Unable to find programs ['mpiicc'] providing listing of each search directory to help debug Path provided in Python program ['mpif90', 'hydra_pmi_proxy', 'mpirun', 'mpiexec.hydra', 'mpivars', 'mpif77', 'mpichversion', 'mpicc', 'parkill', 'mpicxx', 'hydra_persist', 'mpiexec', 'mpic++', 'mpifort', 'hydra_nameserver'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpicc...found Defined make macro "CC" to "/usr/local/Cellar/mpich/3.3.2/bin/mpicc" All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc --version stdout: Apple clang version 11.0.0 (clang-1100.0.33.17) Target: x86_64-apple-darwin19.3.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ================================================================================ TEST checkCPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:643) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:643) Locate a functional C preprocessor Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpicc...found Defined make macro "CPP" to "/usr/local/Cellar/mpich/3.3.2/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkCUDACompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:679) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:679) Locate a functional CUDA compiler Checking for program /Users/markadams/homebrew/bin/nvcc...not found Checking for program /opt/anaconda2/bin/nvcc...not found Checking for program /opt/anaconda2/bin/nvcc...not found Checking for program /Users/markadams/opt/miniconda2/bin/nvcc...not found Checking for program /opt/miniconda2/bin/nvcc...not found Checking for program /Users/markadams/opt/miniconda3/bin/nvcc...not found Checking for program /usr/local/opt/texinfo/bin/nvcc...not found Checking for program /Users/markadams/homebrew/sbin/nvcc...not found Checking for program /Users/markadams/homebrew/bin/nvcc...not found Checking for program /Users/markadams/homebrew/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /Library/TeX/texbin/nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program nvcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /Users/markadams/opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda2/bin' Warning accessing /opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/miniconda2/bin' Warning accessing /Users/markadams/opt/miniconda3/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda3/bin' ['texi2pdf', 'pod2texi', 'texindex', 'info', 'texi2dvi', 'pdftexi2dvi', 'texi2any', 'makeinfo', 'install-info'] Warning accessing /Users/markadams/homebrew/sbin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/sbin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 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'open', 'GetFileInfo', 'localedef', 'ruby', 'stringdups', 'htmltree', 'ptargrep5.18', 'git', 'tr', 'lwp-mirror5.18', 'htmltree5.18', 'banner', 'leave', 'jconsole', 'paste', 'RezWack', 'moo-outdated5.18', 'bzip2', 'pod2usage5.18', 'uucp', 'passwd', 'dbiprof5.18', 'package-stash-conflicts5.18', 'uuidgen', 'pl2pm5.18', 'install_name_tool', 'cmpdylib', 'makeinfo', 'php-config', 'zfgrep', 'xpath5.28', 'snfsdefrag', 'zipdetails', 'look', 'findrule5.18', 'col', 'dscacheutil', 'ptar5.18', 'zforce', 'lwp-mirror', 'malloc_history', 'cpio', 'nohup', 'kcc', 'ulimit', 'rails', 'bspatch', 'RezDet', 'hotspot.d', 'cvaffinity', 'gatherheaderdoc', 'ppdi', 'pcap-config', 'avmetareadwrite', 'update_dyld_shared_cache_root_mode', 'gen_bridge_metadata', 'gem', 'opendiff', 'h2xs5.18', 'talk', 'expect', 'jimage', 'lockstat', 'dapptrace', 'install-info', 'xattr', 'w', 'gunzip'] ['cat', 'echo', 'launchctl', 'df', 'pwd', 'test', 'csh', 'wait4path', 'unlink', 'sleep', 'stty', 'date', 'ed', 'expr', 'pax', 'bash', 'kill', 'sh', 'ps', 'link', 'tcsh', 'dd', 'mkdir', 'ksh', 'hostname', 'dash', 'rmdir', 'mv', 'ln', 'ls', 'cp', 'sync', 'zsh', 'chmod', 'rm', '['] ['dsconfigad', 'htdbm', 'netbiosd', 'postlock', 'systemsoundserverd', 'dseditgroup', 'avbdeviced', 'rpcinfo', 'BootCacheControl', 'weakpass_edit', 'periodic', 'accton', 'wfsctl', 'postalias', 'slapacl', 'edquota', 'sndiskmove', 'pdisk', 'amt', 'lpadmin', 'fdisk', 'sysadminctl', 'networksetup', 'envvars', 'ktutil', 'setquota', 'otctl', 'sncfgvalidate', 'php-fpm', 'AppleFileServer', 'dnctl', 'mDNSResponder', 'repquota', 'cupsfilter', 'checkgid', 'uuconv', 'sharing', 'vifs', 'ac', 'racoon', 'dsenableroot', 'xsanctl', 'kdcsetup', 'aslmanager', 'screencapture', 'htdigest', 'rtsold', 'chat', 'DevToolsSecurity', 'logresolve', 'cvdbset', 'KernelEventAgent', 'gpt', 'scutil', 'ioreg', 'ab', 'traceroute6', 'pwd_mkdb', 'sysctl', 'appsleepd', 'sshd', 'mDNSResponderHelper', 'authserver', 'sncfginstall', 'postmulti', 'lsof', 'pkgutil', 'slapindex', 'sc_auth', 'ioclasscount', 'uucico', 'firmwarepasswd', 'rarpd', 'tsig-keygen', 'kadmin.local', 'syslogd', 'taskpolicy', 'filecoordinationd', 'dot_clean', 'PasswordService', 'systemsetup', 'zdump', 'snmpd', 'ndp', 'coreaudiod', 'rpcbind', 'praudit', 'usernoted', 'postkick', 'postcat', 'netstat', 'lpc', 'slapadd', 'krbservicesetup', 'sncfgtemplate', 'slapconfig', 'rtadvd', 'httxt2dbm', 'distnoted', 'mtree', 'cupsdisable', 'lpmove', 'disktool', 'purge', 'rpc.statd', 'cupsctl', 'DirectoryService', 'notifyd', 'klist_cdhashes', 'dtrace', 'kextcache', 'cupsd', 'dbmmanage', 'languagesetup', 'skywalkctl', 'mkpassdb', 'postconf', 'createhomedir', 'ocspd', 'iostat', 'cvdb', 'sa', 'rpc.lockd', 'uuxqt', 'mkfile', 'softwareupdate', 'unsetpassword', 'zic', 'nfs4mapid', 'postsuper', 'htpasswd', 'rotatelogs', 'universalaccessd', 'audit', 'httpd', 'bluetoothaudiod', 'slapauth', 'slappasswd', 'localemanager', 'asr', 'cvupdatefs', 'bless', 'cvgather', 'xscertadmin', 'visudo', 'uusched', 'dsconfigldap', 'smbdiagnose', 'cfprefsd', 'auditd', 'uuchk', 'cvfsck', 'kextfind', 'diskutil', 'cvfsid', 'sso_util', 'vsdbutil', 'ddns-confgen', 'ioalloccount', 'uasysdiagnose', 'dev_mkdb', 'hdik', 'slapdn', 'vpnd', 'postqueue', 'setkey', 'tpctl', 'repairHomePermissions', 'spindump', 'cupsreject', 'traceroute', 'quotaoff', 'newsyslog', 'postfix', 'cvfsdb', 'snmptrapd', 'chroot', 'arp', 'cupsaccept', 'nvram', 'chown', 'mkextunpack', 'sncfgremove', 'sncfgquery', 'postlog', 'installer', 'pppd', 'httpd-wrapper', 'system_profiler', 'fcgistarter', 'bluetoothd', 'slapschema', 'kadmin', 'spray', 'cvversions', 'kextlibs', 'tcpdump', 'xartutil', 'securityd', 'nlcontrol', 'quotaon', 'spctl', 'vipw', 'gssd', 'slaptest', 'automount', 'scselect', 'envvars-std', 'graphicssession', 'ckksctl', 'lpinfo', 'smbd', 'serverinfo', 'cvmkfs', 'postmap', 'postdrop', 'cupsenable', 'cron', 'systemstats', 'bnepd', 'kextstat', 'cvlabel', 'sendmail', 'systemkeychain', 'kcditto', 'slapcat', 'ipconfig', 'auditreduce', 'cvadmin', 'WirelessRadioManagerd', 'apachectl', 'htcacheclean'] ['mount_hfs', 'mount_apfs', 'md5', 'fsck', 'mount_udf', 'quotacheck', 'mount_cd9660', 'ping', 'fsck_exfat', 'mount_exfat', 'fsck_udf', 'shutdown', 'route', 'mount_webdav', 'fsck_hfs', 'nfsd', 'reboot', 'nfsiod', 'fsck_cs', 'fsck_apfs', 'fstyp_msdos', 'disklabel', 'mount_msdos', 'fsck_msdos', 'ifconfig', 'halt', 'mount_9p', 'mount_ntfs', 'rtsol', 'newfs_apfs', 'umount', 'fstyp', 'kextunload', 'mpioutil', 'fstyp_ntfs', 'emond', 'mount_nfs', 'newfs_udf', 'mount_ftp', 'pfctl', 'mknod', 'fstyp_udf', 'dmesg', 'mount', 'fibreconfig', 'fstyp_hfs', 'newfs_hfs', 'dynamic_pager', 'launchd', 'newfs_exfat', 'apfs_hfs_convert', 'nologin', 'mount_afp', 'mount_smbfs', 'ping6', 'kextload', 'mount_cddafs', 'mount_fdesc', 'newfs_msdos', 'mount_acfs', 'mount_devfs'] ['luajittex', 'lollipop', 't1disasm', 'chktex', 'rubikrotation', 'lily-rebuild-pdfs', 'weave', 'mag', 'man', 'ebb', 'prepmx', 'mktexlsr', 'fixmsxpart', 'gsftopk', 'dvibook', 'kpsewhere', 'rumakeindex', 'fontinst', 'cef5conv', 'lacheck', 'httexi', 'lily-image-commands', 'texloganalyser', 'dvilj', 'patgen', 'uptex', 'exceltex', 'pdvitype', 'texconfig-sys', 'xmltex', 'vlna', 'texsis', 'dvipdft', 'pdfjam-pocketmod', 'urlbst', 'pdfcslatex', 'afm2afm', 'cefconv', 'pdfjam-slides6up', 'sjisconv', 'tex2xindy', 'musixtex', 'pdfcsplain', 'opl2ofm', 'de-macro', 'ltx2crossrefxml', 'pdftex', 'dvitodvi', 'gftodvi', 'dviconcat', 'texluajitc', 'dvipng', 'komkindex', 'tex', 'sty2dtx', 'ppltotf', 'yplan', 'eplain', 'eptex', 'lily-glyph-commands', 'htmex', 'texlua', 'htxelatex', 'xasy', 'wovp2ovf', 'dvilualatex', 'cefsconv', 'context', 'platex', 'allec', 'adhocfilelist', 'kpsetool', 'makejvf', 'texdoctk', 'vptovf', 'tex4ht', 'texluajit', 'mtxrunjit', 'uplatex', 'musixflx', 'pfarrei', 'mf', 'latexdiff-vc', 'ttfdump', 'etex', 'fig4latex', 'bibexport', 'ttf2tfm', 'latexmk', 'pmpost', 'pst2pdf', 'pdfbook', 'texconfig-dialog', 'dvilj2p', 'ttf2kotexfont', 'cweave', 'bg5+latex', 'pdfatfi', 'ptex2pdf', 'e2pall', 'kpsewhich', 'upbibtex', 'texdiff', 'mathspic', 'kanji-fontmap-creator', 'kanji-config-updmap', 'asy', 'typeoutfileinfo', 'upmpost', 'pdflatex', 'perltex', 'mkt1font', 'cefslatex', 'cjk-gs-integrate', 'dvitype', 'pdfjadetex', 't1lint', 'jamo-normalize', 'fmtutil-sys', 'wofm2opl', 'dviasm', 'kpsestat', 'pltotf', 'mkindex', 'dvilj6', 'xindy.mem', 'xetex', 'latex', 'ps4pdf', 'multibibliography', 'teckit_compile', 'ttf2afm', 'getmapdl', 'uptftopl', 'contextjit', 'match_parens', 'mkjobtexmf', 'pdf90', 'updvitomp', 'ps2eps', 'pkfix-helper', 'chkweb', 'arlatex', 'pdfpun', 'pdfclose', 'dosepsbin', 'jadetex', 'a2ping', 'bibzbladd', 'ovf2ovp', 'mpost', 'texhash', 'convbkmk', 'thumbpdf', 'pkfix', 'dvihp', 'hbf2gf', 'xindy.run', 'texcount', 'pdf180', 'texmfstart', 'latexrevise', 'cefpdflatex', 'texluac', 'dvicopy', 'lua2dox_filter', 'ctie', 'euptex', 'pdftosrc', 'mf-nowin', 'ctangle', 'omfonts', 't1asm', 'svn-multi', 'mk4ht', 'afm2tfm', 'pdfopen', 'fragmaster', 'pdfnup', 'ebong', 'ctanify', 'pygmentex', 'texdef', 'luatex', 'cslatex', 'synctex', 'texdirflatten', 'gbkpdflatex', 'xdvipdfmx', 'sjispdflatex', 'makeindex', 'dviluatex', 'mkofm', 'dvipdfmx', 'psbook', 'csplain', 'ttftotype42', 'mft', 't1rawafm', 'fmtutil', 'simpdftex', 'depythontex', 'otfinfo', 'latexindent', 'kanji-config-updmap-sys', 'extconv', 'disdvi', 'pdvitomp', 'dvipdfm', 'texliveonfly', 'allneeded', 'htcontext', 't1testpage', 'biber', 'dv2dt', 'xindy', 't1unmac', 'xelatex', 'kpsepath', 'makeglossaries', 'cef5pdflatex', 'autoinst', 'mkpic', 'splitindex', 'repstopdf', 'otangle', 'mfplain', 'latexfileversion', 'latex-git-log', 'inimf', 'latex2man', 'ps2pk', 'htxetex', 'ptftopl', 'ptex', 'gbklatex', 't1binary', 'bibtex', 't1dotlessj', 'mktexpk', 'detex', 'htlatex', 'odvicopy', 'dvidvi', 'extractres', 'extractbb', 'tie', 'tlmgr', 'arara', 'rubibtex', 'dvigif', 'gftype', 'kpseaccess', 'cachepic', 'dtxgen', 'mmafm', 'pktype', 'kpsexpand', 'pktogf', 'msxlint', 't1reencode', 'vftovp', 'ht', 'pdf270', 'mendex', 'ceflatex', 'texlinks', 'pmxchords', 'mptopdf', 'afm2pl', 'mktexmf', 'lamed', 'lualollipop', 'gftopk', 'ulqda', 'dvilj4l', 'pooltype', 'pdfjoin', 'bg5latex', 'aleph', 'wovf2ovp', 'pdfetex', 'dvi2tty', 'ofm2opl', 'pslatex', 'initex', 'latexpand', 'pmx2pdf', 'mkgrkindex', 'mtxrun', 'epsffit', 'listings-ext.sh', 'mktexfmt', 'scor2prt', 'psnup', 'ot2kpx', 'allcm', 'pk2bm', 'dvitomp', 'texindy', 'vpl2vpl', 'luatools', 'cef5latex', 'bg5+pdflatex', 'dvisvgm', 'bg5conv', 'deweb', 'cfftot1', 'dviselect', 'odvitype', 'vpl2ovp', 'otp2ocp', 'latexdiff', 'dt2dv', 'bg5pdflatex', 'mf2pt1', 'psresize', 't1mac', 'epspdf', 'pythontex', 'bibtexu', 'authorindex', 'pdfxmltex', 'pdfjam-slides3up', 'includeres', 't1ascii', 'tangle', 'httex', 'checkcites', 'bibtex8', 'dvi2fax', 'otftotfm', 'cefspdflatex', 'mmpfb', 'pfb2pfa', 'vpe', 'psselect', 'findhyph', 'ovp2ovf', 'utf8mex', 'purifyeps', 'bundledoc', 'mllatex', 'xdvi-xaw', 'sjislatex', 'rungs', 'dvilj4', 'ltxfileinfo', 'texconfig', 'updvitype', 'ltximg', 'dvips', 'pdfjam', 'epstopdf', 'outocp', 'pedigree', 'mkocp', 'kpsereadlink', 'ttf2pk', 'tpic2pdftex', 'psjoin', 'm-tx', 'uppltotf', 'texdoc', 'bbox', 'dvired', 't4ht', 'xdvi', 'ps2frag', 'wopl2ofm', 'devnag', 'ctanupload', 'texexec', 'listbib', 'lualatex', 'pmxab', 'pdfmex', 'tftopl', 'mltex', 'amstex', 'pbibtex', 'pstops', 'mex', 'bibdoiadd', 'pdfflip', 'updmap', 'dvipos', 'luaotfload-tool', 'epspdftk', 'updmap-sys', 'mktextfm', 'texfot', 'rpdfcrop', 'a5toa4', 'installfont-tl', 'pdfcrop', 'xelollipop', 'pdfannotextractor'] ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'c++-9', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'tificc', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'pbmtog3', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'ps2ps', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gcc-ranlib-9', 'gfortran', 'opj_dump', '2to3', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'gs', 'png-fix-itxt', 'pamslice', 'rst2latex.py', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'g++-9', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'jiv', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'x86_64-apple-darwin18-gcc-ranlib-9', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'ps2pdfwr', 'VBoxManage', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'vagrant', 'x86_64-apple-darwin18-gfortran-9', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'pktopbm', 'pgmtolispm', 'fiascotopnm', 'pamdepth', 'VBoxHeadless', 'gsdj', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 'x86_64-apple-darwin18-gcc-9', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'gsnd', 'ppmtopi1', 'ps2pdf13', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'mpivars', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'texdist', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'pnmtosir', 'pambackground', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'python3.7m', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'python3.7m-config', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'VirtualBox', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'mongoose', 'rbox', 'cpp-9', 'lua', 'ps2ascii', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'x86_64-apple-darwin18-c++-9', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'x86_64-apple-darwin18-gcc-nm-9', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'ps2pdf', 'tiffset', 'tclsh', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pf2afm', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'gcov-dump-9', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'pfbtopfa', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'x86_64-apple-darwin18-gcc-ar-9', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'x86_64-apple-darwin18-gcc-9.2.0', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'sndfile-regtest', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'gcc-nm-9', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'gslp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'VBoxAutostart', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'gfortran-9', 'pydoc3.7', 'ppmquant', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'printafm', 'h5diff', 'ppmtopgm', 'pbmtopk', 'gdlib-config', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'ps2ps2', 'h5clear', 'psicc', 'pcretest', 'gslj', 'ps2epsi', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'x86_64-apple-darwin18-g++-9', 'jpgicc', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'ppmtopj', 'pampop9', 'tclselect', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'rst2xml.py', 'pelican-themes', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'git-clang-format', 'pyvenv', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'pnmtoplainpnm', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'imgcmp', 'pcregrep', 'tiff2rgba', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'pelican-import', 'VBoxVRDP', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] Warning accessing gives errors: [Errno 2] No such file or directory: '' ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'c++-9', 'pbmtoescp2', 'ppmcie', 'libtool', 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'xzegrep', 'gsettings', 'ps2pdfwr', 'VBoxManage', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'vagrant', 'x86_64-apple-darwin18-gfortran-9', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'pktopbm', 'pgmtolispm', 'fiascotopnm', 'pamdepth', 'VBoxHeadless', 'gsdj', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 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'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'VirtualBox', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'mongoose', 'rbox', 'cpp-9', 'lua', 'ps2ascii', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'x86_64-apple-darwin18-c++-9', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'x86_64-apple-darwin18-gcc-nm-9', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'ps2pdf', 'tiffset', 'tclsh', 'pamflip', 'pfmtopam', 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'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'ppmtopj', 'pampop9', 'tclselect', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'rst2xml.py', 'pelican-themes', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'git-clang-format', 'pyvenv', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'pnmtoplainpnm', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'imgcmp', 'pcregrep', 'tiff2rgba', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'pelican-import', 'VBoxVRDP', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] Warning accessing gives errors: [Errno 2] No such file or directory: '' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:719) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:719) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:818) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:818) Locate a functional Cxx compiler Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of each search directory to help debug Path provided in Python program ['mpif90', 'hydra_pmi_proxy', 'mpirun', 'mpiexec.hydra', 'mpivars', 'mpif77', 'mpichversion', 'mpicc', 'parkill', 'mpicxx', 'hydra_persist', 'mpiexec', 'mpic++', 'mpifort', 'hydra_nameserver'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of each search directory to help debug Path provided in Python program ['mpif90', 'hydra_pmi_proxy', 'mpirun', 'mpiexec.hydra', 'mpivars', 'mpif77', 'mpichversion', 'mpicc', 'parkill', 'mpicxx', 'hydra_persist', 'mpiexec', 'mpic++', 'mpifort', 'hydra_nameserver'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpiicpc...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/mpiicpc...not found Unable to find programs ['mpiicpc'] providing listing of each search directory to help debug Path provided in Python program ['mpif90', 'hydra_pmi_proxy', 'mpirun', 'mpiexec.hydra', 'mpivars', 'mpif77', 'mpichversion', 'mpicc', 'parkill', 'mpicxx', 'hydra_persist', 'mpiexec', 'mpic++', 'mpifort', 'hydra_nameserver'] Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpicxx...found Defined make macro "CXX" to "/usr/local/Cellar/mpich/3.3.2/bin/mpicxx" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx --version stdout: Apple clang version 11.0.0 (clang-1100.0.33.17) Target: x86_64-apple-darwin19.3.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:859) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:859) Locate a functional Cxx preprocessor Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpicxx...found Defined make macro "CXXPP" to "/usr/local/Cellar/mpich/3.3.2/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkFortranCompiler from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:960) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:960) Locate a functional Fortran compiler ================================================================================ TEST checkLargeFileIO from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1150) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1150) ================================================================================ TEST checkArchiver from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1249) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1249) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V Running Executable WITHOUT threads to time it out Executing: ar -V Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /Users/markadams/homebrew/bin/ar...not found Checking for program /opt/anaconda2/bin/ar...not found Checking for program /opt/anaconda2/bin/ar...not found Checking for program /Users/markadams/opt/miniconda2/bin/ar...not found Checking for program /opt/miniconda2/bin/ar...not found Checking for program /Users/markadams/opt/miniconda3/bin/ar...not found Checking for program /usr/local/opt/texinfo/bin/ar...not found Checking for program /Users/markadams/homebrew/sbin/ar...not found Checking for program /Users/markadams/homebrew/bin/ar...not found Checking for program /Users/markadams/homebrew/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /Users/markadams/homebrew/bin/ranlib...not found Checking for program /opt/anaconda2/bin/ranlib...not found Checking for program /opt/anaconda2/bin/ranlib...not found Checking for program /Users/markadams/opt/miniconda2/bin/ranlib...not found Checking for program /opt/miniconda2/bin/ranlib...not found Checking for program /Users/markadams/opt/miniconda3/bin/ranlib...not found Checking for program /usr/local/opt/texinfo/bin/ranlib...not found Checking for program /Users/markadams/homebrew/sbin/ranlib...not found Checking for program /Users/markadams/homebrew/bin/ranlib...not found Checking for program /Users/markadams/homebrew/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/libconf1.a /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1363) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1363) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking shared linker /usr/local/Cellar/mpich/3.3.2/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpicc...found Defined make macro "LD_SHARED" to "/usr/local/Cellar/mpich/3.3.2/bin/mpicc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -dynamiclib -single_module /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid C linker flag -dynamiclib -single_module Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -undefined dynamic_lookup /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid C linker flag -undefined dynamic_lookup Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid C linker flag -multiply_defined suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: clang: error: unknown argument: '-no_compact_unwind' Rejecting linker flag -no_compact_unwind due to nonzero status from link Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -L/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -lconftest Using shared linker /usr/local/Cellar/mpich/3.3.2/bin/mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST checkLinkerMac from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1437) TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1437) Tests some Apple Mac specific linker flags Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined,suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined -Wl,suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid C linker flag -Wl,-commons,use_dylibs Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid C linker flag -Wl,-search_paths_first Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid C linker flag -Wl,-no_compact_unwind Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined,suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-commons,use_dylibs Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-search_paths_first Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-no_compact_unwind Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST checkPIC from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1097) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1475) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1475) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-rpath,/Users/markadams/Codes/petsc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/Users/markadams/Codes/petsc Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-rpath,/Users/markadams/Codes/petsc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/Users/markadams/Codes/petsc ================================================================================ TEST checkLibC from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1510) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1510) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1556) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1556) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Checking dynamic linker /usr/local/Cellar/mpich/3.3.2/bin/mpicc using flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/usr/local/Cellar/mpich/3.3.2/bin/mpicc" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -ldl Valid C linker flag -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -ldl Using dynamic linker /usr/local/Cellar/mpich/3.3.2/bin/mpicc with flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] and library extension dylib ================================================================================ TEST output from config.setCompilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/setCompilers.py:1605) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1605) Output module data as defines and substitutions Substituting "CC" with "/usr/local/Cellar/mpich/3.3.2/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/usr/local/Cellar/mpich/3.3.2/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/usr/local/Cellar/mpich/3.3.2/bin/mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/usr/local/Cellar/mpich/3.3.2/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" child config.setCompilers 9.809443 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/options/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/options/sharedLibraries.py:52) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:52) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(2).dylib" Defined make macro "SL_LINKER_FUNCTION" to "-dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/options/sharedLibraries.py:94) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:94) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/Users/markadams/Codes/petsc/config/PETSc/options/sharedLibraries.py:100) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:100) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.012195 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/Users/markadams/Codes/petsc/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.001949 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "C_VERSION" to "Apple clang version 11.0.0 (clang-1100.0.33.17)" Defined make macro "MPICC_SHOW" to "clang -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.3.2/include -L/usr/local/Cellar/mpich/3.3.2/lib -lmpi -lpmpi" Trying C compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -fno-stack-check Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fno-stack-check Trying C compiler flag -mfp16-format=ieee Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to clang: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -Qunused-arguments Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Qunused-arguments Trying C compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Trying C compiler flag -g -O0 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g -O0 Defined make macro "Cxx_VERSION" to "Apple clang version 11.0.0 (clang-1100.0.33.17)" Defined make macro "MPICXX_SHOW" to "clang++ -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.3.2/include -L/usr/local/Cellar/mpich/3.3.2/lib -lmpicxx -lmpi -lpmpi" Trying Cxx compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fno-stack-check Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fno-stack-check Trying Cxx compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g -O0 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g -O0 child config.compilerFlags 2.105269 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt ================================================================================ TEST checkRestrict from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:138) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:138) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -V All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:391) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:391) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:108) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:402) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:402) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:202) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:202) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1342) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1342) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -MMD -MP /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ================================================================================ TEST checkC99Flag from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1387) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1387) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: Defined "HAVE_C99" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt ================================================================================ TEST checkRestrict from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:138) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:138) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -V Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:421) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:421) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:123) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:123) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:533) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:533) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::_DeallocateCaller::__do_call(void*) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_call_unexpected", referenced from: std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::ostreambuf_iterator >::ostreambuf_iterator(std::__1::basic_ostream >&) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::vector >::~vector() in confc.o std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o std::__1::ostreambuf_iterator >::ostreambuf_iterator(std::__1::basic_ostream >&) in confc.o ... ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc --help | head -n 500 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/conftest.o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers/confc.o -lc++ -ldl compilers: C++ requires -lc++ to link with C compiler ================================================================================ TEST checkCxxDialect from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:449) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:449) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX11 with flag: Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc:7:32: error: unknown type name 'constexpr' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc:7:42: warning: variable templates are a C++14 extension [-Wc++14-extensions] template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc:7:43: error: expected ';' at end of declaration template constexpr T Cubed( T x ) { return x*x*x; } ^ ; /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc:7:51: error: unknown type name 'T' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc:7:44: error: C++ requires a type specifier for all declarations template constexpr T Cubed( T x ) { return x*x*x; } ^ 1 warning and 4 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc:7:32: error: unknown type name 'constexpr' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc:7:42: warning: variable templates are a C++14 extension [-Wc++14-extensions] template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc:7:43: error: expected ';' at end of declaration template constexpr T Cubed( T x ) { return x*x*x; } ^ ; /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc:7:51: error: unknown type name 'T' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc:7:44: error: C++ requires a type specifier for all declarations template constexpr T Cubed( T x ) { return x*x*x; } ^ 1 warning and 4 errors generated. PETSc Error: No output file produced checkCxxDialect: checking CXX11 with flag: -std=c++11 Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -std=c++11 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -V ================================================================================ TEST setupFrameworkCompilers from config.compilers(/Users/markadams/Codes/petsc/config/BuildSystem/config/compilers.py:1452) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1452) child config.compilers 4.172783 ================================================================================ TEST configureClosure from config.utilities.closure(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure/conftest.c:6:7: warning: unused variable 'closure' [-Wunused-variable] int (^closure)(int);; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure/conftest.o -lc++ -ldl Defined "HAVE_CLOSURE" to "1" child config.utilities.closure 0.306301 child config.compilersFortran 0.000033 ================================================================================ TEST checkStdC from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:8:8: warning: if statement has empty body [-Wempty-body] if (pi); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:8:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found#include ^~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found#include ^~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found#include ^~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found#include ^~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Direct.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~1 error generated.: ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~1 error generated.: ================================================================================ TEST checkRecursiveMacros from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 6.119772 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest.c:4:60: error: use of undeclared identifier '_SC_LEVEL1_DCACHE_LINESIZE'; did you mean 'getconf_LEVEL1_DCACHE_LINESIZE'? long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^~~~~~~~~~~~~~~~~~~~~~~~~~ getconf_LEVEL1_DCACHE_LINESIZE /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest.c:4:6: note: 'getconf_LEVEL1_DCACHE_LINESIZE' declared here long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.746709 ================================================================================ TEST check_struct_sigaction from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:43) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:43) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:49) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:49) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/i386/_types.h:46:33: note: '__int64_t' declared here typedef long long __int64_t; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:55) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:55) Checks for types associated with sizes, such as size_t. Checking for type: size_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:65) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:65) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:60) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:60) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:71) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:71) Checks for pid_t, and defines it if necessary Checking for type: pid_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:75) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:75) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:82) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:82) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -lc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:93) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:93) Check for complex numbers in namespace std Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -std=c++11 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.cc:6:22: warning: unused variable 'x' [-Wunused-variable] std::complex x; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -lc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkConst from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:104) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:104) Checks for working const, and if not found defines it to empty string Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:24:16: warning: if statement has empty body [-Wempty-body] if (zero.x); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:24:16: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:25:14: warning: if statement has empty body [-Wempty-body] if (x[0]); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:25:14: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:31:14: warning: if statement has empty body [-Wempty-body] if (*s); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:31:14: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:52:15: warning: if statement has empty body [-Wempty-body] if (foo); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:52:15: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:46:20: warning: variable 'b' is uninitialized when used here [-Wuninitialized] struct s *b; b->j = 5; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:46:18: note: initialize the variable 'b' to silence this warning struct s *b; b->j = 5; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:30:8: warning: variable 't' is uninitialized when used here [-Wuninitialized] *t++ = 0; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c:27:14: note: initialize the variable 't' to silence this warning char *t; ^ = 0 6 warnings generated. Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkVisibility from config.types(/Users/markadams/Codes/petsc/config/BuildSystem/config/types.py:194) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:194) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -std=c++11 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" child config.types 3.381239 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/Users/markadams/Codes/petsc/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.000538 ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkMath from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl CheckMath: using math library [] ================================================================================ TEST checkMathErf from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathLgamma from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:301) TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:314) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:322) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:331) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:347) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -ldl -lc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" child config.libraries 3.589911 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/Users/markadams/Codes/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [ADIOI_BGL_Open] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/Users/markadams/Codes/petsc/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.616848 child config.atomics 0.000011 ================================================================================ TEST checkSysinfo from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkVPrintf from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -std=c++11 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:6:25: error: assigning to 'int' from incompatible type 'void' int ierr; void *p; ierr = free(p); return 0; ^ ~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd _pipe getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen drand48 socket popen getrusage _mkdir time stricmp] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:16:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:16:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:19:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:19:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:44:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:44:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char _pipe(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [rand getdomainname realpath dlsym bzero getwd uname usleep dlclose gethostname clock] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:17:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:17:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char getwd(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Checking for functions [dlerror fork getpagesize gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:18:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:18:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); char fork(); char getpagesize(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_DLERROR" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [snprintf] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:13:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c:13:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_pipe] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_lseek] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [sleep] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [lseek] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [sbreak] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [memalign] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [getcwd] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [PXFGETARG] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_mkdir] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [stricmp] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkMmap from config.functions(/Users/markadams/Codes/petsc/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 9.322037 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize/conftest.c:38:18: warning: implicit declaration of function 'getpagesize' is invalid in C99 [-Wimplicit-function-declaration] f2 = getpagesize() * ((double)(temp2.ru_maxrss-temp1.ru_maxrss))/(4.0*ARRAYSIZE); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize/conftest.c:58:2: error: expected '}' } ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize/conftest.c:12:12: note: to match this '{' int main() { ^ 1 warning and 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link output from getrusage() child config.utilities.getResidentSetSize 0.147077 child config.utilities.fortranCommandLine 0.000013 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: 'sysctl.