================================================================================ ================================================================================ Starting configure run at Thu, 05 Dec 2019 22:10:19 -0500 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-scalar-type=real --with-x=0 --with-hdf5 --download-hdf5=1 --with-single-library=1 --with-shared-libraries=0 --with-log=0 --with-clanguage=C++ --with-cxx-dialect=C++11 --CXXFLAGS="-fopenmp -fPIC" --CFLAGS="-fopenmp -fPIC" --with-fortran=0 --FFLAGS="-fopenmp -fPIC" --with-64-bit-indices=0 --with-debugging=0 --with-cc=mpicc --with-fc=mpif77 --with-cxx=mpicxx COPTFLAGS=-O3 CXXOPTFLAGS=-O3 FOPTFLAGS=-O3 --with-fortran-kernels=0 --download-fblaslapack Working directory: /home/michael/libs/petsc/build-real3.11 Machine platform: ('CYGWIN_NT-10.0-18362', 'DESKTOP-LU0ITNV', '3.0.7-338.x86_64', '2019-04-30 18:08 UTC', 'x86_64', '') Python version: 2.7.16 (default, Mar 20 2019, 12:15:19) [GCC 7.4.0] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/framework.py:830) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:830) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/iCLS Client/dbx...not found Checking for program /cygdrive/c/Program Files/Intel/iCLS Client/dbx...not found Checking for program /cygdrive/c/WINDOWS/system32/dbx...not found Checking for program /cygdrive/c/WINDOWS/dbx...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/dbx...not found Checking for program /cygdrive/c/WINDOWS/System32/WindowsPowerShell/v1.0/dbx...not found Checking for program /cygdrive/c/Program Files/PuTTY/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL/dbx...not found Checking for program /cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/DAL/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT/dbx...not found Checking for program /cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/IPT/dbx...not found Checking for program /cygdrive/c/WINDOWS/System32/OpenSSH/dbx...not found Checking for program /cygdrive/c/Program Files/MiKTeX 2.9/miktex/bin/x64/dbx...not found Checking for program /cygdrive/c/Users/mpovo/AppData/Local/Programs/LLNL/VisIt 2.13.3/dbx...not found Checking for program /cygdrive/c/Users/mpovo/AppData/Local/Microsoft/WindowsApps/dbx...not found Checking for program /usr/lib/lapack/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/iCLS Client/xdb...not found Checking for program /cygdrive/c/Program Files/Intel/iCLS Client/xdb...not found Checking for program /cygdrive/c/WINDOWS/system32/xdb...not found Checking for program /cygdrive/c/WINDOWS/xdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/xdb...not found Checking for program /cygdrive/c/WINDOWS/System32/WindowsPowerShell/v1.0/xdb...not found Checking for program /cygdrive/c/Program Files/PuTTY/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL/xdb...not found Checking for program /cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/DAL/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT/xdb...not found Checking for program /cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/IPT/xdb...not found Checking for program /cygdrive/c/WINDOWS/System32/OpenSSH/xdb...not found Checking for program /cygdrive/c/Program Files/MiKTeX 2.9/miktex/bin/x64/xdb...not found Checking for program /cygdrive/c/Users/mpovo/AppData/Local/Programs/LLNL/VisIt 2.13.3/xdb...not found Checking for program /cygdrive/c/Users/mpovo/AppData/Local/Microsoft/WindowsApps/xdb...not found Checking for program /usr/lib/lapack/xdb...not found Executing: uname -s stdout: CYGWIN_NT-10.0 Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.21.0 ================================================================================ TEST configureMercurial from config.sourceControl(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 5.0.2) ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 11 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Jun, 26, 2019" #define PETSC_VERSION_GIT "v3.11.3" #define PETSC_VERSION_DATE_GIT "2019-06-26 15:29:32 -0500" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) This is a tarball installation ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/arch.py:25) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:25) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/arch.py:37) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:37) Checks