<div dir="ltr"><br>Satish,<div><br></div><div>Do you have any suggestions for this?</div><div><br></div><div>Chris,</div><div><br></div><div>It may be helpful if you could share the petsc configuration log file with us?</div><div><br></div><div><br></div><div><br></div><div>Fande,<br><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">---------- Forwarded message ---------<br>From: <strong class="gmail_sendername" dir="auto">Chris Thompson</strong> <span dir="auto"><<a href="mailto:thompsoc91@gmail.com">thompsoc91@gmail.com</a>></span><br>Date: Tue, Dec 31, 2019 at 9:53 AM<br>Subject: Moose install troubleshooting help<br>To: moose-users <<a href="mailto:moose-users@googlegroups.com">moose-users@googlegroups.com</a>><br></div><br><br><div dir="ltr">Dear All,<div>I could use some help or a pointer in the right direction.</div><div><br></div><div>I have been following the directions at <a href="https://mooseframework.inl.gov/getting_started/installation/hpc_install_moose.html" target="_blank">https://mooseframework.inl.gov/getting_started/installation/hpc_install_moose.html</a></div><div>All was going well until "make PETSC_DIR=$STACK_SRC/petsc-3.11.4 PETSC_ARCH=linux-opt install". I tried running "make --debug=v PETSC_DIR=$STACK_SRC/petsc-3.11.4 PETSC_ARCH=linux-opt install", but that didn't produce any more helpful information.</div><div><br></div><div>This on a CentOS system running 7.6</div><div><br></div><div>Here is the error / output I am getting.</div><div><br></div><div><div>rogue /usr/local/neapps/moose/stack_temp/petsc-3.11.4 926$ make --debug=v PETSC_DIR=/usr/local/neapps/moose/stack_temp/petsc-3.11.4 PETSC_ARCH=linux-opt install</div><div>GNU Make 3.82</div><div>Built for x86_64-redhat-linux-gnu</div><div>Copyright (C) 2010 Free Software Foundation, Inc.</div><div>License GPLv3+: GNU GPL version 3 or later <<a href="http://gnu.org/licenses/gpl.html" target="_blank">http://gnu.org/licenses/gpl.html</a>></div><div>This is free software: you are free to change and redistribute it.</div><div>There is NO WARRANTY, to the extent permitted by law.</div><div>Reading makefiles...</div><div>Reading makefile `makefile'...</div><div>Reading makefile `linux-opt/lib/petsc/conf/petscvariables' (search path) (no ~ expansion)...</div><div>Reading makefile `/usr/local/neapps/moose/stack_temp/petsc-3.11.4/lib/petsc/conf/variables' (search path) (no ~ expansion)...</div><div>Reading makefile `/usr/local/neapps/moose/stack_temp/petsc-3.11.4/linux-opt/lib/petsc/conf/petscvariables' (search path) (no ~ expansion)...</div><div>Reading makefile `/usr/local/neapps/moose/stack_temp/petsc-3.11.4/lib/petsc/conf/rules' (search path) (no ~ expansion)...</div><div>Reading makefile `/usr/local/neapps/moose/stack_temp/petsc-3.11.4/linux-opt/lib/petsc/conf/petscrules' (search path) (no ~ expansion)...</div><div>Reading makefile `/usr/local/neapps/moose/stack_temp/petsc-3.11.4/lib/petsc/conf/test.common' (search path) (no ~ expansion)...</div><div>Updating goal targets....</div><div>Considering target file `install'.</div><div>File `install' does not exist.</div><div> Finished prerequisites of target file `install'.</div><div>Must remake target `install'.</div><div>Invoking recipe from makefile:250 to update target `install'.</div><div>*** Using PETSC_DIR=/usr/local/neapps/moose/stack_temp/petsc-3.11.4 PETSC_ARCH=linux-opt ***</div><div>*** Installing PETSc at prefix location: /usr/local/neapps/moose/petsc-3.11.4 ***</div><div>Traceback (most recent call last):</div><div> File "./config/install.py", line 434, in <module></div><div> Installer(sys.argv[1:]).run()</div><div> File "./config/install.py", line 428, in run</div><div> self.runcopy()</div><div> File "./config/install.py", line 407, in runcopy</div><div> self.installIncludes()</div><div> File "./config/install.py", line 305, in installIncludes</div><div> self.copies.extend(self.copytree(self.rootIncludeDir, self.destIncludeDir,exclude = exclude))</div><div> File "./config/install.py", line 246, in copytree</div><div> raise shutil.Error(errors)</div><div>shutil.Error: ['/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc', '/usr/local/neapps/moose/petsc-3.11.4/include/petsc',</div><div> '[\'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/private\', \'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private\',</div><div> \'[\\\'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/private/kernels\\\',</div><div> \\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private/kernels\\\',</div><div> \\\'[\\\\\\\'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/private/kernels\\\\\\\',</div><div> \\\\\\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private/kernels\\\\\\\',</div><div> "[Errno 1] Operation not permitted: \\\\\\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private/kernels\\\\\\\'"]\\\',</div><div> \\\'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/private\\\', \\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private\\\',</div><div> "[Errno 1] Operation not permitted: \\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private\\\'"]\',</div><div> \'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/finclude\', \'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/finclude\',</div><div> \'[\\\'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/finclude\\\', \\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/finclude\\\',</div><div> "[Errno 1] Operation not permitted: \\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/finclude\\\'"]\', \'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc\',</div><div> \'/usr/local/neapps/moose/petsc-3.11.4/include/petsc\', "[Errno 1] Operation not permitted: \'/usr/local/neapps/moose/petsc-3.11.4/include/petsc\'"]',</div><div> '/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include', '/usr/local/neapps/moose/petsc-3.11.4/include', "[Errno 1] Operation not permitted: '/usr/local/neapps/moose/petsc-3.11.4/include'"]</div><div>make: *** [install] Error 1</div></div><div><br></div><div>I'm not sure how to proceed with this error.</div><div><br></div><div>Thank you,</div><div>Chris</div><div><br></div></div>
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