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.c:7:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t mset; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.c:8:1: warning: implicit declaration of function 'CPU_ZERO' is invalid in C99 [-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros/conftest.c:8:11: error: use of undeclared identifier 'mset' CPU_ZERO(&mset);; ^ 1 warning and 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } child config.utilities.featureTestMacros 0.554521 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c:21:7: warning: incompatible pointer types initializing 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an expression of type 'int (char *, int)' [-Wincompatible-pointer-types] int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -std=c++11 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.cc:21:7: error: cannot initialize a variable of type 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an lvalue of type 'int (char *, int)': type mismatch at 2nd parameter ('size_t' (aka 'unsigned long') vs 'int') int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -std=c++11 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -lc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -std=c++11 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing/conftest.o -lc++ -ldl child config.utilities.missing 4.453392 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/Users/markadams/Codes/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found#include ^~~~~~~~~~1 error generated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found#include ^~~~~~~~~1 error generated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/confdefs.h" 1 # 2 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 # 1 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conffix.h" 1 # 3 "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c" 2 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering:/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found#include ^~~~~~~~~~~~~~~~~1 error generated.: child config.utilities.FPTrap 0.228545 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/Users/markadams/Codes/petsc/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNORMAL" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNAN" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/Users/markadams/Codes/petsc/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c:4:10: fatal error: 'quadmath.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 1.251154 ================================================================================ TEST configureMkdir from config.programs(/Users/markadams/Codes/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /Users/markadams/homebrew/bin/mkdir...not found Checking for program /opt/anaconda2/bin/mkdir...not found Checking for program /opt/anaconda2/bin/mkdir...not found Checking for program /Users/markadams/opt/miniconda2/bin/mkdir...not found Checking for program /opt/miniconda2/bin/mkdir...not found Checking for program /Users/markadams/opt/miniconda3/bin/mkdir...not found Checking for program /usr/local/opt/texinfo/bin/mkdir...not found Checking for program /Users/markadams/homebrew/sbin/mkdir...not found Checking for program /Users/markadams/homebrew/bin/mkdir...not found Checking for program /Users/markadams/homebrew/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Running Executable WITHOUT threads to time it out Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/Users/markadams/Codes/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /Users/markadams/homebrew/bin/autoreconf...not found Checking for program /opt/anaconda2/bin/autoreconf...not found Checking for program /opt/anaconda2/bin/autoreconf...not found Checking for program /Users/markadams/opt/miniconda2/bin/autoreconf...not found Checking for program /opt/miniconda2/bin/autoreconf...not found Checking for program /Users/markadams/opt/miniconda3/bin/autoreconf...not found Checking for program /usr/local/opt/texinfo/bin/autoreconf...not found Checking for program /Users/markadams/homebrew/sbin/autoreconf...not found Checking for program /Users/markadams/homebrew/bin/autoreconf...not found Checking for program /Users/markadams/homebrew/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...found All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.programs Running Executable WITHOUT threads to time it out Executing: ['/usr/local/bin/autoreconf'] autoreconf test successful! Checking for program /Users/markadams/homebrew/bin/libtoolize...not found Checking for program /opt/anaconda2/bin/libtoolize...not found Checking for program /opt/anaconda2/bin/libtoolize...not found Checking for program /Users/markadams/opt/miniconda2/bin/libtoolize...not found Checking for program /opt/miniconda2/bin/libtoolize...not found Checking for program /Users/markadams/opt/miniconda3/bin/libtoolize...not found Checking for program /usr/local/opt/texinfo/bin/libtoolize...not found Checking for program /Users/markadams/homebrew/sbin/libtoolize...not found Checking for program /Users/markadams/homebrew/bin/libtoolize...not found Checking for program /Users/markadams/homebrew/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/Users/markadams/Codes/petsc/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /Users/markadams/homebrew/bin/sh...not found Checking for program /opt/anaconda2/bin/sh...not found Checking for program /opt/anaconda2/bin/sh...not found Checking for program /Users/markadams/opt/miniconda2/bin/sh...not found Checking for program /opt/miniconda2/bin/sh...not found Checking for program /Users/markadams/opt/miniconda3/bin/sh...not found Checking for program /usr/local/opt/texinfo/bin/sh...not found Checking for program /Users/markadams/homebrew/sbin/sh...not found Checking for program /Users/markadams/homebrew/bin/sh...not found Checking for program /Users/markadams/homebrew/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /Users/markadams/homebrew/bin/sed...not found Checking for program /opt/anaconda2/bin/sed...not found Checking for program /opt/anaconda2/bin/sed...not found Checking for program /Users/markadams/opt/miniconda2/bin/sed...not found Checking for program /opt/miniconda2/bin/sed...not found Checking for program /Users/markadams/opt/miniconda3/bin/sed...not found Checking for program /usr/local/opt/texinfo/bin/sed...not found Checking for program /Users/markadams/homebrew/sbin/sed...not found Checking for program /Users/markadams/homebrew/bin/sed...not found Checking for program /Users/markadams/homebrew/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Running Executable WITHOUT threads to time it out Executing: /usr/bin/sed -i s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.programs/sed1" Rejected SEDINPLACE cmd: /usr/bin/sed -i Running Executable WITHOUT threads to time it out Executing: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i "" Defined make macro "SEDINPLACE" to "/usr/bin/sed -i """ Checking for program /Users/markadams/homebrew/bin/mv...not found Checking for program /opt/anaconda2/bin/mv...not found Checking for program /opt/anaconda2/bin/mv...not found Checking for program /Users/markadams/opt/miniconda2/bin/mv...not found Checking for program /opt/miniconda2/bin/mv...not found Checking for program /Users/markadams/opt/miniconda3/bin/mv...not found Checking for program /usr/local/opt/texinfo/bin/mv...not found Checking for program /Users/markadams/homebrew/sbin/mv...not found Checking for program /Users/markadams/homebrew/bin/mv...not found Checking for program /Users/markadams/homebrew/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /Users/markadams/homebrew/bin/cp...not found Checking for program /opt/anaconda2/bin/cp...not found Checking for program /opt/anaconda2/bin/cp...not found Checking for program /Users/markadams/opt/miniconda2/bin/cp...not found Checking for program /opt/miniconda2/bin/cp...not found Checking for program /Users/markadams/opt/miniconda3/bin/cp...not found Checking for program /usr/local/opt/texinfo/bin/cp...not found Checking for program /Users/markadams/homebrew/sbin/cp...not found Checking for program /Users/markadams/homebrew/bin/cp...not found Checking for program /Users/markadams/homebrew/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /Users/markadams/homebrew/bin/grep...not found Checking for program /opt/anaconda2/bin/grep...not found Checking for program /opt/anaconda2/bin/grep...not found Checking for program /Users/markadams/opt/miniconda2/bin/grep...not found Checking for program /opt/miniconda2/bin/grep...not found Checking for program /Users/markadams/opt/miniconda3/bin/grep...not found Checking for program /usr/local/opt/texinfo/bin/grep...not found Checking for program /Users/markadams/homebrew/sbin/grep...not found Checking for program /Users/markadams/homebrew/bin/grep...not found Checking for program /Users/markadams/homebrew/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /Users/markadams/homebrew/bin/rm...not found Checking for program /opt/anaconda2/bin/rm...not found Checking for program /opt/anaconda2/bin/rm...not found Checking for program /Users/markadams/opt/miniconda2/bin/rm...not found Checking for program /opt/miniconda2/bin/rm...not found Checking for program /Users/markadams/opt/miniconda3/bin/rm...not found Checking for program /usr/local/opt/texinfo/bin/rm...not found Checking for program /Users/markadams/homebrew/sbin/rm...not found Checking for program /Users/markadams/homebrew/bin/rm...not found Checking for program /Users/markadams/homebrew/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /Users/markadams/homebrew/bin/diff...not found Checking for program /opt/anaconda2/bin/diff...not found Checking for program /opt/anaconda2/bin/diff...not found Checking for program /Users/markadams/opt/miniconda2/bin/diff...not found Checking for program /opt/miniconda2/bin/diff...not found Checking for program /Users/markadams/opt/miniconda3/bin/diff...not found Checking for program /usr/local/opt/texinfo/bin/diff...not found Checking for program /Users/markadams/homebrew/sbin/diff...not found Checking for program /Users/markadams/homebrew/bin/diff...not found Checking for program /Users/markadams/homebrew/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Running Executable WITHOUT threads to time it out Executing: "/usr/bin/diff" -w "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.programs/diff1" "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Defined make macro "PYTHON" to "/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python" Checking for program /Users/markadams/homebrew/bin/m4...not found Checking for program /opt/anaconda2/bin/m4...not found Checking for program /opt/anaconda2/bin/m4...not found Checking for program /Users/markadams/opt/miniconda2/bin/m4...not found Checking for program /opt/miniconda2/bin/m4...not found Checking for program /Users/markadams/opt/miniconda3/bin/m4...not found Checking for program /usr/local/opt/texinfo/bin/m4...not found Checking for program /Users/markadams/homebrew/sbin/m4...not found Checking for program /Users/markadams/homebrew/bin/m4...not found Checking for program /Users/markadams/homebrew/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 3.561643 ================================================================================ TEST configureMake from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/make.py:87) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:87) Check Guesses for GNU make Running Executable WITHOUT threads to time it out Executing: gmake --version GNUMake check failed: Could not execute "['gmake --version']": /bin/sh: gmake: command not found Running Executable WITHOUT threads to time it out Executing: make --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for i386-apple-darwin11.3.0 =============================================================================== ***** WARNING: You have an older version of Gnu make, it will work, but may not support all the parallel testing options. You can install the latest Gnu make with your package manager, such as brew or macports, or use the --download-make option to get the latest Gnu make ***** =============================================================================== Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /opt/anaconda2/bin/make...not found Checking for program /opt/anaconda2/bin/make...not found Checking for program /Users/markadams/opt/miniconda2/bin/make...not found Checking for program /opt/miniconda2/bin/make...not found Checking for program /Users/markadams/opt/miniconda3/bin/make...not found Checking for program /usr/local/opt/texinfo/bin/make...not found Checking for program /Users/markadams/homebrew/sbin/make...not found Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /Users/markadams/homebrew/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST setupGNUMake from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/make.py:121) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:121) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST configureMakeNP from config.packages.make(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/make.py:168) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:168) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "MAKE_TEST_NP" to "4" Defined make macro "MAKE_LOAD" to "12.0" Defined make macro "NPMAX" to "8" child config.packages.make 0.665602 ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000765 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.012739 ================================================================================ TEST checkDependencies from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:617) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:617) ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] Contents: ['INSTALL_RECEIPT.json', 'bin', '.brew', 'CHANGES', 'include', 'README', 'lib', 'COPYRIGHT', 'share'] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in User specified root directory MPI: ['/usr/local/Cellar/mpich/3.3.2/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/Cellar/mpich/3.3.2/include'] Found header files [] in ['/usr/local/Cellar/mpich/3.3.2/include'] Checking for headers ['mpi.h'] in User specified root directory MPI: ['/usr/local/Cellar/mpich/3.3.2/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/usr/local/Cellar/mpich/3.3.2/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/Cellar/mpich/3.3.2/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in ['/usr/local/Cellar/mpich/3.3.2/include'] ================================================================================ TEST checkMPIDistro from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:478) TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:478) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:4:25: error: use of undeclared identifier 'I_MPI_VERSION' const char *mpich_ver = I_MPI_VERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'I_MPI_NUMVERSION' int mpich_ver = I_MPI_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MVAPICH2_NUMVERSION' int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30302300" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin ================================================================================ TEST configureMPI2 from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:253) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:253) Check for functions added to the interface in MPI-2 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:35: warning: if statement has empty body [-Wempty-body] int flag;if (MPI_Finalized(&flag)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:35: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:71: warning: if statement has empty body [-Wempty-body] if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:71: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:7:121: warning: if statement has empty body [-Wempty-body] if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:7:121: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:131: warning: if statement has empty body [-Wempty-body] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:131: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:63: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:63: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:49: warning: if statement has empty body [-Wempty-body] if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:49: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:102: warning: if statement has empty body [-Wempty-body] char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:102: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:298) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:298) Check for functions added to the interface in MPI-3 Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:7:112: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:7:112: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:8:111: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:8:111: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:9:82: warning: if statement has empty body [-Wempty-body] if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:9:82: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:7:96: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:7:96: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:8:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:8:110: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:9:96: warning: if statement has empty body [-Wempty-body] if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:9:96: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:10:109: warning: if statement has empty body [-Wempty-body] if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:10:109: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:11:97: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:11:97: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:12:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:12:110: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:13:96: warning: if statement has empty body [-Wempty-body] if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:13:96: note: put the semicolon on a separate line to silence this warning 7 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:8:145: warning: if statement has empty body [-Wempty-body] if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:8:145: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:9:89: warning: if statement has empty body [-Wempty-body] if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:9:89: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:10:95: warning: if statement has empty body [-Wempty-body] if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:10:95: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:104: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:104: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:99: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:84: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_RGET" to "1" ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:175) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:175) Checking for location of mpiexec Checking for program /usr/local/Cellar/mpich/3.3.2/bin/mpiexec...found Running Executable with threads to time it out at 60 Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpiexec -n 1 printenv stdout: GIT_PS1_SHOWDIRTYSTATE=1 PIP_DOWNLOAD_CACHE=/Users/markadams/.pip/cache SHELL=/bin/bash TERM=xterm CH_TIMER=FALSE TMPDIR=/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/ PETSC_ARCH=arch-macosx-gnu-g WINDOWID=14680077 USER=markadams SVN_EDITOR=vi XTERM_SHELL=/bin/bash CH_TIMER_SAMPLE=60000 XP_LICENSE_INTERFACE=en0 SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.ntQvZpMpyw/Listeners __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 PATH=/Users/markadams/homebrew/bin:/opt/anaconda2/bin:/opt/anaconda2/bin:/Users/markadams/opt/miniconda2/bin:/opt/miniconda2/bin:/Users/markadams/opt/miniconda3/bin:/usr/local/opt/texinfo/bin:/Users/markadams/homebrew/sbin:/Users/markadams/homebrew/bin:/Users/markadams/homebrew/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/usr/local/bin::/opt/X11/bin:/usr/local/bin: VERSIONER_PYTHON_VERSION=2.7 _=/usr/local/Cellar/mpich/3.3.2/bin/mpiexec DATAFILESPATH=/Users/markadams/matrices XGC_PLATFORM=osx PWD=/Users/markadams/Codes/petsc DBUS_LAUNCHD_SESSION_BUS_SOCKET=/private/tmp/com.apple.launchd.jHJZx1ALlh/unix_domain_listener XPC_FLAGS=0x0 MACHINE=darwin XPC_SERVICE_NAME=0 XTERM_VERSION=XTerm(326) XTERM_LOCALE=C SHLVL=3 HOME=/Users/markadams CH_OUTPUT_INTERVAL=1000 NETCDF_DIR=/Users/markadams/SFE/NETCDF_INSTALL SLEPC_DIR=/Users/markadams/Codes/slepc LOGNAME=markadams CVS_RSH=ssh GIT_PS1_SHOWUPSTREAM=auto ARCHFLAGS=-arch x86_64 DISPLAY=/private/tmp/com.apple.launchd.nU27aJRdYF/org.macosforge.xquartz:0 H5PART_DIR=/Users/markadams/Codes/H5Part-1.6.6/build X11_PREFS_DOMAIN=org.macosforge.xquartz.X11 PETSC_DIR=/Users/markadams/Codes/petsc HYDI_CONTROL_FD=10 GFORTRAN_UNBUFFERED_PRECONNECTED=y MPIR_CVAR_CH3_INTERFACE_HOSTNAME=MarksMac-221.local MPI_LOCALNRANKS=1 MPI_LOCALRANKID=0 PMI_RANK=0 PMI_FD=6 PMI_SIZE=1 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "MPIR_CVAR_CH3" Defined make macro "MPIEXEC" to "/usr/local/Cellar/mpich/3.3.2/bin/mpiexec" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest to see if it can be run Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpiexec -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpiexec -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest ================================================================================ TEST configureMPITypes from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:345) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:345) Checking for MPI Datatype handles Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest to see if it can be run Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpiexec -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpiexec -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest to see if it can be run Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpiexec -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpiexec -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest to see if it can be run Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpiexec -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpiexec -n 1 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" ================================================================================ TEST SGIMPICheck from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:406) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:406) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: __check_MPI_SGI_barrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:416) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:416) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -std=c++11 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl ================================================================================ TEST FortranMPICheck from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:432) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:432) Make sure fortran include [mpif.h] and library symbols are found ================================================================================ TEST configureIO from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:454) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:454) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:7:48: warning: if statement has empty body [-Wempty-body] if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:7:48: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:12:54: warning: if statement has empty body [-Wempty-body] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:12:54: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:14:102: warning: if statement has empty body [-Wempty-body] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:14:102: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:18:61: warning: if statement has empty body [-Wempty-body] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:18:61: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:20:101: warning: if statement has empty body [-Wempty-body] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:20:101: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:22:74: warning: if statement has empty body [-Wempty-body] if (MPI_File_close(&fh)); ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:22:74: note: put the semicolon on a separate line to silence this warning /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:18:55: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:17:14: note: initialize the variable 'info' to silence this warning MPI_Info info; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:12:24: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:9:61: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:18:27: warning: variable 'disp' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:16:65: note: initialize the variable 'disp' to silence this warning MPI_Offset disp; ^ = 0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:14:76: warning: variable 'buf' is uninitialized when used here [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~~ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:10:10: note: initialize the variable 'buf' to silence this warning void *buf; ^ = 0 10 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:558) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:558) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ================================================================================ TEST PetscArchMPICheck from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/MPI.py:592) TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:592) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPIX_Iallreduce", referenced from: __check_MPIX_Iallreduce in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [MPIX_Ibarrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPIX_Ibarrier", referenced from: __check_MPIX_Ibarrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_NAMED;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPIDI_CH3I_sock_set", referenced from: __check_MPIDI_CH3I_sock_set in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPIDI_CH3I_sock_fixed_nbc_progress", referenced from: __check_MPIDI_CH3I_sock_fixed_nbc_progress in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkVersion from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:985) TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:985) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:919) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:919) By default we don't care about checking if the library is shared child config.packages.MPI 13.478333 ================================================================================ TEST alternateConfigureLibrary from config.packages.zstd(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001261 ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.000863 ================================================================================ TEST configureLibrary from config.packages.valgrind(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:861) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:861) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: [] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: [] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['valgrind/valgrind.h'] in [] All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Defined "HAVE_VALGRIND" to "1" child config.packages.valgrind 0.264132 ================================================================================ TEST alternateConfigureLibrary from config.packages.ssl(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001067 ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.000648 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.001005 ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.000676 ================================================================================ TEST alternateConfigureLibrary from config.packages.radau5(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.000644 ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.000566 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.000558 ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.000513 ================================================================================ TEST alternateConfigureLibrary from config.packages.muparser(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.000590 Defined "PYTHON_EXE" to ""/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python"" Running Executable WITHOUT threads to time it out Executing: /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import Cython" Running Executable WITHOUT threads to time it out Executing: /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python -c "import numpy" child config.packages.python 0.259336 ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/petsc4py.py:97) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:97) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] child config.packages.petsc4py 0.002320 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/mpi4py.py:74) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.000986 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.000617 ================================================================================ TEST alternateConfigureLibrary from config.packages.memkind(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000605 ================================================================================ TEST alternateConfigureLibrary from config.packages.libmesh(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/libmesh.py:76) TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001228 ================================================================================ TEST alternateConfigureLibrary from config.packages.moose(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.000624 ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.000582 ================================================================================ TEST alternateConfigureLibrary from config.packages.libceed(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.000637 Checking for program /Users/markadams/homebrew/bin/lgrind...not found Checking for program /opt/anaconda2/bin/lgrind...not found Checking for program /opt/anaconda2/bin/lgrind...not found Checking for program /Users/markadams/opt/miniconda2/bin/lgrind...not found Checking for program /opt/miniconda2/bin/lgrind...not found Checking for program /Users/markadams/opt/miniconda3/bin/lgrind...not found Checking for program /usr/local/opt/texinfo/bin/lgrind...not found Checking for program /Users/markadams/homebrew/sbin/lgrind...not found Checking for program /Users/markadams/homebrew/bin/lgrind...not found Checking for program /Users/markadams/homebrew/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /Library/TeX/texbin/lgrind...not found Checking for program /opt/X11/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program lgrind...not found Checking for program /opt/X11/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program lgrind...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/lgrind...not found Unable to find programs ['lgrind'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /Users/markadams/opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda2/bin' Warning accessing /opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/miniconda2/bin' Warning accessing /Users/markadams/opt/miniconda3/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda3/bin' ['texi2pdf', 'pod2texi', 'texindex', 'info', 'texi2dvi', 'pdftexi2dvi', 'texi2any', 'makeinfo', 'install-info'] Warning accessing /Users/markadams/homebrew/sbin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/sbin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'c++-9', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'tificc', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'pbmtog3', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'ps2ps', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gcc-ranlib-9', 'gfortran', 'opj_dump', '2to3', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'gs', 'png-fix-itxt', 'pamslice', 'rst2latex.py', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'g++-9', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'jiv', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'x86_64-apple-darwin18-gcc-ranlib-9', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'ps2pdfwr', 'VBoxManage', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'vagrant', 'x86_64-apple-darwin18-gfortran-9', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'pktopbm', 'pgmtolispm', 'fiascotopnm', 'pamdepth', 'VBoxHeadless', 'gsdj', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 'x86_64-apple-darwin18-gcc-9', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'gsnd', 'ppmtopi1', 'ps2pdf13', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'mpivars', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'texdist', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'pnmtosir', 'pambackground', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'python3.7m', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'python3.7m-config', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'VirtualBox', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'mongoose', 'rbox', 'cpp-9', 'lua', 'ps2ascii', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'x86_64-apple-darwin18-c++-9', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'x86_64-apple-darwin18-gcc-nm-9', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'ps2pdf', 'tiffset', 'tclsh', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pf2afm', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'gcov-dump-9', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'pfbtopfa', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'x86_64-apple-darwin18-gcc-ar-9', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'x86_64-apple-darwin18-gcc-9.2.0', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'sndfile-regtest', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'gcc-nm-9', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'gslp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'VBoxAutostart', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'gfortran-9', 'pydoc3.7', 'ppmquant', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'printafm', 'h5diff', 'ppmtopgm', 'pbmtopk', 'gdlib-config', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'ps2ps2', 'h5clear', 'psicc', 'pcretest', 'gslj', 'ps2epsi', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'x86_64-apple-darwin18-g++-9', 'jpgicc', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'ppmtopj', 'pampop9', 'tclselect', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'rst2xml.py', 'pelican-themes', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'git-clang-format', 'pyvenv', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'pnmtoplainpnm', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'imgcmp', 'pcregrep', 'tiff2rgba', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'pelican-import', 'VBoxVRDP', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'c++-9', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'tificc', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'pbmtog3', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'ps2ps', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gcc-ranlib-9', 'gfortran', 'opj_dump', '2to3', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'gs', 'png-fix-itxt', 'pamslice', 'rst2latex.py', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'g++-9', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 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'sdp', 'shasum5.28', 'showmount', 'taskinfo', 'ar', 'perldoc5.18', 'who', 'mktemp', 'unifdef', 'yaa', 'cut', 'imptrace', 'pack200', 'net-server5.28', 'ippeveprinter', 'hdid', 'dc', 'biff', 'perl5.28', 'mailx', 'odutil', 'jsadebugd', 'xargs', 'texi2dvi', 'debinhex5.18.pl', 'priclass.d', 'pod2latex5.18', 'ptardiff5.28', 'topsysproc', 'nl', 'dbilogstrip5.18', 'view', 'jjs', 'spfquery', 'sample', 'bg', 'lipo', 'seeksize.d', 'eyapp', 'clang++', 'setuids.d', 'shlock', 'symbols', 'afmtodit', 'gzexe', 'mkdep', 'a2p5.18', 'genstrings', 'at', 'what', 'sdx', 'm4', 'asa', 'iptab', 'format-sql5.18', 'swiftc', 'nfsstat', 'svnversion', 'uupick', 'ipcs', 'pod2readme5.18', 'pluginkit', 'as', 'MvMac', 'net-server5.18', 'fold', 'gnumake', 'perl5.18', 'log', 'tmutil', 'checknr', 'certtool', 'python2.7', 'vmmap', 'shasum5.18', 'h2xs', 'csrutil', 'shar', 'perldoc5.28', 'ldappasswd', 'lkbib', 'ResMerger', 'bitesize.d', 'db_checkpoint', 'funzip', 'power_report.sh', 'iosnoop', 'atsutil', 'osalang', 'dirname', 'pod2man', 'enc2xs', 'treereg5.28', 'moo-outdated', 'xgettext5.28.pl', 'iopending', 'infokey', 'ncal', 'cpan5.28', 'chflags', 'find2perl5.18', 'fg', 'rwbypid.d', 'jmap', 'dscl', 'leaks', 'splain5.18', 'nbdst', 'mnthome', 'jshell', 'dsexport', 'mdimport', 'id', 'procsystime', 'cd', 'quota', 'uuto', 'fuser', 'dsimport', 'csgather', 'json_pp5.28', 'git-shell', 'ldapsearch', 'command', 'snmp-bridge-mib', 'egrep', 'notifyutil', 'cc', 'dsmemberutil', 'podselect', 'pod2html5.28', 'grn', 'psed', 'whereis', 'tccutil', 'a2p', 'find', 'jstat', 'zcat', 'ip2cc5.18', 'unifdefall', 'nroff', 'pridist.d', 'size', 'timesyncanalyse', 'libnetcfg5.28', 'uustat', 'snmpwalk', 'llvm-g++', 'scp', 'instmodsh5.18', 'tnameserv', 'true', 'afinfo', 'hidutil', 'ldapadd', 'pwpolicy', 'profiles', 'yacc', 'kswitch', 'xcodebuild', 'jobs', 'c89', 'sudo', 'bioutil', 'splain5.28', 'tmdiagnose', 'plockstat', 'xgettext5.18.pl', 'serialver', 'afida', 'pgrep', 'yes', 'lessecho', 'sdiff', 'afscexpand', 'treereg5.18', 'cpan5.18', 'db_deadlock', 'ldapcompare', 'unexpand', 'git-upload-pack', 'ssh-copy-id', 'grolj4', 'fixproc', 'debinhex.pl', 'lorder', 'pod2html5.18', 'ranlib', 'javadoc', 'tput', 'fgrep', 'json_pp5.18', 'sigdist.d', 'ppdhtml', 'libnetcfg5.18', 'auval', 'erb', 'dappprof', 'openssl', 'instmodsh5.28', 'drutil', 'jinfo', 'ip2cc5.28', 'splain', 'pmset', 'xmlcatalog', 'zcmp', 'ptargrep5.28', 'lwp-mirror5.28', 'rwsnoop', 'jstatd', 'htmltree5.28', 'lpr', 'layerutil', 'snmptest', 'mib2c-update', 'grog', 'creatbyproc.d', 'pstruct', 'fdesetup', 'flex', 'hostinfo', 'jcontrol', 'MergePef', 'lpstat', 'SetFile', 'pl2pm5.28', 'pod2html', 'rebase', 'tar', 'rdoc', 'uptime', 's2p', 'pidpersec.d', 'xpath5.18', 'schemagen', 'moo-outdated5.28', 'pod2usage5.28', 'dbiprof5.28', 'cvcp', 'package-stash-conflicts5.28', 'false', 'zegrep', 'memory_pressure', 'uncompress', 'lwp-request', 'ncurses5.4-config', 'findrule5.28', 'sampleproc', 'db_recover', 'ptar5.28', 'h2xs5.28', 'nmedit', 'filebyproc.d', 'bison', 'tclsh8.5', 'jdeps', 'productbuild', 'zipinfo', 'diffstat', 'login', 'db_dump', 'smtpd.py', 'cpuctl', 'cpu_profiler.d', 'which', 'bundler', 'iopattern', 'finger', 'mig', 'sntp', 'klist', 'open', 'GetFileInfo', 'localedef', 'ruby', 'stringdups', 'htmltree', 'ptargrep5.18', 'git', 'tr', 'lwp-mirror5.18', 'htmltree5.18', 'banner', 'leave', 'jconsole', 'paste', 'RezWack', 'moo-outdated5.18', 'bzip2', 'pod2usage5.18', 'uucp', 'passwd', 'dbiprof5.18', 'package-stash-conflicts5.18', 'uuidgen', 'pl2pm5.18', 'install_name_tool', 'cmpdylib', 'makeinfo', 'php-config', 'zfgrep', 'xpath5.28', 'snfsdefrag', 'zipdetails', 'look', 'findrule5.18', 'col', 'dscacheutil', 'ptar5.18', 'zforce', 'lwp-mirror', 'malloc_history', 'cpio', 'nohup', 'kcc', 'ulimit', 'rails', 'bspatch', 'RezDet', 'hotspot.d', 'cvaffinity', 'gatherheaderdoc', 'ppdi', 'pcap-config', 'avmetareadwrite', 'update_dyld_shared_cache_root_mode', 'gen_bridge_metadata', 'gem', 'opendiff', 'h2xs5.18', 'talk', 'expect', 'jimage', 'lockstat', 'dapptrace', 'install-info', 'xattr', 'w', 'gunzip'] ['cat', 'echo', 'launchctl', 'df', 'pwd', 'test', 'csh', 'wait4path', 'unlink', 'sleep', 'stty', 'date', 'ed', 'expr', 'pax', 'bash', 'kill', 'sh', 'ps', 'link', 'tcsh', 'dd', 'mkdir', 'ksh', 'hostname', 'dash', 'rmdir', 'mv', 'ln', 'ls', 'cp', 'sync', 'zsh', 'chmod', 'rm', '['] ['dsconfigad', 'htdbm', 'netbiosd', 'postlock', 'systemsoundserverd', 'dseditgroup', 'avbdeviced', 'rpcinfo', 'BootCacheControl', 'weakpass_edit', 'periodic', 'accton', 'wfsctl', 'postalias', 'slapacl', 'edquota', 'sndiskmove', 'pdisk', 'amt', 'lpadmin', 'fdisk', 'sysadminctl', 'networksetup', 'envvars', 'ktutil', 'setquota', 'otctl', 'sncfgvalidate', 'php-fpm', 'AppleFileServer', 'dnctl', 'mDNSResponder', 'repquota', 'cupsfilter', 'checkgid', 'uuconv', 'sharing', 'vifs', 'ac', 'racoon', 'dsenableroot', 'xsanctl', 'kdcsetup', 'aslmanager', 'screencapture', 'htdigest', 'rtsold', 'chat', 'DevToolsSecurity', 'logresolve', 'cvdbset', 'KernelEventAgent', 'gpt', 'scutil', 'ioreg', 'ab', 'traceroute6', 'pwd_mkdb', 'sysctl', 'appsleepd', 'sshd', 'mDNSResponderHelper', 'authserver', 'sncfginstall', 'postmulti', 'lsof', 'pkgutil', 'slapindex', 'sc_auth', 'ioclasscount', 'uucico', 'firmwarepasswd', 'rarpd', 'tsig-keygen', 'kadmin.local', 'syslogd', 'taskpolicy', 'filecoordinationd', 'dot_clean', 'PasswordService', 'systemsetup', 'zdump', 'snmpd', 'ndp', 'coreaudiod', 'rpcbind', 'praudit', 'usernoted', 'postkick', 'postcat', 'netstat', 'lpc', 'slapadd', 'krbservicesetup', 'sncfgtemplate', 'slapconfig', 'rtadvd', 'httxt2dbm', 'distnoted', 'mtree', 'cupsdisable', 'lpmove', 'disktool', 'purge', 'rpc.statd', 'cupsctl', 'DirectoryService', 'notifyd', 'klist_cdhashes', 'dtrace', 'kextcache', 'cupsd', 'dbmmanage', 'languagesetup', 'skywalkctl', 'mkpassdb', 'postconf', 'createhomedir', 'ocspd', 'iostat', 'cvdb', 'sa', 'rpc.lockd', 'uuxqt', 'mkfile', 'softwareupdate', 'unsetpassword', 'zic', 'nfs4mapid', 'postsuper', 'htpasswd', 'rotatelogs', 'universalaccessd', 'audit', 'httpd', 'bluetoothaudiod', 'slapauth', 'slappasswd', 'localemanager', 'asr', 'cvupdatefs', 'bless', 'cvgather', 'xscertadmin', 'visudo', 'uusched', 'dsconfigldap', 'smbdiagnose', 'cfprefsd', 'auditd', 'uuchk', 'cvfsck', 'kextfind', 'diskutil', 'cvfsid', 'sso_util', 'vsdbutil', 'ddns-confgen', 'ioalloccount', 'uasysdiagnose', 'dev_mkdb', 'hdik', 'slapdn', 'vpnd', 'postqueue', 'setkey', 'tpctl', 'repairHomePermissions', 'spindump', 'cupsreject', 'traceroute', 'quotaoff', 'newsyslog', 'postfix', 'cvfsdb', 'snmptrapd', 'chroot', 'arp', 'cupsaccept', 'nvram', 'chown', 'mkextunpack', 'sncfgremove', 'sncfgquery', 'postlog', 'installer', 'pppd', 'httpd-wrapper', 'system_profiler', 'fcgistarter', 'bluetoothd', 'slapschema', 'kadmin', 'spray', 'cvversions', 'kextlibs', 'tcpdump', 'xartutil', 'securityd', 'nlcontrol', 'quotaon', 'spctl', 'vipw', 'gssd', 'slaptest', 'automount', 'scselect', 'envvars-std', 'graphicssession', 'ckksctl', 'lpinfo', 'smbd', 'serverinfo', 'cvmkfs', 'postmap', 'postdrop', 'cupsenable', 'cron', 'systemstats', 'bnepd', 'kextstat', 'cvlabel', 'sendmail', 'systemkeychain', 'kcditto', 'slapcat', 'ipconfig', 'auditreduce', 'cvadmin', 'WirelessRadioManagerd', 'apachectl', 'htcacheclean'] ['mount_hfs', 'mount_apfs', 'md5', 'fsck', 'mount_udf', 'quotacheck', 'mount_cd9660', 'ping', 'fsck_exfat', 'mount_exfat', 'fsck_udf', 'shutdown', 'route', 'mount_webdav', 'fsck_hfs', 'nfsd', 'reboot', 'nfsiod', 'fsck_cs', 'fsck_apfs', 'fstyp_msdos', 'disklabel', 'mount_msdos', 'fsck_msdos', 'ifconfig', 'halt', 'mount_9p', 'mount_ntfs', 'rtsol', 'newfs_apfs', 'umount', 'fstyp', 'kextunload', 'mpioutil', 'fstyp_ntfs', 'emond', 'mount_nfs', 'newfs_udf', 'mount_ftp', 'pfctl', 'mknod', 'fstyp_udf', 'dmesg', 'mount', 'fibreconfig', 'fstyp_hfs', 'newfs_hfs', 'dynamic_pager', 'launchd', 'newfs_exfat', 'apfs_hfs_convert', 'nologin', 'mount_afp', 'mount_smbfs', 'ping6', 'kextload', 'mount_cddafs', 'mount_fdesc', 'newfs_msdos', 'mount_acfs', 'mount_devfs'] ['luajittex', 'lollipop', 't1disasm', 'chktex', 'rubikrotation', 'lily-rebuild-pdfs', 'weave', 'mag', 'man', 'ebb', 'prepmx', 'mktexlsr', 'fixmsxpart', 'gsftopk', 'dvibook', 'kpsewhere', 'rumakeindex', 'fontinst', 'cef5conv', 'lacheck', 'httexi', 'lily-image-commands', 'texloganalyser', 'dvilj', 'patgen', 'uptex', 'exceltex', 'pdvitype', 'texconfig-sys', 'xmltex', 'vlna', 'texsis', 'dvipdft', 'pdfjam-pocketmod', 'urlbst', 'pdfcslatex', 'afm2afm', 'cefconv', 'pdfjam-slides6up', 'sjisconv', 'tex2xindy', 'musixtex', 'pdfcsplain', 'opl2ofm', 'de-macro', 'ltx2crossrefxml', 'pdftex', 'dvitodvi', 'gftodvi', 'dviconcat', 'texluajitc', 'dvipng', 'komkindex', 'tex', 'sty2dtx', 'ppltotf', 'yplan', 'eplain', 'eptex', 'lily-glyph-commands', 'htmex', 