PETSC_ARCH and sets if not set ================================================================================ TEST setInstallDir from PETSc.options.installDir(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/home/michael/libs/petsc/build-real3.11/linux3.11" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/installDir.py:79) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:79) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/installDir.py:72) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:72) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/installDir.py:56) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:56) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/michael/libs/petsc/build-real3.11/linux3.11/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/installDir.py:92) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:92) ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/home/michael/libs/petsc/build-real3.11/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:1650) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1650) **** printenv **** TMP=/tmp PSModulePath=C:\Program Files\WindowsPowerShell\Modules;C:\WINDOWS\system32\WindowsPowerShell\v1.0\Modules SYSTEMDRIVE=C: USERDOMAIN=DESKTOP-LU0ITNV DriverData=C:\Windows\System32\Drivers\DriverData OneDrive=C:\Users\mpovo\OneDrive COMPUTERNAME=DESKTOP-LU0ITNV XDG_CURRENT_DESKTOP=X-Cygwin COMMONPROGRAMFILES=C:\Program Files\Common Files PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 158 Stepping 9, GenuineIntel USER=michael PROCESSOR_REVISION=9e09 HOME=/home/michael SYSTEMROOT=C:\WINDOWS PATH=/usr/local/bin:/usr/bin:/cygdrive/c/Program Files (x86)/Intel/iCLS Client:/cygdrive/c/Program Files/Intel/iCLS Client:/cygdrive/c/WINDOWS/system32:/cygdrive/c/WINDOWS:/cygdrive/c/WINDOWS/System32/Wbem:/cygdrive/c/WINDOWS/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files/PuTTY:/cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL:/cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/DAL:/cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT:/cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/IPT:/cygdrive/c/WINDOWS/System32/OpenSSH:/cygdrive/c/Program Files/MiKTeX 2.9/miktex/bin/x64:/cygdrive/c/Users/mpovo/AppData/Local/Programs/LLNL/VisIt 2.13.3:/cygdrive/c/Users/mpovo/AppData/Local/Microsoft/WindowsApps:/usr/lib/lapack DISPLAY=:0 GNOME_KEYRING_CONTROL=/home/michael/.cache/keyring-YF30B0 MAKE_TERMERR=/dev/pty1 LANG=en_US.UTF-8 INFOPATH=/usr/local/info:/usr/share/info:/usr/info TERM=xterm SHELL=/bin/bash TZ=America/Indianapolis XAUTHORITY=/home/michael/.Xauthority TEMP=/tmp ProgramData=C:\ProgramData SHLVL=4 CommonProgramFiles(x86)=C:\Program Files (x86)\Common Files QT_QPA_PLATFORMTHEME=qt5ct PROCESSOR_ARCHITECTURE=AMD64 PWD=/home/michael/libs/petsc/build-real3.11 ALLUSERSPROFILE=C:\ProgramData !::=::\ PETSC_DIR=/home/michael/libs/petsc/build-real3.11 MAKEFLAGS= LOCALAPPDATA=C:\Users\mpovo\AppData\Local FPS_BROWSER_USER_PROFILE_STRING=Default IMSETTINGS_INTEGRATE_DESKTOP=no USERDOMAIN_ROAMINGPROFILE=DESKTOP-LU0ITNV MFLAGS= ProgramFiles(x86)=C:\Program Files (x86) ProgramW6432=C:\Program Files USERNAME=michael IMSETTINGS_MODULE=none LOGONSERVER=\\DESKTOP-LU0ITNV COMSPEC=C:\WINDOWS\system32\cmd.exe HOMEPATH=\Users\mpovo SSH_AUTH_SOCK=/home/michael/.cache/keyring-YF30B0/ssh EXECIGNORE=*.dll __COMPAT_LAYER=DetectorsMessageBoxErrors FPS_BROWSER_APP_PROFILE_STRING=Internet Explorer XMODIFIERS=@im=none ORIGINAL_PATH=/cygdrive/c/Program Files (x86)/Intel/iCLS Client:/cygdrive/c/Program Files/Intel/iCLS Client:/cygdrive/c/WINDOWS/system32:/cygdrive/c/WINDOWS:/cygdrive/c/WINDOWS/System32/Wbem:/cygdrive/c/WINDOWS/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files/PuTTY:/cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL:/cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/DAL:/cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT:/cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/IPT:/cygdrive/c/WINDOWS/System32/OpenSSH:/cygdrive/c/Program Files/MiKTeX 2.9/miktex/bin/x64:/cygdrive/c/Users/mpovo/AppData/Local/Programs/LLNL/VisIt 2.13.3:/cygdrive/c/Users/mpovo/AppData/Local/Microsoft/WindowsApps