Multi-slice xwp on 256 processors! mx : 16384, my: 16384, energy(in eV) : 2.500000e+04 Slice Num : 0 Slice Num : 1 Slice Num : 2 Slice Num : 3 Slice Num : 4 Slice Num : 5 Slice Num : 6 Slice Num : 7 Slice Num : 8 Slice Num : 9 Slice Num : 10 Slice Num : 11 Slice Num : 12 Slice Num : 13 Slice Num : 14 Slice Num : 15 Slice Num : 16 Slice Num : 17 Slice Num : 18 Slice Num : 19 Slice Num : 20 Slice Num : 21 Slice Num : 22 Slice Num : 23 Slice Num : 24 Done! HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 192: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 211: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 177: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 170: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [192]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [192]PETSC ERROR: Error in external library [192]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [211]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [211]PETSC ERROR: Error in external library [211]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [211]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [211]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [211]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset [192]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [192]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [192]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [192]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 72: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [211]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [211]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [170]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [170]PETSC ERROR: Error in external library [170]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [170]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [170]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [170]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [192]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [192]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [192]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [192]PETSC ERROR: #4 main() line 136 in ex_ms.c [192]PETSC ERROR: PETSc Option Table entries: [192]PETSC ERROR: -log_view [192]PETSC ERROR: -prop_steps 25 [192]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- [170]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[211]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [211]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [211]PETSC ERROR: #4 main() line 136 in ex_ms.c [211]PETSC ERROR: PETSc Option Table entries: [211]PETSC ERROR: -log_view [211]PETSC ERROR: -prop_steps 25 [211]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 192 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarapplication called MPI_Abort(MPI_COMM_WORLD, 76) - process 211 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 213: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [170]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 103: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 117: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [213]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [213]PETSC ERROR: Error in external library [213]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [213]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [213]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [213]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [177]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [177]PETSC ERROR: Error in external library [177]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [177]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [177]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [177]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [213]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 34: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object [177]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [213]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 56: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[72]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [72]PETSC ERROR: Error in external library [72]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [72]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [213]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [213]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [213]PETSC ERROR: #4 main() line 136 in ex_ms.c [213]PETSC ERROR: PETSc Option Table entries: [213]PETSC ERROR: -log_view [213]PETSC ERROR: -prop_steps 25 [213]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 213 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [177]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [103]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [103]PETSC ERROR: Error in external library [103]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [103]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [103]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 137: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [117]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [117]PETSC ERROR: Error in external library [117]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [117]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [117]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [117]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [72]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [72]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 243: HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 160: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [72]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 236: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [160]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [160]PETSC ERROR: Error in external library [160]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [160]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset [160]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [160]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [72]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [72]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [103]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [243]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [243]PETSC ERROR: Error in external library [243]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [243]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [243]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [103]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[236]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [236]PETSC ERROR: Error in external library [236]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [236]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [236]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [236]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [34]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [34]PETSC ERROR: Error in external library [34]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [34]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [34]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [34]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [170]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [170]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [170]PETSC ERROR: #4 main() line 136 in ex_ms.c [170]PETSC ERROR: PETSc Option Table entries: [170]PETSC ERROR: -log_view [170]PETSC ERROR: -prop_steps 25 [170]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 170 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[56]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [56]PETSC ERROR: Error in external library [56]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [56]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [56]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [56]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [103]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [103]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [103]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [103]PETSC ERROR: #4 main() line 136 in ex_ms.c [103]PETSC ERROR: PETSc Option Table entries: [103]PETSC ERROR: -log_view [103]PETSC ERROR: -prop_steps 25 [34]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[117]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[236]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s[177]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [177]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [177]PETSC ERROR: #4 main() line 136 in ex_ms.c [177]PETSC ERROR: PETSc Option Table entries: [177]PETSC ERROR: -log_view [177]PETSC ERROR: -prop_steps 25 [177]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 177 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [34]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [34]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [137]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [137]PETSC ERROR: Error in external library [137]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [137]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [137]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [137]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [117]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [117]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [117]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [117]PETSC ERROR: #4 main() line 136 in ex_ms.c [117]PETSC ERROR: PETSc Option Table entries: [117]PETSC ERROR: -log_view [117]PETSC ERROR: -prop_steps 25 [56]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[72]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [72]PETSC ERROR: #4 main() line 136 in ex_ms.c [72]PETSC ERROR: PETSc Option Table entries: [72]PETSC ERROR: -log_view [72]PETSC ERROR: -prop_steps 25 [72]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 72 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-ssuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [236]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [56]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [56]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [56]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [56]PETSC ERROR: #4 main() line 136 in ex_ms.c [56]PETSC ERROR: PETSc Option Table entries: [56]PETSC ERROR: -log_view [56]PETSC ERROR: -prop_steps 25 [137]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[243]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [34]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [34]PETSC ERROR: #4 main() line 136 in ex_ms.c [34]PETSC ERROR: PETSc Option Table entries: [34]PETSC ERROR: -log_view [34]PETSC ERROR: -prop_steps 25 [34]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 34 [103]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 103 [243]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[56]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 56 [117]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 117 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 109: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset srun: Job step aborted: Waiting up to 32 seconds for job step to finish. minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [243]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [243]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [243]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [243]PETSC ERROR: #4 main() line 136 in ex_ms.c [243]PETSC ERROR: PETSc Option Table entries: [243]PETSC ERROR: -log_view [243]PETSC ERROR: -prop_steps 25 [236]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [236]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [236]PETSC ERROR: #4 main() line 136 in ex_ms.c [236]PETSC ERROR: PETSc Option Table entries: [236]PETSC ERROR: -log_view [236]PETSC ERROR: -prop_steps 25 [236]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 236 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [109]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [109]PETSC ERROR: Error in external library [109]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [109]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [109]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [109]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [243]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 243 [109]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 196: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 249: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [109]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [109]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object [109]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [109]PETSC ERROR: #4 main() line 136 in ex_ms.c [109]PETSC ERROR: PETSc Option Table entries: [109]PETSC ERROR: -log_view [109]PETSC ERROR: -prop_steps 25 [109]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 109 major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [196]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [196]PETSC ERROR: Error in external library HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 75: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 55: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [137]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 89: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 93: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 122: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [55]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [55]PETSC ERROR: Error in external library [55]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [55]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [55]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [55]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object [55]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [160]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset [55]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [55]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [55]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [55]PETSC ERROR: #4 main() line 136 in ex_ms.c [55]PETSC ERROR: PETSc Option Table entries: [55]PETSC ERROR: -log_view [55]PETSC ERROR: -prop_steps 25 [55]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 55 minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [122]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [122]PETSC ERROR: Error in external library [75]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [75]PETSC ERROR: Error in external library [75]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [75]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [75]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [75]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [75]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [75]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[89]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [89]PETSC ERROR: Error in external library [89]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [89]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [89]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [89]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [89]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [249]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [196]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [196]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [196]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [196]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [196]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 14: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [160]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [160]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [160]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [160]PETSC ERROR: #4 main() line 136 in ex_ms.c [160]PETSC ERROR: PETSc Option Table entries: [160]PETSC ERROR: -log_view [160]PETSC ERROR: -prop_steps 25 #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [14]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [14]PETSC ERROR: Error in external library [14]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [14]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [14]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [14]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [14]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [14]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [14]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [14]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [14]PETSC ERROR: #4 main() line 136 in ex_ms.c [14]PETSC ERROR: PETSc Option Table entries: [14]PETSC ERROR: -log_view [14]PETSC ERROR: -prop_steps 25 [14]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 14 slurmstepd: error: *** STEP 1284928.0 ON apsxrmd-0001 CANCELLED AT 2019-10-10T12:05:06 *** [137]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [137]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [137]PETSC ERROR: #4 main() line 136 in ex_ms.c [137]PETSC ERROR: PETSc Option Table entries: [137]PETSC ERROR: -log_view [137]PETSC ERROR: -prop_steps 25 [137]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 137 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 12: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 25: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object [160]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 160 major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [12]PETSC ERROR: Error in external library [12]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 17: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 18: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [18]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [18]PETSC ERROR: Error in external library [18]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [89]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [93]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [93]PETSC ERROR: Error in external library [93]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [93]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [93]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [93]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [93]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [25]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [25]PETSC ERROR: Error in external library [25]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [25]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [25]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [25]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 131: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 159: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [131]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [131]PETSC ERROR: Error in external library [131]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [131]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [159]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [159]PETSC ERROR: Error in external library [159]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [159]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [159]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [159]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 176: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header [131]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [131]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [131]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[25]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [131]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [131]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [131]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [131]PETSC ERROR: #4 main() line 136 in ex_ms.c [131]PETSC ERROR: PETSc Option Table entries: [159]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [196]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [196]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [249]PETSC ERROR: Error in external library [249]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [249]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [249]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [249]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[249]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [159]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [159]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [159]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [159]PETSC ERROR: #4 main() line 136 in ex_ms.c [159]PETSC ERROR: PETSc Option Table entries: [159]PETSC ERROR: -log_view [159]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [176]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [176]PETSC ERROR: Error in external library [176]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [176]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [176]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[176]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [176]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [249]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [249]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [196]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [196]PETSC ERROR: #4 main() line 136 in ex_ms.c [196]PETSC ERROR: PETSc Option Table entries: [196]PETSC ERROR: -log_view [196]PETSC ERROR: -prop_steps 25 [196]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 196 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 231: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[249]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [249]PETSC ERROR: #4 main() line 136 in ex_ms.c [249]PETSC ERROR: PETSc Option Table entries: [249]PETSC ERROR: -log_view [249]PETSC ERROR: -prop_steps 25 [249]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 249 [131]PETSC ERROR: -log_view [131]PETSC ERROR: -prop_steps 25 [131]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 131 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 254: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links [159]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 159 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [176]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [176]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [176]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [176]PETSC ERROR: #4 main() line 136 in ex_ms.c [176]PETSC ERROR: PETSc Option Table entries: [176]PETSC ERROR: -log_view [176]PETSC ERROR: -prop_steps 25 minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [93]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [176]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 176 [122]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [122]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [122]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [122]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 155: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset [122]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [231]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [231]PETSC ERROR: Error in external library HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 178: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[254]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [254]PETSC ERROR: Error in external library [254]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [254]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [254]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [254]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[231]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [231]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [231]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [231]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [122]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [122]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [231]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object [75]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [75]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [75]PETSC ERROR: #4 main() line 136 in ex_ms.c [75]PETSC ERROR: PETSc Option Table entries: [75]PETSC ERROR: -log_view [75]PETSC ERROR: -prop_steps 25 [75]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 75 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [89]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [89]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [89]PETSC ERROR: #4 main() line 136 in ex_ms.c [89]PETSC ERROR: PETSc Option Table entries: [89]PETSC ERROR: -log_view [89]PETSC ERROR: -prop_steps 25 [89]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 89 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [155]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [155]PETSC ERROR: Error in external library [155]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [155]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [155]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [155]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [93]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [93]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [93]PETSC ERROR: #4 main() line 136 in ex_ms.c [93]PETSC ERROR: PETSc Option Table entries: [93]PETSC ERROR: -log_view [93]PETSC ERROR: -prop_steps 25 [93]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 93 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [231]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [231]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [155]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[122]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [122]PETSC ERROR: #4 main() line 136 in ex_ms.c [122]PETSC ERROR: PETSc Option Table entries: [122]PETSC ERROR: -log_view [122]PETSC ERROR: -prop_steps 25 [122]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 122 [254]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 123: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [254]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [254]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [254]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [254]PETSC ERROR: #4 main() line 136 in ex_ms.c [254]PETSC ERROR: PETSc Option Table entries: [254]PETSC ERROR: -log_view [254]PETSC ERROR: -prop_steps 25 [178]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [178]PETSC ERROR: Error in external library [178]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [178]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [178]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [178]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [123]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [123]PETSC ERROR: Error in external library [123]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [123]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 227: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links [178]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[123]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [123]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [231]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [231]PETSC ERROR: #4 main() line 136 in ex_ms.c [231]PETSC ERROR: PETSc Option Table entries: [231]PETSC ERROR: -log_view [231]PETSC ERROR: -prop_steps 25 [231]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 231 [123]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[254]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 254 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [178]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [123]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [123]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 