'texlua', 'htxelatex', 'xasy', 'wovp2ovf', 'dvilualatex', 'cefsconv', 'context', 'platex', 'allec', 'adhocfilelist', 'kpsetool', 'makejvf', 'texdoctk', 'vptovf', 'tex4ht', 'texluajit', 'mtxrunjit', 'uplatex', 'musixflx', 'pfarrei', 'mf', 'latexdiff-vc', 'ttfdump', 'etex', 'fig4latex', 'bibexport', 'ttf2tfm', 'latexmk', 'pmpost', 'pst2pdf', 'pdfbook', 'texconfig-dialog', 'dvilj2p', 'ttf2kotexfont', 'cweave', 'bg5+latex', 'pdfatfi', 'ptex2pdf', 'e2pall', 'kpsewhich', 'upbibtex', 'texdiff', 'mathspic', 'kanji-fontmap-creator', 'kanji-config-updmap', 'asy', 'typeoutfileinfo', 'upmpost', 'pdflatex', 'perltex', 'mkt1font', 'cefslatex', 'cjk-gs-integrate', 'dvitype', 'pdfjadetex', 't1lint', 'jamo-normalize', 'fmtutil-sys', 'wofm2opl', 'dviasm', 'kpsestat', 'pltotf', 'mkindex', 'dvilj6', 'xindy.mem', 'xetex', 'latex', 'ps4pdf', 'multibibliography', 'teckit_compile', 'ttf2afm', 'getmapdl', 'uptftopl', 'contextjit', 'match_parens', 'mkjobtexmf', 'pdf90', 'updvitomp', 'ps2eps', 'pkfix-helper', 'chkweb', 'arlatex', 'pdfpun', 'pdfclose', 'dosepsbin', 'jadetex', 'a2ping', 'bibzbladd', 'ovf2ovp', 'mpost', 'texhash', 'convbkmk', 'thumbpdf', 'pkfix', 'dvihp', 'hbf2gf', 'xindy.run', 'texcount', 'pdf180', 'texmfstart', 'latexrevise', 'cefpdflatex', 'texluac', 'dvicopy', 'lua2dox_filter', 'ctie', 'euptex', 'pdftosrc', 'mf-nowin', 'ctangle', 'omfonts', 't1asm', 'svn-multi', 'mk4ht', 'afm2tfm', 'pdfopen', 'fragmaster', 'pdfnup', 'ebong', 'ctanify', 'pygmentex', 'texdef', 'luatex', 'cslatex', 'synctex', 'texdirflatten', 'gbkpdflatex', 'xdvipdfmx', 'sjispdflatex', 'makeindex', 'dviluatex', 'mkofm', 'dvipdfmx', 'psbook', 'csplain', 'ttftotype42', 'mft', 't1rawafm', 'fmtutil', 'simpdftex', 'depythontex', 'otfinfo', 'latexindent', 'kanji-config-updmap-sys', 'extconv', 'disdvi', 'pdvitomp', 'dvipdfm', 'texliveonfly', 'allneeded', 'htcontext', 't1testpage', 'biber', 'dv2dt', 'xindy', 't1unmac', 'xelatex', 'kpsepath', 'makeglossaries', 'cef5pdflatex', 'autoinst', 'mkpic', 'splitindex', 'repstopdf', 'otangle', 'mfplain', 'latexfileversion', 'latex-git-log', 'inimf', 'latex2man', 'ps2pk', 'htxetex', 'ptftopl', 'ptex', 'gbklatex', 't1binary', 'bibtex', 't1dotlessj', 'mktexpk', 'detex', 'htlatex', 'odvicopy', 'dvidvi', 'extractres', 'extractbb', 'tie', 'tlmgr', 'arara', 'rubibtex', 'dvigif', 'gftype', 'kpseaccess', 'cachepic', 'dtxgen', 'mmafm', 'pktype', 'kpsexpand', 'pktogf', 'msxlint', 't1reencode', 'vftovp', 'ht', 'pdf270', 'mendex', 'ceflatex', 'texlinks', 'pmxchords', 'mptopdf', 'afm2pl', 'mktexmf', 'lamed', 'lualollipop', 'gftopk', 'ulqda', 'dvilj4l', 'pooltype', 'pdfjoin', 'bg5latex', 'aleph', 'wovf2ovp', 'pdfetex', 'dvi2tty', 'ofm2opl', 'pslatex', 'initex', 'latexpand', 'pmx2pdf', 'mkgrkindex', 'mtxrun', 'epsffit', 'listings-ext.sh', 'mktexfmt', 'scor2prt', 'psnup', 'ot2kpx', 'allcm', 'pk2bm', 'dvitomp', 'texindy', 'vpl2vpl', 'luatools', 'cef5latex', 'bg5+pdflatex', 'dvisvgm', 'bg5conv', 'deweb', 'cfftot1', 'dviselect', 'odvitype', 'vpl2ovp', 'otp2ocp', 'latexdiff', 'dt2dv', 'bg5pdflatex', 'mf2pt1', 'psresize', 't1mac', 'epspdf', 'pythontex', 'bibtexu', 'authorindex', 'pdfxmltex', 'pdfjam-slides3up', 'includeres', 't1ascii', 'tangle', 'httex', 'checkcites', 'bibtex8', 'dvi2fax', 'otftotfm', 'cefspdflatex', 'mmpfb', 'pfb2pfa', 'vpe', 'psselect', 'findhyph', 'ovp2ovf', 'utf8mex', 'purifyeps', 'bundledoc', 'mllatex', 'xdvi-xaw', 'sjislatex', 'rungs', 'dvilj4', 'ltxfileinfo', 'texconfig', 'updvitype', 'ltximg', 'dvips', 'pdfjam', 'epstopdf', 'outocp', 'pedigree', 'mkocp', 'kpsereadlink', 'ttf2pk', 'tpic2pdftex', 'psjoin', 'm-tx', 'uppltotf', 'texdoc', 'bbox', 'dvired', 't4ht', 'xdvi', 'ps2frag', 'wopl2ofm', 'devnag', 'ctanupload', 'texexec', 'listbib', 'lualatex', 'pmxab', 'pdfmex', 'tftopl', 'mltex', 'amstex', 'pbibtex', 'pstops', 'mex', 'bibdoiadd', 'pdfflip', 'updmap', 'dvipos', 'luaotfload-tool', 'epspdftk', 'updmap-sys', 'mktextfm', 'texfot', 'rpdfcrop', 'a5toa4', 'installfont-tl', 'pdfcrop', 'xelollipop', 'pdfannotextractor'] ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'c++-9', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'tificc', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'pbmtog3', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'ps2ps', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gcc-ranlib-9', 'gfortran', 'opj_dump', '2to3', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'gs', 'png-fix-itxt', 'pamslice', 'rst2latex.py', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'g++-9', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'jiv', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'x86_64-apple-darwin18-gcc-ranlib-9', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'ps2pdfwr', 'VBoxManage', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'vagrant', 'x86_64-apple-darwin18-gfortran-9', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'pktopbm', 'pgmtolispm', 'fiascotopnm', 'pamdepth', 'VBoxHeadless', 'gsdj', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 'x86_64-apple-darwin18-gcc-9', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'gsnd', 'ppmtopi1', 'ps2pdf13', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'mpivars', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'texdist', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'pnmtosir', 'pambackground', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'python3.7m', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'python3.7m-config', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'VirtualBox', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'mongoose', 'rbox', 'cpp-9', 'lua', 'ps2ascii', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'x86_64-apple-darwin18-c++-9', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'x86_64-apple-darwin18-gcc-nm-9', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'ps2pdf', 'tiffset', 'tclsh', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pf2afm', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'gcov-dump-9', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'pfbtopfa', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'x86_64-apple-darwin18-gcc-ar-9', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'x86_64-apple-darwin18-gcc-9.2.0', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'sndfile-regtest', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'gcc-nm-9', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'gslp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'VBoxAutostart', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'gfortran-9', 'pydoc3.7', 'ppmquant', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'printafm', 'h5diff', 'ppmtopgm', 'pbmtopk', 'gdlib-config', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'ps2ps2', 'h5clear', 'psicc', 'pcretest', 'gslj', 'ps2epsi', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'x86_64-apple-darwin18-g++-9', 'jpgicc', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'ppmtopj', 'pampop9', 'tclselect', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'rst2xml.py', 'pelican-themes', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'git-clang-format', 'pyvenv', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'pnmtoplainpnm', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'imgcmp', 'pcregrep', 'tiff2rgba', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'pelican-import', 'VBoxVRDP', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] Warning accessing gives errors: [Errno 2] No such file or directory: '' ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'c++-9', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'tificc', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'pbmtog3', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'ps2ps', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gcc-ranlib-9', 'gfortran', 'opj_dump', '2to3', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'gs', 'png-fix-itxt', 'pamslice', 'rst2latex.py', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'g++-9', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'jiv', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'x86_64-apple-darwin18-gcc-ranlib-9', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'ps2pdfwr', 'VBoxManage', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'vagrant', 'x86_64-apple-darwin18-gfortran-9', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'pktopbm', 'pgmtolispm', 'fiascotopnm', 'pamdepth', 'VBoxHeadless', 'gsdj', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 'x86_64-apple-darwin18-gcc-9', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'gsnd', 'ppmtopi1', 'ps2pdf13', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'mpivars', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'texdist', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'pnmtosir', 'pambackground', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'python3.7m', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'python3.7m-config', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'VirtualBox', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'mongoose', 'rbox', 'cpp-9', 'lua', 'ps2ascii', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'x86_64-apple-darwin18-c++-9', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'x86_64-apple-darwin18-gcc-nm-9', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'ps2pdf', 'tiffset', 'tclsh', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pf2afm', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'gcov-dump-9', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'pfbtopfa', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'x86_64-apple-darwin18-gcc-ar-9', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'x86_64-apple-darwin18-gcc-9.2.0', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'sndfile-regtest', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'gcc-nm-9', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'gslp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'VBoxAutostart', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'gfortran-9', 'pydoc3.7', 'ppmquant', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'printafm', 'h5diff', 'ppmtopgm', 'pbmtopk', 'gdlib-config', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'ps2ps2', 'h5clear', 'psicc', 'pcretest', 'gslj', 'ps2epsi', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'x86_64-apple-darwin18-g++-9', 'jpgicc', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'ppmtopj', 'pampop9', 'tclselect', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'rst2xml.py', 'pelican-themes', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'git-clang-format', 'pyvenv', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'pnmtoplainpnm', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'imgcmp', 'pcregrep', 'tiff2rgba', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'pelican-import', 'VBoxVRDP', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] Warning accessing gives errors: [Errno 2] No such file or directory: '' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.packages.lgrind 0.006484 ================================================================================ TEST alternateConfigureLibrary from config.packages.slepc(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/slepc.py:88) TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:88) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.001284 ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.000723 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.000704 ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.000618 ================================================================================ TEST alternateConfigureLibrary from config.packages.egads(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.000626 ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.000718 ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.000659 ================================================================================ TEST locateC2html from config.packages.c2html(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program /Users/markadams/homebrew/bin/c2html...not found Checking for program /opt/anaconda2/bin/c2html...not found Checking for program /opt/anaconda2/bin/c2html...not found Checking for program /Users/markadams/opt/miniconda2/bin/c2html...not found Checking for program /opt/miniconda2/bin/c2html...not found Checking for program /Users/markadams/opt/miniconda3/bin/c2html...not found Checking for program /usr/local/opt/texinfo/bin/c2html...not found Checking for program /Users/markadams/homebrew/sbin/c2html...not found Checking for program /Users/markadams/homebrew/bin/c2html...not found Checking for program /Users/markadams/homebrew/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /Library/TeX/texbin/c2html...not found Checking for program /opt/X11/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program c2html...not found Checking for program /opt/X11/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program c2html...not found Checking for program /Users/markadams/Codes/petsc/lib/petsc/bin/win32fe/c2html...not found Unable to find programs ['c2html'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /opt/anaconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/anaconda2/bin' Warning accessing /Users/markadams/opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda2/bin' Warning accessing /opt/miniconda2/bin gives errors: [Errno 2] No such file or directory: '/opt/miniconda2/bin' Warning accessing /Users/markadams/opt/miniconda3/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/opt/miniconda3/bin' ['texi2pdf', 'pod2texi', 'texindex', 'info', 'texi2dvi', 'pdftexi2dvi', 'texi2any', 'makeinfo', 'install-info'] Warning accessing /Users/markadams/homebrew/sbin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/sbin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' Warning accessing /Users/markadams/homebrew/bin gives errors: [Errno 2] No such file or directory: '/Users/markadams/homebrew/bin' ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'c++-9', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'tificc', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'pbmtog3', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'ps2ps', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gcc-ranlib-9', 'gfortran', 'opj_dump', '2to3', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'gs', 'png-fix-itxt', 'pamslice', 'rst2latex.py', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'g++-9', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'jiv', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'x86_64-apple-darwin18-gcc-ranlib-9', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'ps2pdfwr', 'VBoxManage', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'vagrant', 'x86_64-apple-darwin18-gfortran-9', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'pktopbm', 'pgmtolispm', 'fiascotopnm', 'pamdepth', 'VBoxHeadless', 'gsdj', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 'x86_64-apple-darwin18-gcc-9', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'gsnd', 'ppmtopi1', 'ps2pdf13', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'mpivars', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'texdist', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'pnmtosir', 'pambackground', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'python3.7m', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'python3.7m-config', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'VirtualBox', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'mongoose', 'rbox', 'cpp-9', 'lua', 'ps2ascii', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'x86_64-apple-darwin18-c++-9', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'x86_64-apple-darwin18-gcc-nm-9', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'ps2pdf', 'tiffset', 'tclsh', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pf2afm', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'gcov-dump-9', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'pfbtopfa', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'x86_64-apple-darwin18-gcc-ar-9', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'x86_64-apple-darwin18-gcc-9.2.0', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'sndfile-regtest', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'gcc-nm-9', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'gslp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'VBoxAutostart', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'gfortran-9', 'pydoc3.7', 'ppmquant', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'printafm', 'h5diff', 'ppmtopgm', 'pbmtopk', 'gdlib-config', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'ps2ps2', 'h5clear', 'psicc', 'pcretest', 'gslj', 'ps2epsi', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'x86_64-apple-darwin18-g++-9', 'jpgicc', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'ppmtopj', 'pampop9', 'tclselect', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'rst2xml.py', 'pelican-themes', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'git-clang-format', 'pyvenv', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'pnmtoplainpnm', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'imgcmp', 'pcregrep', 'tiff2rgba', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'pelican-import', 'VBoxVRDP', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'c++-9', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'tificc', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'pbmtog3', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'ps2ps', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gcc-ranlib-9', 'gfortran', 'opj_dump', '2to3', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'gs', 'png-fix-itxt', 'pamslice', 'rst2latex.py', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'g++-9', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'jiv', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'x86_64-apple-darwin18-gcc-ranlib-9', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'ps2pdfwr', 'VBoxManage', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'vagrant', 'x86_64-apple-darwin18-gfortran-9', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'pktopbm', 'pgmtolispm', 'fiascotopnm', 'pamdepth', 'VBoxHeadless', 'gsdj', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 'x86_64-apple-darwin18-gcc-9', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'gsnd', 'ppmtopi1', 'ps2pdf13', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'mpivars', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'texdist', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'pnmtosir', 'pambackground', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'python3.7m', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'python3.7m-config', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'VirtualBox', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'mongoose', 'rbox', 'cpp-9', 'lua', 'ps2ascii', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'x86_64-apple-darwin18-c++-9', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'x86_64-apple-darwin18-gcc-nm-9', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'ps2pdf', 'tiffset', 'tclsh', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pf2afm', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'gcov-dump-9', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'pfbtopfa', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'x86_64-apple-darwin18-gcc-ar-9', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'x86_64-apple-darwin18-gcc-9.2.0', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'sndfile-regtest', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'gcc-nm-9', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'gslp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'VBoxAutostart', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'gfortran-9', 'pydoc3.7', 'ppmquant', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'printafm', 'h5diff', 'ppmtopgm', 'pbmtopk', 'gdlib-config', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'ps2ps2', 'h5clear', 'psicc', 'pcretest', 'gslj', 'ps2epsi', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'x86_64-apple-darwin18-g++-9', 'jpgicc', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'ppmtopj', 'pampop9', 'tclselect', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'rst2xml.py', 'pelican-themes', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'git-clang-format', 'pyvenv', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'pnmtoplainpnm', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'imgcmp', 'pcregrep', 'tiff2rgba', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'pelican-import', 'VBoxVRDP', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] ['uux', 'cpan', 'BuildStrings', 'loads.d', 'write', 'indent', 'bzip2recover', 'hdiutil', 'top', 'javah', 'pstruct5.18', 'tee', 'binhex5.18.pl', 'xip', 'wsimport', 'bzfgrep', 'qlmanage', 'snmptranslate', 'split', 'chsh', 'stty.pl', 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'package-stash-conflicts5.18', 'uuidgen', 'pl2pm5.18', 'install_name_tool', 'cmpdylib', 'makeinfo', 'php-config', 'zfgrep', 'xpath5.28', 'snfsdefrag', 'zipdetails', 'look', 'findrule5.18', 'col', 'dscacheutil', 'ptar5.18', 'zforce', 'lwp-mirror', 'malloc_history', 'cpio', 'nohup', 'kcc', 'ulimit', 'rails', 'bspatch', 'RezDet', 'hotspot.d', 'cvaffinity', 'gatherheaderdoc', 'ppdi', 'pcap-config', 'avmetareadwrite', 'update_dyld_shared_cache_root_mode', 'gen_bridge_metadata', 'gem', 'opendiff', 'h2xs5.18', 'talk', 'expect', 'jimage', 'lockstat', 'dapptrace', 'install-info', 'xattr', 'w', 'gunzip'] ['cat', 'echo', 'launchctl', 'df', 'pwd', 'test', 'csh', 'wait4path', 'unlink', 'sleep', 'stty', 'date', 'ed', 'expr', 'pax', 'bash', 'kill', 'sh', 'ps', 'link', 'tcsh', 'dd', 'mkdir', 'ksh', 'hostname', 'dash', 'rmdir', 'mv', 'ln', 'ls', 'cp', 'sync', 'zsh', 'chmod', 'rm', '['] ['dsconfigad', 'htdbm', 'netbiosd', 'postlock', 'systemsoundserverd', 'dseditgroup', 'avbdeviced', 'rpcinfo', 'BootCacheControl', 'weakpass_edit', 'periodic', 'accton', 'wfsctl', 'postalias', 'slapacl', 'edquota', 'sndiskmove', 'pdisk', 'amt', 'lpadmin', 'fdisk', 'sysadminctl', 'networksetup', 'envvars', 'ktutil', 'setquota', 'otctl', 'sncfgvalidate', 'php-fpm', 'AppleFileServer', 'dnctl', 'mDNSResponder', 'repquota', 'cupsfilter', 'checkgid', 'uuconv', 'sharing', 'vifs', 'ac', 'racoon', 'dsenableroot', 'xsanctl', 'kdcsetup', 'aslmanager', 'screencapture', 'htdigest', 'rtsold', 'chat', 'DevToolsSecurity', 'logresolve', 'cvdbset', 'KernelEventAgent', 'gpt', 'scutil', 'ioreg', 'ab', 'traceroute6', 'pwd_mkdb', 'sysctl', 'appsleepd', 'sshd', 'mDNSResponderHelper', 'authserver', 'sncfginstall', 'postmulti', 'lsof', 'pkgutil', 'slapindex', 'sc_auth', 'ioclasscount', 'uucico', 'firmwarepasswd', 'rarpd', 'tsig-keygen', 'kadmin.local', 'syslogd', 'taskpolicy', 'filecoordinationd', 'dot_clean', 'PasswordService', 'systemsetup', 'zdump', 'snmpd', 'ndp', 'coreaudiod', 'rpcbind', 'praudit', 'usernoted', 'postkick', 'postcat', 'netstat', 'lpc', 'slapadd', 'krbservicesetup', 'sncfgtemplate', 'slapconfig', 'rtadvd', 'httxt2dbm', 'distnoted', 'mtree', 'cupsdisable', 'lpmove', 'disktool', 'purge', 'rpc.statd', 'cupsctl', 'DirectoryService', 'notifyd', 'klist_cdhashes', 'dtrace', 'kextcache', 'cupsd', 'dbmmanage', 'languagesetup', 'skywalkctl', 'mkpassdb', 'postconf', 'createhomedir', 'ocspd', 'iostat', 'cvdb', 'sa', 'rpc.lockd', 'uuxqt', 'mkfile', 'softwareupdate', 'unsetpassword', 'zic', 'nfs4mapid', 'postsuper', 'htpasswd', 'rotatelogs', 'universalaccessd', 'audit', 'httpd', 'bluetoothaudiod', 'slapauth', 'slappasswd', 'localemanager', 'asr', 'cvupdatefs', 'bless', 'cvgather', 'xscertadmin', 'visudo', 'uusched', 'dsconfigldap', 'smbdiagnose', 'cfprefsd', 'auditd', 'uuchk', 'cvfsck', 'kextfind', 'diskutil', 'cvfsid', 'sso_util', 'vsdbutil', 'ddns-confgen', 'ioalloccount', 'uasysdiagnose', 'dev_mkdb', 'hdik', 'slapdn', 'vpnd', 'postqueue', 'setkey', 'tpctl', 'repairHomePermissions', 'spindump', 'cupsreject', 'traceroute', 'quotaoff', 'newsyslog', 'postfix', 'cvfsdb', 'snmptrapd', 'chroot', 'arp', 'cupsaccept', 'nvram', 'chown', 'mkextunpack', 'sncfgremove', 'sncfgquery', 'postlog', 'installer', 'pppd', 'httpd-wrapper', 'system_profiler', 'fcgistarter', 'bluetoothd', 'slapschema', 'kadmin', 'spray', 'cvversions', 'kextlibs', 'tcpdump', 'xartutil', 'securityd', 'nlcontrol', 'quotaon', 'spctl', 'vipw', 'gssd', 'slaptest', 'automount', 'scselect', 'envvars-std', 'graphicssession', 'ckksctl', 'lpinfo', 'smbd', 'serverinfo', 'cvmkfs', 'postmap', 'postdrop', 'cupsenable', 'cron', 'systemstats', 'bnepd', 'kextstat', 'cvlabel', 'sendmail', 'systemkeychain', 'kcditto', 'slapcat', 'ipconfig', 'auditreduce', 'cvadmin', 'WirelessRadioManagerd', 'apachectl', 'htcacheclean'] ['mount_hfs', 'mount_apfs', 'md5', 'fsck', 'mount_udf', 'quotacheck', 'mount_cd9660', 'ping', 'fsck_exfat', 'mount_exfat', 'fsck_udf', 'shutdown', 'route', 'mount_webdav', 'fsck_hfs', 'nfsd', 'reboot', 'nfsiod', 'fsck_cs', 'fsck_apfs', 'fstyp_msdos', 'disklabel', 'mount_msdos', 'fsck_msdos', 'ifconfig', 'halt', 'mount_9p', 'mount_ntfs', 'rtsol', 'newfs_apfs', 'umount', 'fstyp', 'kextunload', 'mpioutil', 'fstyp_ntfs', 'emond', 'mount_nfs', 'newfs_udf', 'mount_ftp', 'pfctl', 'mknod', 'fstyp_udf', 'dmesg', 'mount', 'fibreconfig', 'fstyp_hfs', 'newfs_hfs', 'dynamic_pager', 'launchd', 'newfs_exfat', 'apfs_hfs_convert', 'nologin', 'mount_afp', 'mount_smbfs', 'ping6', 'kextload', 'mount_cddafs', 'mount_fdesc', 'newfs_msdos', 'mount_acfs', 'mount_devfs'] ['luajittex', 'lollipop', 't1disasm', 'chktex', 'rubikrotation', 'lily-rebuild-pdfs', 'weave', 'mag', 'man', 'ebb', 'prepmx', 'mktexlsr', 'fixmsxpart', 'gsftopk', 'dvibook', 'kpsewhere', 'rumakeindex', 'fontinst', 'cef5conv', 'lacheck', 'httexi', 'lily-image-commands', 'texloganalyser', 'dvilj', 'patgen', 'uptex', 'exceltex', 'pdvitype', 'texconfig-sys', 'xmltex', 'vlna', 'texsis', 'dvipdft', 'pdfjam-pocketmod', 'urlbst', 'pdfcslatex', 'afm2afm', 'cefconv', 'pdfjam-slides6up', 'sjisconv', 'tex2xindy', 'musixtex', 'pdfcsplain', 'opl2ofm', 'de-macro', 'ltx2crossrefxml', 'pdftex', 'dvitodvi', 'gftodvi', 'dviconcat', 'texluajitc', 'dvipng', 'komkindex', 'tex', 'sty2dtx', 'ppltotf', 'yplan', 'eplain', 'eptex', 'lily-glyph-commands', 'htmex', 'texlua', 'htxelatex', 'xasy', 'wovp2ovf', 'dvilualatex', 'cefsconv', 'context', 'platex', 'allec', 'adhocfilelist', 'kpsetool', 'makejvf', 'texdoctk', 'vptovf', 'tex4ht', 'texluajit', 'mtxrunjit', 'uplatex', 'musixflx', 'pfarrei', 'mf', 'latexdiff-vc', 'ttfdump', 'etex', 'fig4latex', 'bibexport', 'ttf2tfm', 'latexmk', 'pmpost', 'pst2pdf', 'pdfbook', 'texconfig-dialog', 'dvilj2p', 'ttf2kotexfont', 'cweave', 'bg5+latex', 'pdfatfi', 'ptex2pdf', 'e2pall', 'kpsewhich', 'upbibtex', 'texdiff', 'mathspic', 'kanji-fontmap-creator', 'kanji-config-updmap', 'asy', 'typeoutfileinfo', 'upmpost', 'pdflatex', 'perltex', 'mkt1font', 'cefslatex', 'cjk-gs-integrate', 'dvitype', 'pdfjadetex', 't1lint', 'jamo-normalize', 'fmtutil-sys', 'wofm2opl', 'dviasm', 'kpsestat', 'pltotf', 'mkindex', 'dvilj6', 'xindy.mem', 'xetex', 'latex', 'ps4pdf', 'multibibliography', 'teckit_compile', 'ttf2afm', 'getmapdl', 'uptftopl', 'contextjit', 'match_parens', 'mkjobtexmf', 'pdf90', 'updvitomp', 'ps2eps', 'pkfix-helper', 'chkweb', 'arlatex', 'pdfpun', 'pdfclose', 'dosepsbin', 'jadetex', 'a2ping', 'bibzbladd', 'ovf2ovp', 'mpost', 'texhash', 'convbkmk', 'thumbpdf', 'pkfix', 'dvihp', 'hbf2gf', 'xindy.run', 'texcount', 'pdf180', 'texmfstart', 'latexrevise', 'cefpdflatex', 'texluac', 'dvicopy', 'lua2dox_filter', 'ctie', 'euptex', 'pdftosrc', 'mf-nowin', 'ctangle', 'omfonts', 't1asm', 'svn-multi', 'mk4ht', 'afm2tfm', 'pdfopen', 'fragmaster', 'pdfnup', 'ebong', 'ctanify', 'pygmentex', 'texdef', 'luatex', 'cslatex', 'synctex', 'texdirflatten', 'gbkpdflatex', 'xdvipdfmx', 'sjispdflatex', 'makeindex', 'dviluatex', 'mkofm', 'dvipdfmx', 'psbook', 'csplain', 'ttftotype42', 'mft', 't1rawafm', 'fmtutil', 'simpdftex', 'depythontex', 'otfinfo', 'latexindent', 'kanji-config-updmap-sys', 'extconv', 'disdvi', 'pdvitomp', 'dvipdfm', 'texliveonfly', 'allneeded', 'htcontext', 't1testpage', 'biber', 'dv2dt', 'xindy', 't1unmac', 'xelatex', 'kpsepath', 'makeglossaries', 'cef5pdflatex', 'autoinst', 'mkpic', 'splitindex', 'repstopdf', 'otangle', 'mfplain', 'latexfileversion', 'latex-git-log', 'inimf', 'latex2man', 'ps2pk', 'htxetex', 'ptftopl', 'ptex', 'gbklatex', 't1binary', 'bibtex', 't1dotlessj', 'mktexpk', 'detex', 'htlatex', 'odvicopy', 'dvidvi', 'extractres', 'extractbb', 'tie', 'tlmgr', 'arara', 'rubibtex', 'dvigif', 'gftype', 'kpseaccess', 'cachepic', 'dtxgen', 'mmafm', 'pktype', 'kpsexpand', 'pktogf', 'msxlint', 't1reencode', 'vftovp', 'ht', 'pdf270', 'mendex', 'ceflatex', 'texlinks', 'pmxchords', 'mptopdf', 'afm2pl', 'mktexmf', 'lamed', 'lualollipop', 'gftopk', 'ulqda', 'dvilj4l', 'pooltype', 'pdfjoin', 'bg5latex', 'aleph', 'wovf2ovp', 'pdfetex', 'dvi2tty', 'ofm2opl', 'pslatex', 'initex', 'latexpand', 'pmx2pdf', 'mkgrkindex', 'mtxrun', 'epsffit', 'listings-ext.sh', 'mktexfmt', 'scor2prt', 'psnup', 'ot2kpx', 'allcm', 'pk2bm', 'dvitomp', 'texindy', 'vpl2vpl', 'luatools', 'cef5latex', 'bg5+pdflatex', 'dvisvgm', 'bg5conv', 'deweb', 'cfftot1', 'dviselect', 'odvitype', 'vpl2ovp', 'otp2ocp', 'latexdiff', 'dt2dv', 'bg5pdflatex', 'mf2pt1', 'psresize', 't1mac', 'epspdf', 'pythontex', 'bibtexu', 'authorindex', 'pdfxmltex', 'pdfjam-slides3up', 'includeres', 't1ascii', 'tangle', 'httex', 'checkcites', 'bibtex8', 'dvi2fax', 'otftotfm', 'cefspdflatex', 'mmpfb', 'pfb2pfa', 'vpe', 'psselect', 'findhyph', 'ovp2ovf', 'utf8mex', 'purifyeps', 'bundledoc', 'mllatex', 'xdvi-xaw', 'sjislatex', 'rungs', 'dvilj4', 'ltxfileinfo', 'texconfig', 'updvitype', 'ltximg', 'dvips', 'pdfjam', 'epstopdf', 'outocp', 'pedigree', 'mkocp', 'kpsereadlink', 'ttf2pk', 'tpic2pdftex', 'psjoin', 'm-tx', 'uppltotf', 'texdoc', 'bbox', 'dvired', 't4ht', 'xdvi', 'ps2frag', 'wopl2ofm', 'devnag', 'ctanupload', 'texexec', 'listbib', 'lualatex', 'pmxab', 'pdfmex', 'tftopl', 'mltex', 'amstex', 'pbibtex', 'pstops', 'mex', 'bibdoiadd', 'pdfflip', 'updmap', 'dvipos', 'luaotfload-tool', 'epspdftk', 'updmap-sys', 'mktextfm', 'texfot', 'rpdfcrop', 'a5toa4', 'installfont-tl', 'pdfcrop', 'xelollipop', 'pdfannotextractor'] ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'c++-9', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'tificc', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'pbmtog3', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'ps2ps', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gcc-ranlib-9', 'gfortran', 'opj_dump', '2to3', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'gs', 'png-fix-itxt', 'pamslice', 'rst2latex.py', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'g++-9', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'jiv', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'x86_64-apple-darwin18-gcc-ranlib-9', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'ps2pdfwr', 'VBoxManage', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'vagrant', 'x86_64-apple-darwin18-gfortran-9', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'pktopbm', 'pgmtolispm', 'fiascotopnm', 'pamdepth', 'VBoxHeadless', 'gsdj', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 'x86_64-apple-darwin18-gcc-9', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'gsnd', 'ppmtopi1', 'ps2pdf13', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'mpivars', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'texdist', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'pnmtosir', 'pambackground', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'python3.7m', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'python3.7m-config', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'VirtualBox', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'mongoose', 'rbox', 'cpp-9', 'lua', 'ps2ascii', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'x86_64-apple-darwin18-c++-9', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'x86_64-apple-darwin18-gcc-nm-9', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'ps2pdf', 'tiffset', 'tclsh', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pf2afm', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'gcov-dump-9', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'pfbtopfa', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'x86_64-apple-darwin18-gcc-ar-9', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'x86_64-apple-darwin18-gcc-9.2.0', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'sndfile-regtest', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'gcc-nm-9', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'gslp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'VBoxAutostart', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'gfortran-9', 'pydoc3.7', 'ppmquant', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'printafm', 'h5diff', 'ppmtopgm', 'pbmtopk', 'gdlib-config', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'ps2ps2', 'h5clear', 'psicc', 'pcretest', 'gslj', 'ps2epsi', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'x86_64-apple-darwin18-g++-9', 'jpgicc', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'ppmtopj', 'pampop9', 'tclselect', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'rst2xml.py', 'pelican-themes', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'git-clang-format', 'pyvenv', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'pnmtoplainpnm', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'imgcmp', 'pcregrep', 'tiff2rgba', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'pelican-import', 'VBoxVRDP', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] Warning accessing gives errors: [Errno 2] No such file or directory: '' ['xfs', 'xfsinfo', 'atobm', 'xdpyinfo', 'showrgb', 'xlsfonts', 'editres', 'fonttosfnt', 'xfontsel', 'xclock', 'xmore', 'xman', 'xmag', 'xrefresh', 'fc-list', 'xdmshell', 'xauth', 'twm', 'cxpm', 'mkfontdir', 'xclipboard', 'png-fix-itxt', 'ucs2any', 'xterm', 'bdftruncate', 'xsetroot', 'xmessage', 'xcursorgen', 'fc-pattern', 'xkbvleds', 'xkbbell', 'freetype-config', 'Xephyr', 'fc-validate', 'bitmap', 'libpng16-config', 'pngfix', 'fc-query', 'xkbprint', 'luit', 'xhost', 'gtf', 'listres', 'x11perf', 'Xorg', 'libpng-config', 'koi8rxterm', 'xpr', 'xstdcmap', 'xgc', 'mkfontscale', 'setxkbmap', 'xinit', 'Xquartz', 'xbacklight', 'xdm', 'xcmsdb', 'xdpr', 'xfindproxy', 'xrdb', 'xlsclients', 'xprop', 'xkeystone', 'xeyes', 'Xvfb', 'Xnest', 'xev', 'startx', 'xkbwatch', 'xscope', 'xfd', 'sessreg', 'xwud', 'lndir', 'xinput', 'xconsole', 'glxinfo', 'sxpm', 'xsetmode', 'Xfake', 'fslsfonts', 'xcompmgr', 'xrandr', 'bmtoa', 'xwd', 'xmodmap', 'glxgears', 'fc-cache', 'iceauth', 'cvt', 'xcutsel', 'bdftopcf', 'fc-cat', 'xsetpointer', 'xkbevd', 'quartz-wm', 'xsm', 'appres', 'xset', 'xlsatoms', 'fc-match', 'oclock', 'x11perfcomp', 'resize', 'showfont', 'xditview', 'xwininfo', 'xvinfo', 'xcalc', 'xgamma', 'makedepend', 'viewres', 'ico', 'X', 'gccmakedep', 'xedit', 'smproxy', 'xkill', 'xkbcomp', 'xload', 'font_cache', 'xmh', 'xlogo', 'fstobdf', 'uxterm', 'fc-scan'] ['ndmetis', 'ppmtouil', 'pstoedit', 'pip3.7', 'lzmainfo', 'xwdtopnm', 'ppmtorgb3', 'pamtohdiff', 'pbmtoppa', 'ccmake', 'ppmtoyuvsplit', 'pbmtonokia', 'leaftoppm', 'dvipdf', 'event_rpcgen.py', 'pnminvert', 'pbmpage', 'pnmrotate', 'bdftogd', 'hwloc-compress-dir', 'gen-enc-table', 'pgmslice', 'octave-cli-5.2.0', 'ppmshadow', 'anytopnm', 'asciitopgm', 'ppmtoppm', 'pgmkernel', 'tifftopnm', 'fig2ps2tex', 'c++-9', 'pbmtoescp2', 'ppmcie', 'libtool', 'ddbugtopbm', 'pgmhist', 'rawtoppm', 'webpng', 'sndfile-cmp', 'pnmcut', 'aclocal', 'pnmhistmap', 'palmtopnm', 'pamseq', 'glpsol', 'mpif90', 'fitstopnm', 'pampick', 'hwloc-bind', 'pngtopam', 'pambrighten', 'ppmmix', 'tificc', 'pnmtofits', 'pamrecolor', 'pgmmake', 'pamaltsat', 'pbmtog3', 'hydra_pmi_proxy', 'pbmtomrf', 'pamtilt', 'automake-1.14', 'ps2ps', 'pbmtodjvurle', 'octave-cli', 'h5copy', 'xzdec', 'luac5.3', 'tiffsplit', 'pambayer', 'ppmforge', 'font2c', 'pnmtosgi', 'ppmtojpeg', 'wheel3', 'mtvtoppm', 'pamstretch', 'h52gif', 'fax2tiff', 'pamfunc', 'pcdovtoppm', 'linkicc', 'rst2xetex.py', 'gdb', 'pnmnoraw', 'h5perf_serial', 'fc-list', 'gcov-tool-9', 'pnmpaste', 'pamsharpness', 'opj_compress', 'GraphicsMagickWand-config', 'ppmtoilbm', 'mpirun', 'gs-noX11', 'heif-enc', 'lispmtopgm', 'gtester', 'ppmrainbow', 'bjoentegaard', 'pbmtopgm', 'pnmtops', 'pbmtocis', 'autoscan', 'callgrind_control', 'gd2togif', '411toppm', 'gcc-ranlib-9', 'gfortran', 'opj_dump', '2to3', 'pbmtoxbm', 'fftwl-wisdom', 'lua-5.3', 'mkoctfile-5.2.0', 'ppmfade', 'pamperspective', 'python3', 'pnmtoddif', 'wish8.6', 'pamfind', 'plot', 'gs', 'png-fix-itxt', 'pamslice', 'rst2latex.py', 'pamsharpmap', 'ppmtotga', 'pbmtowbmp', 'pgmenhance', 'gnuplot', 'luac', 'jbigtopnm', 'pgmtosbig', 'cmake', 'enc265', 'ppmflash', 'opj_decompress', 'tiffdump', 'pamaddnoise', 'g++-9', 'h5unjam', 'pbmtogem', 'ppmspread', 'ppmddumpfont', 'fc-pattern', 'mpiexec.hydra', 'ilbmtoppm', 'pbmtox10bm', 'pnmfile', 'aclocal-1.14', 'unxz', 'ppmdmkfont', 'qvoronoi', 'pbmtolps', 'hwloc-distrib', 'tiff2bw', 'cg_merge', 'pammasksharpen', 'jiv', 'freetype-config', 'pip3', 'exrmultipart', 'pgmnorm', 'gr2fonttest', 'sunicontopnm', 'exrmultiview', 'gdbus-codegen', 'fc-validate', 'pamtopdbimg', 'x86_64-apple-darwin18-gcc-ranlib-9', 'cjpeg', 'teacup', 'autom4te', 'ppmchange', 'h5stat', 'cmpfillin', 'escp2topbm', 'jpegtran', 'h5ls', 'exrmaketiled', 'clang-format', 'lstopo', 'pbmminkowski', 'libpng16-config', 'heif-info', 'yuvtoppm', 'xzegrep', 'gsettings', 'ps2pdfwr', 'VBoxManage', 'pngfix', 'python3.7-config', 'zeisstopnm', 'ps2pdf12', 'vagrant', 'x86_64-apple-darwin18-gfortran-9', 'glib-compile-schemas', 'webpmux', 'pamscale', 'pgmtopgm', 'fc-query', 'tiffcmp', 'pnmtopng', 'cameratopam', 'pnmtojpeg', 'luac-5.3', 'yuvsplittoppm', 'rasttopnm', 'exr2aces', 'ppmtopjxl', 'tiff2pdf', 'pbmtoicon', 'pbmreduce', 'ppmdist', 'pamsistoaglyph', 'wish', 'pbmtozinc', 'unlzma', 'pgmtexture', 'pbmto4425', 'ppmdim', 'pbmpscale', 'ppmtopuzz', 'ybmtopbm', 'pbmtomgr', 'pbmtopi3', 'hdifftopam', 'pamexec', 'ppmtowinicon', 'easy_install-3.7', 'pktopbm', 'pgmtolispm', 'fiascotopnm', 'pamdepth', 'VBoxHeadless', 'gsdj', 'hwloc-calc', 'gif2h5', 'pnmarith', 'pjtoppm', 'pyvenv-3.7', 'xzfgrep', 'sirtopnm', 'vgdb', 'webpinfo', 'gdtopng', 'hwloc-info', 'h5jam', 'libpng-config', 'pnmscalefixed', 'gdbm_dump', 'pbmtomda', 'pdf2dsc', 'fltk-config', 'pamtompfont', 'mkoctfile', 'gobject-query', 'brushtopbm', 'ps2pdf14', 'pnmsmooth', 'x86_64-apple-darwin18-gcc-9', 'pnmenlarge', 'brew', 'pnmtopclxl', 'fstopgm', 'pgmdeshadow', 'plotfont', 'graph', 'gsnd', 'ppmtopi1', 'ps2pdf13', 'ppmdcfont', 'h5cc', 'bmptopnm', 'pnminterp', 'g3topbm', 'pamgetcolor', 'pbmtoascii', 'pnmcrop', 'pnmtopalm', 'pamsplit', 'pbmlife', 'pamundice', 'xpmtoppm', 'rletopnm', 'pngtogd2', 'mpivars', 'sgitopnm', 'pbmtoepsi', 'sldtoppm', 'texdist', 'tclsh8.6', 'sndfile-metadata-set', 'pnmflip', 'eyuvtoppm', 'autoupdate', 'gs-X11', 'pnmtosir', 'pambackground', 'rst2odt_prepstyles.py', 'manweb', 'pdbimgtopam', 'jpeg2ktopam', 'pnmtotiff', 'pamshadedrelief', 'python3.7m', 'mdatopbm', 'ppmtoeyuv', 'ppmntsc', 'djpeg', 'gs-X11-Yosemite', 'picttoppm', 'giftopnm', 'sndfile-salvage', 'pnmindex', 'pnmshear', 'pnmtile', 'annotate', 'pamtopnm', 'fftwf-wisdom', 'pamunlookup', 'pamlevels', 'tiffcrop', 'gs-noX11-Yosemite', 'neotoppm', 'wbmptopbm', 'pbmtobbnbg', 'h5mkgrp', 'pamrgbatopng', 'libtoolize', 'rlatopam', 'python3.7m-config', 'pgmramp', 'm2gmetis', 'pnmcomp', 'pamtooctaveimg', 'gio-querymodules', 'mpif77', 'pamtohtmltbl', 'pcdindex', 'ppmtoneo', 'fribidi', 'ppmtosixel', 'pnmtorast', 'h5format_convert', 'pnmhisteq', 'gemtopbm', 'idle3', 'cg_diff', 'mpmetis', 'gdcmpgif', 'python3.7', 'xz', 'ppmdither', 'pphs', 'pi1toppm', 'pampaintspill', 'spctoppm', 'cairo-trace', 'gsdj500', 'VirtualBox', 'pbmtomatrixorbital', 'gdparttopng', 'mgrtopbm', 'h5repack', 'fluid', 'ximtoppm', 'glib-compile-resources', 'pamtogif', 'ppmtoacad', 'vboxwebsrv', 'mongoose', 'rbox', 'cpp-9', 'lua', 'ps2ascii', 'pamdice', 'macptopbm', 'pamtosvg', 'pbmtogo', 'VBoxDTrace', 'ppmtolj', 'ppmtoxpm', 'cg_annotate', 'img2webp', 'mpichversion', 'x86_64-apple-darwin18-c++-9', 'hwloc-ls', 'pamstretch-gen', 'pbmmask', 'ppmglobe', 'tiffdither', 'x86_64-apple-darwin18-gcc-nm-9', 'sputoppm', 'mpicc', 'cmuwmtopbm', 'pelican-quickstart', 'fftw-wisdom', 'pngtopnm', 'pamstereogram', 'python3-config', 'f2py', 'qdelaunay', 'ps2pdf', 'tiffset', 'tclsh', 'pamflip', 'pfmtopam', 'avstopam', 'tgatoppm', 'giftogd2', 'pbmtextps', 'pango-view', 'ppmpat', 'pamtoxvmini', 'hpcdtoppm', 'h5watch', 'pi3topbm', 'pbmtoepson', 'pnmnorm', 'ppmtobmp', 'tiff2ps', 'pnmtoxwd', 'pf2afm', 'pamcrater', 'pango-list', 'hb-ot-shape-closure', 'qrttoppm', 'heif-thumbnailer', 'ppmtoarbtxt', 'gcov-dump-9', 'ppm3d', 'fig2dev', 'SophosUpdate', 'hwloc-patch', 'pamcomp', 'h5c++', 'pfbtopfa', 'lzless', 'cistopbm', 'pamedge', 'ode', 'valgrind-listener', 'octave-config', 'x86_64-apple-darwin18-gcc-ar-9', 'pbmtoatk', 'f2py3.7', 'ppmtoterm', 'vbox-img', 'tiffinfo', 'cairo-sphinx', 'ppmdraw', 'pnmconvol', 'octave', 'x86_64-apple-darwin18-gcc-9.2.0', 'GraphicsMagick-config', 'pgmoil', 'gresource', 'flac', 'bioradtopgm', 'psidtopgm', 'heif-convert', 'pamtopfm', 'sndfile-regtest', 'pamtojpeg2k', 'pamwipeout', 'pamsummcol', 'jpegtopnm', 'sndfile-concat', 'gcc-nm-9', 'hipstopgm', 'ppmtopict', 'octave-5.2.0', 'graphchk', 'pnmcat', 'gpmetis', 'pgmminkowski', 'gtester-report', 'pc1toppm', 'pgmabel', 'atktopbm', 'ppmtogif', 'pbmclean', 'ppmrelief', 'ctest', 'parkill', 'pamfixtrunc', 'epstool', 'xzless', 'pal2rgb', 'VBoxBalloonCtrl', 'exrmakepreview', 'gslp', 'lzcmp', 'pnmstitch', 'gd2topng', 'ppmtoicr', 'pygmentize', 'xzcat', 'pamhue', 'mrftopbm', 'spline', 'metaflac', 'pamthreshold', 'autoreconf', 'pamstack', 'VBoxAutostart', 'pbmtocmuwm', 'transicc', 'exrstdattr', 'sweep', 'wrjpgcom', 'mpicxx', 'pnmtofiasco', 'gfortran-9', 'pydoc3.7', 'ppmquant', 'autoconf', 'sndfile-deinterleave', 'pbmtoplot', 'qconvex', 'pbmmake', 'pnmtotiffcmyk', 'pamtoavs', 'pbmtosunicon', 'pamsumm', 'pnmpsnr', 'printafm', 'h5diff', 'ppmtopgm', 'pbmtopk', 'gdlib-config', 'pgmbentley', 'autoheader', 'hwloc-gather-cpuid', 'pamendian', 'imginfo', 'rawtopgm', 'ps2ps2', 'h5clear', 'psicc', 'pcretest', 'gslj', 'ps2epsi', 'glib-gettextize', 'xzcmp', 'GraphicsMagick++-config', 'pamtofits', 'gm', 'gouldtoppm', 'lzcat', 'double', 'pnmtorle', 'pamoil', 'pbmtoibm23xx', 'x86_64-apple-darwin18-g++-9', 'jpgicc', 'pgmmedian', 'hwloc-diff', 'yuv-distortion', 'gcov-9', 'sndfile-info', 'pammixinterlace', 'pbmtopsg3', 'lstopo-no-graphics', 'gcc-ar-9', 'fc-cache', 'ppmtopj', 'pampop9', 'tclselect', 'idle3.7', 'pnmremap', 'hwloc-ps', 'gdbus', 'pcxtoppm', 'gsbj', 'unix-lpr.sh', 'fc-cat', 'fftw-wisdom-to-conf', 'callgrind_annotate', 'ppmtospu', 'ppmcolors', 'ppmtoleaf', 'lzdiff', 'h5redeploy', 'pgmtost4', 'pnmtopnm', 'pgmedge', 'valgrind-di-server', 'pamvalidate', 'gdbmtool', 'sbigtopgm', 'rst2xml.py', 'pelican-themes', 'pamtotiff', 'glib-genmarshal', 'pcre-config', 'git-clang-format', 'pyvenv', 'ppmhist', 'qhalf', 'rst2odt.py', 'winicontoppm', 'h5debug', 'pgmmorphconv', 'pamlookup', 'dwebp', 'xbmtopbm', 'pic2tpic', 'ppmtoyuv', 'ppmtomap', 'texdistmgr', 'pgmcrater', 'ifnames', 'pnmalias', 'pnmcolormap', 'pammixmulti', 'pgmtopbm', 'pbmto10x', 'ppmtopcx', 'lua5.3', 'gd2copypal', 'pdf2ps', 'ppmrough', 'ppmmake', 'x265', 'lzmadec', 'fax2ps', 'pnmmercator', 'rgb3toppm', 'fc-match', 'pnmgamma', 'infotopam', 'eps2eps', 'h5repart', 'lzgrep', 'pnmtoplainpnm', 'pamdeinterlace', 'gcc-9', 'pamgradient', 'h5import', 'pnmsplit', 'tiffcp', 'lprsetup.sh', 'lzmore', 'xvminitoppm', 'hydra_persist', 'pamfile', 'h5fc', 'mpiexec', 'pnmnlfilt', 'pamtouil', 'pamtodjvurle', 'pelican', 'pgmtofs', 'pngtogd', 'pnmmargin', 'pamchannel', 'pnmquantall', 'pbmtomacp', 'f2py3', 'pbmtext', 'sndfile-metadata-get', 'pnmpad', 'ppmwheel', 'exrenvmap', 'ppmlabel', 'thinkjettopbm', 'pnmquant', 'pbmupc', 'winicontopam', 'wftopfa', 'pamtosrf', 'pamditherbw', 'pbmtoptx', 'pgmnoise', 'pbmtolj', 'lzfgrep', 'pamarith', 'exrheader', 'rst2pseudoxml.py', 'fc-conflist', '2to3-3.7', 'glib-mkenums', 'xzmore', 'hersheydemo', 'hb-view', 'pnmdepth', 'pammosaicknit', 'ppmquantall', 'cwebp', 'sndfile-interleave', 'sndfile-convert', 'tiffmedian', 'ppmshift', 'yuy2topam', 'mpic++', 'pamenlarge', 'xzgrep', 'mpifort', 'pamgauss', 'rst2s5.py', 'pydoc3', 'pamtotga', 'hb-shape', 'valgrind', 'pbmtoln03', 'pstopnm', 'ppmtompeg', 'svgtopam', 'rst2html.py', 'hydra_nameserver', 'lzma', 'rst2man.py', 'gdbm_load', 'pamcut', 'jasper', 'gemtopnm', 'pbmtoybm', 'spottopgm', 'pamfix', 'pic2plot', 'st4topgm', 'sndfile-play', 'srftopam', 'pnmmontage', 'rdjpgcom', 'ppmbrighten', 'automake', 'tek2plot', 'icontopbm', 'lzegrep', 'cpack', 'rd-curves', 'raw2tiff', 'pamtris', 'transfig', 'ppmtoapplevol', 'pgmtoppm', 'ppm2tiff', 'rstpep2html.py', 'xzdiff', 'imgcmp', 'pcregrep', 'tiff2rgba', 'pamtopam', 'pamrubber', 'pamtowinicon', 'ppmtoascii', 'hb-subset', 'ppmtv', 'ppmtomitsu', 'imgtoppm', 'gio', 'hwloc-annotate', 'pamtopng', 'ppmnorm', 'ppmcolormask', 'pamtable', 'pnmscale', 'h5dump', '.keepme', 'ms_print', 'fc-scan', 'pelican-import', 'VBoxVRDP', 'bmptoppm', 'pnmtojbig', 'qhull', 'octave-config-5.2.0'] Warning accessing gives errors: [Errno 2] No such file or directory: '' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.packages.c2html 0.007400 ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.000696 ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.000589 ================================================================================ TEST alternateConfigureLibrary from config.packages.silo(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.000656 ================================================================================ TEST alternateConfigureLibrary from config.packages.Random123(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.000653 ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000656 ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000613 ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000605 ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000664 ================================================================================ TEST checkDependencies from config.packages.regex(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.regex(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:861) TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:861) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: [] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['regex.h'] in Compiler specific search REGEX: [] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['regex.h'] in [] ================================================================================ TEST checkVersion from config.packages.regex(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:985) TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:985) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.regex(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:919) TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:919) By default we don't care about checking if the library is shared child config.packages.regex 0.448012 child config.packages.cxxlibs 0.000026 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.000870 ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.000727 ================================================================================ TEST checkDependencies from config.packages.X(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.X(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.X(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:861) TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:861) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_XSetWMName", referenced from: __check_XSetWMName in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Compiler specific search X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lX11 -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lX11 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Package specific search directory X: ['/opt/X11/lib/libX11.a'] Contents: ['bin', 'libexec', 'include', 'etc', 'var', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/opt/X11/lib/libX11.