PRINTER=Brother MFC-7365DN VISITLOC=C:\Users\mpovo\AppData\Local\Programs\LLNL\VisIt 2.13.3 XDG_MENU_PREFIX=xwin- PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC CommonProgramW6432=C:\Program Files\Common Files DBUS_SESSION_BUS_ADDRESS=unix:path=/tmp/dbus-vqyKFMFgXH,guid=e547935afd106abe6921e9665de9a79b _=./config/configure.py SESSIONNAME=Console WINDIR=C:\WINDOWS HOMEDRIVE=C: APPDATA=C:\Users\mpovo\AppData\Roaming PROGRAMFILES=C:\Program Files PROFILEREAD=true OLDPWD=/home/michael/libs/petsc HOSTNAME=DESKTOP-LU0ITNV NUMBER_OF_PROCESSORS=4 MAKELEVEL=1 PETSC_ARCH=linux3.11 PROCESSOR_LEVEL=6 MAKE_TERMOUT=/dev/pty1 OS=Windows_NT PUBLIC=C:\Users\Public USERPROFILE=C:\Users\mpovo ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:1657) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1657) =============================================================================== ***** WARNING: MAKEFLAGS (set to ) found in environment variables - ignoring use ./configure MAKEFLAGS=$MAKEFLAGS if you really want to use that value ****** =============================================================================== ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:1687) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1687) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:1620) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1620) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:1641) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1641) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:444) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:444) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:454) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:454) Initialize the compiler and linker flags Initialized CFLAGS to -fopenmp -fPIC Initialized CFLAGS to -fopenmp -fPIC Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to -fopenmp -fPIC Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to -fopenmp -fPIC Initialized FFLAGS to -fopenmp -fPIC Initialized LDFLAGS to Initialized CPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:587) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:587) Locate a functional C compiler Checking for program /usr/local/bin/mpicc...not found Checking for program /usr/bin/mpicc...found Defined make macro "CC" to "mpicc" All intermediate test results are stored in /tmp/petsc-Llvze6 All intermediate test results are stored in /tmp/petsc-Llvze6/config.setCompilers Executing: mpicc -c -o /tmp/petsc-Llvze6/config.setCompilers/conftest.o -I/tmp/petsc-Llvze6/config.setCompilers -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-Llvze6/config.setCompilers/conftest.o -I/tmp/petsc-Llvze6/config.setCompilers -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-Llvze6/config.setCompilers/conftest.exe -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.o Executing: mpicc -c -o /tmp/petsc-Llvze6/config.setCompilers/conftest.o -I/tmp/petsc-Llvze6/config.setCompilers -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-Llvze6/config.setCompilers/conftest.exe -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: mpicc -c -o /tmp/petsc-Llvze6/config.setCompilers/conftest.o -I/tmp/petsc-Llvze6/config.setCompilers -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-Llvze6/config.setCompilers/conftest.exe -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.o Testing executable /tmp/petsc-Llvze6/config.setCompilers/conftest.exe to see if it can be run Executing: /tmp/petsc-Llvze6/config.setCompilers/conftest.exe Executing: /tmp/petsc-Llvze6/config.setCompilers/conftest.exe ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:620) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:620) Locate a functional C preprocessor Checking for program /usr/local/bin/mpicc...not found Checking for program /usr/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Executing: mpicc -E -I/tmp/petsc-Llvze6/config.setCompilers /tmp/petsc-Llvze6/config.setCompilers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:661) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:661) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:701) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:701) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py:814) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:814) Locate