132: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 121: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 245: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 145: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [227]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [227]PETSC ERROR: Error in external library [227]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [227]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [227]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [227]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [123]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [123]PETSC ERROR: #4 main() line 136 in ex_ms.c [123]PETSC ERROR: PETSc Option Table entries: [123]PETSC ERROR: -log_view [123]PETSC ERROR: -prop_steps 25 [123]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 123 minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [155]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [155]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [155]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [155]PETSC ERROR: #4 main() line 136 in ex_ms.c [155]PETSC ERROR: PETSc Option Table entries: [155]PETSC ERROR: -log_view [155]PETSC ERROR: -prop_steps 25 [121]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [121]PETSC ERROR: Error in external library [121]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [121]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [121]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [121]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [227]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[155]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 155 [121]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[178]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [178]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [178]PETSC ERROR: #4 main() line 136 in ex_ms.c [178]PETSC ERROR: PETSc Option Table entries: [178]PETSC ERROR: -log_view [178]PETSC ERROR: -prop_steps 25 [178]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 178 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 186: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [227]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [227]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [227]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [227]PETSC ERROR: #4 main() line 136 in ex_ms.c [227]PETSC ERROR: PETSc Option Table entries: [227]PETSC ERROR: -log_view #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [121]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [245]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [245]PETSC ERROR: Error in external library [245]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [245]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [245]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [245]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset [121]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [121]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [121]PETSC ERROR: #4 main() line 136 in ex_ms.c [121]PETSC ERROR: PETSc Option Table entries: [121]PETSC ERROR: -log_view [121]PETSC ERROR: -prop_steps 25 [121]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 121 [245]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [132]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 80: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- minor: Unable to initialize object [145]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [145]PETSC ERROR: Error in external library [145]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [145]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [145]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [145]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 106: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [245]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [145]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [80]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 207: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [227]PETSC ERROR: -prop_steps 25 [227]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 227 [186]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [186]PETSC ERROR: Error in external library [186]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [186]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [186]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [186]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [80]PETSC ERROR: Error in external library [80]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [80]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [80]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [80]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [245]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [245]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [245]PETSC ERROR: #4 main() line 136 in ex_ms.c [245]PETSC ERROR: PETSc Option Table entries: [245]PETSC ERROR: -log_view [245]PETSC ERROR: -prop_steps 25 [245]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 245 [186]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[80]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s[207]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [207]PETSC ERROR: Error in external library superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [186]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [80]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [207]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [207]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [207]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [207]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [132]PETSC ERROR: Error in external library [132]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [132]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [132]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [132]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [106]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [106]PETSC ERROR: Error in external library [106]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [106]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [106]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [106]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [207]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[132]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[106]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [207]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [207]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [207]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [207]PETSC ERROR: #4 main() line 136 in ex_ms.c [207]PETSC ERROR: PETSc Option Table entries: [207]PETSC ERROR: -log_view superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [132]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [132]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [106]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [207]PETSC ERROR: -prop_steps 25 [207]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 207 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[80]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [80]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [80]PETSC ERROR: #4 main() line 136 in ex_ms.c [80]PETSC ERROR: PETSc Option Table entries: [80]PETSC ERROR: -log_view [80]PETSC ERROR: -prop_steps 25 [80]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 80 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 205: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [145]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [145]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [145]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [145]PETSC ERROR: #4 main() line 136 in ex_ms.c [145]PETSC ERROR: PETSc Option Table entries: [145]PETSC ERROR: -log_view [145]PETSC ERROR: -prop_steps 25 [106]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [106]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [106]PETSC ERROR: #4 main() line 136 in ex_ms.c [106]PETSC ERROR: PETSc Option Table entries: [106]PETSC ERROR: -log_view [106]PETSC ERROR: -prop_steps 25 [106]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 106 major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [145]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 145 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 95: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table [205]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [205]PETSC ERROR: Error in external library [205]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [205]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [205]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [205]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [186]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [186]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [186]PETSC ERROR: #4 main() line 136 in ex_ms.c [186]PETSC ERROR: PETSc Option Table entries: [186]PETSC ERROR: -log_view [186]PETSC ERROR: -prop_steps 25 [186]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 186 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 115: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed [205]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[132]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [132]PETSC ERROR: #4 main() line 136 in ex_ms.c [132]PETSC ERROR: PETSc Option Table entries: [132]PETSC ERROR: -log_view [132]PETSC ERROR: -prop_steps 25 [132]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 132 minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 141: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 164: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [95]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [95]PETSC ERROR: Error in external library [95]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [95]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [95]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [95]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [205]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [205]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [205]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [205]PETSC ERROR: #4 main() line 136 in ex_ms.c #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [115]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [115]PETSC ERROR: Error in external library [115]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [115]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [115]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [115]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 235: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [141]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [141]PETSC ERROR: Error in external library [115]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 238: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [141]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [164]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [164]PETSC ERROR: Error in external library [164]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [164]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [164]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [164]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[205]PETSC ERROR: PETSc Option Table entries: [205]PETSC ERROR: -log_view [205]PETSC ERROR: -prop_steps 25 [205]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 205 [164]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[95]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[238]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [238]PETSC ERROR: Error in external library [238]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [238]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [238]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [238]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[235]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [235]PETSC ERROR: Error in external library [235]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [235]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [235]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [164]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s[238]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[141]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [141]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [141]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [95]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [95]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [95]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [95]PETSC ERROR: #4 main() line 136 in ex_ms.c [95]PETSC ERROR: PETSc Option Table entries: [95]PETSC ERROR: -log_view [95]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[141]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[115]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [115]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [115]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [115]PETSC ERROR: #4 main() line 136 in ex_ms.c [115]PETSC ERROR: PETSc Option Table entries: [115]PETSC ERROR: -log_view [115]PETSC ERROR: -prop_steps 25 [115]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 115 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[95]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 95 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [238]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [238]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [238]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [238]PETSC ERROR: #4 main() line 136 in ex_ms.c [238]PETSC ERROR: PETSc Option Table entries: [238]PETSC ERROR: -log_view [238]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 