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 -lc++ -ldl Defined "HAVE_LIBX11" to "1" Checking for optional headers [] in Package specific search directory X: ['/opt/X11/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/X11/include'] Found header files [] in ['/opt/X11/include'] Checking for headers ['X11/Xlib.h'] in Package specific search directory X: ['/opt/X11/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/opt/X11/include'] Checking include with compiler flags var CPPFLAGS ['/opt/X11/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/opt/X11/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['X11/Xlib.h'] in ['/opt/X11/include'] ================================================================================ TEST checkVersion from config.packages.X(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:985) TESTING: checkVersion from config.packages.X(config/BuildSystem/config/package.py:985) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.X(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:919) TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:919) By default we don't care about checking if the library is shared child config.packages.X 1.173596 ================================================================================ TEST alternateConfigureLibrary from config.packages.GLVis(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.000959 ================================================================================ TEST alternateConfigureLibrary from config.packages.CoDiPack(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.000665 ================================================================================ TEST alternateConfigureLibrary from config.packages.adblaslapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.000612 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADOLC(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.000602 ================================================================================ TEST locateCMake from config.packages.cmake(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/cmake.py:39) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:39) Looking for default CMake executable Checking for program /Users/markadams/homebrew/bin/cmake...not found Checking for program /opt/anaconda2/bin/cmake...not found Checking for program /opt/anaconda2/bin/cmake...not found Checking for program /Users/markadams/opt/miniconda2/bin/cmake...not found Checking for program /opt/miniconda2/bin/cmake...not found Checking for program /Users/markadams/opt/miniconda3/bin/cmake...not found Checking for program /usr/local/opt/texinfo/bin/cmake...not found Checking for program /Users/markadams/homebrew/sbin/cmake...not found Checking for program /Users/markadams/homebrew/bin/cmake...not found Checking for program /Users/markadams/homebrew/bin/cmake...not found Checking for program /usr/local/bin/cmake...found Defined make macro "CMAKE" to "/usr/local/bin/cmake" Looking for default CTest executable Checking for program /Users/markadams/homebrew/bin/ctest...not found Checking for program /opt/anaconda2/bin/ctest...not found Checking for program /opt/anaconda2/bin/ctest...not found Checking for program /Users/markadams/opt/miniconda2/bin/ctest...not found Checking for program /opt/miniconda2/bin/ctest...not found Checking for program /Users/markadams/opt/miniconda3/bin/ctest...not found Checking for program /usr/local/opt/texinfo/bin/ctest...not found Checking for program /Users/markadams/homebrew/sbin/ctest...not found Checking for program /Users/markadams/homebrew/bin/ctest...not found Checking for program /Users/markadams/homebrew/bin/ctest...not found Checking for program /usr/local/bin/ctest...found Defined make macro "CTEST" to "/usr/local/bin/ctest" Running Executable WITHOUT threads to time it out Executing: /usr/local/bin/cmake --version stdout: cmake version 3.16.5 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.16.5 child config.packages.cmake 0.164487 ================================================================================ TEST alternateConfigureLibrary from config.packages.googletest(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001016 ================================================================================ TEST alternateConfigureLibrary from config.packages.unittestcpp(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.000608 ================================================================================ TEST alternateConfigureLibrary from config.packages.eigen(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.000611 ================================================================================ TEST alternateConfigureLibrary from config.packages.szlib(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.000627 ================================================================================ TEST checkDependencies from config.packages.zlib(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.zlib(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:861) TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:861) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Looking for ZLIB at git.zlib, hg.zlib or a directory starting with ['zlib'] Could not locate an existing copy of ZLIB: [] Downloading zlib =============================================================================== Trying to download http://www.zlib.net/zlib-1.2.11.tar.gz for ZLIB =============================================================================== Downloading http://www.zlib.net/zlib-1.2.11.tar.gz to /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/_d_zlib-1.2.11.tar.gz Extracting /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/_d_zlib-1.2.11.tar.gz Running Executable WITHOUT threads to time it out Executing: cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages; chmod -R a+r zlib-1.2.11;find zlib-1.2.11 -type d -name "*" -exec chmod a+rx {} \; Looking for ZLIB at git.zlib, hg.zlib or a directory starting with ['zlib'] Found a copy of ZLIB in zlib-1.2.11 ZLIB was just downloaded, forcing a rebuild because cannot determine if package has changed zlibDir = /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/zlib-1.2.11 installDir /Users/markadams/Codes/petsc/arch-macosx-gnu-g =============================================================================== Building and installing zlib, this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/zlib-1.2.11 && CC="/usr/local/Cellar/mpich/3.3.2/bin/mpicc" CFLAGS="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0" prefix="/Users/markadams/Codes/petsc/arch-macosx-gnu-g" ./configure && /usr/bin/make -j7 -l12.0 && /usr/bin/make install stdout: Checking for shared library support... Building shared library libz.1.2.11.dylib with /usr/local/Cellar/mpich/3.3.2/bin/mpicc. Checking for size_t... Yes. Checking for off64_t... No. Checking for fseeko... Yes. Checking for strerror... Yes. Checking for unistd.h... Yes. Checking for stdarg.h... Yes. Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf(). Checking for vsnprintf() in stdio.h... Yes. Checking for return value of vsnprintf()... Yes. Checking for attribute(visibility) support... Yes. /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -I. -c -o example.o test/example.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o adler32.o adler32.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o crc32.o crc32.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o deflate.o deflate.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o infback.o infback.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o inffast.o inffast.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o inflate.o inflate.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o inftrees.o inftrees.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o trees.o trees.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o zutil.o zutil.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o compress.o compress.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o uncompr.o uncompr.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o gzclose.o gzclose.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o gzlib.o gzlib.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o gzread.o gzread.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o gzwrite.o gzwrite.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -I. -c -o minigzip.o test/minigzip.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/adler32.o adler32.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/crc32.o crc32.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/deflate.o deflate.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/infback.o infback.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/inflate.o inflate.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/inffast.o inffast.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/inftrees.o inftrees.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/trees.o trees.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/zutil.o zutil.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/compress.o compress.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/uncompr.o uncompr.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/gzclose.o gzclose.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/gzlib.o gzlib.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/gzwrite.o gzwrite.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/gzread.o gzread.c /usr/bin/libtool -o libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o gzwrite.o /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -o example example.o -L. libz.a /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a /usr/local/Cellar/mpich/3.3.2/bin/mpicc -dynamiclib -install_name /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.1.dylib -compatibility_version 1 -current_version 1.2.11 -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -o libz.1.2.11.dylib adler32.lo crc32.lo deflate.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo -lc rm -f libz.dylib libz.1.dylib ln -s libz.1.2.11.dylib libz.dylib ln -s libz.1.2.11.dylib libz.1.dylib /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -o examplesh example.o -L. libz.1.2.11.dylib /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -o minigzipsh minigzip.o -L. libz.1.2.11.dylib rm -f /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.a cp libz.a /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.a cp libz.1.2.11.dylib /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib chmod 755 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.1.2.11.dylib rm -f /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/man/man3/zlib.3 cp zlib.3 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/man/man3 chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/man/man3/zlib.3 rm -f /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/pkgconfig/zlib.pc cp zlib.pc /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/pkgconfig chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/pkgconfig/zlib.pc rm -f /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/zlib.h /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/zconf.h cp zlib.h zconf.h /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/zlib.h /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/zconf.h ********Output of running make on ZLIB follows ******* Checking for shared library support... Building shared library libz.1.2.11.dylib with /usr/local/Cellar/mpich/3.3.2/bin/mpicc. Checking for size_t... Yes. Checking for off64_t... No. Checking for fseeko... Yes. Checking for strerror... Yes. Checking for unistd.h... Yes. Checking for stdarg.h... Yes. Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf(). Checking for vsnprintf() in stdio.h... Yes. Checking for return value of vsnprintf()... Yes. Checking for attribute(visibility) support... Yes. /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -I. -c -o example.o test/example.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o adler32.o adler32.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o crc32.o crc32.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o deflate.o deflate.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o infback.o infback.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o inffast.o inffast.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o inflate.o inflate.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o inftrees.o inftrees.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o trees.o trees.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o zutil.o zutil.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o compress.o compress.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o uncompr.o uncompr.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o gzclose.o gzclose.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o gzlib.o gzlib.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o gzread.o gzread.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -c -o gzwrite.o gzwrite.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -I. -c -o minigzip.o test/minigzip.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/adler32.o adler32.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/crc32.o crc32.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/deflate.o deflate.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/infback.o infback.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/inflate.o inflate.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/inffast.o inffast.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/inftrees.o inftrees.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/trees.o trees.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/zutil.o zutil.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/compress.o compress.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/uncompr.o uncompr.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/gzclose.o gzclose.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/gzlib.o gzlib.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/gzwrite.o gzwrite.c /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -DPIC -c -o objs/gzread.o gzread.c /usr/bin/libtool -o libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o gzwrite.o /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -o example example.o -L. libz.a /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a /usr/local/Cellar/mpich/3.3.2/bin/mpicc -dynamiclib -install_name /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.1.dylib -compatibility_version 1 -current_version 1.2.11 -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -fPIC -DHAVE_HIDDEN -o libz.1.2.11.dylib adler32.lo crc32.lo deflate.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo -lc rm -f libz.dylib libz.1.dylib ln -s libz.1.2.11.dylib libz.dylib ln -s libz.1.2.11.dylib libz.1.dylib /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -o examplesh example.o -L. libz.1.2.11.dylib /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DHAVE_HIDDEN -o minigzipsh minigzip.o -L. libz.1.2.11.dylib rm -f /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.a cp libz.a /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.a cp libz.1.2.11.dylib /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib chmod 755 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.1.2.11.dylib rm -f /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/man/man3/zlib.3 cp zlib.3 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/man/man3 chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/man/man3/zlib.3 rm -f /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/pkgconfig/zlib.pc cp zlib.pc /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/pkgconfig chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/pkgconfig/zlib.pc rm -f /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/zlib.h /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/zconf.h cp zlib.h zconf.h /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/zlib.h /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/zconf.h********End of Output of running make on ZLIB ******* Checking for library in Download ZLIB: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.a'] Contents: ['bin', 'include', 'lib', 'externalpackages', 'share'] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz -lc++ -ldl Defined "HAVE_LIBZ" to "1" Checking for optional headers [] in Download ZLIB: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Found header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking for headers ['zlib.h'] in Download ZLIB: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking include with compiler flags var CPPFLAGS ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['zlib.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkVersion from config.packages.zlib(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:985) TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:985) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.zlib(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:919) TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:919) By default we don't care about checking if the library is shared child config.packages.zlib 8.802873 child config.packages.mathlib 0.000018 ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.001027 ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.000704 ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.000663 ================================================================================ TEST alternateConfigureLibrary from config.packages.libpng(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.000659 ================================================================================ TEST alternateConfigureLibrary from config.packages.combblas(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.000734 ================================================================================ TEST checkDependencies from config.packages.Triangle(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.Triangle(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.Triangle(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/Triangle.py:124) TESTING: configureLibrary from config.packages.Triangle(config/BuildSystem/config/packages/Triangle.py:124) ================================================================================== Checking for a functional Triangle Looking for TRIANGLE at git.triangle, hg.triangle or a directory starting with ['Triangle'] Could not locate an existing copy of TRIANGLE: ['zlib-1.2.11'] Downloading Triangle =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/Triangle.tar.gz for TRIANGLE =============================================================================== Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/Triangle.tar.gz to /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/_d_Triangle.tar.gz Extracting /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/_d_Triangle.tar.gz Running Executable WITHOUT threads to time it out Executing: cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages; chmod -R a+r Triangle;find Triangle -type d -name "*" -exec chmod a+rx {} \; Looking for TRIANGLE at git.triangle, hg.triangle or a directory starting with ['Triangle'] Found a copy of TRIANGLE in Triangle Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Darwin TRIANGLE was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Compiling Triangle; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/Triangle && make clean && make libtriangle.a && make clean stdout: /bin/rm -f triangle.o /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -I. -fPIC -DNO_PETSC_MALLOC -DTRILIBRARY -o src/triangle.o -c src/triangle.c /usr/bin/ar cr libtriangle.a src/triangle.o /bin/rm -f triangle.o =============================================================================== Installing Triangle; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: mkdir -p /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib Running Executable WITHOUT threads to time it out Executing: mkdir -p /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include Running Executable WITHOUT threads to time it out Executing: cp -f /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/Triangle/libtriangle.a /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib Running Executable WITHOUT threads to time it out Executing: cp -f /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/Triangle/src/triangle.h /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include ********Output of running make on TRIANGLE follows ******* /bin/rm -f triangle.o /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -I. -fPIC -DNO_PETSC_MALLOC -DTRILIBRARY -o src/triangle.o -c src/triangle.c /usr/bin/ar cr libtriangle.a src/triangle.o /bin/rm -f triangle.o********End of Output of running make on TRIANGLE ******* Checking for library in Download TRIANGLE: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libtriangle.a'] Contents: ['bin', 'include', 'lib', 'externalpackages', 'share'] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [triangulate] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libtriangle.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char triangulate(); static void _check_triangulate() { triangulate(); } int main() { _check_triangulate();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -ltriangle -lc++ -ldl Defined "HAVE_LIBTRIANGLE" to "1" Checking for optional headers [] in Download TRIANGLE: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Found header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking for headers ['triangle.h'] in Download TRIANGLE: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['triangle.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking include with compiler flags var CPPFLAGS ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['triangle.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkVersion from config.packages.Triangle(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:985) TESTING: checkVersion from config.packages.Triangle(config/BuildSystem/config/package.py:985) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.Triangle(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:919) TESTING: checkSharedLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:919) By default we don't care about checking if the library is shared child config.packages.Triangle 1.495639 ================================================================================ TEST checkDependencies from config.packages.metis(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.metis(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.metis(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/metis.py:49) TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/packages/metis.py:49) ================================================================================== Checking for a functional metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Could not locate an existing copy of METIS: ['Triangle', 'zlib-1.2.11'] Downloading metis =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-metis.git for METIS =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://bitbucket.org/petsc/pkg-metis.git /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Found a copy of METIS in git.metis Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', 'v5.1.0-p8^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', 'v5.1.0-p8'] stdout: ca7a59e6283f608d3e0d8a9d500838afb7f4339a Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', 'ca7a59e6283f608d3e0d8a9d500838afb7f4339a'] METIS was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Configuring METIS with cmake, this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/local/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/Users/markadams/Codes/petsc/arch-macosx-gnu-g -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="/usr/local/Cellar/mpich/3.3.2/bin/mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0" -DCMAKE_C_FLAGS_DEBUG:STRING="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0" -DCMAKE_C_FLAGS_RELEASE:STRING="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0" -DCMAKE_CXX_COMPILER="/usr/local/Cellar/mpich/3.3.2/bin/mpicxx" 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=============================================================================== Compiling and installing METIS; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make -j7 -l12.0 stdout: /usr/local/Cellar/cmake/3.16.5/bin/cmake -S/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis -B/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_progress_start /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build/CMakeFiles /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build/CMakeFiles/progress.marks /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all /Applications/Xcode.app/Contents/Developer/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build && /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/libmetis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build/libmetis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis /Applications/Xcode.app/Contents/Developer/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build [ 3%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/evaluate.c.o [ 6%] Building C object 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/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/GKlib/b64.c [ 9%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fs.c.o [ 11%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build/libmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/GKlib -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/libmetis/. -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build/include -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -isysroot 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Run "cmake --help-policy CMP0042" for policy details. Use the cmake_policy command to set the policy and suppress this warning. MACOSX_RPATH is not specified for the following targets: metis This warning is for project developers. Use -Wno-dev to suppress it. 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libmetis/CMakeFiles/metis.dir/depend cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build && /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/libmetis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build/libmetis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build make[2]: Nothing to be done for `libmetis/CMakeFiles/metis.dir/build'. [100%] Built target metis /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_progress_start /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.metis/petsc-build/CMakeFiles 0 /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Nothing to be done for `preinstall'. Install the project... /usr/local/Cellar/cmake/3.16.5/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/metis.h -- Installing: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/gklib_tls.h -- Installing: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libmetis.dylib -- Installing: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/gklib_defs.h -- Installing: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/gklib_rename.h********End of Output of running make on METIS ******* Checking for library in Download METIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libmetis.a'] Contents: ['bin', 'include', 'lib', 'externalpackages', 'share'] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [METIS_PartGraphKway] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libmetis.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char METIS_PartGraphKway(); static void _check_METIS_PartGraphKway() { METIS_PartGraphKway(); } int main() { _check_METIS_PartGraphKway();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lmetis -lc++ -ldl Defined "HAVE_LIBMETIS" to "1" Checking for optional headers [] in Download METIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Found header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking for headers ['metis.h'] in Download METIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['metis.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking include with compiler flags var CPPFLAGS ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['metis.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis/conftest.c:8:7: warning: extra tokens at end of #endif directive [-Wextra-tokens] #endif; ^ // 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include "metis.h" int main() { #if (IDXTYPEWIDTH != 32) #error incompatible IDXTYPEWIDTH #endif; return 0; } ================================================================================ TEST checkVersion from config.packages.metis(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:985) TESTING: checkVersion from config.packages.metis(config/BuildSystem/config/package.py:985) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "metis.h" ;petscpkgver(METIS_VER_MAJOR.METIS_VER_MINOR.METIS_VER_SUBMINOR); Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis/conftest.c For metis need <= 5.1.0 <= ================================================================================ TEST checkSharedLibrary from config.packages.metis(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:919) TESTING: checkSharedLibrary from config.packages.metis(config/BuildSystem/config/package.py:919) By default we don't care about checking if the library is shared child config.packages.metis 11.502970 ================================================================================ TEST alternateConfigureLibrary from config.packages.pragmatic(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001030 ================================================================================ TEST checkDependencies from config.packages.parmetis(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.parmetis(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.parmetis(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/parmetis.py:41) TESTING: configureLibrary from config.packages.parmetis(config/BuildSystem/config/packages/parmetis.py:41) ================================================================================== Checking for a functional parmetis Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Could not locate an existing copy of PARMETIS: ['git.metis', 'Triangle', 'zlib-1.2.11'] Downloading parmetis =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-parmetis.git for PARMETIS =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://bitbucket.org/petsc/pkg-parmetis.git /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Found a copy of PARMETIS in git.parmetis Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', 'v4.0.3-p6^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', 'v4.0.3-p6'] stdout: 475d8facbb324527c205f1f78a7c90bd160bddcd Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', '475d8facbb324527c205f1f78a7c90bd160bddcd'] PARMETIS was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Configuring PARMETIS with cmake, this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/local/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/Users/markadams/Codes/petsc/arch-macosx-gnu-g -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="/usr/local/Cellar/mpich/3.3.2/bin/mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0" -DCMAKE_C_FLAGS_DEBUG:STRING="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0" -DCMAKE_C_FLAGS_RELEASE:STRING="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0" -DCMAKE_CXX_COMPILER="/usr/local/Cellar/mpich/3.3.2/bin/mpicxx" -DCMAKE_CXX_FLAGS:STRING="-fstack-protector -fno-stack-check -g -O0 -std=c++11" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-fstack-protector -fno-stack-check -g -O0 -std=c++11" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-fstack-protector -fno-stack-check -g -O0 -std=c++11" -DBUILD_SHARED_LIBS=on -DGKLIB_PATH=../headers -DMETIS_PATH=/Users/markadams/Codes/petsc/arch-macosx-gnu-g -DMPI_INCLUDE_PATH="/usr/local/Cellar/mpich/3.3.2/include" -DSHARED=1 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON -DDEBUG=1 stdout: -- The C compiler identification is AppleClang 11.0.0.11000033 -- Check for working C compiler: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -- Check for working C compiler: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Configuring done -- Generating done -- Build files have been written to: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build =============================================================================== Compiling and installing PARMETIS; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make -j7 -l12.0 stdout: /usr/local/Cellar/cmake/3.16.5/bin/cmake -S/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis -B/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_progress_start /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/CMakeFiles /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/CMakeFiles/progress.marks /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all /Applications/Xcode.app/Contents/Developer/usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build && /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= Scanning dependencies of target parmetis /Applications/Xcode.app/Contents/Developer/usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build [ 4%] Building C object libparmetis/CMakeFiles/parmetis.dir/comm.c.o [ 4%] Building C object libparmetis/CMakeFiles/parmetis.dir/akwayfm.c.o [ 12%] Building C object libparmetis/CMakeFiles/parmetis.dir/balancemylink.c.o [ 12%] Building C object libparmetis/CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o [ 12%] Building C object libparmetis/CMakeFiles/parmetis.dir/ametis.c.o cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/comm.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/comm.c cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/balancemylink.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/balancemylink.c cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/ametis.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/ametis.c cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers 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-I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/weird.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/weird.c [ 95%] Building C object libparmetis/CMakeFiles/parmetis.dir/wspace.c.o cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include 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/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/serial.c [ 82%] Building C object libparmetis/CMakeFiles/parmetis.dir/stat.c.o cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/stat.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/stat.c [ 85%] Building C object libparmetis/CMakeFiles/parmetis.dir/timer.c.o cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/timer.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/timer.c [ 87%] Building C object libparmetis/CMakeFiles/parmetis.dir/util.c.o cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/util.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/util.c [ 90%] Building C object libparmetis/CMakeFiles/parmetis.dir/wave.c.o cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/wave.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/wave.c [ 92%] Building C object libparmetis/CMakeFiles/parmetis.dir/weird.c.o cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/weird.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/weird.c [ 95%] Building C object libparmetis/CMakeFiles/parmetis.dir/wspace.c.o cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/wspace.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/wspace.c [ 97%] Building C object libparmetis/CMakeFiles/parmetis.dir/xyzpart.c.o cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Dparmetis_EXPORTS -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/. -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -fPIC -o CMakeFiles/parmetis.dir/xyzpart.c.o -c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis/xyzpart.c [100%] Linking C shared library libparmetis.dylib cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_link_script CMakeFiles/parmetis.dir/link.txt --verbose=1 /usr/local/Cellar/mpich/3.3.2/bin/mpicc -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -dynamiclib -Wl,-headerpad_max_install_names -o libparmetis.dylib -install_name /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis/libparmetis.dylib CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o CMakeFiles/parmetis.dir/akwayfm.c.o CMakeFiles/parmetis.dir/ametis.c.o CMakeFiles/parmetis.dir/balancemylink.c.o CMakeFiles/parmetis.dir/comm.c.o CMakeFiles/parmetis.dir/csrmatch.c.o CMakeFiles/parmetis.dir/ctrl.c.o CMakeFiles/parmetis.dir/debug.c.o CMakeFiles/parmetis.dir/diffutil.c.o CMakeFiles/parmetis.dir/frename.c.o CMakeFiles/parmetis.dir/gkmetis.c.o CMakeFiles/parmetis.dir/gkmpi.c.o CMakeFiles/parmetis.dir/graph.c.o CMakeFiles/parmetis.dir/initbalance.c.o CMakeFiles/parmetis.dir/initmsection.c.o CMakeFiles/parmetis.dir/initpart.c.o CMakeFiles/parmetis.dir/kmetis.c.o CMakeFiles/parmetis.dir/kwayrefine.c.o CMakeFiles/parmetis.dir/match.c.o CMakeFiles/parmetis.dir/mdiffusion.c.o CMakeFiles/parmetis.dir/mesh.c.o CMakeFiles/parmetis.dir/mmetis.c.o CMakeFiles/parmetis.dir/move.c.o CMakeFiles/parmetis.dir/msetup.c.o CMakeFiles/parmetis.dir/node_refine.c.o CMakeFiles/parmetis.dir/ometis.c.o CMakeFiles/parmetis.dir/pspases.c.o CMakeFiles/parmetis.dir/redomylink.c.o CMakeFiles/parmetis.dir/remap.c.o CMakeFiles/parmetis.dir/renumber.c.o CMakeFiles/parmetis.dir/rmetis.c.o CMakeFiles/parmetis.dir/selectq.c.o CMakeFiles/parmetis.dir/serial.c.o CMakeFiles/parmetis.dir/stat.c.o CMakeFiles/parmetis.dir/timer.c.o CMakeFiles/parmetis.dir/util.c.o CMakeFiles/parmetis.dir/wave.c.o CMakeFiles/parmetis.dir/weird.c.o CMakeFiles/parmetis.dir/wspace.c.o CMakeFiles/parmetis.dir/xyzpart.c.o -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lmetis [100%] Built target parmetis /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_progress_start /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/CMakeFiles 0/usr/local/Cellar/cmake/3.16.5/bin/cmake -S/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis -B/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_progress_start /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/CMakeFiles /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/CMakeFiles/progress.marks /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all /Applications/Xcode.app/Contents/Developer/usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build && /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/libparmetis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build make[2]: Nothing to be done for `libparmetis/CMakeFiles/parmetis.dir/build'. [100%] Built target parmetis /usr/local/Cellar/cmake/3.16.5/bin/cmake -E cmake_progress_start /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.parmetis/petsc-build/CMakeFiles 0 /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Nothing to be done for `preinstall'. Install the project... /usr/local/Cellar/cmake/3.16.5/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/include/parmetis.h -- Installing: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libparmetis.dylib********End of Output of running make on PARMETIS ******* Checking for library in Download PARMETIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libparmetis.a'] Contents: ['bin', 'include', 'lib', 'externalpackages', 'share'] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ParMETIS_V3_PartKway] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libparmetis.a'] ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libmetis.a'] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_V3_PartKway(); static void _check_ParMETIS_V3_PartKway() { ParMETIS_V3_PartKway(); } int main() { _check_ParMETIS_V3_PartKway();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lparmetis -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lmetis -lc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" Checking for optional headers [] in Download PARMETIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Found header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking for headers ['parmetis.h'] in Download PARMETIS: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['parmetis.