No protocol specified writing vector in hdf5 to vector.dat ... HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 0: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Error in external library [0]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [0]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [0]PETSC ERROR: ./ex10 on a named xrmlite.phys.northwestern.edu by sajid Fri Oct 11 15:18:03 2019 [0]PETSC ERROR: Configure options --prefix=/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/petsc-3.12.0-vd5fzdkjifrymtkrnu24c7nk3ozwyhah --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O2 -march=native" FFLAGS="-O2 -march=native" CXXFLAGS="-O2 -march=native" --with-cc=/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/mpich-3.3-ig4cr2xw2x63bqs5rnmhfshln4iv7av5/bin/mpicc --with-cxx=/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/mpich-3.3-ig4cr2xw2x63bqs5rnmhfshln4iv7av5/bin/mpic++ --with-fc=/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/mpich-3.3-ig4cr2xw2x63bqs5rnmhfshln4iv7av5/bin/mpif90 --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=1 --with-64-bit-indices=0 --with-blaslapack-lib="/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/intel-mkl-2019.3.199-kzcly5rtcjbkwtnm6tri6kkexnwoat5m/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/libmkl_intel_lp64.so /home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/intel-mkl-2019.3.199-kzcly5rtcjbkwtnm6tri6kkexnwoat5m/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/libmkl_sequential.so /home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/intel-mkl-2019.3.199-kzcly5rtcjbkwtnm6tri6kkexnwoat5m/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=0 --with-hdf5=1 --with-hdf5-dir=/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/hdf5-1.10.5-pb3cssvvwbqajof6jzbzamdmqmg335jr --with-hypre=0 --with-parmetis=0 --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/fftw-3.3.8-tvrdpwxmyqiv4t7bqhj2mjgu7gwpuzl5 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/zlib-1.2.11-jqrcjdjnrxvouufhjtxbfvfms23fsqpx/include --with-zlib-lib=/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/gcc-8.3.0/zlib-1.2.11-jqrcjdjnrxvouufhjtxbfvfms23fsqpx/lib/libz.so --with-zlib=1 [0]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /tmp/sajid/spack-stage/petsc-3.12.0-vd5fzdkjifrymtkrnu24c7nk3ozwyhah/spack-src/src/vec/vec/impls/mpi/pdvec.c [0]PETSC ERROR: #2 VecView_Seq() line 681 in /tmp/sajid/spack-stage/petsc-3.12.0-vd5fzdkjifrymtkrnu24c7nk3ozwyhah/spack-src/src/vec/vec/impls/seq/bvec2.c [0]PETSC ERROR: #3 VecView() line 574 in /tmp/sajid/spack-stage/petsc-3.12.0-vd5fzdkjifrymtkrnu24c7nk3ozwyhah/spack-src/src/vec/vec/interface/vector.c [0]PETSC ERROR: #4 main() line 47 in ex10.c [0]PETSC ERROR: PETSc Option Table entries: [0]PETSC ERROR: -m 268435456 [0]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 0