79: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset [235]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [141]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [141]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [141]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 101: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object [235]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 148: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 111: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [148]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [148]PETSC ERROR: Error in external library [148]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [148]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 69: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[148]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [148]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [235]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [235]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [235]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [235]PETSC ERROR: #4 main() line 136 in ex_ms.c [235]PETSC ERROR: PETSc Option Table entries: [235]PETSC ERROR: -log_view [235]PETSC ERROR: -prop_steps 25 [148]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object [238]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 238 [164]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [164]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [164]PETSC ERROR: #4 main() line 136 in ex_ms.c [164]PETSC ERROR: PETSc Option Table entries: [164]PETSC ERROR: -log_view [164]PETSC ERROR: -prop_steps 25 [164]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 164 #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 216: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [141]PETSC ERROR: #4 main() line 136 in ex_ms.c [141]PETSC ERROR: PETSc Option Table entries: [141]PETSC ERROR: -log_view [141]PETSC ERROR: -prop_steps 25 [141]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 141 #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 142: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [101]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [101]PETSC ERROR: Error in external library HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 234: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [142]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [142]PETSC ERROR: Error in external library [142]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [142]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [234]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [234]PETSC ERROR: Error in external library [234]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [234]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [142]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [142]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [111]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [111]PETSC ERROR: Error in external library [111]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [111]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [111]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [111]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [234]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [234]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [142]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [69]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [69]PETSC ERROR: Error in external library [69]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [69]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [69]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [69]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [234]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[69]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[235]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 235 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[216]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [216]PETSC ERROR: Error in external library [216]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [216]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [216]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [216]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [148]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [148]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [148]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [148]PETSC ERROR: #4 main() line 136 in ex_ms.c [148]PETSC ERROR: PETSc Option Table entries: [148]PETSC ERROR: -log_view [148]PETSC ERROR: -prop_steps 25 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s[216]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[148]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 148 [79]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [79]PETSC ERROR: Error in external library [79]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [79]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [79]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [79]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[79]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/le/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaresuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [216]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [142]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [142]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [142]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [142]PETSC ERROR: #4 main() line 136 in ex_ms.c [142]PETSC ERROR: PETSc Option Table entries: [142]PETSC ERROR: -log_view [142]PETSC ERROR: -prop_steps 25 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[142]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 142 uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [79]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 149: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [101]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [101]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [101]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [101]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [234]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [234]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [234]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [234]PETSC ERROR: #4 main() line 136 in ex_ms.c [234]PETSC ERROR: PETSc Option Table entries: [234]PETSC ERROR: -log_view [234]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [149]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [149]PETSC ERROR: Error in external library [149]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [149]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [101]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[234]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 234 [149]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [149]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[216]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [216]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [216]PETSC ERROR: #4 main() line 136 in ex_ms.c [216]PETSC ERROR: PETSc Option Table entries: [216]PETSC ERROR: -log_view [216]PETSC ERROR: -prop_steps 25 [216]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 216 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 172: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 219: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [172]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [172]PETSC ERROR: Error in external library [172]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [172]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [101]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [101]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [219]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [219]PETSC ERROR: Error in external library [219]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [219]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [172]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [172]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [111]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[219]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [219]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 190: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[219]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [190]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [190]PETSC ERROR: Error in external library [190]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [190]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 221: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [190]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [190]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [111]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [111]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [111]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [111]PETSC ERROR: #4 main() line 136 in ex_ms.c [111]PETSC ERROR: PETSc Option Table entries: [111]PETSC ERROR: -log_view [111]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [221]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [221]PETSC ERROR: Error in external library [221]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [221]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [190]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 65: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links [221]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [221]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [149]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 67: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [221]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [67]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [67]PETSC ERROR: Error in external library [67]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [67]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 246: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[67]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [67]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [246]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [246]PETSC ERROR: Error in external library [246]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [246]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [149]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [149]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [149]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [149]PETSC ERROR: #4 main() line 136 in ex_ms.c [149]PETSC ERROR: PETSc Option Table entries: [149]PETSC ERROR: -log_view [149]PETSC ERROR: -prop_steps 25 [67]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[246]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [246]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 169: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [69]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [69]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [69]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [69]PETSC ERROR: #4 main() line 136 in ex_ms.c [69]PETSC ERROR: PETSc Option Table entries: [69]PETSC ERROR: -log_view [69]PETSC ERROR: -prop_steps 25 [246]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [169]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [169]PETSC ERROR: Error in external library [169]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [169]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [69]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 69 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 204: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [169]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [169]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [79]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [79]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [79]PETSC ERROR: #4 main() line 136 in ex_ms.c [79]PETSC ERROR: PETSc Option Table entries: [79]PETSC ERROR: -log_view [79]PETSC ERROR: -prop_steps 25 [79]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 79 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [204]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [204]PETSC ERROR: Error in external library [204]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [204]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [169]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 90: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [204]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [204]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [172]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [90]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [90]PETSC ERROR: Error in external library [90]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [90]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [204]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[90]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [90]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 206: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[90]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [206]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [206]PETSC ERROR: Error in external library [206]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [206]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [172]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [172]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [172]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [172]PETSC ERROR: #4 main() line 136 in ex_ms.c [172]PETSC ERROR: PETSc Option Table entries: [172]PETSC ERROR: -log_view [172]PETSC ERROR: -prop_steps 25 [101]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [101]PETSC ERROR: #4 main() line 136 in ex_ms.c [101]PETSC ERROR: PETSc Option Table