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking include with compiler flags var CPPFLAGS ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include', '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include', '/usr/local/Cellar/mpich/3.3.2/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['parmetis.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking for functions [ParMETIS_ComputeVertexSeparator] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libparmetis.a'] ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libmetis.a'] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_ComputeVertexSeparator(); static void _check_ParMETIS_ComputeVertexSeparator() { ParMETIS_ComputeVertexSeparator(); } int main() { _check_ParMETIS_ComputeVertexSeparator();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lparmetis -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lmetis -lc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" ================================================================================ TEST checkVersion from config.packages.parmetis(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:985) TESTING: checkVersion from config.packages.parmetis(config/BuildSystem/config/package.py:985) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.parmetis Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "parmetis.h" ;petscpkgver(PARMETIS_MAJOR_VERSION.PARMETIS_MINOR_VERSION.PARMETIS_SUBMINOR_VERSION); Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.parmetis/conftest.c For parmetis need <= 4.0.3 <= ================================================================================ TEST checkSharedLibrary from config.packages.parmetis(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:919) TESTING: checkSharedLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:919) By default we don't care about checking if the library is shared child config.packages.parmetis 7.826796 ================================================================================ TEST alternateConfigureLibrary from config.packages.Chaco(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.001016 ================================================================================ TEST checkDependencies from config.packages.hdf5(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.hdf5(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.hdf5(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/hdf5.py:82) TESTING: configureLibrary from config.packages.hdf5(config/BuildSystem/config/packages/hdf5.py:82) ================================================================================== Checking for a functional hdf5 Looking for HDF5 at git.hdf5, hg.hdf5 or a directory starting with ['hdf5'] Could not locate an existing copy of HDF5: ['git.metis', 'Triangle', 'zlib-1.2.11', 'git.parmetis'] Downloading hdf5 =============================================================================== Trying to download https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5.tar.gz for HDF5 =============================================================================== Downloading https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5.tar.gz to /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/_d_hdf5-1.10.5.tar.gz Extracting /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/_d_hdf5-1.10.5.tar.gz Running Executable WITHOUT threads to time it out Executing: cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages; chmod -R a+r hdf5-1.10.5;find hdf5-1.10.5 -type d -name "*" -exec chmod a+rx {} \; Looking for HDF5 at git.hdf5, hg.hdf5 or a directory starting with ['hdf5'] Found a copy of HDF5 in hdf5-1.10.5 All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5 HDF5 was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Running configure on HDF5; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./configure --prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-g MAKE=/usr/bin/make --libdir=/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib CC="/usr/local/Cellar/mpich/3.3.2/bin/mpicc" CFLAGS="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/usr/local/Cellar/mpich/3.3.2/bin/mpicxx" CXXFLAGS="-fstack-protector -fno-stack-check -g -O0 -std=c++11" --disable-fortran --disable-fc --disable-f77 --disable-f90 --enable-shared --with-default-api-version=v18 --enable-parallel --with-zlib=yes --with-szlib=no CPPFLAGS="-I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/usr/local/Cellar/mpich/3.3.2/include" LIBS="-Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz" stdout: checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... bin/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-apple-darwin19.3.0 checking host system type... x86_64-apple-darwin19.3.0 checking shell variables initial values... done checking if basename works... yes checking if xargs works... yes checking for cached host... none checking for config x86_64-apple-darwin19.3.0... no checking for config x86_64-apple-darwin19.3.0... no checking for config apple-darwin19.3.0... no checking for config apple-darwin19.3.0... no checking for config x86_64-darwin19.3.0... no checking for config x86_64-darwin19.3.0... no checking for config x86_64-apple... no checking for config darwin19.3.0... no checking for config darwin19.3.0... no checking for config apple... found No match to get fc_version_info and flags for No match to get cxx_version_info for /usr/local/Cellar/mpich/3.3.2/bin/mpicxx checking for config ./config/site-specific/host-MarksMac-221.local... no checking for config ./config/site-specific/host-local... no checking build mode... production checking for gcc... /usr/local/Cellar/mpich/3.3.2/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/local/Cellar/mpich/3.3.2/bin/mpicc accepts -g... yes checking for /usr/local/Cellar/mpich/3.3.2/bin/mpicc option to accept ISO C89... none needed checking whether /usr/local/Cellar/mpich/3.3.2/bin/mpicc understands -c and -o together... yes checking for style of include used by /usr/bin/make... GNU checking dependency style of /usr/local/Cellar/mpich/3.3.2/bin/mpicc... gcc3 checking if unsupported combinations of configure options are allowed... no checking how to run the C preprocessor... /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking whether byte ordering is bigendian... no checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of unsigned... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 0 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of __float128... 0 checking size of _Quad... 0 checking quadmath.h usability... no checking quadmath.h presence... no checking for quadmath.h... no checking maximum decimal precision for C... 21 checking if Fortran interface enabled... no checking whether we are using the GNU C++ compiler... yes checking whether /usr/local/Cellar/mpich/3.3.2/bin/mpicxx accepts -g... yes checking dependency style of /usr/local/Cellar/mpich/3.3.2/bin/mpicxx... gcc3 checking how to run the C++ preprocessor... /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -E checking if c++ interface enabled... no checking if the high-level library is enabled... yes checking whether /usr/bin/make sets $(MAKE)... (cached) yes checking for tr... /usr/bin/tr checking if srcdir= and time commands work together... yes checking if Java JNI interface enabled... no checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by /usr/local/Cellar/mpich/3.3.2/bin/mpicc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking how to convert x86_64-apple-darwin19.3.0 file names to x86_64-apple-darwin19.3.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin19.3.0 file names to toolchain format... func_convert_file_noop checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /usr/local/Cellar/mpich/3.3.2/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /usr/local/Cellar/mpich/3.3.2/bin/mpicc supports -fno-rtti -fno-exceptions... yes checking for /usr/local/Cellar/mpich/3.3.2/bin/mpicc option to produce PIC... -fno-common -DPIC checking if /usr/local/Cellar/mpich/3.3.2/bin/mpicc PIC flag -fno-common -DPIC works... yes checking if /usr/local/Cellar/mpich/3.3.2/bin/mpicc static flag -static works... no checking if /usr/local/Cellar/mpich/3.3.2/bin/mpicc supports -c -o file.o... yes checking if /usr/local/Cellar/mpich/3.3.2/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /usr/local/Cellar/mpich/3.3.2/bin/mpicc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin19.3.0 dyld checking how to hardcode library paths into programs... immediate checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking if we should install only statically linked executables... no checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes checking for ceil in -lm... yes checking for dlopen in -ldl... (cached) yes checking for ANSI C header files... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/stat.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/types.h... (cached) yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking setjmp.h usability... yes checking setjmp.h presence... yes checking for setjmp.h... yes checking features.h usability... no checking features.h presence... no checking for features.h... no checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for stdint.h... (cached) yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking mach/mach_time.h usability... yes checking mach/mach_time.h presence... yes checking for mach/mach_time.h... yes checking io.h usability... no checking io.h presence... no checking for io.h... no checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking sys/timeb.h usability... yes checking sys/timeb.h presence... yes checking for sys/timeb.h... yes checking if libtool needs -no-undefined flag to build shared libraries... no checking for _FILE_OFFSET_BITS value needed for large files... no checking size of int8_t... 1 checking size of uint8_t... 1 checking size of int_least8_t... 1 checking size of uint_least8_t... 1 checking size of int_fast8_t... 1 checking size of uint_fast8_t... 1 checking size of int16_t... 2 checking size of uint16_t... 2 checking size of int_least16_t... 2 checking size of uint_least16_t... 2 checking size of int_fast16_t... 2 checking size of uint_fast16_t... 2 checking size of int32_t... 4 checking size of uint32_t... 4 checking size of int_least32_t... 4 checking size of uint_least32_t... 4 checking size of int_fast32_t... 4 checking size of uint_fast32_t... 4 checking size of int64_t... 8 checking size of uint64_t... 8 checking size of int_least64_t... 8 checking size of uint_least64_t... 8 checking size of int_fast64_t... 8 checking size of uint_fast64_t... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of off_t... 8 checking size of bool... 1 checking size of time_t... 8 checking if dev_t is scalar... yes checking for dmalloc library... suppressed checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for compress2 in -lz... yes checking for compress2... yes checking for szlib... suppressed checking for thread safe support... no checking whether CLOCK_MONOTONIC is declared... yes checking for tm_gmtoff in struct tm... yes checking for global timezone variable... yes checking for st_blocks in struct stat... no checking for _getvideoconfig... no checking for gettextinfo... no checking for GetConsoleScreenBufferInfo... no checking for getpwuid... yes checking for _scrsize... no checking for ioctl... yes checking for struct videoconfig... no checking for struct text_info... no checking for TIOCGWINSZ... yes checking for TIOCGETD... yes checking for library containing clock_gettime... none required checking for alarm... yes checking for clock_gettime... yes checking for difftime... yes checking for fcntl... yes checking for flock... yes checking for fork... yes checking for frexpf... yes checking for frexpl... yes checking for gethostname... yes checking for getrusage... yes checking for gettimeofday... yes checking for lstat... yes checking for rand_r... yes checking for random... yes checking for setsysinfo... no checking for signal... yes checking for longjmp... yes checking for setjmp... yes checking for siglongjmp... yes checking for sigsetjmp... yes checking for sigprocmask... yes checking for snprintf... yes checking for srandom... yes checking for strdup... yes checking for symlink... yes checking for system... yes checking for strtoll... yes checking for strtoull... yes checking for tmpfile... yes checking for asprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for waitpid... yes checking for roundf... yes checking for lroundf... yes checking for llroundf... yes checking for round... yes checking for lround... yes checking for llround... yes checking for an ANSI C-conforming const... yes checking if the compiler understands __inline__... yes checking if the compiler understands __inline... yes checking if the compiler understands inline... yes checking for __attribute__ extension... yes checking for __func__ extension... yes checking for __FUNCTION__ extension... yes checking for C99 designated initialization support... yes checking how to print long long... %ld and %lu checking enable debugging symbols... no checking enable asserts... no checking enable developer warnings... no checking profiling... no checking optimization level... high checking for internal debug output... none checking whether function stack tracking is enabled... no checking for API tracing... no checking whether a memory checking tool will be used... no checking whether internal memory allocation sanity checking is used... no checking for parallel support files... provided by compiler checking whether a simple MPI-IO C program can be linked... yes checking prefix for running on one processor... checking prefix for running in parallel... mpiexec -n $${NPROCS:=6} checking for instrumented library... no checking for MPE... suppressed checking for MPI_Mprobe and MPI_Imrecv functions... yes checking for MPI_Get_elements_x and MPI_Type_size_x functions... yes checking whether O_DIRECT is declared... no checking for posix_memalign... yes checking if the direct I/O virtual file driver (VFD) is enabled... no checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin checking whether exception handling functions is checked during data conversions... yes checking whether data accuracy is guaranteed during data conversions... yes checking if the machine has window style path name... no checking if using special algorithm to convert long double to (unsigned) long values... no checking if using special algorithm to convert (unsigned) long to long double values... no checking if correctly converting long double to (unsigned) long long values... yes checking if correctly converting (unsigned) long long to long double values... yes checking if the system is IBM ppc64le and cannot correctly convert some long double values... no checking additional programs should be built... no checking if deprecated public symbols are available... yes checking which version of public symbols to use by default... v18 checking whether to perform strict file format checks... no checking for pread... yes checking for pwrite... yes checking whether to use pread/pwrite instead of read/write in certain VFDs... yes checking whether to have library information embedded in the executables... yes checking if alignment restrictions are strictly enforced... no configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/libhdf5.settings config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating test/H5srcdir_str.h config.status: creating test/testabort_fail.sh config.status: creating test/testcheck_version.sh config.status: creating test/testerror.sh config.status: creating test/testflushrefresh.sh config.status: creating test/testlibinfo.sh config.status: creating test/testlinks_env.sh config.status: creating test/testswmr.sh config.status: creating test/testvdsswmr.sh config.status: creating test/test_filter_plugin.sh config.status: creating test/test_usecases.sh config.status: creating testpar/Makefile config.status: creating testpar/testpflush.sh config.status: creating tools/Makefile config.status: creating tools/lib/Makefile config.status: creating tools/src/Makefile config.status: creating tools/src/h5dump/Makefile config.status: creating tools/src/h5import/Makefile config.status: creating tools/src/h5diff/Makefile config.status: creating tools/src/h5jam/Makefile config.status: creating tools/src/h5repack/Makefile config.status: creating tools/src/h5ls/Makefile config.status: creating tools/src/h5copy/Makefile config.status: creating tools/src/misc/Makefile config.status: creating tools/src/misc/h5cc config.status: creating tools/src/h5stat/Makefile config.status: creating tools/test/Makefile config.status: creating tools/test/h5dump/Makefile config.status: creating tools/test/h5dump/h5dump_plugin.sh config.status: creating tools/test/h5dump/testh5dump.sh config.status: creating tools/test/h5dump/testh5dumppbits.sh config.status: creating tools/test/h5dump/testh5dumpvds.sh config.status: creating tools/test/h5dump/testh5dumpxml.sh config.status: creating tools/test/h5ls/Makefile config.status: creating tools/test/h5ls/h5ls_plugin.sh config.status: creating tools/test/h5ls/testh5ls.sh config.status: creating tools/test/h5ls/testh5lsvds.sh config.status: creating tools/test/h5import/Makefile config.status: creating tools/test/h5import/h5importtestutil.sh config.status: creating tools/test/h5diff/Makefile config.status: creating tools/test/h5diff/h5diff_plugin.sh config.status: creating tools/test/h5diff/testh5diff.sh config.status: creating tools/test/h5diff/testph5diff.sh config.status: creating tools/src/h5format_convert/Makefile config.status: creating tools/test/h5format_convert/Makefile config.status: creating tools/test/h5format_convert/testh5fc.sh config.status: creating tools/test/h5jam/Makefile config.status: creating tools/test/h5jam/testh5jam.sh config.status: creating tools/test/h5repack/Makefile config.status: creating tools/test/h5repack/h5repack.sh config.status: creating tools/test/h5repack/h5repack_plugin.sh config.status: creating tools/test/h5copy/Makefile config.status: creating tools/test/h5copy/testh5copy.sh config.status: creating tools/test/misc/Makefile config.status: creating tools/test/misc/testh5clear.sh config.status: creating tools/test/misc/testh5mkgrp.sh config.status: creating tools/test/misc/testh5repart.sh config.status: creating tools/test/misc/vds/Makefile config.status: creating tools/test/h5stat/Makefile config.status: creating tools/test/h5stat/testh5stat.sh config.status: creating tools/test/perform/Makefile config.status: creating examples/Makefile config.status: creating examples/run-c-ex.sh config.status: creating examples/testh5cc.sh config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating c++/test/Makefile config.status: creating c++/test/H5srcdir_str.h config.status: creating c++/examples/Makefile config.status: creating c++/examples/run-c++-ex.sh config.status: creating c++/examples/testh5c++.sh config.status: creating fortran/Makefile config.status: creating fortran/src/h5fc config.status: creating fortran/src/Makefile config.status: creating fortran/src/H5fort_type_defines.h config.status: creating fortran/test/Makefile config.status: creating fortran/testpar/Makefile config.status: creating fortran/examples/Makefile config.status: creating fortran/examples/run-fortran-ex.sh config.status: creating fortran/examples/testh5fc.sh config.status: creating java/Makefile config.status: creating java/src/Makefile config.status: creating java/src/jni/Makefile config.status: creating java/test/Makefile config.status: creating java/test/junit.sh config.status: creating java/examples/Makefile config.status: creating java/examples/intro/Makefile config.status: creating java/examples/intro/JavaIntroExample.sh config.status: creating java/examples/datasets/Makefile config.status: creating java/examples/datasets/JavaDatasetExample.sh config.status: creating java/examples/datatypes/Makefile config.status: creating java/examples/datatypes/JavaDatatypeExample.sh config.status: creating java/examples/groups/Makefile config.status: creating java/examples/groups/JavaGroupExample.sh config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/test/Makefile config.status: creating hl/test/H5srcdir_str.h config.status: creating hl/tools/Makefile config.status: creating hl/tools/gif2h5/Makefile config.status: creating hl/tools/gif2h5/h52giftest.sh config.status: creating hl/tools/h5watch/Makefile config.status: creating hl/tools/h5watch/testh5watch.sh config.status: creating hl/examples/Makefile config.status: creating hl/examples/run-hlc-ex.sh config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating hl/c++/test/Makefile config.status: creating hl/c++/examples/Makefile config.status: creating hl/c++/examples/run-hlc++-ex.sh config.status: creating hl/fortran/Makefile config.status: creating hl/fortran/src/Makefile config.status: creating hl/fortran/test/Makefile config.status: creating hl/fortran/examples/Makefile config.status: creating hl/fortran/examples/run-hlfortran-ex.sh config.status: creating src/H5config.h config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands config.status: executing .classes commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.10.5 Configured on: Thu Mar 5 08:22:01 EST 2020 Configured by: markadams@MarksMac-221.local Host system: x86_64-apple-darwin19.3.0 Uname information: Darwin MarksMac-221.local 19.3.0 Darwin Kernel Version 19.3.0: Thu Jan 9 20:58:23 PST 2020; root:xnu-6153.81.5~1/RELEASE_X86_64 x86_64 Byte sex: little-endian Installation point: /Users/markadams/Codes/petsc/arch-macosx-gnu-g Compiling Options: ------------------ Build Mode: production Debugging Symbols: no Asserts: no Profiling: no Optimization Level: high Linking Options: ---------------- Libraries: static, shared Statically Linked Executables: LDFLAGS: H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lz -ldl -lm -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz Archiver: /usr/bin/ar AR_FLAGS: cr Ranlib: ranlib Languages: ---------- C: yes C Compiler: /usr/local/Cellar/mpich/3.3.2/bin/mpicc CPPFLAGS: -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/usr/local/Cellar/mpich/3.3.2/include H5_CPPFLAGS: -DNDEBUG -UH5_DEBUG_API AM_CPPFLAGS: C Flags: -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 H5 C Flags: AM C Flags: Shared C Library: yes Static C Library: yes Fortran: no C++: no Java: no Features: --------- Parallel HDF5: yes Parallel Filtered Dataset Writes: yes Large Parallel I/O: yes High-level library: yes Threadsafety: no Default API mapping: v18 With deprecated public symbols: yes I/O filters (external): deflate(zlib) MPE: Direct VFD: no dmalloc: no Packages w/ extra debug output: none API tracing: no Using memory checker: no Memory allocation sanity checks: no Function stack tracing: no Strict file format checks: no Optimization instrumentation: no =============================================================================== Running make on HDF5; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make clean stdout: Making clean in src test -z "libhdf5.la" || rm -f libhdf5.la rm -f ./so_locations rm -rf .libs _libs rm -f H5detect H5make_libsettings rm -f *.o test -z "H5Tinit.c H5lib_settings.c" || rm -f H5Tinit.c H5lib_settings.c test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in test rm -f testhdf5 cache cache_api cache_image cache_tagging lheap ohdr stab gheap evict_on_close farray earray btree2 fheap pool accum hyperslab istore bittests dt_arith page_buffer dtypes dsets chunk_info cmpd_dset filter_fail extend direct_chunk external efc objcopy links unlink twriteorder big mtime fillval mount flush1 flush2 app_ref enum set_extent ttsafe enc_dec_plist enc_dec_plist_cross_platform getname vfd ntypes dangle dtransform reserved cross_read freespace mf vds file_image unregister cache_logging cork swmr error_test err_compat tcheck_version testmeta accum_swmr_reader atomic_writer atomic_reader links_env filenotclosed del_many_dense_attrs flushrefresh use_append_chunk use_append_mchunks use_disable_mdc_flushes swmr_generator swmr_start_write swmr_reader swmr_writer swmr_remove_reader swmr_remove_writer swmr_addrem_writer swmr_sparse_reader swmr_sparse_writer swmr_check_compat_vfd vds_swmr_gen vds_swmr_reader vds_swmr_writer filter_plugin rm -rf .libs _libs test -z "libh5test.la libfilter_plugin1_dsets.la libfilter_plugin2_dsets.la libfilter_plugin3_dsets.la libfilter_plugin4_groups.la" || rm -f libh5test.la libfilter_plugin1_dsets.la libfilter_plugin2_dsets.la libfilter_plugin3_dsets.la libfilter_plugin4_groups.la rm -f ./so_locations rm -f *.o test -z "testhdf5.log cache.log cache_api.log cache_image.log cache_tagging.log lheap.log ohdr.log stab.log gheap.log evict_on_close.log farray.log earray.log btree2.log fheap.log pool.log accum.log hyperslab.log istore.log bittests.log dt_arith.log page_buffer.log dtypes.log dsets.log chunk_info.log cmpd_dset.log filter_fail.log extend.log direct_chunk.log external.log efc.log objcopy.log links.log unlink.log twriteorder.log big.log mtime.log fillval.log mount.log flush1.log flush2.log app_ref.log enum.log set_extent.log ttsafe.log enc_dec_plist.log enc_dec_plist_cross_platform.log getname.log vfd.log ntypes.log dangle.log dtransform.log reserved.log cross_read.log freespace.log mf.log vds.log file_image.log unregister.log cache_logging.log cork.log swmr.log testerror.log testlibinfo.log testcheck_version.log testlinks_env.log testswmr.log testvdsswmr.log testflushrefresh.log test_usecases.log testabort_fail.log test_filter_plugin.log" || rm -f testhdf5.log cache.log cache_api.log cache_image.log cache_tagging.log lheap.log ohdr.log stab.log gheap.log evict_on_close.log farray.log earray.log btree2.log fheap.log pool.log accum.log hyperslab.log istore.log bittests.log dt_arith.log page_buffer.log dtypes.log dsets.log chunk_info.log cmpd_dset.log filter_fail.log extend.log direct_chunk.log external.log efc.log objcopy.log links.log unlink.log twriteorder.log big.log mtime.log fillval.log mount.log flush1.log flush2.log app_ref.log enum.log set_extent.log ttsafe.log enc_dec_plist.log enc_dec_plist_cross_platform.log getname.log vfd.log ntypes.log dangle.log dtransform.log reserved.log cross_read.log freespace.log mf.log vds.log file_image.log unregister.log cache_logging.log cork.log swmr.log testerror.log testlibinfo.log testcheck_version.log testlinks_env.log testswmr.log testvdsswmr.log testflushrefresh.log test_usecases.log testabort_fail.log test_filter_plugin.log test -z "testhdf5.trs cache.trs cache_api.trs cache_image.trs cache_tagging.trs lheap.trs ohdr.trs stab.trs gheap.trs evict_on_close.trs farray.trs earray.trs btree2.trs fheap.trs pool.trs accum.trs hyperslab.trs istore.trs bittests.trs dt_arith.trs page_buffer.trs dtypes.trs dsets.trs chunk_info.trs cmpd_dset.trs filter_fail.trs extend.trs direct_chunk.trs external.trs efc.trs objcopy.trs links.trs unlink.trs twriteorder.trs big.trs mtime.trs fillval.trs mount.trs flush1.trs flush2.trs app_ref.trs enum.trs set_extent.trs ttsafe.trs enc_dec_plist.trs enc_dec_plist_cross_platform.trs getname.trs vfd.trs ntypes.trs dangle.trs dtransform.trs reserved.trs cross_read.trs freespace.trs mf.trs vds.trs file_image.trs unregister.trs cache_logging.trs cork.trs swmr.trs testerror.trs testlibinfo.trs testcheck_version.trs testlinks_env.trs testswmr.trs testvdsswmr.trs testflushrefresh.trs test_usecases.trs testabort_fail.trs test_filter_plugin.trs" || rm -f testhdf5.trs cache.trs cache_api.trs cache_image.trs cache_tagging.trs lheap.trs ohdr.trs stab.trs gheap.trs evict_on_close.trs farray.trs earray.trs btree2.trs fheap.trs pool.trs accum.trs hyperslab.trs istore.trs bittests.trs dt_arith.trs page_buffer.trs dtypes.trs dsets.trs chunk_info.trs cmpd_dset.trs filter_fail.trs extend.trs direct_chunk.trs external.trs efc.trs objcopy.trs links.trs unlink.trs twriteorder.trs big.trs mtime.trs fillval.trs mount.trs flush1.trs flush2.trs app_ref.trs enum.trs set_extent.trs ttsafe.trs enc_dec_plist.trs enc_dec_plist_cross_platform.trs getname.trs vfd.trs ntypes.trs dangle.trs dtransform.trs reserved.trs cross_read.trs freespace.trs mf.trs vds.trs file_image.trs unregister.trs cache_logging.trs cork.trs swmr.trs testerror.trs testlibinfo.trs testcheck_version.trs testlinks_env.trs testswmr.trs testvdsswmr.trs testflushrefresh.trs test_usecases.trs testabort_fail.trs test_filter_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 accum.h5 cmpd_dset.h5 compact_dataset.h5 dataset.h5 dset_offset.h5 max_compact_dataset.h5 simple.h5 set_local.h5 random_chunks.h5 huge_chunks.h5 chunk_cache.h5 big_chunk.h5 chunk_fast.h5 chunk_expand.h5 chunk_fixed.h5 copy_dcpl_newfile.h5 partial_chunks.h5 layout_extend.h5 zero_chunk.h5 chunk_single.h5 swmr_non_latest.h5 earray_hdr_fd.h5 farray_hdr_fd.h5 bt2_hdr_fd.h5 storage_size.h5 dls_01_strings.h5 extend.h5 istore.h5 extlinks*.h5 frspace.h5 links*.h5 sys_file1 tfile[1-7].h5 th5s[1-4].h5 lheap.h5 fheap.h5 ohdr.h5 stab.h5 extern_[1-5].h5 extern_[1-4][rw].raw gheap[0-4].h5 ohdr_min_a.h5 ohdr_min_b.h5 min_dset_ohdr_testfile.h5 dt_arith[1-2] links.h5 links[0-6]*.h5 extlinks[0-15].h5 tmp big.data big[0-9][0-9][0-9][0-9][0-9].h5 stdio.h5 sec2.h5 dtypes[0-9].h5 dtypes1[0].h5 dt_arith[1-2].h5 tattr.h5 tselect.h5 mtime.h5 unlink.h5 unicode.h5 coord.h5 fillval_[0-9].h5 fillval.raw mount_[0-9].h5 testmeta.h5 ttime.h5 trefer[1-3].h5 tvltypes.h5 tvlstr.h5 tvlstr2.h5 twriteorder.dat flush.h5 flush-swmr.h5 noflush.h5 noflush-swmr.h5 flush_extend.h5 flush_extend-swmr.h5 noflush_extend.h5 noflush_extend-swmr.h5 enum1.h5 titerate.h5 ttsafe.h5 tarray1.h5 tgenprop.h5 tmisc[0-9]*.h5 set_extent[1-5].h5 ext[12].bin getname.h5 getname[1-3].h5 sec2_file.h5 direct_file.h5 family_file000[0-3][0-9].h5 new_family_v16_000[0-3][0-9].h5 multi_file-[rs].h5 core_file filter_plugin.h5 new_move_[ab].h5 ntypes.h5 dangle.h5 error_test.h5 err_compat.h5 dtransform.h5 test_filters.h5 get_file_name.h5 tstint[1-2].h5 unlink_chunked.h5 btree2.h5 btree2_tmp.h5 objcopy_src.h5 objcopy_dst.h5 objcopy_ext.dat trefer1.h5 trefer2.h5 app_ref.h5 farray.h5 farray_tmp.h5 earray.h5 earray_tmp.h5 efc[0-5].h5 log_vfd_out.log new_multi_file_v16-r.h5 new_multi_file_v16-s.h5 split_get_file_image_test-m.h5 split_get_file_image_test-r.h5 file_image_core_test.h5.copy unregister_filter_1.h5 unregister_filter_2.h5 vds_virt.h5 vds_dapl.h5 vds_src_[0-1].h5 swmr_data.h5 use_use_append_chunk.h5 use_append_mchunks.h5 use_disable_mdc_flushes.h5 flushrefresh.h5 flushrefresh_VERIFICATION_START flushrefresh_VERIFICATION_CHECKPOINT1 flushrefresh_VERIFICATION_CHECKPOINT2 flushrefresh_VERIFICATION_DONE atomic_data accum_swmr_big.h5 ohdr_swmr.h5 test_swmr*.h5 cache_logging.h5 cache_logging.out vds_swmr.h5 vds_swmr_src_*.h5 swmr[0-2].h5 swmr_writer.out swmr_writer.log.* swmr_reader.out.* swmr_reader.log.* tbogus.h5.copy cache_image_test.h5 direct_chunk.h5 Making clean in testpar rm -f t_mpi t_bigio testphdf5 t_cache t_cache_image t_pread t_pshutdown t_prestart t_init_term t_shapesame t_filters_parallel t_pflush1 t_pflush2 rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 MPItest.h5 Para*.h5 bigio_test.h5 CacheTestDummy.h5 ShapeSameTest.h5 shutdown.h5 after_mpi_fin.h5 go Making clean in tools Making clean in lib rm -rf .libs _libs test -z "libh5tools.la" || rm -f libh5tools.la rm -f ./so_locations rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in src Making clean in h5diff rm -f h5diff ph5diff rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5ls rm -f h5ls rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5dump rm -f h5dump rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in misc rm -f h5debug h5repart h5mkgrp h5clear test -z "h5redeploy" || rm -f h5redeploy rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5import rm -f h5import rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5repack rm -f h5repack rm -rf .libs _libs test -z "libh5repack.la" || rm -f libh5repack.la rm -f ./so_locations rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5jam rm -f h5jam h5unjam rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5copy rm -f h5copy rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 Making clean in h5format_convert rm -f h5format_convert test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5stat rm -f h5stat test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in test Making clean in h5diff rm -f h5diffgentest rm -rf .libs _libs test -z "libdynlibdiff.la" || rm -f libdynlibdiff.la rm -f ./so_locations rm -f *.o test -z "h5diffgentest.log testh5diff.log h5diff_plugin.log" || rm -f h5diffgentest.log testh5diff.log h5diff_plugin.log test -z "h5diffgentest.trs testh5diff.trs h5diff_plugin.trs" || rm -f h5diffgentest.trs testh5diff.trs h5diff_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 expect_sorted actual_sorted Making clean in h5ls rm -rf .libs _libs test -z "libdynlibls.la" || rm -f libdynlibls.la rm -f ./so_locations rm -f *.o test -z "testh5ls.log testh5lsvds.log h5ls_plugin.log" || rm -f testh5ls.log testh5lsvds.log h5ls_plugin.log test -z "testh5ls.trs testh5lsvds.trs h5ls_plugin.trs" || rm -f testh5ls.trs testh5lsvds.trs h5ls_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5dump rm -f h5dumpgentest binread rm -rf .libs _libs test -z "libdynlibdump.la" || rm -f libdynlibdump.la rm -f ./so_locations rm -f *.o test -z "h5dumpgentest.log testh5dump.log testh5dumppbits.log testh5dumpvds.log testh5dumpxml.log h5dump_plugin.log" || rm -f h5dumpgentest.log testh5dump.log testh5dumppbits.log testh5dumpvds.log testh5dumpxml.log h5dump_plugin.log test -z "h5dumpgentest.trs testh5dump.trs testh5dumppbits.trs testh5dumpvds.trs testh5dumpxml.trs h5dump_plugin.trs" || rm -f h5dumpgentest.trs testh5dump.trs testh5dumppbits.trs testh5dumpvds.trs testh5dumpxml.trs h5dump_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.bin Making clean in misc Making clean in vds rm -f UC_1_one_dim_gen UC_2_two_dims_gen UC_3_gaps_gen UC_4_printf_gen UC_5_stride_gen rm -rf .libs _libs rm -f *.o test -z "UC_1_one_dim_gen.log UC_2_two_dims_gen.log UC_3_gaps_gen.log UC_4_printf_gen.log UC_5_stride_gen.log" || rm -f UC_1_one_dim_gen.log UC_2_two_dims_gen.log UC_3_gaps_gen.log UC_4_printf_gen.log UC_5_stride_gen.log test -z "UC_1_one_dim_gen.trs UC_2_two_dims_gen.trs UC_3_gaps_gen.trs UC_4_printf_gen.trs UC_5_stride_gen.trs" || rm -f UC_1_one_dim_gen.trs UC_2_two_dims_gen.trs UC_3_gaps_gen.trs UC_4_printf_gen.trs UC_5_stride_gen.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 rm -f h5repart_gentest h5clear_gentest talign repart_test clear_open_chk rm -rf .libs _libs rm -f *.o test -z "h5repart_gentest.log h5clear_gentest.log talign.log testh5repart.log testh5mkgrp.log testh5clear.log" || rm -f h5repart_gentest.log h5clear_gentest.log talign.log testh5repart.log testh5mkgrp.log testh5clear.log test -z "h5repart_gentest.trs h5clear_gentest.trs talign.trs testh5repart.trs testh5mkgrp.trs testh5clear.trs" || rm -f h5repart_gentest.trs h5clear_gentest.trs talign.trs testh5repart.trs testh5mkgrp.trs testh5clear.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 append.log Making clean in h5import rm -f h5importtest rm -rf .libs _libs rm -f *.o test -z "h5importtest.log h5importtestutil.log" || rm -f h5importtest.log h5importtestutil.log test -z "h5importtest.trs h5importtestutil.trs" || rm -f h5importtest.trs h5importtestutil.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.bin Making clean in h5repack rm -rf .libs _libs test -z "libdynlibadd.la libdynlibvers.la" || rm -f libdynlibadd.la libdynlibvers.la rm -f ./so_locations rm -f h5repacktst testh5repack_detect_szip rm -f *.o test -z "h5repack.log h5repack_plugin.log" || rm -f h5repack.log h5repack_plugin.log test -z "h5repack.trs h5repack_plugin.trs" || rm -f h5repack.trs h5repack_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.bin testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5 Making clean in h5jam rm -f tellub h5jamgentest getub rm -rf .libs _libs rm -f *.o test -z "testh5jam.log" || rm -f testh5jam.log test -z "testh5jam.trs" || rm -f testh5jam.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 testfiles/h5jam-*-sav testfiles/h5unjam-*-sav Making clean in h5copy rm -f h5copygentest rm -rf .libs _libs rm -f *.o test -z "h5copygentest.log testh5copy.log" || rm -f h5copygentest.log testh5copy.log test -z "h5copygentest.trs testh5copy.trs" || rm -f h5copygentest.trs testh5copy.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 Making clean in h5format_convert rm -f h5fc_gentest h5fc_chk_idx test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "h5fc_gentest.log testh5fc.log" || rm -f h5fc_gentest.log testh5fc.log test -z "h5fc_gentest.trs testh5fc.trs" || rm -f h5fc_gentest.trs testh5fc.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 Making clean in h5stat rm -f h5stat_gentest test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "h5stat_gentest.log testh5stat.log" || rm -f h5stat_gentest.log testh5stat.log test -z "h5stat_gentest.trs testh5stat.trs" || rm -f h5stat_gentest.trs testh5stat.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 Making clean in perform rm -f h5perf_serial h5perf rm -f iopipe chunk overhead zip_perf perf_meta perf test -z "*.h5 *.raw *.dat x-gnuplot perftest.out" || rm -f *.h5 *.raw *.dat x-gnuplot perftest.out rm -rf .libs _libs rm -f *.o test -z "iopipe.log chunk.log overhead.log zip_perf.log perf_meta.log h5perf_serial.log" || rm -f iopipe.log chunk.log overhead.log zip_perf.log perf_meta.log h5perf_serial.log test -z "iopipe.trs chunk.trs overhead.trs zip_perf.trs perf_meta.trs h5perf_serial.trs" || rm -f iopipe.trs chunk.trs overhead.trs zip_perf.trs perf_meta.trs h5perf_serial.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in . rm -rf .libs _libs rm -f *.lo if test -d ii_files; then \ rm -f -rf ii_files; \ fi Making clean in hl Making clean in src test -z "libhdf5_hl.la" || rm -f libhdf5_hl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in test rm -f test_lite test_image test_file_image test_table test_ds test_packet test_ld test_dset_append test_h5do_compat rm -rf .libs _libs rm -f *.o test -z "test_lite.log test_image.log test_file_image.log test_table.log test_ds.log test_packet.log test_ld.log test_dset_append.log test_h5do_compat.log" || rm -f test_lite.log test_image.log test_file_image.log test_table.log test_ds.log test_packet.log test_ld.log test_dset_append.log test_h5do_compat.log test -z "test_lite.trs test_image.trs test_file_image.trs test_table.trs test_ds.trs test_packet.trs test_ld.trs test_dset_append.trs test_h5do_compat.trs" || rm -f test_lite.trs test_image.trs test_file_image.trs test_table.trs test_ds.trs test_packet.trs test_ld.trs test_dset_append.trs test_h5do_compat.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 combine_tables[1-2].h5 test_ds[1-9].h5 test_ds10.h5 test_image[1-3].h5 file_img[1-2].h5 test_lite[1-4].h5 test_table.h5 test_packet_table.h5 test_packet_compress.h5 test_detach.h5 test_packet_table_vlen.h5 testfl_packet_table_vlen.h5 test_append.h5 h5do_compat.h5 Making clean in tools Making clean in gif2h5 rm -f gif2h5 h52gif rm -rf .libs _libs rm -f h52gifgentst rm -f *.o test -z "h52giftest.log" || rm -f h52giftest.log test -z "h52giftest.trs" || rm -f h52giftest.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.gif Making clean in h5watch rm -f h5watch rm -rf .libs _libs rm -f swmr_check_compat_vfd h5watchgentest extend_dset rm -f *.o test -z "testh5watch.log" || rm -f testh5watch.log test -z "testh5watch.trs" || rm -f testh5watch.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Running Executable WITHOUT threads to time it out Executing: /usr/bin/make -j7 -l12.0 stdout: Making all in src /Applications/Xcode.app/Contents/Developer/usr/bin/make all-am CC H5.lo CC H5dbg.lo CC H5checksum.lo CC H5system.lo CC H5timer.lo CC H5trace.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5ACdbg.lo CC H5ACproxy_entry.lo CC H5B.lo CC H5Bcache.lo CC H5Bdbg.lo CC H5B2.lo CC H5B2cache.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2int.lo CC H5B2internal.lo CC H5B2leaf.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5Cdbg.lo CC H5Cepoch.lo CC H5Cimage.lo CC H5Clog.lo CC H5Clog_json.lo CC H5Clog_trace.lo CC H5Cprefetched.lo CC H5Cquery.lo CC H5Ctag.lo CC H5Ctest.lo CC H5CS.lo CC H5CX.lo CC H5D.lo CC H5Dbtree.lo CC H5Dbtree2.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Dearray.lo CC H5Defl.lo CC H5Dfarray.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dnone.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dsingle.lo CC H5Dtest.lo CC H5Dvirtual.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5EA.lo CC H5EAcache.lo CC H5EAdbg.lo CC H5EAdblkpage.lo CC H5EAdblock.lo CC H5EAhdr.lo CC H5EAiblock.lo CC H5EAint.lo CC H5EAsblock.lo CC H5EAstat.lo CC H5EAtest.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fdeprec.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fint.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fspace.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FA.lo CC H5FAcache.lo CC H5FAdbg.lo CC H5FAdblock.lo CC H5FAdblkpage.lo CC H5FAhdr.lo CC H5FAint.lo CC H5FAstat.lo CC H5FAtest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDfamily.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmulti.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDstdio.lo CC H5FDtest.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSint.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HLprfx.lo CC H5HLdblk.lo CC H5HP.lo CC H5I.lo CC H5Itest.lo CC H5L.lo CC H5Lexternal.lo CC H5make_libsettings.o CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5MP.lo CC H5MPtest.lo CC H5O.lo CC H5Odeprec.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ocache_image.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oflush.lo CC H5Ofsinfo.lo CC H5Oginfo.lo CC H5Oint.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Oshmesg.lo CC H5Ostab.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pencdec.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PB.lo CC H5PL.lo CC H5PLint.lo CC H5PLpath.lo CC H5PLplugin_cache.lo CC H5R.lo CC H5Rint.lo CC H5Rdeprec.lo CC H5RS.lo CC H5UC.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Shyper.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5ST.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5detect.o CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5VM.