a functional Cxx compiler Checking for program /usr/local/bin/mpicxx...not found Checking for program /usr/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Executing: mpicxx -c -o /tmp/petsc-Llvze6/config.setCompilers/conftest.o -I/tmp/petsc-Llvze6/config.setCompilers -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -c -o /tmp/petsc-Llvze6/config.setCompilers/conftest.o -I/tmp/petsc-Llvze6/config.setCompilers -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-Llvze6/config.setCompilers/conftest.exe -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lmpi_cxx collect2: error: ld returned 1 exit status Error testing C++ compiler: Cannot compile/link Cxx with mpicxx. MPI installation mpicxx is likely incorrect. Use --with-mpi-dir to indicate an alternate MPI. Deleting "CXX" Checking for program /usr/local/bin/mpicxx...not found Checking for program /usr/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Executing: mpicxx -c -o /tmp/petsc-Llvze6/config.setCompilers/conftest.o -I/tmp/petsc-Llvze6/config.setCompilers -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.cpp Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -c -o /tmp/petsc-Llvze6/config.setCompilers/conftest.o -I/tmp/petsc-Llvze6/config.setCompilers -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.cpp Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-Llvze6/config.setCompilers/conftest.exe -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lmpi_cxx collect2: error: ld returned 1 exit status Error testing C++ compiler: Cannot compile/link Cxx with mpicxx. MPI installation mpicxx is likely incorrect. Use --with-mpi-dir to indicate an alternate MPI. Deleting "CXX" Checking for program /usr/local/bin/mpicxx...not found Checking for program /usr/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Executing: mpicxx -c -o /tmp/petsc-Llvze6/config.setCompilers/conftest.o -I/tmp/petsc-Llvze6/config.setCompilers -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.C Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -c -o /tmp/petsc-Llvze6/config.setCompilers/conftest.o -I/tmp/petsc-Llvze6/config.setCompilers -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.C Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-Llvze6/config.setCompilers/conftest.exe -fopenmp -fPIC /tmp/petsc-Llvze6/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lmpi_cxx collect2: error: ld returned 1 exit status Error testing C++ compiler: Cannot compile/link Cxx with mpicxx. MPI installation mpicxx is likely incorrect. Use --with-mpi-dir to indicate an alternate MPI. Deleting "CXX" ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- C++ compiler you provided with -with-cxx=mpicxx does not work. Cannot compile/link Cxx with mpicxx. ******************************************************************************* File "./config/configure.py", line 411, in petsc_configure framework.configure(out = sys.stdout) File "/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/framework.py", line 1086, in configure self.processChildren() File "/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/framework.py", line 1075, in processChildren self.serialEvaluation(self.childGraph) File "/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/framework.py", line 1056, in serialEvaluation child.configure() File "/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py", line 1723, in configure self.executeTest(self.checkCxxCompiler) File "/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/base.py", line 139, in executeTest ret = test(*args,**kargs) File "/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py", line 821, in checkCxxCompiler for compiler in self.generateCxxCompilerGuesses(): File "/home/michael/libs/petsc/build-real3.11/config/BuildSystem/config/setCompilers.py", line 733, in generateCxxCompilerGuesses raise RuntimeError('C++ compiler you provided with -with-cxx='+self.argDB['with-cxx']+' does not work.'+'\n'+self.mesg) ================================================================================ Finishing configure run at Thu, 05 Dec 2019 22:10:42 -0500 ================================================================================