entries: [101]PETSC ERROR: -log_view [101]PETSC ERROR: -prop_steps 25 [101]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 101 [206]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [206]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[111]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 111 [206]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [65]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [65]PETSC ERROR: Error in external library [65]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [65]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 209: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [190]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [190]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [190]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [190]PETSC ERROR: #4 main() line 136 in ex_ms.c [190]PETSC ERROR: PETSc Option Table entries: [190]PETSC ERROR: -log_view [190]PETSC ERROR: -prop_steps 25 [65]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [65]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [209]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [209]PETSC ERROR: Error in external library [209]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [209]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [190]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 190 [65]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[209]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [209]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 130: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[209]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [130]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [130]PETSC ERROR: Error in external library [130]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [130]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarelinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[130]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [130]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-se/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[149]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 149 uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [67]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [67]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [67]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [67]PETSC ERROR: #4 main() line 136 in ex_ms.c [67]PETSC ERROR: PETSc Option Table entries: [67]PETSC ERROR: -log_view [67]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [219]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [219]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [219]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [219]PETSC ERROR: #4 main() line 136 in ex_ms.c [219]PETSC ERROR: PETSc Option Table entries: [219]PETSC ERROR: -log_view [219]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 167: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [67]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 67 [219]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 219 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarelinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-se/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [90]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [90]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [90]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [90]PETSC ERROR: #4 main() line 136 in ex_ms.c [90]PETSC ERROR: PETSc Option Table entries: [90]PETSC ERROR: -log_view [90]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [221]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [221]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [221]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [221]PETSC ERROR: #4 main() line 136 in ex_ms.c [221]PETSC ERROR: PETSc Option Table entries: [221]PETSC ERROR: -log_view [221]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [169]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [169]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [169]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [169]PETSC ERROR: #4 main() line 136 in ex_ms.c [169]PETSC ERROR: PETSc Option Table entries: [169]PETSC ERROR: -log_view [169]PETSC ERROR: -prop_steps 25 [90]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 90 [221]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 221 [169]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 169 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 100: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[172]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 172 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [100]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [100]PETSC ERROR: Error in external library [100]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [100]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 173: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [100]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [100]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [246]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [246]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [246]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [246]PETSC ERROR: #4 main() line 136 in ex_ms.c [246]PETSC ERROR: PETSc Option Table entries: [246]PETSC ERROR: -log_view [246]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [173]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [173]PETSC ERROR: Error in external library [173]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [173]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [100]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[246]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 246 [173]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [173]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 110: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 248: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [173]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [110]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [110]PETSC ERROR: Error in external library [110]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [110]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [248]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [248]PETSC ERROR: Error in external library [248]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [248]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 129: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [110]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [110]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [248]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [248]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [129]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [129]PETSC ERROR: Error in external library [129]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [129]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [110]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[248]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[129]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [129]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 119: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 252: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [130]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [119]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [119]PETSC ERROR: Error in external library [119]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [119]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [252]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [252]PETSC ERROR: Error in external library [252]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [252]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[119]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [119]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [252]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [252]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[119]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[252]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [130]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [130]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [130]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [130]PETSC ERROR: #4 main() line 136 in ex_ms.c [130]PETSC ERROR: PETSc Option Table entries: [130]PETSC ERROR: -log_view [130]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 125: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 197: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 134: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [125]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [125]PETSC ERROR: Error in external library [125]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [125]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [197]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [197]PETSC ERROR: Error in external library [197]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [197]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [134]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [134]PETSC ERROR: Error in external library [134]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [134]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [125]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [125]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 [197]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [197]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [134]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [134]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [125]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[197]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[134]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-sHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 198: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s[167]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [167]PETSC ERROR: Error in external library [167]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [167]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [167]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [167]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [65]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [65]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [65]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [65]PETSC ERROR: #4 main() line 136 in ex_ms.c [65]PETSC ERROR: PETSc Option Table entries: [65]PETSC ERROR: -log_view [65]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [198]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [198]PETSC ERROR: Error in external library [198]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [198]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [167]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[65]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 65 [198]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [198]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 71: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [198]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [71]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [71]PETSC ERROR: Error in external library [71]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [71]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 199: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [167]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [71]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [71]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [199]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [199]PETSC ERROR: Error in external library [199]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [199]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[71]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[199]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [199]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 74: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [199]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [173]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [173]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [173]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [173]PETSC ERROR: #4 main() line 136 in ex_ms.c [173]PETSC ERROR: PETSc Option Table entries: [173]PETSC ERROR: -log_view [173]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [74]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [74]PETSC ERROR: Error in external library [74]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [74]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 202: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [173]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 173 [74]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [74]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [202]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [202]PETSC ERROR: Error in external library [202]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [202]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 185: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [74]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[202]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [202]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [185]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [185]PETSC ERROR: Error in external library [185]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [185]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 77: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [202]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[185]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [185]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [77]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [77]PETSC