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zscaleoffset.lo CC H5Zszip.lo CC H5Ztrans.lo CC H5ACmpio.lo CC H5Cmpio.lo CC H5Dmpio.lo CC H5Fmpi.lo CC H5FDmpi.lo CC H5FDmpio.lo CC H5Smpio.lo CCLD H5make_libsettings CCLD H5detect LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5make_libsettings > H5lib_settings.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5lib_settings.c ; exit 1) LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5detect > H5Tinit.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5Tinit.c ; exit 1) CC H5lib_settings.lo CC H5Tinit.lo CCLD libhdf5.la Making all in test CC h5test.lo CC cache_common.lo CC testframe.lo CC filter_plugin1_dsets.lo CC swmr_common.lo CC filter_plugin2_dsets.lo CC filter_plugin3_dsets.lo CC filter_plugin4_groups.lo CC testhdf5.o CC tarray.o CC tattr.o CC tchecksum.o CC tconfig.o CC tfile.o CC tgenprop.o CC th5o.o CC th5s.o CC tcoords.o CC theap.o CC tid.o CC titerate.o CC tmeta.o CC tmisc.o CC trefer.o CC trefstr.o CC tselect.o CC tskiplist.o CC tsohm.o CC ttime.o CC ttst.o CC tunicode.o CC tvlstr.o CC tvltypes.o CC cache.o CC cache_api.o CC cache_image.o CC genall5.o CC cache_tagging.o CC lheap.o CC ohdr.o CC stab.o CC gheap.o CC evict_on_close.o CC farray.o CC earray.o CC btree2.o CC fheap.o CC pool.o CC accum.o CC hyperslab.o CC istore.o CC bittests.o CC dt_arith.o CC page_buffer.o CC dtypes.o CC dsets.o CC chunk_info.o CC cmpd_dset.o CC filter_fail.o CC extend.o CC direct_chunk.o CC external.o CC efc.o CC objcopy.o CC links.o CC unlink.o CC twriteorder.o CC big.o CC mtime.o CC fillval.o CC mount.o CC flush1.o CC flush2.o CC app_ref.o CC enum.o CC set_extent.o CC ttsafe.o CC ttsafe_dcreate.o CC ttsafe_error.o CC ttsafe_cancel.o CC ttsafe_acreate.o CC enc_dec_plist.o CC enc_dec_plist_cross_platform.o CC getname.o CC vfd.o CC ntypes.o CC dangle.o CC dtransform.o CC reserved.o CC cross_read.o CC freespace.o CC mf.o CC vds.o CC file_image.o CC unregister.o CC cache_logging.o CC cork.o CC swmr.o CC error_test.o CC err_compat.o CC tcheck_version.o CC testmeta.o CC accum_swmr_reader.o CC atomic_writer.o CC atomic_reader.o CC links_env.o CC filenotclosed.o CC del_many_dense_attrs.o CC flushrefresh.o CC use_append_chunk.o CC use_common.o CC use_append_mchunks.o CC swmr_generator.o CC use_disable_mdc_flushes.o CC swmr_start_write.o CC swmr_reader.o CC swmr_writer.o CC swmr_remove_reader.o CC swmr_remove_writer.o CC swmr_addrem_writer.o CC swmr_sparse_reader.o CC swmr_sparse_writer.o CC swmr_check_compat_vfd.o CC vds_swmr_gen.o CC vds_swmr_reader.o CC vds_swmr_writer.o CC filter_plugin.o CCLD libh5test.la CCLD libfilter_plugin1_dsets.la CCLD libfilter_plugin2_dsets.la CCLD libfilter_plugin3_dsets.la CCLD libfilter_plugin4_groups.la CCLD cache CCLD testhdf5 CCLD cache_api CCLD cache_image CCLD cache_tagging CCLD lheap CCLD ohdr CCLD stab CCLD gheap CCLD evict_on_close CCLD farray CCLD earray CCLD btree2 CCLD pool CCLD fheap CCLD hyperslab CCLD accum CCLD istore CCLD bittests CCLD dt_arith CCLD page_buffer CCLD dtypes CCLD dsets CCLD chunk_info CCLD cmpd_dset CCLD filter_fail CCLD extend CCLD direct_chunk CCLD external CCLD efc CCLD objcopy CCLD links CCLD unlink CCLD twriteorder CCLD big CCLD mtime CCLD fillval CCLD mount CCLD flush1 CCLD flush2 CCLD app_ref CCLD enum CCLD set_extent CCLD ttsafe CCLD enc_dec_plist CCLD enc_dec_plist_cross_platform CCLD getname CCLD vfd CCLD ntypes CCLD dangle CCLD dtransform CCLD reserved CCLD cross_read CCLD freespace CCLD mf CCLD vds CCLD file_image CCLD unregister CCLD cache_logging CCLD cork CCLD swmr CCLD error_test CCLD err_compat CCLD tcheck_version CCLD testmeta CCLD accum_swmr_reader CCLD atomic_writer CCLD atomic_reader CCLD links_env CCLD filenotclosed CCLD del_many_dense_attrs CCLD use_append_chunk CCLD flushrefresh CCLD use_append_mchunks CCLD use_disable_mdc_flushes CCLD swmr_generator CCLD swmr_start_write CCLD swmr_reader CCLD swmr_writer CCLD swmr_remove_reader CCLD swmr_remove_writer CCLD swmr_addrem_writer CCLD swmr_sparse_reader CCLD swmr_sparse_writer CCLD swmr_check_compat_vfd CCLD vds_swmr_gen CCLD vds_swmr_reader CCLD vds_swmr_writer CCLD filter_plugin Making all in testpar CC t_mpi.o CC t_bigio.o CC testphdf5.o CC t_file.o CC t_dset.o CC t_file_image.o CC t_mdset.o CC t_ph5basic.o CC t_coll_chunk.o CC t_span_tree.o CC t_chunk_alloc.o CC t_filter_read.o CC t_prop.o CC t_coll_md_read.o CC t_cache.o CC t_cache_image.o CC t_pread.o CC t_pshutdown.o CC t_prestart.o CC t_init_term.o CC t_shapesame.o CC t_filters_parallel.o CC t_pflush1.o CCLD t_mpi CCLD t_bigio CCLD testphdf5 CCLD t_cache CCLD t_cache_image CCLD t_pshutdown CCLD t_init_term CCLD t_prestart CCLD t_shapesame CCLD t_filters_parallel CC t_pflush2.o CCLD t_pflush1 CCLD t_pflush2 CCLD t_pread Making all in tools Making all in lib CC h5tools.lo CC h5tools_dump.lo CC h5tools_str.lo CC h5diff.lo CC h5tools_utils.lo CC h5diff_array.lo CC h5diff_attr.lo CC h5diff_dset.lo CC h5diff_util.lo CC h5trav.lo CC h5tools_filters.lo CC h5tools_ref.lo CC h5tools_type.lo CC io_timer.lo CCLD libh5tools.la Making all in src Making all in h5diff CC h5diff_main.o CC h5diff_common.o CC ph5diff_main.o CCLD ph5diff CCLD h5diff Making all in h5ls CC h5ls.o CCLD h5ls Making all in h5dump CC h5dump.o CC h5dump_ddl.o CC h5dump_xml.o CCLD h5dump Making all in misc CC h5debug.o CC h5repart.o CC h5mkgrp.o CC h5clear.o CCLD h5repart CCLD h5clear CCLD h5mkgrp CCLD h5debug Making all in h5import CC h5import.o CCLD h5import Making all in h5repack CC h5repack_copy.lo CC h5repack.lo CC h5repack_filters.lo CC h5repack_opttable.lo CC h5repack_parse.lo CC h5repack_refs.lo CC h5repack_verify.lo CC h5repack_main.o CCLD libh5repack.la CCLD h5repack Making all in h5jam CC h5jam.o CC h5unjam.o CCLD h5unjam CCLD h5jam Making all in h5copy CC h5copy.o CCLD h5copy Making all in h5format_convert CC h5format_convert.o CCLD h5format_convert Making all in h5stat CC h5stat.o CCLD h5stat make[3]: Nothing to be done for `all-am'. Making all in test Making all in h5diff CC dynlib_diff.lo CC h5diffgentest.o CCLD h5diffgentest CCLD libdynlibdiff.la Making all in h5ls CC dynlib_ls.lo CCLD libdynlibls.la Making all in h5dump CC dynlib_dump.lo CC h5dumpgentest.o CC binread.o CCLD binread CCLD h5dumpgentest CCLD libdynlibdump.la Making all in misc Making all in vds CC UC_1_one_dim_gen.o CC UC_2_two_dims_gen.o CC UC_3_gaps_gen.o CC UC_5_stride_gen.o CC UC_4_printf_gen.o CCLD UC_1_one_dim_gen CCLD UC_4_printf_gen CCLD UC_5_stride_gen CCLD UC_3_gaps_gen CCLD UC_2_two_dims_gen CC h5repart_gentest.o CC talign.o CC h5clear_gentest.o CC repart_test.o CC clear_open_chk.o CCLD clear_open_chk CCLD h5clear_gentest CCLD h5repart_gentest CCLD talign CCLD repart_test Making all in h5import CC h5importtest.o CCLD h5importtest Making all in h5repack CC dynlib_rpk.lo CC dynlib_vrpk.lo CC h5repacktst.o CC testh5repack_detect_szip.o CCLD testh5repack_detect_szip CCLD h5repacktst CCLD libdynlibadd.la CCLD libdynlibvers.la Making all in h5jam CC tellub.o CC h5jamgentest.o CC getub.o CCLD tellub CCLD getub CCLD h5jamgentest Making all in h5copy CC h5copygentest.o CCLD h5copygentest Making all in h5format_convert CC h5fc_gentest.o CC h5fc_chk_idx.o CCLD h5fc_chk_idx CCLD h5fc_gentest Making all in h5stat CC h5stat_gentest.o CCLD h5stat_gentest Making all in perform CC sio_perf.o CC sio_engine.o CC pio_perf.o CC pio_engine.o CC iopipe.o CC chunk.o CC overhead.o CC zip_perf.o CC perf_meta.o CC perf.o CCLD h5perf_serial CCLD iopipe CCLD chunk CCLD overhead CCLD h5perf CCLD zip_perf CCLD perf_meta CCLD perf make[3]: Nothing to be done for `all-am'. make[2]: Nothing to be done for `all-am'. Making all in . make[1]: Nothing to be done for `all-am'. Making all in hl Making all in src CC H5DO.lo CC H5DS.lo CC H5IM.lo CC H5LT.lo CC H5LTanalyze.lo CC H5LTparse.lo CC H5PT.lo CC H5TB.lo CC H5LD.lo CCLD libhdf5_hl.la Making all in test CC test_lite.o CC test_file_image.o CC test_image.o CC test_table.o CC test_packet.o CC test_ds.o CC test_packet_vlen.o CC test_ld.o CC test_dset_append.o CC test_h5do_compat.o CCLD test_image CCLD test_lite CCLD test_file_image CCLD test_table CCLD test_ds CCLD test_packet CCLD test_h5do_compat CCLD test_ld CCLD test_dset_append Making all in tools Making all in gif2h5 CC gif2hdf.o CC decompress.o CC gif2mem.o CC gifread.o CC writehdf.o CC hdf2gif.o CC hdfgifwr.o CC h52gifgentst.o CCLD h52gif CCLD gif2h5 CCLD h52gifgentst Making all in h5watch CC h5watch.o CC swmr_check_compat_vfd.o CC h5watchgentest.o CC extend_dset-extend_dset.o CCLD swmr_check_compat_vfd CCLD h5watchgentest CCLD extend_dset CCLD h5watch make[3]: Nothing to be done for `all-am'. make[2]: Nothing to be done for `all-am'. =============================================================================== Running make install on HDF5; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make install stdout: Making install in src ../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libhdf5.la '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' libtool: install: /usr/bin/install -c .libs/libhdf5.103.dylib /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.103.dylib libtool: install: (cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib && { ln -s -f libhdf5.103.dylib libhdf5.dylib || { rm -f libhdf5.dylib && ln -s libhdf5.103.dylib libhdf5.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5.lai /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.la libtool: install: /usr/bin/install -c .libs/libhdf5.a /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.a libtool: install: chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.a libtool: install: ranlib /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.a ../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include' /usr/bin/install -c -m 644 hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5version.h H5Apublic.h H5ACpublic.h H5Cpublic.h H5Dpublic.h H5Epubgen.h H5Epublic.h H5Fpublic.h H5FDpublic.h H5FDcore.h H5FDdirect.h H5FDfamily.h H5FDlog.h H5FDmpi.h H5FDmpio.h H5FDmulti.h H5FDsec2.h H5FDstdio.h H5FDwindows.h H5Gpublic.h H5Ipublic.h H5Lpublic.h H5MMpublic.h H5Opublic.h H5Ppublic.h H5PLextern.h H5PLpublic.h H5Rpublic.h H5Spublic.h H5Tpublic.h H5Zpublic.h '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include' ../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' /usr/bin/install -c -m 644 libhdf5.settings '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' Making install in test make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. Making install in testpar make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. Making install in tools Making install in lib make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. Making install in src Making install in h5diff ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5diff ph5diff '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5diff /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5diff libtool: install: /usr/bin/install -c .libs/ph5diff /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/ph5diff make[4]: Nothing to be done for `install-data-am'. Making install in h5ls ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5ls '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5ls /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5ls make[4]: Nothing to be done for `install-data-am'. Making install in h5dump ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5dump '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5dump /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5dump make[4]: Nothing to be done for `install-data-am'. Making install in misc ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5debug h5repart h5mkgrp h5clear '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5debug /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5debug libtool: install: /usr/bin/install -c .libs/h5repart /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5repart libtool: install: /usr/bin/install -c .libs/h5mkgrp /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5mkgrp libtool: install: /usr/bin/install -c .libs/h5clear /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5clear ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /usr/bin/install -c h5redeploy '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' make[4]: Nothing to be done for `install-data-am'. Making install in h5import ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5import '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5import /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5import make[4]: Nothing to be done for `install-data-am'. Making install in h5repack ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5repack '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5repack /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5repack make[4]: Nothing to be done for `install-data-am'. Making install in h5jam ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5jam h5unjam '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5jam /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5jam libtool: install: /usr/bin/install -c .libs/h5unjam /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5unjam make[4]: Nothing to be done for `install-data-am'. Making install in h5copy ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5copy '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5copy /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5copy make[4]: Nothing to be done for `install-data-am'. Making install in h5format_convert ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5format_convert '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5format_convert /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5format_convert make[4]: Nothing to be done for `install-data-am'. Making install in h5stat ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5stat '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5stat /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5stat make[4]: Nothing to be done for `install-data-am'. make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in test Making install in h5diff make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5ls make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5dump make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in misc Making install in vds make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. Making install in h5import make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5repack make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5jam make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5copy make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5format_convert make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5stat make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in perform ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5perf_serial h5perf '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5perf_serial /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5perf_serial libtool: install: /usr/bin/install -c .libs/h5perf /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5perf make[4]: Nothing to be done for `install-data-am'. make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. Making install in . make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. Making install in hl Making install in src ../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libhdf5_hl.la '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' libtool: install: /usr/bin/install -c .libs/libhdf5_hl.100.dylib /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.100.dylib libtool: install: (cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib && { ln -s -f libhdf5_hl.100.dylib libhdf5_hl.dylib || { rm -f libhdf5_hl.dylib && ln -s libhdf5_hl.100.dylib libhdf5_hl.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5_hl.lai /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.la libtool: install: /usr/bin/install -c .libs/libhdf5_hl.a /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.a libtool: install: chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.a libtool: install: ranlib /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.a ../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include' /usr/bin/install -c -m 644 hdf5_hl.h H5DOpublic.h H5IMpublic.h H5LTpublic.h H5TBpublic.h H5DSpublic.h H5PTpublic.h H5LDpublic.h '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include' Making install in test make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. Making install in tools Making install in gif2h5 ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c gif2h5 h52gif '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/gif2h5 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/gif2h5 libtool: install: /usr/bin/install -c .libs/h52gif /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h52gif make[4]: Nothing to be done for `install-data-am'. Making install in h5watch ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5watch '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5watch /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5watch make[4]: Nothing to be done for `install-data-am'. make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. for d in examples hl; do \ (cd $d && /Applications/Xcode.app/Contents/Developer/usr/bin/make install-examples) || exit 1; \ done ../bin/mkdirs /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c for d in examples ; do \ (cd $d && /Applications/Xcode.app/Contents/Developer/usr/bin/make install-examples) || exit 1; \ done ../../bin/mkdirs /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c ********Output of running make on HDF5 follows ******* checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... bin/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-apple-darwin19.3.0 checking host system type... x86_64-apple-darwin19.3.0 checking shell variables initial values... done checking if basename works... yes checking if xargs works... yes checking for cached host... none checking for config x86_64-apple-darwin19.3.0... no checking for config x86_64-apple-darwin19.3.0... no checking for config apple-darwin19.3.0... no checking for config apple-darwin19.3.0... no checking for config x86_64-darwin19.3.0... no checking for config x86_64-darwin19.3.0... no checking for config x86_64-apple... no checking for config darwin19.3.0... no checking for config darwin19.3.0... no checking for config apple... found No match to get fc_version_info and flags for No match to get cxx_version_info for /usr/local/Cellar/mpich/3.3.2/bin/mpicxx checking for config ./config/site-specific/host-MarksMac-221.local... no checking for config ./config/site-specific/host-local... no checking build mode... production checking for gcc... /usr/local/Cellar/mpich/3.3.2/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/local/Cellar/mpich/3.3.2/bin/mpicc accepts -g... yes checking for /usr/local/Cellar/mpich/3.3.2/bin/mpicc option to accept ISO C89... none needed checking whether /usr/local/Cellar/mpich/3.3.2/bin/mpicc understands -c and -o together... yes checking for style of include used by /usr/bin/make... GNU checking dependency style of /usr/local/Cellar/mpich/3.3.2/bin/mpicc... gcc3 checking if unsupported combinations of configure options are allowed... no checking how to run the C preprocessor... /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking whether byte ordering is bigendian... no checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of unsigned... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 0 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of __float128... 0 checking size of _Quad... 0 checking quadmath.h usability... no checking quadmath.h presence... no checking for quadmath.h... no checking maximum decimal precision for C... 21 checking if Fortran interface enabled... no checking whether we are using the GNU C++ compiler... yes checking whether /usr/local/Cellar/mpich/3.3.2/bin/mpicxx accepts -g... yes checking dependency style of /usr/local/Cellar/mpich/3.3.2/bin/mpicxx... gcc3 checking how to run the C++ preprocessor... /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -E checking if c++ interface enabled... no checking if the high-level library is enabled... yes checking whether /usr/bin/make sets $(MAKE)... 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examples/testh5cc.sh config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating c++/test/Makefile config.status: creating c++/test/H5srcdir_str.h config.status: creating c++/examples/Makefile config.status: creating c++/examples/run-c++-ex.sh config.status: creating c++/examples/testh5c++.sh config.status: creating fortran/Makefile config.status: creating fortran/src/h5fc config.status: creating fortran/src/Makefile config.status: creating fortran/src/H5fort_type_defines.h config.status: creating fortran/test/Makefile config.status: creating fortran/testpar/Makefile config.status: creating fortran/examples/Makefile config.status: creating fortran/examples/run-fortran-ex.sh config.status: creating fortran/examples/testh5fc.sh config.status: creating java/Makefile config.status: creating java/src/Makefile config.status: creating java/src/jni/Makefile config.status: creating java/test/Makefile config.status: creating java/test/junit.sh config.status: creating java/examples/Makefile config.status: creating java/examples/intro/Makefile config.status: creating java/examples/intro/JavaIntroExample.sh config.status: creating java/examples/datasets/Makefile config.status: creating java/examples/datasets/JavaDatasetExample.sh config.status: creating java/examples/datatypes/Makefile config.status: creating java/examples/datatypes/JavaDatatypeExample.sh config.status: creating java/examples/groups/Makefile config.status: creating java/examples/groups/JavaGroupExample.sh config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/test/Makefile config.status: creating hl/test/H5srcdir_str.h config.status: creating hl/tools/Makefile config.status: creating hl/tools/gif2h5/Makefile config.status: creating hl/tools/gif2h5/h52giftest.sh config.status: creating hl/tools/h5watch/Makefile config.status: creating hl/tools/h5watch/testh5watch.sh config.status: creating hl/examples/Makefile config.status: creating hl/examples/run-hlc-ex.sh config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating hl/c++/test/Makefile config.status: creating hl/c++/examples/Makefile config.status: creating hl/c++/examples/run-hlc++-ex.sh config.status: creating hl/fortran/Makefile config.status: creating hl/fortran/src/Makefile config.status: creating hl/fortran/test/Makefile config.status: creating hl/fortran/examples/Makefile config.status: creating hl/fortran/examples/run-hlfortran-ex.sh config.status: creating src/H5config.h config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands config.status: executing .classes commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.10.5 Configured on: Thu Mar 5 08:22:01 EST 2020 Configured by: markadams@MarksMac-221.local Host system: x86_64-apple-darwin19.3.0 Uname information: Darwin MarksMac-221.local 19.3.0 Darwin Kernel Version 19.3.0: Thu Jan 9 20:58:23 PST 2020; root:xnu-6153.81.5~1/RELEASE_X86_64 x86_64 Byte sex: little-endian Installation point: /Users/markadams/Codes/petsc/arch-macosx-gnu-g Compiling Options: ------------------ Build Mode: production Debugging Symbols: no Asserts: no Profiling: no Optimization Level: high Linking Options: ---------------- Libraries: static, shared Statically Linked Executables: LDFLAGS: H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lz -ldl -lm -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz Archiver: /usr/bin/ar AR_FLAGS: cr Ranlib: ranlib Languages: ---------- C: yes C Compiler: /usr/local/Cellar/mpich/3.3.2/bin/mpicc CPPFLAGS: -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/usr/local/Cellar/mpich/3.3.2/include H5_CPPFLAGS: -DNDEBUG -UH5_DEBUG_API AM_CPPFLAGS: C Flags: -fstack-protector -fno-stack-check -Qunused-arguments -g -O0 H5 C Flags: AM C Flags: Shared C Library: yes Static C Library: yes Fortran: no C++: no Java: no Features: --------- Parallel HDF5: yes Parallel Filtered Dataset Writes: yes Large Parallel I/O: yes High-level library: yes Threadsafety: no Default API mapping: v18 With deprecated public symbols: yes I/O filters (external): deflate(zlib) MPE: Direct VFD: no dmalloc: no Packages w/ extra debug output: none API tracing: no Using memory checker: no Memory allocation sanity checks: no Function stack tracing: no Strict file format checks: no Optimization instrumentation: noconfigure: WARNING: unrecognized options: --disable-fc, --disable-f77, --disable-f90 rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory configure: WARNING: unrecognized options: --disable-fc, --disable-f77, --disable-f90 sed: -i may not be used with stdin Making clean in src test -z "libhdf5.la" || rm -f libhdf5.la rm -f ./so_locations rm -rf .libs _libs rm -f H5detect H5make_libsettings rm -f *.o test -z "H5Tinit.c H5lib_settings.c" || rm -f H5Tinit.c H5lib_settings.c test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in test rm -f testhdf5 cache cache_api cache_image cache_tagging lheap ohdr stab gheap evict_on_close farray earray btree2 fheap pool accum hyperslab istore bittests dt_arith page_buffer dtypes dsets chunk_info cmpd_dset filter_fail extend direct_chunk external efc objcopy links unlink twriteorder big mtime fillval mount flush1 flush2 app_ref enum set_extent ttsafe enc_dec_plist enc_dec_plist_cross_platform getname vfd ntypes dangle dtransform reserved cross_read freespace mf vds file_image unregister cache_logging cork swmr error_test err_compat tcheck_version testmeta accum_swmr_reader atomic_writer atomic_reader links_env filenotclosed del_many_dense_attrs flushrefresh use_append_chunk use_append_mchunks use_disable_mdc_flushes swmr_generator swmr_start_write swmr_reader swmr_writer swmr_remove_reader swmr_remove_writer swmr_addrem_writer swmr_sparse_reader swmr_sparse_writer swmr_check_compat_vfd vds_swmr_gen vds_swmr_reader vds_swmr_writer filter_plugin rm -rf .libs _libs test -z "libh5test.la libfilter_plugin1_dsets.la libfilter_plugin2_dsets.la libfilter_plugin3_dsets.la libfilter_plugin4_groups.la" || rm -f libh5test.la libfilter_plugin1_dsets.la libfilter_plugin2_dsets.la libfilter_plugin3_dsets.la libfilter_plugin4_groups.la rm -f ./so_locations rm -f *.o test -z "testhdf5.log cache.log cache_api.log cache_image.log cache_tagging.log lheap.log ohdr.log stab.log gheap.log evict_on_close.log farray.log earray.log btree2.log fheap.log pool.log accum.log hyperslab.log istore.log bittests.log dt_arith.log page_buffer.log dtypes.log dsets.log chunk_info.log cmpd_dset.log filter_fail.log extend.log direct_chunk.log external.log efc.log objcopy.log links.log unlink.log twriteorder.log big.log mtime.log fillval.log mount.log flush1.log flush2.log app_ref.log enum.log set_extent.log ttsafe.log enc_dec_plist.log enc_dec_plist_cross_platform.log getname.log vfd.log ntypes.log dangle.log dtransform.log reserved.log cross_read.log freespace.log mf.log vds.log file_image.log unregister.log cache_logging.log cork.log swmr.log testerror.log testlibinfo.log testcheck_version.log testlinks_env.log testswmr.log testvdsswmr.log testflushrefresh.log test_usecases.log testabort_fail.log test_filter_plugin.log" || rm -f testhdf5.log cache.log cache_api.log cache_image.log cache_tagging.log lheap.log ohdr.log stab.log gheap.log evict_on_close.log farray.log earray.log btree2.log fheap.log pool.log accum.log hyperslab.log istore.log bittests.log dt_arith.log page_buffer.log dtypes.log dsets.log chunk_info.log cmpd_dset.log filter_fail.log extend.log direct_chunk.log external.log efc.log objcopy.log links.log unlink.log twriteorder.log big.log mtime.log fillval.log mount.log flush1.log flush2.log app_ref.log enum.log set_extent.log ttsafe.log enc_dec_plist.log enc_dec_plist_cross_platform.log getname.log vfd.log ntypes.log dangle.log dtransform.log reserved.log cross_read.log freespace.log mf.log vds.log file_image.log unregister.log cache_logging.log cork.log swmr.log testerror.log testlibinfo.log testcheck_version.log testlinks_env.log testswmr.log testvdsswmr.log testflushrefresh.log test_usecases.log testabort_fail.log test_filter_plugin.log test -z "testhdf5.trs cache.trs cache_api.trs cache_image.trs cache_tagging.trs lheap.trs ohdr.trs stab.trs gheap.trs evict_on_close.trs farray.trs earray.trs btree2.trs fheap.trs pool.trs accum.trs hyperslab.trs istore.trs bittests.trs dt_arith.trs page_buffer.trs dtypes.trs dsets.trs chunk_info.trs cmpd_dset.trs filter_fail.trs extend.trs direct_chunk.trs external.trs efc.trs objcopy.trs links.trs unlink.trs twriteorder.trs big.trs mtime.trs fillval.trs mount.trs flush1.trs flush2.trs app_ref.trs enum.trs set_extent.trs ttsafe.trs enc_dec_plist.trs enc_dec_plist_cross_platform.trs getname.trs vfd.trs ntypes.trs dangle.trs dtransform.trs reserved.trs cross_read.trs freespace.trs mf.trs vds.trs file_image.trs unregister.trs cache_logging.trs cork.trs swmr.trs testerror.trs testlibinfo.trs testcheck_version.trs testlinks_env.trs testswmr.trs testvdsswmr.trs testflushrefresh.trs test_usecases.trs testabort_fail.trs test_filter_plugin.trs" || rm -f testhdf5.trs cache.trs cache_api.trs cache_image.trs cache_tagging.trs lheap.trs ohdr.trs stab.trs gheap.trs evict_on_close.trs farray.trs earray.trs btree2.trs fheap.trs pool.trs accum.trs hyperslab.trs istore.trs bittests.trs dt_arith.trs page_buffer.trs dtypes.trs dsets.trs chunk_info.trs cmpd_dset.trs filter_fail.trs extend.trs direct_chunk.trs external.trs efc.trs objcopy.trs links.trs unlink.trs twriteorder.trs big.trs mtime.trs fillval.trs mount.trs flush1.trs flush2.trs app_ref.trs enum.trs set_extent.trs ttsafe.trs enc_dec_plist.trs enc_dec_plist_cross_platform.trs getname.trs vfd.trs ntypes.trs dangle.trs dtransform.trs reserved.trs cross_read.trs freespace.trs mf.trs vds.trs file_image.trs unregister.trs cache_logging.trs cork.trs swmr.trs testerror.trs testlibinfo.trs testcheck_version.trs testlinks_env.trs testswmr.trs testvdsswmr.trs testflushrefresh.trs test_usecases.trs testabort_fail.trs test_filter_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 accum.h5 cmpd_dset.h5 compact_dataset.h5 dataset.h5 dset_offset.h5 max_compact_dataset.h5 simple.h5 set_local.h5 random_chunks.h5 huge_chunks.h5 chunk_cache.h5 big_chunk.h5 chunk_fast.h5 chunk_expand.h5 chunk_fixed.h5 copy_dcpl_newfile.h5 partial_chunks.h5 layout_extend.h5 zero_chunk.h5 chunk_single.h5 swmr_non_latest.h5 earray_hdr_fd.h5 farray_hdr_fd.h5 bt2_hdr_fd.h5 storage_size.h5 dls_01_strings.h5 extend.h5 istore.h5 extlinks*.h5 frspace.h5 links*.h5 sys_file1 tfile[1-7].h5 th5s[1-4].h5 lheap.h5 fheap.h5 ohdr.h5 stab.h5 extern_[1-5].h5 extern_[1-4][rw].raw gheap[0-4].h5 ohdr_min_a.h5 ohdr_min_b.h5 min_dset_ohdr_testfile.h5 dt_arith[1-2] links.h5 links[0-6]*.h5 extlinks[0-15].h5 tmp big.data big[0-9][0-9][0-9][0-9][0-9].h5 stdio.h5 sec2.h5 dtypes[0-9].h5 dtypes1[0].h5 dt_arith[1-2].h5 tattr.h5 tselect.h5 mtime.h5 unlink.h5 unicode.h5 coord.h5 fillval_[0-9].h5 fillval.raw mount_[0-9].h5 testmeta.h5 ttime.h5 trefer[1-3].h5 tvltypes.h5 tvlstr.h5 tvlstr2.h5 twriteorder.dat flush.h5 flush-swmr.h5 noflush.h5 noflush-swmr.h5 flush_extend.h5 flush_extend-swmr.h5 noflush_extend.h5 noflush_extend-swmr.h5 enum1.h5 titerate.h5 ttsafe.h5 tarray1.h5 tgenprop.h5 tmisc[0-9]*.h5 set_extent[1-5].h5 ext[12].bin getname.h5 getname[1-3].h5 sec2_file.h5 direct_file.h5 family_file000[0-3][0-9].h5 new_family_v16_000[0-3][0-9].h5 multi_file-[rs].h5 core_file filter_plugin.h5 new_move_[ab].h5 ntypes.h5 dangle.h5 error_test.h5 err_compat.h5 dtransform.h5 test_filters.h5 get_file_name.h5 tstint[1-2].h5 unlink_chunked.h5 btree2.h5 btree2_tmp.h5 objcopy_src.h5 objcopy_dst.h5 objcopy_ext.dat trefer1.h5 trefer2.h5 app_ref.h5 farray.h5 farray_tmp.h5 earray.h5 earray_tmp.h5 efc[0-5].h5 log_vfd_out.log new_multi_file_v16-r.h5 new_multi_file_v16-s.h5 split_get_file_image_test-m.h5 split_get_file_image_test-r.h5 file_image_core_test.h5.copy unregister_filter_1.h5 unregister_filter_2.h5 vds_virt.h5 vds_dapl.h5 vds_src_[0-1].h5 swmr_data.h5 use_use_append_chunk.h5 use_append_mchunks.h5 use_disable_mdc_flushes.h5 flushrefresh.h5 flushrefresh_VERIFICATION_START flushrefresh_VERIFICATION_CHECKPOINT1 flushrefresh_VERIFICATION_CHECKPOINT2 flushrefresh_VERIFICATION_DONE atomic_data accum_swmr_big.h5 ohdr_swmr.h5 test_swmr*.h5 cache_logging.h5 cache_logging.out vds_swmr.h5 vds_swmr_src_*.h5 swmr[0-2].h5 swmr_writer.out swmr_writer.log.* swmr_reader.out.* swmr_reader.log.* tbogus.h5.copy cache_image_test.h5 direct_chunk.h5 Making clean in testpar rm -f t_mpi t_bigio testphdf5 t_cache t_cache_image t_pread t_pshutdown t_prestart t_init_term t_shapesame t_filters_parallel t_pflush1 t_pflush2 rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 MPItest.h5 Para*.h5 bigio_test.h5 CacheTestDummy.h5 ShapeSameTest.h5 shutdown.h5 after_mpi_fin.h5 go Making clean in tools Making clean in lib rm -rf .libs _libs test -z "libh5tools.la" || rm -f libh5tools.la rm -f ./so_locations rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in src Making clean in h5diff rm -f h5diff ph5diff rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5ls rm -f h5ls rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5dump rm -f h5dump rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in misc rm -f h5debug h5repart h5mkgrp h5clear test -z "h5redeploy" || rm -f h5redeploy rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5import rm -f h5import rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5repack rm -f h5repack rm -rf .libs _libs test -z "libh5repack.la" || rm -f libh5repack.la rm -f ./so_locations rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5jam rm -f h5jam h5unjam rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5copy rm -f h5copy rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 Making clean in h5format_convert rm -f h5format_convert test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5stat rm -f h5stat test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in test Making clean in h5diff rm -f h5diffgentest rm -rf .libs _libs test -z "libdynlibdiff.la" || rm -f libdynlibdiff.la rm -f ./so_locations rm -f *.o test -z "h5diffgentest.log testh5diff.log h5diff_plugin.log" || rm -f h5diffgentest.log testh5diff.log h5diff_plugin.log test -z "h5diffgentest.trs testh5diff.trs h5diff_plugin.trs" || rm -f h5diffgentest.trs testh5diff.trs h5diff_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 expect_sorted actual_sorted Making clean in h5ls rm -rf .libs _libs test -z "libdynlibls.la" || rm -f libdynlibls.la rm -f ./so_locations rm -f *.o test -z "testh5ls.log testh5lsvds.log h5ls_plugin.log" || rm -f testh5ls.log testh5lsvds.log h5ls_plugin.log test -z "testh5ls.trs testh5lsvds.trs h5ls_plugin.trs" || rm -f testh5ls.trs testh5lsvds.trs h5ls_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in h5dump rm -f h5dumpgentest binread rm -rf .libs _libs test -z "libdynlibdump.la" || rm -f libdynlibdump.la rm -f ./so_locations rm -f *.o test -z "h5dumpgentest.log testh5dump.log testh5dumppbits.log testh5dumpvds.log testh5dumpxml.log h5dump_plugin.log" || rm -f h5dumpgentest.log testh5dump.log testh5dumppbits.log testh5dumpvds.log testh5dumpxml.log h5dump_plugin.log test -z "h5dumpgentest.trs testh5dump.trs testh5dumppbits.trs testh5dumpvds.trs testh5dumpxml.trs h5dump_plugin.trs" || rm -f h5dumpgentest.trs testh5dump.trs testh5dumppbits.trs testh5dumpvds.trs testh5dumpxml.trs h5dump_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.bin Making clean in misc Making clean in vds rm -f UC_1_one_dim_gen UC_2_two_dims_gen UC_3_gaps_gen UC_4_printf_gen UC_5_stride_gen rm -rf .libs _libs rm -f *.o test -z "UC_1_one_dim_gen.log UC_2_two_dims_gen.log UC_3_gaps_gen.log UC_4_printf_gen.log UC_5_stride_gen.log" || rm -f UC_1_one_dim_gen.log UC_2_two_dims_gen.log UC_3_gaps_gen.log UC_4_printf_gen.log UC_5_stride_gen.log test -z "UC_1_one_dim_gen.trs UC_2_two_dims_gen.trs UC_3_gaps_gen.trs UC_4_printf_gen.trs UC_5_stride_gen.trs" || rm -f UC_1_one_dim_gen.trs UC_2_two_dims_gen.trs UC_3_gaps_gen.trs UC_4_printf_gen.trs UC_5_stride_gen.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 rm -f h5repart_gentest h5clear_gentest talign repart_test clear_open_chk rm -rf .libs _libs rm -f *.o test -z "h5repart_gentest.log h5clear_gentest.log talign.log testh5repart.log testh5mkgrp.log testh5clear.log" || rm -f h5repart_gentest.log h5clear_gentest.log talign.log testh5repart.log testh5mkgrp.log testh5clear.log test -z "h5repart_gentest.trs h5clear_gentest.trs talign.trs testh5repart.trs testh5mkgrp.trs testh5clear.trs" || rm -f h5repart_gentest.trs h5clear_gentest.trs talign.trs testh5repart.trs testh5mkgrp.trs testh5clear.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 append.log Making clean in h5import rm -f h5importtest rm -rf .libs _libs rm -f *.o test -z "h5importtest.log h5importtestutil.log" || rm -f h5importtest.log h5importtestutil.log test -z "h5importtest.trs h5importtestutil.trs" || rm -f h5importtest.trs h5importtestutil.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.bin Making clean in h5repack rm -rf .libs _libs test -z "libdynlibadd.la libdynlibvers.la" || rm -f libdynlibadd.la libdynlibvers.la rm -f ./so_locations rm -f h5repacktst testh5repack_detect_szip rm -f *.o test -z "h5repack.log h5repack_plugin.log" || rm -f h5repack.log h5repack_plugin.log test -z "h5repack.trs h5repack_plugin.trs" || rm -f h5repack.trs h5repack_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.bin testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5 Making clean in h5jam rm -f tellub h5jamgentest getub rm -rf .libs _libs rm -f *.o test -z "testh5jam.log" || rm -f testh5jam.log test -z "testh5jam.trs" || rm -f testh5jam.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 testfiles/h5jam-*-sav testfiles/h5unjam-*-sav Making clean in h5copy rm -f h5copygentest rm -rf .libs _libs rm -f *.o test -z "h5copygentest.log testh5copy.log" || rm -f h5copygentest.log testh5copy.log test -z "h5copygentest.trs testh5copy.trs" || rm -f h5copygentest.trs testh5copy.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 Making clean in h5format_convert rm -f h5fc_gentest h5fc_chk_idx test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "h5fc_gentest.log testh5fc.log" || rm -f h5fc_gentest.log testh5fc.log test -z "h5fc_gentest.trs testh5fc.trs" || rm -f h5fc_gentest.trs testh5fc.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 Making clean in h5stat rm -f h5stat_gentest test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "h5stat_gentest.log testh5stat.log" || rm -f h5stat_gentest.log testh5stat.log test -z "h5stat_gentest.trs testh5stat.trs" || rm -f h5stat_gentest.trs testh5stat.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 Making clean in perform rm -f h5perf_serial h5perf rm -f iopipe chunk overhead zip_perf perf_meta perf test -z "*.h5 *.raw *.dat x-gnuplot perftest.out" || rm -f *.h5 *.raw *.dat x-gnuplot perftest.out rm -rf .libs _libs rm -f *.o test -z "iopipe.log chunk.log overhead.log zip_perf.log perf_meta.log h5perf_serial.log" || rm -f iopipe.log chunk.log overhead.log zip_perf.log perf_meta.log h5perf_serial.log test -z "iopipe.trs chunk.trs overhead.trs zip_perf.trs perf_meta.trs h5perf_serial.trs" || rm -f iopipe.trs chunk.trs overhead.trs zip_perf.trs perf_meta.trs h5perf_serial.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in . rm -rf .libs _libs rm -f *.lo if test -d ii_files; then \ rm -f -rf ii_files; \ fi Making clean in hl Making clean in src test -z "libhdf5_hl.la" || rm -f libhdf5_hl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 Making clean in test rm -f test_lite test_image test_file_image test_table test_ds test_packet test_ld test_dset_append test_h5do_compat rm -rf .libs _libs rm -f *.o test -z "test_lite.log test_image.log test_file_image.log test_table.log test_ds.log test_packet.log test_ld.log test_dset_append.log test_h5do_compat.log" || rm -f test_lite.log test_image.log test_file_image.log test_table.log test_ds.log test_packet.log test_ld.log test_dset_append.log test_h5do_compat.log test -z "test_lite.trs test_image.trs test_file_image.trs test_table.trs test_ds.trs test_packet.trs test_ld.trs test_dset_append.trs test_h5do_compat.trs" || rm -f test_lite.trs test_image.trs test_file_image.trs test_table.trs test_ds.trs test_packet.trs test_ld.trs test_dset_append.trs test_h5do_compat.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 combine_tables[1-2].h5 test_ds[1-9].h5 test_ds10.h5 test_image[1-3].h5 file_img[1-2].h5 test_lite[1-4].h5 test_table.h5 test_packet_table.h5 test_packet_compress.h5 test_detach.h5 test_packet_table_vlen.h5 testfl_packet_table_vlen.h5 test_append.h5 h5do_compat.h5 Making clean in tools Making clean in gif2h5 rm -f gif2h5 h52gif rm -rf .libs _libs rm -f h52gifgentst rm -f *.o test -z "h52giftest.log" || rm -f h52giftest.log test -z "h52giftest.trs" || rm -f h52giftest.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.gif Making clean in h5watch rm -f h5watch rm -rf .libs _libs rm -f swmr_check_compat_vfd h5watchgentest extend_dset rm -f *.o test -z "testh5watch.log" || rm -f testh5watch.log test -z "testh5watch.trs" || rm -f testh5watch.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2Making all in src /Applications/Xcode.app/Contents/Developer/usr/bin/make all-am CC H5.lo CC H5dbg.lo CC H5checksum.lo CC H5system.lo CC H5timer.lo CC H5trace.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5ACdbg.lo CC H5ACproxy_entry.lo CC H5B.lo CC H5Bcache.lo CC H5Bdbg.lo CC H5B2.lo CC H5B2cache.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2int.lo CC H5B2internal.lo CC H5B2leaf.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5Cdbg.lo CC H5Cepoch.lo CC H5Cimage.lo CC H5Clog.lo CC H5Clog_json.lo CC H5Clog_trace.lo CC H5Cprefetched.lo CC H5Cquery.lo CC H5Ctag.lo CC H5Ctest.lo CC H5CS.lo CC H5CX.lo CC H5D.lo CC H5Dbtree.lo CC H5Dbtree2.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Dearray.lo CC H5Defl.lo CC H5Dfarray.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dnone.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dsingle.lo CC H5Dtest.lo CC H5Dvirtual.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5EA.lo CC H5EAcache.lo CC H5EAdbg.lo CC H5EAdblkpage.lo CC H5EAdblock.lo CC H5EAhdr.lo CC H5EAiblock.lo CC H5EAint.lo CC H5EAsblock.lo CC H5EAstat.lo CC H5EAtest.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fdeprec.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fint.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fspace.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FA.lo CC H5FAcache.lo CC H5FAdbg.lo CC H5FAdblock.lo CC H5FAdblkpage.lo CC H5FAhdr.lo CC H5FAint.lo CC H5FAstat.lo CC H5FAtest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDfamily.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmulti.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDstdio.lo CC H5FDtest.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSint.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HLprfx.lo CC H5HLdblk.lo CC H5HP.lo CC H5I.lo CC H5Itest.lo CC H5L.lo CC H5Lexternal.lo CC H5make_libsettings.o CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5MP.lo CC H5MPtest.lo CC H5O.lo CC H5Odeprec.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ocache_image.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oflush.lo CC H5Ofsinfo.lo CC H5Oginfo.lo CC H5Oint.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Oshmesg.lo CC H5Ostab.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pencdec.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PB.lo CC H5PL.lo CC H5PLint.lo CC H5PLpath.lo CC H5PLplugin_cache.lo CC H5R.lo CC H5Rint.lo CC H5Rdeprec.lo CC H5RS.lo CC H5UC.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Shyper.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5ST.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5detect.o CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5VM.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zscaleoffset.lo CC H5Zszip.lo CC H5Ztrans.lo CC H5ACmpio.lo CC H5Cmpio.lo CC H5Dmpio.lo CC H5Fmpi.lo CC H5FDmpi.lo CC H5FDmpio.lo CC H5Smpio.lo CCLD H5make_libsettings CCLD H5detect LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5make_libsettings > H5lib_settings.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5lib_settings.c ; exit 1) LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5detect > H5Tinit.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5Tinit.c ; exit 1) CC H5lib_settings.lo CC H5Tinit.lo CCLD libhdf5.la Making all in test CC h5test.lo CC cache_common.lo CC testframe.lo CC filter_plugin1_dsets.lo CC swmr_common.lo CC filter_plugin2_dsets.lo CC filter_plugin3_dsets.lo CC filter_plugin4_groups.lo CC testhdf5.o CC tarray.o CC tattr.o CC tchecksum.o CC tconfig.o CC tfile.o CC tgenprop.o CC th5o.o CC th5s.o CC tcoords.o CC theap.o CC tid.o CC titerate.o CC tmeta.o CC tmisc.o CC trefer.o CC trefstr.o CC tselect.o CC tskiplist.o CC tsohm.o CC ttime.o CC ttst.o CC tunicode.o CC tvlstr.o CC tvltypes.o CC cache.o CC cache_api.o CC cache_image.o CC genall5.o CC cache_tagging.o CC lheap.o CC ohdr.o CC stab.o CC gheap.o CC evict_on_close.o CC farray.o CC earray.o CC btree2.o CC fheap.o CC pool.o CC accum.o CC hyperslab.o CC istore.o CC bittests.o CC dt_arith.o CC page_buffer.o CC dtypes.o CC dsets.o CC chunk_info.o CC cmpd_dset.o CC filter_fail.o CC extend.o CC direct_chunk.o CC external.o CC efc.o CC objcopy.o CC links.o CC unlink.o CC twriteorder.o CC big.o CC mtime.o CC fillval.o CC mount.o CC flush1.o CC flush2.o CC app_ref.o CC enum.o CC set_extent.o CC ttsafe.o CC ttsafe_dcreate.o CC ttsafe_error.o CC ttsafe_cancel.o CC ttsafe_acreate.o CC enc_dec_plist.o CC enc_dec_plist_cross_platform.o CC getname.o CC vfd.o CC ntypes.o CC dangle.o CC dtransform.o CC reserved.o CC cross_read.o CC freespace.o CC mf.o CC vds.o CC file_image.o CC unregister.o CC cache_logging.o CC cork.o CC swmr.o CC error_test.o CC err_compat.o CC tcheck_version.o CC testmeta.o CC accum_swmr_reader.o CC atomic_writer.o CC atomic_reader.o CC links_env.o CC filenotclosed.o CC del_many_dense_attrs.o CC flushrefresh.o CC use_append_chunk.o CC use_common.o CC use_append_mchunks.o CC swmr_generator.o CC use_disable_mdc_flushes.o CC swmr_start_write.o CC swmr_reader.o CC swmr_writer.o CC swmr_remove_reader.o CC swmr_remove_writer.o CC swmr_addrem_writer.o CC swmr_sparse_reader.o CC swmr_sparse_writer.o CC swmr_check_compat_vfd.o CC vds_swmr_gen.o CC vds_swmr_reader.o CC vds_swmr_writer.o CC filter_plugin.o CCLD libh5test.la CCLD libfilter_plugin1_dsets.la CCLD libfilter_plugin2_dsets.la CCLD libfilter_plugin3_dsets.la CCLD libfilter_plugin4_groups.la CCLD cache CCLD testhdf5 CCLD cache_api CCLD cache_image CCLD cache_tagging CCLD lheap CCLD ohdr CCLD stab CCLD gheap CCLD evict_on_close CCLD farray CCLD earray CCLD btree2 CCLD pool CCLD fheap CCLD hyperslab CCLD accum CCLD istore CCLD bittests CCLD dt_arith CCLD page_buffer CCLD dtypes CCLD dsets CCLD chunk_info CCLD cmpd_dset CCLD filter_fail CCLD extend CCLD direct_chunk CCLD external CCLD efc CCLD objcopy CCLD links CCLD unlink CCLD twriteorder CCLD big CCLD mtime CCLD fillval CCLD mount CCLD flush1 CCLD flush2 CCLD app_ref CCLD enum CCLD set_extent CCLD ttsafe CCLD enc_dec_plist CCLD enc_dec_plist_cross_platform CCLD getname CCLD vfd CCLD ntypes CCLD dangle CCLD dtransform CCLD reserved CCLD cross_read CCLD freespace CCLD mf CCLD vds CCLD file_image CCLD unregister CCLD cache_logging CCLD cork CCLD swmr CCLD error_test CCLD err_compat CCLD tcheck_version CCLD testmeta CCLD accum_swmr_reader CCLD atomic_writer CCLD atomic_reader CCLD links_env CCLD filenotclosed CCLD del_many_dense_attrs CCLD use_append_chunk CCLD flushrefresh CCLD use_append_mchunks CCLD use_disable_mdc_flushes CCLD swmr_generator CCLD swmr_start_write CCLD swmr_reader CCLD swmr_writer CCLD swmr_remove_reader CCLD swmr_remove_writer CCLD swmr_addrem_writer CCLD swmr_sparse_reader CCLD swmr_sparse_writer CCLD swmr_check_compat_vfd CCLD vds_swmr_gen CCLD vds_swmr_reader CCLD vds_swmr_writer CCLD filter_plugin Making all in testpar CC t_mpi.o CC t_bigio.o CC testphdf5.o CC t_file.o CC t_dset.o CC t_file_image.o CC t_mdset.o CC t_ph5basic.o CC t_coll_chunk.o CC t_span_tree.o CC t_chunk_alloc.o CC t_filter_read.o CC t_prop.o CC t_coll_md_read.o CC t_cache.o CC t_cache_image.o CC t_pread.o CC t_pshutdown.o CC t_prestart.o CC t_init_term.o CC t_shapesame.o CC t_filters_parallel.o CC t_pflush1.o CCLD t_mpi CCLD t_bigio CCLD testphdf5 CCLD t_cache CCLD t_cache_image CCLD t_pshutdown CCLD t_init_term CCLD t_prestart CCLD t_shapesame CCLD t_filters_parallel CC t_pflush2.o CCLD t_pflush1 CCLD t_pflush2 CCLD t_pread Making all in tools Making all in lib CC h5tools.lo CC h5tools_dump.lo CC h5tools_str.lo CC h5diff.lo CC h5tools_utils.lo CC h5diff_array.lo CC h5diff_attr.lo CC h5diff_dset.lo CC h5diff_util.lo CC h5trav.lo CC h5tools_filters.lo CC h5tools_ref.lo CC h5tools_type.lo CC io_timer.lo CCLD libh5tools.la Making all in src Making all in h5diff CC h5diff_main.o CC h5diff_common.o CC ph5diff_main.o CCLD ph5diff CCLD h5diff Making all in h5ls CC h5ls.o CCLD h5ls Making all in h5dump CC h5dump.o CC h5dump_ddl.o CC h5dump_xml.o CCLD h5dump Making all in misc CC h5debug.o CC h5repart.o CC h5mkgrp.o CC h5clear.o CCLD h5repart CCLD h5clear CCLD h5mkgrp CCLD h5debug Making all in h5import CC h5import.o CCLD h5import Making all in h5repack CC h5repack_copy.lo CC h5repack.lo CC h5repack_filters.lo CC h5repack_opttable.lo CC h5repack_parse.lo CC h5repack_refs.lo CC h5repack_verify.lo CC h5repack_main.o CCLD libh5repack.la CCLD h5repack Making all in h5jam CC h5jam.o CC h5unjam.o CCLD h5unjam CCLD h5jam Making all in h5copy CC h5copy.o CCLD h5copy Making all in h5format_convert CC h5format_convert.o CCLD h5format_convert Making all in h5stat CC h5stat.o CCLD h5stat make[3]: Nothing to be done for `all-am'. Making all in test Making all in h5diff CC dynlib_diff.lo CC h5diffgentest.o CCLD h5diffgentest CCLD libdynlibdiff.la Making all in h5ls CC dynlib_ls.lo CCLD libdynlibls.la Making all in h5dump CC dynlib_dump.lo CC h5dumpgentest.o CC binread.o CCLD binread CCLD h5dumpgentest CCLD libdynlibdump.la Making all in misc Making all in vds CC UC_1_one_dim_gen.o CC UC_2_two_dims_gen.o CC UC_3_gaps_gen.o CC UC_5_stride_gen.o CC UC_4_printf_gen.o CCLD UC_1_one_dim_gen CCLD UC_4_printf_gen CCLD UC_5_stride_gen CCLD UC_3_gaps_gen CCLD UC_2_two_dims_gen CC h5repart_gentest.o CC talign.o CC h5clear_gentest.o CC repart_test.o CC clear_open_chk.o CCLD clear_open_chk CCLD h5clear_gentest CCLD h5repart_gentest CCLD talign CCLD repart_test Making all in h5import CC h5importtest.o CCLD h5importtest Making all in h5repack CC dynlib_rpk.lo CC dynlib_vrpk.lo CC h5repacktst.o CC testh5repack_detect_szip.o CCLD testh5repack_detect_szip CCLD h5repacktst CCLD libdynlibadd.la CCLD libdynlibvers.la Making all in h5jam CC tellub.o CC h5jamgentest.o CC getub.o CCLD tellub CCLD getub CCLD h5jamgentest Making all in h5copy CC h5copygentest.o CCLD h5copygentest Making all in h5format_convert CC h5fc_gentest.o CC h5fc_chk_idx.o CCLD h5fc_chk_idx CCLD h5fc_gentest Making all in h5stat CC h5stat_gentest.o CCLD h5stat_gentest Making all in perform CC sio_perf.o CC sio_engine.o CC pio_perf.o CC pio_engine.o CC iopipe.o CC chunk.o CC overhead.o CC zip_perf.o CC perf_meta.o CC perf.o CCLD h5perf_serial CCLD iopipe CCLD chunk CCLD overhead CCLD h5perf CCLD zip_perf CCLD perf_meta CCLD perf make[3]: Nothing to be done for `all-am'. make[2]: Nothing to be done for `all-am'. Making all in . make[1]: Nothing to be done for `all-am'. Making all in hl Making all in src CC H5DO.lo CC H5DS.lo CC H5IM.lo CC H5LT.lo CC H5LTanalyze.lo CC H5LTparse.lo CC H5PT.lo CC H5TB.lo CC H5LD.lo CCLD libhdf5_hl.la Making all in test CC test_lite.o CC test_file_image.o CC test_image.o CC test_table.o CC test_packet.o CC test_ds.o CC test_packet_vlen.o CC test_ld.o CC test_dset_append.o CC test_h5do_compat.o CCLD test_image CCLD test_lite CCLD test_file_image CCLD test_table CCLD test_ds CCLD test_packet CCLD test_h5do_compat CCLD test_ld CCLD test_dset_append Making all in tools Making all in gif2h5 CC gif2hdf.o CC decompress.o CC gif2mem.o CC gifread.o CC writehdf.o CC hdf2gif.o CC hdfgifwr.o CC h52gifgentst.o CCLD h52gif CCLD gif2h5 CCLD h52gifgentst Making all in h5watch CC h5watch.o CC swmr_check_compat_vfd.o CC h5watchgentest.o CC extend_dset-extend_dset.o CCLD swmr_check_compat_vfd CCLD h5watchgentest CCLD extend_dset CCLD h5watch make[3]: Nothing to be done for `all-am'. make[2]: Nothing to be done for `all-am'.H5Aint.c:200:45: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(NULL == (attr->shared->dt = H5T_copy(type, H5T_COPY_ALL))) ^~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ H5Aint.c:638:71: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] (dst_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL), FALSE)) < 0) ^~~~~~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ H5Aint.c:738:62: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if((src_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL), FALSE)) < 0 || ^~~~~~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ 3 warnings generated. H5Adense.c:331:16: warning: initializing 'H5A_t *' (aka 'struct H5A_t *') with an expression of type 'const H5A_t *' (aka 'const struct H5A_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] H5A_t *old_attr = *user_attr; ^ ~~~~~~~~~~ 1 warning generated. H5Dchunk.c:5796:95: warning: passing 'const hsize_t *' (aka 'const unsigned long long *') to parameter of type 'hsize_t *' (aka 'unsigned long long *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(H5D__chunk_file_alloc(udata->idx_info_dst, NULL, &udata_dst.chunk_block, &need_insert, udata_dst.common.scaled) < 0) ^~~~~~~~~~~~~~~~~~~~~~~ ./H5Dpkg.h:650:59: note: passing argument to parameter 'scaled' here H5F_block_t *new_chunk, hbool_t *need_insert, hsize_t scaled[]); ^ H5Dchunk.c:5933:39: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(NULL == (dt_mem = H5T_copy(dt_src, H5T_COPY_TRANSIENT))) ^~~~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ H5Dchunk.c:5941:39: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(NULL == (dt_dst = H5T_copy(dt_src, H5T_COPY_TRANSIENT))) ^~~~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ 3 warnings generated. H5Dfill.c:239:62: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if((src_id = H5I_register(H5I_DATATYPE, H5T_copy(fill_type, H5T_COPY_ALL), FALSE)) < 0) ^~~~~~~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ H5Dfill.c:242:62: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(buf_type, H5T_COPY_ALL), FALSE)) < 0) ^~~~~~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ H5Dfill.c:408:54: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(NULL == (fb_info->mem_type = H5T_copy(dset_type, H5T_COPY_TRANSIENT))) ^~~~~~~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ H5Dint.c:508:43: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if((dset->shared->type = H5T_copy(type, H5T_COPY_ALL)) == NULL) ^~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ 3 warnings generated. 1 warning generated. H5HFcache.c:772:12: warning: assigning to 'H5F_t *' (aka 'struct H5F_t *') from 'const H5F_t *' (aka 'const struct H5F_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] hdr->f = f; ^ ~ H5HFcache.c:1362:12: warning: assigning to 'H5F_t *' (aka 'struct H5F_t *') from 'const H5F_t *' (aka 'const struct H5F_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] hdr->f = f; ^ ~ 2 warnings generated. H5Odeprec.c:141:8: warning: implicit declaration of function 'H5CX_set_apl' is invalid in C99 [-Wimplicit-function-declaration] if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) ^ H5Odeprec.c:195:8: warning: implicit declaration of function 'H5CX_set_apl' is invalid in C99 [-Wimplicit-function-declaration] if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) ^ H5Odeprec.c:322:8: warning: implicit declaration of function 'H5CX_set_apl' is invalid in C99 [-Wimplicit-function-declaration] if(H5CX_set_apl(&lapl_id, H5P_CLS_LACC, loc_id, FALSE) < 0) ^ 3 warnings generated. H5Odtype.c:1190:32: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(NULL == (dst = H5T_copy(src, H5T_COPY_ALL))) ^~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ H5Odtype.c:1544:49: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(NULL == (udata->src_dtype = H5T_copy(dt_src, H5T_COPY_TRANSIENT))) ^~~~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ 2 warnings generated. H5Pdapl.c:208:32: warning: incompatible pointer types passing 'herr_t (const void *, void **, size_t *)' (aka 'int (const void *, void **, unsigned long *)') to parameter of type 'H5P_prp_encode_func_t' (aka 'int (*)(const void *, void **, unsigned long *, void *)') [-Wincompatible-pointer-types] NULL, NULL, NULL, H5D_ACS_DATA_CACHE_NUM_SLOTS_ENC, H5D_ACS_DATA_CACHE_NUM_SLOTS_DEC, NULL, NULL, NULL, NULL) < 0) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ H5Pdapl.c:52:49: note: expanded from macro 'H5D_ACS_DATA_CACHE_NUM_SLOTS_ENC' #define H5D_ACS_DATA_CACHE_NUM_SLOTS_ENC H5P__encode_chunk_cache_nslots ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./H5Ppkg.h:141:27: note: passing argument to parameter 'prp_encode' here H5P_prp_encode_func_t prp_encode, H5P_prp_decode_func_t prp_decode, ^ H5Pdapl.c:213:32: warning: incompatible pointer types passing 'herr_t (const void *, void **, size_t *)' (aka 'int (const void *, void **, unsigned long *)') to parameter of type 'H5P_prp_encode_func_t' (aka 'int (*)(const void *, void **, unsigned long *, void *)') [-Wincompatible-pointer-types] NULL, NULL, NULL, H5D_ACS_DATA_CACHE_BYTE_SIZE_ENC, H5D_ACS_DATA_CACHE_BYTE_SIZE_DEC, NULL, NULL, NULL, NULL) < 0) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ H5Pdapl.c:57:49: note: expanded from macro 'H5D_ACS_DATA_CACHE_BYTE_SIZE_ENC' #define H5D_ACS_DATA_CACHE_BYTE_SIZE_ENC H5P__encode_chunk_cache_nbytes ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./H5Ppkg.h:141:27: note: passing argument to parameter 'prp_encode' here H5P_prp_encode_func_t prp_encode, H5P_prp_decode_func_t prp_decode, ^ H5Pdapl.c:235:67: warning: incompatible pointer types passing 'herr_t (const void *, void **, size_t *)' (aka 'int (const void *, void **, unsigned long *)') to parameter of type 'H5P_prp_encode_func_t' (aka 'int (*)(const void *, void **, unsigned long *, void *)') [-Wincompatible-pointer-types] NULL, H5D_ACS_VDS_PREFIX_SET, H5D_ACS_VDS_PREFIX_GET, H5D_ACS_VDS_PREFIX_ENC, H5D_ACS_VDS_PREFIX_DEC, ^~~~~~~~~~~~~~~~~~~~~~ H5Pdapl.c:79:49: note: expanded from macro 'H5D_ACS_VDS_PREFIX_ENC' #define H5D_ACS_VDS_PREFIX_ENC H5P__dapl_vds_file_pref_enc ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./H5Ppkg.h:141:27: note: passing argument to parameter 'prp_encode' here H5P_prp_encode_func_t prp_encode, H5P_prp_decode_func_t prp_decode, ^ 3 warnings generated. H5Pdcpl.c:3362:54: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(type, H5T_COPY_TRANSIENT), FALSE)) < 0) ^~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ 1 warning generated. H5Pfapl.c:521:31: warning: incompatible pointer types passing 'herr_t (const void *, void **, size_t *)' (aka 'int (const void *, void **, unsigned long *)') to parameter of type 'H5P_prp_encode_func_t' (aka 'int (*)(const void *, void **, unsigned long *, void *)') [-Wincompatible-pointer-types] NULL, NULL, NULL, H5F_ACS_LIBVER_LOW_BOUND_ENC, H5F_ACS_LIBVER_LOW_BOUND_DEC, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ H5Pfapl.c:148:45: note: expanded from macro 'H5F_ACS_LIBVER_LOW_BOUND_ENC' #define H5F_ACS_LIBVER_LOW_BOUND_ENC H5P__facc_libver_type_enc ^~~~~~~~~~~~~~~~~~~~~~~~~ ./H5Ppkg.h:141:27: note: passing argument to parameter 'prp_encode' here H5P_prp_encode_func_t prp_encode, H5P_prp_decode_func_t prp_decode, ^ H5Pfapl.c:527:31: warning: incompatible pointer types passing 'herr_t (const void *, void **, size_t *)' (aka 'int (const void *, void **, unsigned long *)') to parameter of type 'H5P_prp_encode_func_t' (aka 'int (*)(const void *, void **, unsigned long *, void *)') [-Wincompatible-pointer-types] NULL, NULL, NULL, H5F_ACS_LIBVER_HIGH_BOUND_ENC, H5F_ACS_LIBVER_HIGH_BOUND_DEC, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ H5Pfapl.c:154:45: note: expanded from macro 'H5F_ACS_LIBVER_HIGH_BOUND_ENC' #define H5F_ACS_LIBVER_HIGH_BOUND_ENC H5P__facc_libver_type_enc ^~~~~~~~~~~~~~~~~~~~~~~~~ ./H5Ppkg.h:141:27: note: passing argument to parameter 'prp_encode' here H5P_prp_encode_func_t prp_encode, H5P_prp_decode_func_t prp_decode, ^ 2 warnings generated. H5Pocpypl.c:171:83: warning: incompatible pointer types passing 'herr_t (const void *, void **, size_t *)' (aka 'int (const void *, void **, unsigned long *)') to parameter of type 'H5P_prp_encode_func_t' (aka 'int (*)(const void *, void **, unsigned long *, void *)') [-Wincompatible-pointer-types] NULL, H5O_CPY_MERGE_COMM_DT_LIST_SET, H5O_CPY_MERGE_COMM_DT_LIST_GET, H5O_CPY_MERGE_COMM_DT_LIST_ENC, H5O_CPY_MERGE_COMM_DT_LIST_DEC, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ H5Pocpypl.c:59:48: note: expanded from macro 'H5O_CPY_MERGE_COMM_DT_LIST_ENC' #define H5O_CPY_MERGE_COMM_DT_LIST_ENC H5P__ocpy_merge_comm_dt_list_enc ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./H5Ppkg.h:141:27: note: passing argument to parameter 'prp_encode' here H5P_prp_encode_func_t prp_encode, H5P_prp_decode_func_t prp_decode, ^ 1 warning generated. H5T.c:4681:42: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(NULL == (path->src = H5T_copy(src, H5T_COPY_ALL))) ^~~ H5T.c:3213:17: note: passing argument to parameter 'old_dt' here H5T_copy(H5T_t *old_dt, H5T_copy_t method) ^ H5T.c:4683:42: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(NULL == (path->dst = H5T_copy(dst, H5T_COPY_ALL))) ^~~ H5T.c:3213:17: note: passing argument to parameter 'old_dt' here H5T_copy(H5T_t *old_dt, H5T_copy_t method) ^ H5T.c:4739:33: warning: expression which evaluates to zero treated as a null pointer constant of type 'H5E_t *' (aka 'struct H5E_t *') [-Wnon-literal-null-conversion] H5E_clear_stack(H5E_DEFAULT); /*ignore the error*/ ^~~~~~~~~~~ ./H5Epublic.h:27:33: note: expanded from macro 'H5E_DEFAULT' #define H5E_DEFAULT (hid_t)0 ^~~~~~~~ H5T.c:4746:33: warning: expression which evaluates to zero treated as a null pointer constant of type 'H5E_t *' (aka 'struct H5E_t *') [-Wnon-literal-null-conversion] H5E_clear_stack(H5E_DEFAULT); /*ignore the error*/ ^~~~~~~~~~~ ./H5Epublic.h:27:33: note: expanded from macro 'H5E_DEFAULT' #define H5E_DEFAULT (hid_t)0 ^~~~~~~~ 4 warnings generated. H5Tcompound.c:464:56: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] parent->shared->u.compnd.memb[idx].type = H5T_copy(member, H5T_COPY_ALL); ^~~~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ 1 warning generated. H5Tenum.c:111:42: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] ret_value->shared->parent = H5T_copy(parent, H5T_COPY_ALL); ^~~~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ H5Tenum.c:412:38: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(NULL == (copied_dt = H5T_copy(dt, H5T_COPY_ALL))) ^~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ H5Tenum.c:551:35: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if (NULL==(copied_dt=H5T_copy(dt, H5T_COPY_ALL))) ^~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ 3 warnings generated. H5Tvlen.c:135:47: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(NULL == (dt->shared->parent = H5T_copy(base, H5T_COPY_ALL))) ^~~~ ./H5Tprivate.h:108:31: note: passing argument to parameter 'old_dt' here H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method); ^ 1 warning generated. /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libhdf5.a(H5CS.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libhdf5.a(H5Obogus.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libhdf5.a(H5TS.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libhdf5.a(H5Zszip.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libhdf5.a(H5CS.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libhdf5.a(H5Obogus.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libhdf5.a(H5TS.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libhdf5.a(H5Zszip.o) has no symbols dt_arith.c:630:74: warning: incompatible pointer types passing 'herr_t (hid_t, hid_t, H5T_cdata_t *, size_t, size_t, size_t, void *, void *)' (aka 'int (long long, long long, struct H5T_cdata_t *, unsigned long, unsigned long, unsigned long, void *, void *)') to parameter of type 'H5T_conv_t' (aka 'int (*)(long long, long long, struct H5T_cdata_t *, unsigned long, unsigned long, unsigned long, void *, void *, long long)') [-Wincompatible-pointer-types] H5Tunregister(H5T_PERS_HARD, NULL, H5T_NATIVE_INT, H5T_NATIVE_FLOAT, H5T__conv_int_float); ^~~~~~~~~~~~~~~~~~~ ../src/H5Tpublic.h:589:34: note: passing argument to parameter 'func' here hid_t dst_id, H5T_conv_t func); ^ dt_arith.c:639:77: warning: incompatible pointer types passing 'herr_t (hid_t, hid_t, H5T_cdata_t *, size_t, size_t, size_t, void *, void *)' (aka 'int (long long, long long, struct H5T_cdata_t *, unsigned long, unsigned long, unsigned long, void *, void *)') to parameter of type 'H5T_conv_t' (aka 'int (*)(long long, long long, struct H5T_cdata_t *, unsigned long, unsigned long, unsigned long, void *, void *, long long)') [-Wincompatible-pointer-types] H5Tregister(H5T_PERS_HARD, "int_flt", H5T_NATIVE_INT, H5T_NATIVE_FLOAT, H5T__conv_int_float); ^~~~~~~~~~~~~~~~~~~ ../src/H5Tpublic.h:587:32: note: passing argument to parameter 'func' here hid_t dst_id, H5T_conv_t func); ^ dtypes.c:1858:26: warning: passing 'const char *' to parameter of type 'void *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(rdata.str) HDfree(rdata.str); ^~~~~~~~~ ../src/H5private.h:859:31: note: expanded from macro 'HDfree' #define HDfree(M) free(M) ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/malloc/_malloc.h:42:18: note: passing argument to parameter here void free(void *); ^ dtypes.c:1879:26: warning: passing 'const char *' to parameter of type 'void *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(rdata.str) HDfree(rdata.str); ^~~~~~~~~ ../src/H5private.h:859:31: note: expanded from macro 'HDfree' #define HDfree(M) free(M) ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/malloc/_malloc.h:42:18: note: passing argument to parameter here void free(void *); ^ dtypes.c:2846:27: warning: passing 'const char *' to parameter of type 'void *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] if(rdata1.str) HDfree(rdata1.str); ^~~~~~~~~~ ../src/H5private.h:859:31: note: expanded from macro 'HDfree' #define HDfree(M) free(M) ^ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/malloc/_malloc.h:42:18: note: passing argument to parameter here void free(void *); ^ 2 warnings generated. cmpd_dset.c:2222:63: warning: incompatible pointer types passing 'herr_t (hid_t, hid_t, H5T_cdata_t *, size_t, size_t, size_t, void *, void *)' (aka 'int (long long, long long, struct H5T_cdata_t *, unsigned long, unsigned long, unsigned long, void *, void *)') to parameter of type 'H5T_conv_t' (aka 'int (*)(long long, long long, struct H5T_cdata_t *, unsigned long, unsigned long, unsigned long, void *, void *, long long)') [-Wincompatible-pointer-types] H5Tunregister(H5T_PERS_DONTCARE, NULL, (hid_t)-1, (hid_t)-1, H5T__conv_struct_opt); ^~~~~~~~~~~~~~~~~~~~ ../src/H5Tpublic.h:589:34: note: passing argument to parameter 'func' here hid_t dst_id, H5T_conv_t func); ^ 1 warning generated. 3 warnings generated. t_span_tree.c:2634:11: warning: expression result unused [-Wunused-value] (hbool_t)(use_collective_io++) ) { ^ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. t_cache.c:7253:9: warning: implicit declaration of function 'H5CX_set_coll_metadata_read' is invalid in C99 [-Wimplicit-function-declaration] H5CX_set_coll_metadata_read(TRUE); ^ 1 warning generated. h5repack_filters.c:100:15: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] pname = name; ^ ~~~~ h5repack.c:750:70: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] printf("Opening file. Searching %d objects to modify ...\n", travt->nobjs); ~~ ^~~~~~~~~~~~ %zu 1 warning generated. 1 warning generated. h5clear_gentest.c:258:26: warning: implicit conversion from 'long' to 'int32_t' (aka 'int') changes value from 4168810027 to -126157269 [-Wconstant-conversion] chksum = 4168810027; ~ ^~~~~~~~~~ h5clear_gentest.c:263:26: warning: implicit conversion from 'long' to 'int32_t' (aka 'int') changes value from 3716054346 to -578912950 [-Wconstant-conversion] chksum = 3716054346; ~ ^~~~~~~~~~ 2 warnings generated. In file included from testh5repack_detect_szip.c:17: In file included from ../../../test/h5test.h:29: ../../../src/H5Eprivate.h:33:9: warning: 'HERROR' macro redefined [-Wmacro-redefined] #define HERROR(maj_id, min_id, ...) H5E_printf_stack(NULL, __FILE__, FUNC, __LINE__, H5E_ERR_CLS_g, maj_id, min_id, __VA_ARGS__) ^ ../../../tools/lib/h5tools_error.h:76:9: note: previous definition is here #define HERROR(maj_id, min_id, ...) { \ ^ In file included from testh5repack_detect_szip.c:17: In file included from ../../../test/h5test.h:29: ../../../src/H5Eprivate.h:65:9: warning: 'HGOTO_ERROR' macro redefined [-Wmacro-redefined] #define HGOTO_ERROR(maj, min, ret_val, ...) { \ ^ ../../../tools/lib/h5tools_error.h:117:9: note: previous definition is here #define HGOTO_ERROR(fail_value, min_id, ...) { \ ^ In file included from testh5repack_detect_szip.c:17: In file included from ../../../test/h5test.h:29: ../../../src/H5Eprivate.h:169:9: warning: 'H5E_THROW' macro redefined [-Wmacro-redefined] #define H5E_THROW(...) { \ ^ ../../../tools/lib/h5tools_error.h:106:9: note: previous definition is here #define H5E_THROW(fail_value, min_id, ...) { \ ^ In file included from h5repacktst.c:17: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:76:9: warning: 'HERROR' macro redefined [-Wmacro-redefined] #define HERROR(maj_id, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:33:9: note: previous definition is here #define HERROR(maj_id, min_id, ...) H5E_printf_stack(NULL, __FILE__, FUNC, __LINE__, H5E_ERR_CLS_g, maj_id, min_id, __VA_ARGS__) ^ In file included from h5repacktst.c:17: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:106:9: warning: 'H5E_THROW' macro redefined [-Wmacro-redefined] #define H5E_THROW(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:169:9: note: previous definition is here #define H5E_THROW(...) { \ ^ In file included from h5repacktst.c:17: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:117:9: warning: 'HGOTO_ERROR' macro redefined [-Wmacro-redefined] #define HGOTO_ERROR(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:65:9: note: previous definition is here #define HGOTO_ERROR(maj, min, ret_val, ...) { \ ^ 3 warnings generated. 3 warnings generated. In file included from sio_perf.c:56: In file included from ./sio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:76:9: warning: 'HERROR' macro redefined [-Wmacro-redefined] #define HERROR(maj_id, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:33:9: note: previous definition is here #define HERROR(maj_id, min_id, ...) H5E_printf_stack(NULL, __FILE__, FUNC, __LINE__, H5E_ERR_CLS_g, maj_id, min_id, __VA_ARGS__) ^ In file included from sio_perf.c:56: In file included from ./sio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:106:9: warning: 'H5E_THROW' macro redefined [-Wmacro-redefined] #define H5E_THROW(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:169:9: note: previous definition is here #define H5E_THROW(...) { \ ^ In file included from sio_perf.c:56: In file included from ./sio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:117:9: warning: 'HGOTO_ERROR' macro redefined [-Wmacro-redefined] #define HGOTO_ERROR(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:65:9: note: previous definition is here #define HGOTO_ERROR(maj, min, ret_val, ...) { \ ^ In file included from sio_engine.c:35: In file included from ./sio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:76:9: warning: 'HERROR' macro redefined [-Wmacro-redefined] #define HERROR(maj_id, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:33:9: note: previous definition is here #define HERROR(maj_id, min_id, ...) H5E_printf_stack(NULL, __FILE__, FUNC, __LINE__, H5E_ERR_CLS_g, maj_id, min_id, __VA_ARGS__) ^ In file included from sio_engine.c:35: In file included from ./sio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:106:9: warning: 'H5E_THROW' macro redefined [-Wmacro-redefined] #define H5E_THROW(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:169:9: note: previous definition is here #define H5E_THROW(...) { \ ^ In file included from sio_engine.c:35: In file included from ./sio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:117:9: warning: 'HGOTO_ERROR' macro redefined [-Wmacro-redefined] #define HGOTO_ERROR(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:65:9: note: previous definition is here #define HGOTO_ERROR(maj, min, ret_val, ...) { \ ^ In file included from pio_engine.c:43: In file included from ./pio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:76:9: warning: 'HERROR' macro redefined [-Wmacro-redefined] #define HERROR(maj_id, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:33:9: note: previous definition is here #define HERROR(maj_id, min_id, ...) H5E_printf_stack(NULL, __FILE__, FUNC, __LINE__, H5E_ERR_CLS_g, maj_id, min_id, __VA_ARGS__) ^ In file included from pio_engine.c:43: In file included from ./pio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:106:9: warning: 'H5E_THROW' macro redefined [-Wmacro-redefined] #define H5E_THROW(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:169:9: note: previous definition is here #define H5E_THROW(...) { \ ^ In file included from pio_engine.c:43: In file included from ./pio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:117:9: warning: 'HGOTO_ERROR' macro redefined [-Wmacro-redefined] #define HGOTO_ERROR(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:65:9: note: previous definition is here #define HGOTO_ERROR(maj, min, ret_val, ...) { \ ^ pio_engine.c:315:9: warning: equality comparison result unused [-Wunused-comparison] hrc == SUCCESS; ~~~~^~~~~~~~~~ pio_engine.c:315:9: note: use '=' to turn this equality comparison into an assignment hrc == SUCCESS; ^~ = In file included from pio_perf.c:70: In file included from ./pio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:76:9: warning: 'HERROR' macro redefined [-Wmacro-redefined] #define HERROR(maj_id, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:33:9: note: previous definition is here #define HERROR(maj_id, min_id, ...) H5E_printf_stack(NULL, __FILE__, FUNC, __LINE__, H5E_ERR_CLS_g, maj_id, min_id, __VA_ARGS__) ^ In file included from pio_perf.c:70: In file included from ./pio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:106:9: warning: 'H5E_THROW' macro redefined [-Wmacro-redefined] #define H5E_THROW(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:169:9: note: previous definition is here #define H5E_THROW(...) { \ ^ In file included from pio_perf.c:70: In file included from ./pio_perf.h:19: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:117:9: warning: 'HGOTO_ERROR' macro redefined [-Wmacro-redefined] #define HGOTO_ERROR(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:65:9: note: previous definition is here #define HGOTO_ERROR(maj, min, ret_val, ...) { \ ^ 3 warnings generated. 3 warnings generated. 3 warnings generated. 4 warnings generated. In file included from zip_perf.c:24: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:76:9: warning: 'HERROR' macro redefined [-Wmacro-redefined] #define HERROR(maj_id, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:33:9: note: previous definition is here #define HERROR(maj_id, min_id, ...) H5E_printf_stack(NULL, __FILE__, FUNC, __LINE__, H5E_ERR_CLS_g, maj_id, min_id, __VA_ARGS__) ^ In file included from zip_perf.c:24: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:106:9: warning: 'H5E_THROW' macro redefined [-Wmacro-redefined] #define H5E_THROW(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:169:9: note: previous definition is here #define H5E_THROW(...) { \ ^ In file included from zip_perf.c:24: In file included from ../../../tools/lib/h5tools.h:24: ../../../tools/lib/h5tools_error.h:117:9: warning: 'HGOTO_ERROR' macro redefined [-Wmacro-redefined] #define HGOTO_ERROR(fail_value, min_id, ...) { \ ^ ../../../src/H5Eprivate.h:65:9: note: previous definition is here #define HGOTO_ERROR(maj, min, ret_val, ...) { \ ^ 3 warnings generated. perf.c:217:5: warning: implicit declaration of function 'h5_fixname_no_suffix' is invalid in C99 [-Wimplicit-function-declaration] h5_fixname_no_suffix(FILENAME[0], acc_tpl, filename, sizeof filename); ^ perf.c:246:65: warning: passing 'hssize_t [1]' to parameter of type 'const hsize_t *' (aka 'const unsigned long long *') converts between pointers to integer types with different sign [-Wpointer-sign] ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block); ^~~~~ ../../../src/H5Spublic.h:110:22: note: passing argument to parameter 'start' here const hsize_t start[], ^ perf.c:299:65: warning: passing 'hssize_t [1]' to parameter of type 'const hsize_t *' (aka 'const unsigned long long *') converts between pointers to integer types with different sign [-Wpointer-sign] ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block); ^~~~~ ../../../src/H5Spublic.h:110:22: note: passing argument to parameter 'start' here const hsize_t start[], ^ perf.c:323:66: warning: length modifier 'L' results in undefined behavior or no effect with 'd' conversion specifier [-Wformat] if (ret < 0) fprintf(stderr, "node %d, read error, loc = %Ld: %s\n", ~^~ perf.c:323:66: note: did you mean to use 'll'? if (ret < 0) fprintf(stderr, "node %d, read error, loc = %Ld: %s\n", ^ ll perf.c:440:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (p=(char*)strchr(optarg, '/')) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ perf.c:440:22: note: place parentheses around the assignment to silence this warning if (p=(char*)strchr(optarg, '/')) ^ ( ) perf.c:440:22: note: use '==' to turn this assignment into an equality comparison if (p=(char*)strchr(optarg, '/')) ^ == 5 warnings generated. H5LTparse.c:4:32: warning: unknown warning group '-Wlarger-than=', ignored [-Wunknown-warning-option] #pragma GCC diagnostic ignored "-Wlarger-than=" ^ H5LTparse.c:13:32: warning: unknown warning group '-Wsuggest-attribute=pure', ignored [-Wunknown-warning-option] #pragma GCC diagnostic ignored "-Wsuggest-attribute=pure" ^ H5LTanalyze.c:4:32: warning: unknown warning group '-Wlarger-than=', ignored [-Wunknown-warning-option] #pragma GCC diagnostic ignored "-Wlarger-than=" ^ H5LTanalyze.c:13:32: warning: unknown warning group '-Wsuggest-attribute=pure', ignored [-Wunknown-warning-option] #pragma GCC diagnostic ignored "-Wsuggest-attribute=pure" ^ hl/src/H5LTanalyze.l:30:32: warning: unknown warning group '-Wsuggest-attribute=const', ignored [-Wunknown-warning-option] #pragma GCC diagnostic ignored "-Wsuggest-attribute=const" ^ 2 warnings generated. 3 warnings generated. gif2mem.c:298:29: warning: logical not is only applied to the left hand side of this comparison [-Wlogical-not-parentheses] if (!*MemGif++ == 0) ^ ~~ gif2mem.c:298:29: note: add parentheses after the '!' to evaluate the comparison first if (!*MemGif++ == 0) ^ ( ) gif2mem.c:298:29: note: add parentheses around left hand side expression to silence this warning if (!*MemGif++ == 0) ^ ( ) 1 warning generated. Making install in src ../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libhdf5.la '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' libtool: install: /usr/bin/install -c .libs/libhdf5.103.dylib /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.103.dylib libtool: install: (cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib && { ln -s -f libhdf5.103.dylib libhdf5.dylib || { rm -f libhdf5.dylib && ln -s libhdf5.103.dylib libhdf5.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5.lai /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.la libtool: install: /usr/bin/install -c .libs/libhdf5.a /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.a libtool: install: chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.a libtool: install: ranlib /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.a ../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include' /usr/bin/install -c -m 644 hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5version.h H5Apublic.h H5ACpublic.h H5Cpublic.h H5Dpublic.h H5Epubgen.h H5Epublic.h H5Fpublic.h H5FDpublic.h H5FDcore.h H5FDdirect.h H5FDfamily.h H5FDlog.h H5FDmpi.h H5FDmpio.h H5FDmulti.h H5FDsec2.h H5FDstdio.h H5FDwindows.h H5Gpublic.h H5Ipublic.h H5Lpublic.h H5MMpublic.h H5Opublic.h H5Ppublic.h H5PLextern.h H5PLpublic.h H5Rpublic.h H5Spublic.h H5Tpublic.h H5Zpublic.h '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include' ../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' /usr/bin/install -c -m 644 libhdf5.settings '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' Making install in test make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. Making install in testpar make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. Making install in tools Making install in lib make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. Making install in src Making install in h5diff ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5diff ph5diff '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5diff /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5diff libtool: install: /usr/bin/install -c .libs/ph5diff /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/ph5diff make[4]: Nothing to be done for `install-data-am'. Making install in h5ls ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5ls '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5ls /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5ls make[4]: Nothing to be done for `install-data-am'. Making install in h5dump ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5dump '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5dump /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5dump make[4]: Nothing to be done for `install-data-am'. Making install in misc ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5debug h5repart h5mkgrp h5clear '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5debug /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5debug libtool: install: /usr/bin/install -c .libs/h5repart /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5repart libtool: install: /usr/bin/install -c .libs/h5mkgrp /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5mkgrp libtool: install: /usr/bin/install -c .libs/h5clear /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5clear ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /usr/bin/install -c h5redeploy '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' make[4]: Nothing to be done for `install-data-am'. Making install in h5import ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5import '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5import /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5import make[4]: Nothing to be done for `install-data-am'. Making install in h5repack ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5repack '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5repack /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5repack make[4]: Nothing to be done for `install-data-am'. Making install in h5jam ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5jam h5unjam '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5jam /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5jam libtool: install: /usr/bin/install -c .libs/h5unjam /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5unjam make[4]: Nothing to be done for `install-data-am'. Making install in h5copy ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5copy '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5copy /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5copy make[4]: Nothing to be done for `install-data-am'. Making install in h5format_convert ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5format_convert '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5format_convert /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5format_convert make[4]: Nothing to be done for `install-data-am'. Making install in h5stat ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5stat '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5stat /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5stat make[4]: Nothing to be done for `install-data-am'. make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in test Making install in h5diff make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5ls make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5dump make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in misc Making install in vds make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. Making install in h5import make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5repack make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5jam make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5copy make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5format_convert make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in h5stat make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in perform ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5perf_serial h5perf '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5perf_serial /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5perf_serial libtool: install: /usr/bin/install -c .libs/h5perf /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5perf make[4]: Nothing to be done for `install-data-am'. make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. Making install in . make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. Making install in hl Making install in src ../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libhdf5_hl.la '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' libtool: install: /usr/bin/install -c .libs/libhdf5_hl.100.dylib /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.100.dylib libtool: install: (cd /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib && { ln -s -f libhdf5_hl.100.dylib libhdf5_hl.dylib || { rm -f libhdf5_hl.dylib && ln -s libhdf5_hl.100.dylib libhdf5_hl.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5_hl.lai /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.la libtool: install: /usr/bin/install -c .libs/libhdf5_hl.a /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.a libtool: install: chmod 644 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.a libtool: install: ranlib /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.a ../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include' /usr/bin/install -c -m 644 hdf5_hl.h H5DOpublic.h H5IMpublic.h H5LTpublic.h H5TBpublic.h H5DSpublic.h H5PTpublic.h H5LDpublic.h '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include' Making install in test make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. Making install in tools Making install in gif2h5 ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c gif2h5 h52gif '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/gif2h5 /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/gif2h5 libtool: install: /usr/bin/install -c .libs/h52gif /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h52gif make[4]: Nothing to be done for `install-data-am'. Making install in h5watch ../../../bin/install-sh -c -d '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c h5watch '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin' libtool: install: /usr/bin/install -c .libs/h5watch /Users/markadams/Codes/petsc/arch-macosx-gnu-g/bin/h5watch make[4]: Nothing to be done for `install-data-am'. make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. for d in examples hl; do \ (cd $d && /Applications/Xcode.app/Contents/Developer/usr/bin/make install-examples) || exit 1; \ done ../bin/mkdirs /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c for d in examples ; do \ (cd $d && /Applications/Xcode.app/Contents/Developer/usr/bin/make install-examples) || exit 1; \ done ../../bin/mkdirs /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.a(H5CS.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.a(H5Obogus.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.a(H5TS.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5.a(H5Zszip.o) has no symbols + /usr/bin/install -c ./h5_write.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_read.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_extend_write.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_chunk_read.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_crtgrpd.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_subset.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_cmprss.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_rdwt.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_crtgrpar.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_extend.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_crtatt.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_crtgrp.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_crtdat.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_compound.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_group.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_select.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_attribute.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_mount.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_reference.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_drivers.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_extlink.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_elink_unix2win.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_ref2reg.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_shared_mesg.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./ph5example.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-exc.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-exclim.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-eiger.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-simpleIO.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-percival.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-percival-unlim.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-percival-unlim-maxmin.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c run-c-ex.sh /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/c/. + /usr/bin/install -c ./README /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/. + /usr/bin/install -c ./run-all-ex.sh /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/. + /usr/bin/install -c ./ex_lite1.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_lite2.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_lite3.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ptExampleFL.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_image1.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_image2.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_01.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_02.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_03.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_04.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_05.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_06.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_07.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_08.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_09.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_10.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_11.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_12.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_ds1.c /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./image24pixel.txt /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./image8.txt /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./pal_rgb.h /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c run-hlc-ex.sh /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./run-hl-ex.sh /Users/markadams/Codes/petsc/arch-macosx-gnu-g/share/hdf5_examples/hl/. ********End of Output of running make on HDF5 ******* Checking for library in Download HDF5: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.a', 'libhdf5.a'] Contents: ['bin', 'include', 'lib', 'externalpackages', 'share'] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [H5T_init] in library ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libhdf5_hl.a', 'libhdf5.a'] ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib/libz.a'] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char H5T_init(); static void _check_H5T_init() { H5T_init(); } int main() { _check_H5T_init();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lhdf5_hl -lhdf5 -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz -lc++ -ldl Defined "HAVE_LIBHDF5_HL" to "1" Defined "HAVE_LIBHDF5" to "1" Checking for optional headers [] in Download HDF5: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Found header files [] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking for headers ['hdf5.h'] in Download HDF5: ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['hdf5.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Checking include with compiler flags var CPPFLAGS ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include', '/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include', '/usr/local/Cellar/mpich/3.3.2/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/usr/local/Cellar/mpich/3.3.2/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['hdf5.h'] in ['/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_ZLIB_H) foundbeast #endif Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5 -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5/conftest.c Defined "HDF5_HAVE_ZLIB" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_SZLIB_H) foundbeast #endif Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5 -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_PARALLEL) foundbeast #endif Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5 -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5/conftest.c Defined "HDF5_HAVE_PARALLEL" to "1" ================================================================================ TEST checkVersion from config.packages.hdf5(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:985) TESTING: checkVersion from config.packages.hdf5(config/BuildSystem/config/package.py:985) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "hdf5.h" ;petscpkgver(H5_VERSION); Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5 -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5/conftest.c For hdf5 need 1.8 <= 1.10.5 <= ================================================================================ TEST checkSharedLibrary from config.packages.hdf5(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:919) TESTING: checkSharedLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:919) By default we don't care about checking if the library is shared child config.packages.hdf5 192.437806 ================================================================================ TEST alternateConfigureLibrary from config.packages.med(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.med 0.001152 ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.000583 ================================================================================ TEST alternateConfigureLibrary from config.packages.ascem-io(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.000640 ================================================================================ TEST alternateConfigureLibrary from config.packages.pflotran(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.000700 ================================================================================ TEST alternateConfigureLibrary from config.packages.alquimia(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.000636 ================================================================================ TEST alternateConfigureLibrary from config.packages.SAMRAI(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.000652 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADIOS2(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.ADIOS2(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS2 0.000640 child config.packages.flibs 0.000016 ================================================================================ TEST alternateConfigureLibrary from config.packages.pnetcdf(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.000596 ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.000596 ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.000604 ================================================================================ TEST alternateConfigureLibrary from config.packages.hwloc(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.000702 ================================================================================ TEST checkDependencies from config.packages.pthread(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.pthread(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/pthread.py:20) TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/Users/markadams/Codes/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: [] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: [] ================================================================================ TEST checkInclude from config.headers(/Users/markadams/Codes/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['pthread.h'] in [] All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'pthread_barrier_t' pthread_barrier_t *a; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread/conftest.c:6:20: error: use of undeclared identifier 'a' pthread_barrier_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t *a; ^ /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread/conftest.c:6:12: error: use of undeclared identifier 'a' cpu_set_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -E -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.parmetis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.hdf5 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkVersion from config.packages.pthread(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:985) TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:985) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:919) TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:919) By default we don't care about checking if the library is shared child config.packages.pthread 0.988968 ================================================================================ TEST alternateConfigureLibrary from config.packages.PTScotch(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.001038 ================================================================================ TEST alternateConfigureLibrary from config.packages.Zoltan(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.000660 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADIOS(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.000709 ================================================================================ TEST alternateConfigureLibrary from config.packages.openmp(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.000618 ================================================================================ TEST alternateConfigureLibrary from config.packages.viennacl(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.000684 ================================================================================ TEST alternateConfigureLibrary from config.packages.ColPack(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.000617 ================================================================================ TEST alternateConfigureLibrary from config.packages.openblas(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.000607 ================================================================================ TEST alternateConfigureLibrary from config.packages.fblaslapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.fblaslapack 0.000588 ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.000571 ================================================================================ TEST checkDependencies from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/BlasLapack.py:439) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:439) ================================================================================ Checking for BLAS and LAPACK in Default compiler libraries ================================================================================ TEST checkLib from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/BlasLapack.py:106) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:106) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot", referenced from: __check_ddot in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library [''] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot_", referenced from: __check_ddot_ in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default BLIS ================================================================================ TEST checkLib from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/BlasLapack.py:106) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:106) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library ['libblis.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lblis -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['libblis.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lblis -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default compiler locations ================================================================================ TEST checkLib from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/BlasLapack.py:106) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:106) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library ['libblas.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -lblas -lc++ -ldl Defined "HAVE_LIBBLAS" to "1" Checking for functions [dgetrs] in library ['liblapack.a'] ['libblas.a'] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs(); static void _check_dgetrs() { dgetrs(); } int main() { _check_dgetrs();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" Checking for functions [dgeev] in library ['liblapack.a'] ['libblas.a'] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev(); static void _check_dgeev() { dgeev(); } int main() { _check_dgeev();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" Found Fortran mangling on BLAS/LAPACK which is unchanged ================================================================================ TEST checkMKL from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/BlasLapack.py:510) TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:510) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['liblapack.a', 'libblas.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_mkl_set_num_threads", referenced from: __check_mkl_set_num_threads in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkESSL from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/BlasLapack.py:548) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:548) Check for the IBM ESSL library Checking for functions [iessl] in library ['liblapack.a', 'libblas.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_iessl", referenced from: __check_iessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/BlasLapack.py:556) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:556) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['liblapack.a', 'libblas.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ipessl", referenced from: __check_ipessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ================================================================================ TEST checkMissing from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/BlasLapack.py:581) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:581) Check for missing LAPACK routines Checking for functions [dgelss dgerfs dgges dhgeqz dhseqr dorgqr dormqr dstebz dstegr dstein dsteqr dsytri dtgsen dtrsen dtrtrs] in library ['liblapack.a'] ['libblas.a', 'liblapack.a', 'libblas.a'] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss(); static void _check_dgelss() { dgelss(); } char dgerfs(); static void _check_dgerfs() { dgerfs(); } char dgges(); static void _check_dgges() { dgges(); } char dhgeqz(); static void _check_dhgeqz() { dhgeqz(); } char dhseqr(); static void _check_dhseqr() { dhseqr(); } char dorgqr(); static void _check_dorgqr() { dorgqr(); } char dormqr(); static void _check_dormqr() { dormqr(); } char dstebz(); static void _check_dstebz() { dstebz(); } char dstegr(); static void _check_dstegr() { dstegr(); } char dstein(); static void _check_dstein() { dstein(); } char dsteqr(); static void _check_dsteqr() { dsteqr(); } char dsytri(); static void _check_dsytri() { dsytri(); } char dtgsen(); static void _check_dtgsen() { dtgsen(); } char dtrsen(); static void _check_dtrsen() { dtrsen(); } char dtrtrs(); static void _check_dtrtrs() { dtrtrs(); } int main() { _check_dgelss(); _check_dgerfs(); _check_dgges(); _check_dhgeqz(); _check_dhseqr(); _check_dorgqr(); _check_dormqr(); _check_dstebz(); _check_dstegr(); _check_dstein(); _check_dsteqr(); _check_dsytri(); _check_dtgsen(); _check_dtrsen(); _check_dtrtrs();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -llapack -lblas -llapack -lblas -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" ================================================================================ TEST checklsame from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/BlasLapack.py:597) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:597) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Defined "MISSING_LAPACK_lsame" to "1" Checking for functions [lsame] in library ['liblapack.a', 'libblas.a'] [] Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame(); static void _check_lsame() { lsame(); } int main() { _check_lsame();; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries/conftest.o -llapack -lblas -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_lsame", referenced from: __check_lsame in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev(void); char* testroutine(void){return dgeev(); }Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev(void); char* testroutine(void){return dgeev(); }Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers/conftest.o -llapack -lblas -llapack -lblas -lc++ -ldl ================================================================================ TEST checkRuntimeIssues from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/BlasLapack.py:656) TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:656) Determines if BLAS/LAPACK routines use 32 or 64 bit integers All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.BlasLapack Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.BlasLapack/conftest.o -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.compilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.closure -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.headers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.cacheDetails -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.types -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.functions -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.getResidentSetSize -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.featureTestMacros -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.utilities.missing -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/PETSc.options.scalarTypes -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.MPI -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.valgrind -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.metis -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.BlasLapack -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.libraries -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.setCompilers -I/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Running Executable WITHOUT threads to time it out Executing: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -o /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.BlasLapack/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.BlasLapack/conftest.o -llapack -lblas -lc++ -ldl Testing executable /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.BlasLapack/conftest to see if it can be run Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.BlasLapack/conftest Checking for 64 bit blas indices: result 0 ================================================================================ TEST checkVersion from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:985) TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:985) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.BlasLapack(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:919) TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:919) By default we don't care about checking if the library is shared child config.packages.BlasLapack 5.734950 ================================================================================ TEST alternateConfigureLibrary from config.packages.sundials(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.sundials(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.sundials 0.001010 ================================================================================ TEST alternateConfigureLibrary from config.packages.spai(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.001299 ================================================================================ TEST alternateConfigureLibrary from config.packages.pARMS(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:923) TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:923) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.000851 ================================================================================ TEST checkDependencies from config.packages.p4est(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:836) TESTING: checkDependencies from config.packages.p4est(config/BuildSystem/config/package.py:836) ================================================================================ TEST configureLibrary from config.packages.p4est(/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py:861) TESTING: configureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:861) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional p4est Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Could not locate an existing copy of P4EST: ['git.metis', 'Triangle', 'zlib-1.2.11', 'git.parmetis', 'hdf5-1.10.5'] Downloading p4est =============================================================================== Trying to download git://https://github.com/tisaac/p4est for P4EST =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://github.com/tisaac/p4est /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', '1727693b446ee0c987be701320db0cd5de617cfc^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '1727693b446ee0c987be701320db0cd5de617cfc'] stdout: 1727693b446ee0c987be701320db0cd5de617cfc Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', '1727693b446ee0c987be701320db0cd5de617cfc'] Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Running Executable WITHOUT threads to time it out Executing: ['git', 'submodule', 'update', '--init'] stdout: Submodule path 'sc': checked out 'f2c88cf80ca9dfc5038f0ac26a01d5015305dca2' =============================================================================== Trying to bootstrap p4est using autotools; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./bootstrap stdout: Running bootstrap in subdirectory sc --- This is the bootstrap script for libsc --- It is NOT required to run bootstrap to build from a tar.gz archive Development requires a libtool recent enough to contain LT_INIT (2.2 works) Current directory is /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est/sc libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `build-aux'. libtoolize: copying file `build-aux/config.guess' libtoolize: copying file `build-aux/config.sub' libtoolize: copying file `build-aux/install-sh' libtoolize: copying file `build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `config'. libtoolize: copying file `config/libtool.m4' libtoolize: copying file `config/ltoptions.m4' libtoolize: copying file `config/ltsugar.m4' libtoolize: copying file `config/ltversion.m4' libtoolize: copying file `config/lt~obsolete.m4' --- This is the bootstrap script for p4est --- Current directory is /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `build-aux'. libtoolize: copying file `build-aux/config.guess' libtoolize: copying file `build-aux/config.sub' libtoolize: copying file `build-aux/install-sh' libtoolize: copying file `build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `config'. libtoolize: copying file `config/libtool.m4' libtoolize: copying file `config/ltoptions.m4' libtoolize: copying file `config/ltsugar.m4' libtoolize: copying file `config/ltversion.m4' libtoolize: copying file `config/lt~obsolete.m4' All intermediate test results are stored in /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/config.packages.p4est P4EST was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Running configure on P4EST; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./configure --prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-g MAKE=/usr/bin/make --libdir=/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib CC="/usr/local/Cellar/mpich/3.3.2/bin/mpicc" CFLAGS="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/usr/local/Cellar/mpich/3.3.2/bin/mpicxx" CXXFLAGS="-fstack-protector -fno-stack-check -g -O0 -std=c++11" --disable-fortran --disable-fc --disable-f77 --disable-f90 --enable-shared --enable-mpi CPPFLAGS="-I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/usr/local/Cellar/mpich/3.3.2/include" LIBS="-Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz -llapack -lblas" --enable-memalign=16 stdout: checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... build-aux/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for a sed that does not truncate output... /usr/bin/sed checking Major version... 2 checking Minor version... 0 checking Point version... 7-1727 o--------------------------------------- | Checking options o--------------------------------------- o--------------------------------------- | Checking MPI and related programs o--------------------------------------- checking whether we are using MPI... yes checking whether we are using MPI I/O... yes checking whether we are using MPI_Init_thread... yes checking for mpiexec... mpiexec configure: F77 set to mpif77 configure: FC set to mpif90 configure: CC set to /usr/local/Cellar/mpich/3.3.2/bin/mpicc configure: CXX set to /usr/local/Cellar/mpich/3.3.2/bin/mpicxx checking whether the Fortran 77 compiler works... no Error running configure on P4EST: Could not execute "['./configure --prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-g MAKE=/usr/bin/make --libdir=/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib CC="/usr/local/Cellar/mpich/3.3.2/bin/mpicc" CFLAGS="-fstack-protector -fno-stack-check -Qunused-arguments -g -O0" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/usr/local/Cellar/mpich/3.3.2/bin/mpicxx" CXXFLAGS="-fstack-protector -fno-stack-check -g -O0 -std=c++11" --disable-fortran --disable-fc --disable-f77 --disable-f90 --enable-shared --enable-mpi CPPFLAGS="-I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/usr/local/Cellar/mpich/3.3.2/include" LIBS="-Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz -llapack -lblas" --enable-memalign=16']": checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... build-aux/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for a sed that does not truncate output... /usr/bin/sed checking Major version... 2 checking Minor version... 0 checking Point version... 7-1727 o--------------------------------------- | Checking options o--------------------------------------- o--------------------------------------- | Checking MPI and related programs o--------------------------------------- checking whether we are using MPI... yes checking whether we are using MPI I/O... yes checking whether we are using MPI_Init_thread... yes checking for mpiexec... mpiexec configure: F77 set to mpif77 configure: FC set to mpif90 configure: CC set to /usr/local/Cellar/mpich/3.3.2/bin/mpicc configure: CXX set to /usr/local/Cellar/mpich/3.3.2/bin/mpicxx checking whether the Fortran 77 compiler works... noconfigure: error: in `/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est': configure: error: Fortran 77 compiler cannot create executables See `config.log' for more details Output in config.log for P4EST: This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by p4est configure 2.0.7-1727, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/Users/markadams/Codes/petsc/arch-macosx-gnu-g MAKE=/usr/bin/make --libdir=/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib CC=/usr/local/Cellar/mpich/3.3.2/bin/mpicc CFLAGS=-fstack-protector -fno-stack-check -Qunused-arguments -g -O0 AR=/usr/bin/ar ARFLAGS=cr CXX=/usr/local/Cellar/mpich/3.3.2/bin/mpicxx CXXFLAGS=-fstack-protector -fno-stack-check -g -O0 -std=c++11 --disable-fortran --disable-fc --disable-f77 --disable-f90 --enable-shared --enable-mpi CPPFLAGS=-I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/usr/local/Cellar/mpich/3.3.2/include LIBS=-Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz -llapack -lblas --enable-memalign=16 ## --------- ## ## Platform. ## ## --------- ## hostname = MarksMac-221.local uname -m = x86_64 uname -r = 19.3.0 uname -s = Darwin uname -v = Darwin Kernel Version 19.3.0: Thu Jan 9 20:58:23 PST 2020; root:xnu-6153.81.5~1/RELEASE_X86_64 /usr/bin/uname -p = i386 /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 19.3.0: Thu Jan 9 20:58:23 PST 2020; root:xnu-6153.81.5~1/RELEASE_X86_64 Kernel configured for up to 8 processors. 4 processors are physically available. 8 processors are logically available. Processor type: x86_64h (Intel x86-64h Haswell) Processors active: 0 1 2 3 4 5 6 7 Primary memory available: 16.00 gigabytes Default processor set: 603 tasks, 3224 threads, 8 processors Load average: 2.38, Mach factor: 5.61 /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /Users/markadams/homebrew/bin PATH: /opt/anaconda2/bin PATH: /opt/anaconda2/bin PATH: /Users/markadams/opt/miniconda2/bin PATH: /opt/miniconda2/bin PATH: /Users/markadams/opt/miniconda3/bin PATH: /usr/local/opt/texinfo/bin PATH: /Users/markadams/homebrew/sbin PATH: /Users/markadams/homebrew/bin PATH: /Users/markadams/homebrew/bin PATH: /usr/local/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /usr/sbin PATH: /sbin PATH: /Library/TeX/texbin PATH: /opt/X11/bin PATH: /usr/local/bin PATH: . PATH: /opt/X11/bin PATH: /usr/local/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2994: checking for a BSD-compatible install configure:3062: result: /usr/bin/install -c configure:3073: checking whether build environment is sane configure:3128: result: yes configure:3279: checking for a thread-safe mkdir -p configure:3318: result: build-aux/install-sh -c -d configure:3325: checking for gawk configure:3355: result: no configure:3325: checking for mawk configure:3355: result: no configure:3325: checking for nawk configure:3355: result: no configure:3325: checking for awk configure:3341: found /usr/bin/awk configure:3352: result: awk configure:3363: checking whether /usr/bin/make sets $(MAKE) configure:3385: result: yes configure:3414: checking whether /usr/bin/make supports nested variables configure:3431: result: yes configure:3567: checking whether /usr/bin/make supports nested variables configure:3584: result: yes configure:3595: checking for a sed that does not truncate output configure:3659: result: /usr/bin/sed configure:3670: checking Major version configure:3672: result: 2 configure:3674: checking Minor version configure:3676: result: 0 configure:3678: checking Point version configure:3680: result: 7-1727 configure:3913: checking whether we are using MPI configure:3915: result: yes configure:3932: checking whether we are using MPI I/O configure:3934: result: yes configure:3951: checking whether we are using MPI_Init_thread configure:3953: result: yes configure:3963: checking for mpiexec configure:3979: found /usr/local/bin/mpiexec configure:3990: result: mpiexec configure:4027: F77 set to mpif77 configure:4034: FC set to mpif90 configure:4040: CC set to /usr/local/Cellar/mpich/3.3.2/bin/mpicc configure:4046: CXX set to /usr/local/Cellar/mpich/3.3.2/bin/mpicxx configure:4299: checking for Fortran 77 compiler version configure:4308: mpif77 --version >&5 GNU Fortran (Homebrew GCC 9.2.0_3) 9.2.0 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4319: $? = 0 configure:4308: mpif77 -v >&5 mpifort for MPICH version 3.3.2 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/9.2.0_3/libexec/gcc/x86_64-apple-darwin18/9.2.0/lto-wrapper Target: x86_64-apple-darwin18 Configured with: ../configure --build=x86_64-apple-darwin18 --prefix=/usr/local/Cellar/gcc/9.2.0_3 --libdir=/usr/local/Cellar/gcc/9.2.0_3/lib/gcc/9 --disable-nls --enable-checking=release --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-9 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --with-pkgversion='Homebrew GCC 9.2.0_3' --with-bugurl=https://github.com/Homebrew/homebrew-core/issues --disable-multilib --with-native-system-header-dir=/usr/include --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk Thread model: posix gcc version 9.2.0 (Homebrew GCC 9.2.0_3) configure:4319: $? = 0 configure:4308: mpif77 -V >&5 gfortran: error: unrecognized command line option '-V' configure:4319: $? = 1 configure:4308: mpif77 -qversion >&5 gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'? configure:4319: $? = 1 configure:4334: checking whether the Fortran 77 compiler works configure:4356: mpif77 conftest.f -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz -llapack -lblas >&5 ld: library not found for -llapack collect2: error: ld returned 1 exit status configure:4360: $? = 1 configure:4398: result: no configure: failed program was: | program main | | end configure:4403: error: in `/Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est': configure:4405: error: Fortran 77 compiler cannot create executables See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=/usr/local/Cellar/mpich/3.3.2/bin/mpicc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-fstack-protector -fno-stack-check -Qunused-arguments -g -O0' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/usr/local/Cellar/mpich/3.3.2/include' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-fstack-protector -fno-stack-check -g -O0 -std=c++11' ac_cv_env_CXX_set=set ac_cv_env_CXX_value=/usr/local/Cellar/mpich/3.3.2/bin/mpicxx ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set=set ac_cv_env_LIBS_value='-Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz -llapack -lblas' ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=awk ac_cv_prog_P4EST_MPIRUN=mpiexec ac_cv_prog_make__usr_bin_make_set=yes am_cv_make_support_nested_variables=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est/build-aux/missing aclocal-1.14' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='/usr/bin/ar' AUTOCONF='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est/build-aux/missing autoconf' AUTOHEADER='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est/build-aux/missing autoheader' AUTOMAKE='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est/build-aux/missing automake-1.14' AWK='awk' CC='/usr/local/Cellar/mpich/3.3.2/bin/mpicc' CCDEPMODE='' CFLAGS='-fstack-protector -fno-stack-check -Qunused-arguments -g -O0' CPP='' CPPFLAGS='-I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/usr/local/Cellar/mpich/3.3.2/include' CXX='/usr/local/Cellar/mpich/3.3.2/bin/mpicxx' CXXCPP='' CXXDEPMODE='' CXXFLAGS='-fstack-protector -fno-stack-check -g -O0 -std=c++11' CYGPATH_W='echo' C_VERSION='' DEFS='' DEPDIR='' DLLTOOL='' DSYMUTIL='' DUMPBIN='' ECHO_C='\c' ECHO_N='' ECHO_T='' EGREP='' EXEEXT='' F77='mpif77' FC='mpif90' FCFLAGS='' FCLIBS='' FFLAGS='' FGREP='' FLIBS='' GREP='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='' LDFLAGS='' LIBOBJS='' LIBS='-Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib -lz -llapack -lblas' LIBTOOL='' LINT='' LINT_FALSE='' LINT_FLAGS='' LINT_TRUE='' LIPO='' LN_S='' LTLIBOBJS='' MAKEINFO='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est/build-aux/missing makeinfo' MANIFEST_TOOL='' MKDIR_P='build-aux/install-sh -c -d' MPI_INCLUDES='' MPI_INCLUDE_PATH='' NM='' NMEDIT='' OBJDUMP='' OBJEXT='' OTOOL64='' OTOOL='' P4EST_DISTCLEAN='' P4EST_DIST_DENY_FALSE='' P4EST_DIST_DENY_TRUE='' P4EST_ENABLE_BUILD_2D_FALSE='#' P4EST_ENABLE_BUILD_2D_TRUE='' P4EST_ENABLE_BUILD_3D_FALSE='#' P4EST_ENABLE_BUILD_3D_TRUE='' P4EST_ENABLE_BUILD_P6EST_FALSE='#' P4EST_ENABLE_BUILD_P6EST_TRUE='' P4EST_ENABLE_DEBUG_FALSE='' P4EST_ENABLE_DEBUG_TRUE='#' P4EST_ENABLE_MEMALIGN_FALSE='' P4EST_ENABLE_MEMALIGN_TRUE='' P4EST_ENABLE_MPIIO_FALSE='#' P4EST_ENABLE_MPIIO_TRUE='' P4EST_ENABLE_MPITHREAD_FALSE='#' P4EST_ENABLE_MPITHREAD_TRUE='' P4EST_ENABLE_MPI_FALSE='#' P4EST_ENABLE_MPI_TRUE='' P4EST_ENABLE_OPENMP_FALSE='' P4EST_ENABLE_OPENMP_TRUE='' P4EST_ENABLE_PTHREAD_FALSE='' P4EST_ENABLE_PTHREAD_TRUE='' P4EST_ENABLE_VTK_BINARY_FALSE='#' P4EST_ENABLE_VTK_BINARY_TRUE='' P4EST_ENABLE_VTK_COMPRESSION_FALSE='#' P4EST_ENABLE_VTK_COMPRESSION_TRUE='' P4EST_ENABLE_VTK_DOUBLES_FALSE='' P4EST_ENABLE_VTK_DOUBLES_TRUE='#' P4EST_F77_COMPILER='' P4EST_FC_COMPILER='' P4EST_HAVE_LPTHREAD_FALSE='' P4EST_HAVE_LPTHREAD_TRUE='' P4EST_HAVE_LUA_FALSE='' P4EST_HAVE_LUA_TRUE='' P4EST_HAVE_OPENMP_FALSE='' P4EST_HAVE_OPENMP_TRUE='' P4EST_HAVE_ZLIB_FALSE='' P4EST_HAVE_ZLIB_TRUE='' P4EST_MPIRUN='mpiexec' P4EST_MPIRUN_FALSE='#' P4EST_MPIRUN_TRUE='' P4EST_MPI_TEST_FLAGS='-n 2' P4EST_PETSC_INCLUDE_DIRS='' P4EST_PETSC_LINK_LIBS='' P4EST_PROVIDE_GETOPT_FALSE='' P4EST_PROVIDE_GETOPT_TRUE='' P4EST_PROVIDE_OBSTACK_FALSE='' P4EST_PROVIDE_OBSTACK_TRUE='' P4EST_SC_AMFLAGS='' P4EST_SC_CPPFLAGS='' P4EST_SC_LDADD='' P4EST_SC_MK_INCLUDE='' P4EST_SC_MK_USE_FALSE='' P4EST_SC_MK_USE_TRUE='' P4EST_SC_SUBDIR='' P4EST_WITH_BLAS_FALSE='' P4EST_WITH_BLAS_TRUE='' P4EST_WITH_LAPACK_FALSE='' P4EST_WITH_LAPACK_TRUE='' P4EST_WITH_METIS_FALSE='' P4EST_WITH_METIS_TRUE='' P4EST_WITH_PETSC_FALSE='' P4EST_WITH_PETSC_TRUE='' P4EST_WITH_SC_FALSE='' P4EST_WITH_SC_TRUE='' PACKAGE='p4est' PACKAGE_BUGREPORT='info@p4est.org' PACKAGE_NAME='p4est' PACKAGE_PREFIX='P4EST' PACKAGE_STRING='p4est 2.0.7-1727' PACKAGE_TARNAME='p4est' PACKAGE_URL='' PACKAGE_VERSION='2.0.7-1727' PATH_SEPARATOR=':' PETSCARCH_PROG='' RANLIB='' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='' VERSION='2.0.7-1727' ac_ct_AR='' ac_ct_CC='' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='' am__include='' am__isrc='' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='' build_alias='' build_cpu='' build_os='' build_vendor='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='' host_alias='' host_cpu='' host_os='' host_vendor='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /Users/markadams/Codes/petsc/arch-macosx-gnu-g/externalpackages/git.p4est/build-aux/install-sh' libdir='/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/Users/markadams/Codes/petsc/arch-macosx-gnu-g' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "p4est" #define PACKAGE_TARNAME "p4est" #define PACKAGE_VERSION "2.0.7-1727" #define PACKAGE_STRING "p4est 2.0.7-1727" #define PACKAGE_BUGREPORT "info@p4est.org" #define PACKAGE_URL "" #define PACKAGE "p4est" #define VERSION "2.0.7-1727" #define VERSION_MAJOR 2 #define VERSION_MINOR 0 #define VERSION_POINT 7-1727 #define VTK_BINARY 1 #define ENABLE_VTK_BINARY 1 #define VTK_COMPRESSION 1 #define ENABLE_VTK_COMPRESSION 1 #define BUILD_2D 1 #define ENABLE_BUILD_2D 1 #define BUILD_3D 1 #define ENABLE_BUILD_3D 1 #define BUILD_P6EST 1 #define ENABLE_BUILD_P6EST 1 #define MPI 1 #define ENABLE_MPI 1 #define MPIIO 1 #define ENABLE_MPIIO 1 #define ENABLE_MPITHREAD 1 configure: exit 77 **** Configure header /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define IS_COLORING_MAX USHRT_MAX #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_HAVE_C99 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_DEBUGGER "lldb" #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_DATE_GIT "2020-03-05 00:53:00 +0000" #define PETSC_VERSION_GIT "v3.12.4-871-g713946ae56" #define PETSC_MISSING_LAPACK_lsame 1 #define PETSC_HAVE_MPICH_NUMVERSION 30302300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_Alignx(a,b) #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_MEMALIGN 16 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_HAVE_CLOSURE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_HDF5_HAVE_ZLIB 1 #define PETSC_PYTHON_EXE "/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python" #define PETSC_HAVE_VALGRIND 1 #endif **** C specific Configure header /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-bVUXvO/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running configure on P4EST ******************************************************************************* File "/Users/markadams/Codes/petsc/config/configure.py", line 447, in petsc_configure framework.configure(out = sys.stdout) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py", line 1229, in configure self.processChildren() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py", line 1218, in processChildren self.serialEvaluation(self.childGraph) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/framework.py", line 1193, in serialEvaluation child.configure() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 1101, in configure self.executeTest(self.configureLibrary) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/base.py", line 139, in executeTest ret = test(*args,**kargs) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 868, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 446, in generateGuesses d = self.checkDownload() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 580, in checkDownload return self.getInstallDir() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 342, in getInstallDir installDir = self.Install() File "/Users/markadams/Codes/petsc/config/BuildSystem/config/packages/p4est.py", line 73, in Install return config.package.GNUPackage.Install(self) File "/Users/markadams/Codes/petsc/config/BuildSystem/config/package.py", line 1618, in Install raise RuntimeError('Error running configure on ' + self.PACKAGE) ================================================================================ Finishing configure run at Thu, 05 Mar 2020 08:24:48 -0500 ================================================================================