ERROR: Error in external library [77]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [77]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[185]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[77]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [77]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[129]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[77]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [204]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [204]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [204]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [204]PETSC ERROR: #4 main() line 136 in ex_ms.c [204]PETSC ERROR: PETSc Option Table entries: [204]PETSC ERROR: -log_view [204]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 81: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [204]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 204 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [81]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [81]PETSC ERROR: Error in external library [81]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [81]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [129]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [129]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [129]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [129]PETSC ERROR: #4 main() line 136 in ex_ms.c [129]PETSC ERROR: PETSc Option Table entries: [129]PETSC ERROR: -log_view [129]PETSC ERROR: -prop_steps 25 [81]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [81]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[130]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 130 [81]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [206]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [206]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [206]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [206]PETSC ERROR: #4 main() line 136 in ex_ms.c [206]PETSC ERROR: PETSc Option Table entries: [206]PETSC ERROR: -log_view [206]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 83: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [206]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 206 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [83]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [83]PETSC ERROR: Error in external library [83]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [83]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 208: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [134]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [134]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [134]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [134]PETSC ERROR: #4 main() line 136 in ex_ms.c [134]PETSC ERROR: PETSc Option Table entries: [134]PETSC ERROR: -log_view [134]PETSC ERROR: -prop_steps 25 [83]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [83]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [208]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [208]PETSC ERROR: Error in external library [208]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [208]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [134]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 134 [83]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[208]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [208]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 139: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 84: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [208]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [139]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [139]PETSC ERROR: Error in external library [139]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [139]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [84]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [84]PETSC ERROR: Error in external library [84]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [84]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[139]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [139]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [84]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [84]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[139]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[84]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [209]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [209]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [209]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [209]PETSC ERROR: #4 main() line 136 in ex_ms.c [209]PETSC ERROR: PETSc Option Table entries: [209]PETSC ERROR: -log_view [209]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 140: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 86: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [209]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 209 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [140]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [140]PETSC ERROR: Error in external library [140]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [140]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [86]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [86]PETSC ERROR: Error in external library [86]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [86]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 214: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [140]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [140]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [86]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [86]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [214]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [214]PETSC ERROR: Error in external library [214]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [214]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [140]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[86]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[214]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [214]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 158: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 88: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [214]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [158]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [158]PETSC ERROR: Error in external library [158]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [158]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [88]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [88]PETSC ERROR: Error in external library [88]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [88]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 215: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [158]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [158]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [88]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [88]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [215]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [215]PETSC ERROR: Error in external library [215]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [215]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [158]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[88]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[215]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [215]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [167]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [167]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [167]PETSC ERROR: #4 main() line 136 in ex_ms.c [167]PETSC ERROR: PETSc Option Table entries: [167]PETSC ERROR: -log_view [167]PETSC ERROR: -prop_steps 25 [167]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 167 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 91: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [215]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 179: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [91]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [91]PETSC ERROR: Error in external library [91]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [91]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 217: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [179]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [179]PETSC ERROR: Error in external library [179]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [179]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [91]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [91]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [217]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [217]PETSC ERROR: Error in external library [217]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [217]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [179]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [179]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 [91]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[217]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [217]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [179]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 92: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [217]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [92]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [92]PETSC ERROR: Error in external library [92]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [92]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 218: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[92]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [92]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [218]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [218]PETSC ERROR: Error in external library [218]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [218]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [185]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [185]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [185]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [185]PETSC ERROR: #4 main() line 136 in ex_ms.c [185]PETSC ERROR: PETSc Option Table entries: [185]PETSC ERROR: -log_view [185]PETSC ERROR: -prop_steps 25 [92]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[218]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [218]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [185]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 185 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[218]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[129]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 129 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 222: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [100]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [100]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [100]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [100]PETSC ERROR: #4 main() line 136 in ex_ms.c [100]PETSC ERROR: PETSc Option Table entries: [100]PETSC ERROR: -log_view [100]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [222]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [222]PETSC ERROR: Error in external library [222]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [222]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[100]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 100 [222]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [222]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [139]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [139]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [139]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [139]PETSC ERROR: #4 main() line 136 in ex_ms.c [139]PETSC ERROR: PETSc Option Table entries: [139]PETSC ERROR: -log_view [139]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 107: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [222]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[139]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 139 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [107]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [107]PETSC ERROR: Error in external library [107]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [107]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 223: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[107]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [107]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [223]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [223]PETSC ERROR: Error in external library [223]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [223]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[107]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[223]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [223]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [140]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [140]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [140]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [140]PETSC ERROR: #4 main() line 136 in ex_ms.c [140]PETSC ERROR: PETSc Option Table entries: [140]PETSC ERROR: -log_view [140]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[223]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[140]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 140 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 224: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 153: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [110]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [110]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [110]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [110]PETSC ERROR: #4 main() line 136 in ex_ms.c [110]PETSC ERROR: PETSc Option Table entries: [110]PETSC ERROR: -log_view [110]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [224]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [224]PETSC ERROR: Error in external library [224]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [224]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [12]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [153]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [153]PETSC ERROR: Error in external library [153]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [153]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [110]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 110 [224]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [224]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [153]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [153]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 112: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [224]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[153]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [112]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [112]PETSC ERROR: Error in external library [112]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [112]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 226: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [12]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/llinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[112]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [112]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [226]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [226]PETSC ERROR: Error in external library [226]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [226]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[112]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[226]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [226]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaresuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [158]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [158]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [158]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [158]PETSC ERROR: #4 main() line 136 in ex_ms.c [158]PETSC ERROR: PETSc Option Table entries: [158]PETSC ERROR: -log_view [158]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 118: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [226]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s[158]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 158 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [118]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [118]PETSC ERROR: Error in external library [118]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [118]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 228: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [12]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [12]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [12]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 166: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [118]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [118]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [228]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [228]PETSC ERROR: Error in external library [228]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [228]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [17]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [17]PETSC ERROR: Error in external library [17]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [17]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [17]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [17]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [166]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [166]PETSC ERROR: Error in external library [166]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [166]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [118]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[228]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [228]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [17]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[166]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [166]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[228]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[166]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 229: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [119]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [119]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [119]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [119]PETSC ERROR: #4 main() line 136 in ex_ms.c [119]PETSC ERROR: PETSc Option Table entries: [119]PETSC ERROR: -log_view [119]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [229]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [229]PETSC ERROR: Error in external library [229]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [229]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [17]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[119]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 119 [229]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [229]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [18]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [18]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [18]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [179]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [179]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [179]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [179]PETSC ERROR: #4 main() line 136 in ex_ms.c [179]PETSC ERROR: PETSc Option Table entries: [179]PETSC ERROR: -log_view [179]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[229]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[18]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[179]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 179 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 230: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 183: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [125]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [125]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [125]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [125]PETSC ERROR: #4 main() line 136 in ex_ms.c [125]PETSC ERROR: PETSc Option Table entries: [125]PETSC ERROR: -log_view [125]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [230]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [230]PETSC ERROR: Error in external library [230]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [230]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [183]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [183]PETSC ERROR: Error in external library [183]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [183]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [125]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 125 [230]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [230]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [18]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [18]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [18]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [183]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [183]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 127: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [230]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [25]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [25]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [25]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [25]PETSC ERROR: #4 main() line 136 in ex_ms.c [25]PETSC ERROR: PETSc Option Table entries: [25]PETSC ERROR: -log_view [25]PETSC ERROR: -prop_steps 25 [183]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [127]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [127]PETSC ERROR: Error in external library [127]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [127]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 232: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [25]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 189: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [127]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [127]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [232]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [232]PETSC ERROR: Error in external library [232]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [232]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: #4 main() line 136 in ex_ms.c [12]PETSC ERROR: PETSc Option Table entries: [12]PETSC ERROR: -log_view [12]PETSC ERROR: -prop_steps 25 [12]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 12 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [189]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [189]PETSC ERROR: Error in external library [189]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [189]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [127]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[232]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [232]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [17]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [17]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [17]PETSC ERROR: #4 main() line 136 in ex_ms.c [17]PETSC ERROR: PETSc Option Table entries: [17]PETSC ERROR: -log_view [17]PETSC ERROR: -prop_steps 25 [17]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 17 [189]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [189]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 64: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [232]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[18]PETSC ERROR: #4 main() line 136 in ex_ms.c [18]PETSC ERROR: PETSc Option Table entries: [18]PETSC ERROR: -log_view [18]PETSC ERROR: -prop_steps 25 [18]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 18 [189]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [64]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [64]PETSC ERROR: Error in external library [64]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [64]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 233: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 31: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 128: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [64]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [64]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [233]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [233]PETSC ERROR: Error in external library [233]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [233]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [31]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [31]PETSC ERROR: Error in external library [31]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [31]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [128]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [128]PETSC ERROR: Error in external library [128]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [128]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [64]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[233]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [233]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [31]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [31]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [128]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [128]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 66: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [233]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[31]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[128]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [66]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [66]PETSC ERROR: Error in external library [66]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [66]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 237: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 133: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [66]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [66]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [237]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [237]PETSC ERROR: Error in external library [237]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [237]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [133]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [133]PETSC ERROR: Error in external library [133]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [133]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [66]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[237]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [237]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [31]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [31]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [31]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [31]PETSC ERROR: #4 main() line 136 in ex_ms.c [31]PETSC ERROR: PETSc Option Table entries: [31]PETSC ERROR: -log_view [31]PETSC ERROR: -prop_steps 25 [133]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [133]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 68: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [237]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[31]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 31 [133]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [68]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [68]PETSC ERROR: Error in external library [68]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [68]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 239: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 24: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 135: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [68]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [68]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [239]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [239]PETSC ERROR: Error in external library [239]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [239]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [135]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [135]PETSC ERROR: Error in external library [135]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [135]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [68]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[239]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [239]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 27: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [135]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [135]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 70: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [239]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information [135]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [70]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [70]PETSC ERROR: Error in external library [70]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [70]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 240: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [24]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 136: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [70]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [70]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [240]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [240]PETSC ERROR: Error in external library [240]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [240]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [27]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [27]PETSC ERROR: Error in external library #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [136]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [136]PETSC ERROR: Error in external library [136]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [136]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [70]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[240]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [240]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [24]PETSC ERROR: Error in external library [24]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [24]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [24]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [136]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [136]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[240]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[24]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[136]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-sHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 241: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 138: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [71]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [71]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [71]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [71]PETSC ERROR: #4 main() line 136 in ex_ms.c [71]PETSC ERROR: PETSc Option Table entries: [71]PETSC ERROR: -log_view [71]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [241]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [241]PETSC ERROR: Error in external library [241]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [241]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [138]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [138]PETSC ERROR: Error in external library [138]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [138]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [71]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 71 [241]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [241]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [24]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [24]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [138]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [138]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 73: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [241]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[27]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [27]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [27]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [27]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [138]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [73]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [73]PETSC ERROR: Error in external library [73]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [73]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 242: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [27]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 143: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [73]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [73]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [242]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [242]PETSC ERROR: Error in external library [242]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [242]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [143]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [143]PETSC ERROR: Error in external library [143]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [143]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [73]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[242]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [242]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s[143]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [143]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[242]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [27]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [27]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [143]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-sHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 244: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 5: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 144: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [74]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [74]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [74]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [74]PETSC ERROR: #4 main() line 136 in ex_ms.c [74]PETSC ERROR: PETSc Option Table entries: [74]PETSC ERROR: -log_view [74]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [244]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [244]PETSC ERROR: Error in external library [244]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [244]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [24]PETSC ERROR: #4 main() line 136 in ex_ms.c [24]PETSC ERROR: PETSc Option Table entries: [24]PETSC ERROR: -log_view [24]PETSC ERROR: -prop_steps 25 [24]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 24 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [144]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [144]PETSC ERROR: Error in external library [144]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [144]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [74]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 74 [244]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [244]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [27]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [27]PETSC ERROR: #4 main() line 136 in ex_ms.c [27]PETSC ERROR: PETSc Option Table entries: [27]PETSC ERROR: -log_view [27]PETSC ERROR: -prop_steps 25 [27]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 27 [144]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [144]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 76: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [244]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 32: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [144]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [76]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [76]PETSC ERROR: Error in external library [76]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [76]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 247: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [32]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [32]PETSC ERROR: Error in external library [32]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [32]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 146: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [76]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [76]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [247]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [247]PETSC ERROR: Error in external library [247]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [247]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [146]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [146]PETSC ERROR: Error in external library [146]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [146]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [76]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[247]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [247]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [32]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [32]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [146]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [146]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[247]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[146]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 147: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [77]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [77]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [77]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [77]PETSC ERROR: #4 main() line 136 in ex_ms.c [77]PETSC ERROR: PETSc Option Table entries: [77]PETSC ERROR: -log_view [77]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [147]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [147]PETSC ERROR: Error in external library [147]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [147]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [77]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 77 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [248]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [248]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [248]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [248]PETSC ERROR: #4 main() line 136 in ex_ms.c [248]PETSC ERROR: PETSc Option Table entries: [248]PETSC ERROR: -log_view [248]PETSC ERROR: -prop_steps 25 [147]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [147]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 78: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [248]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 248 [147]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [78]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [78]PETSC ERROR: Error in external library [78]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [78]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 250: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [5]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [5]PETSC ERROR: Error in external library [5]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [5]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [5]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [5]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 150: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [78]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [78]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [250]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [250]PETSC ERROR: Error in external library [250]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [250]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [5]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [150]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [150]PETSC ERROR: Error in external library [150]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [150]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [78]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[250]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [250]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/[150]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [150]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[250]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[32]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[150]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-sHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 251: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 151: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [81]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [81]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [81]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [81]PETSC ERROR: #4 main() line 136 in ex_ms.c [81]PETSC ERROR: PETSc Option Table entries: [81]PETSC ERROR: -log_view [81]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [251]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [251]PETSC ERROR: Error in external library [251]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [251]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [151]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [151]PETSC ERROR: Error in external library [151]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [151]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [81]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 81 [251]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [251]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [151]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [151]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 82: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [251]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[151]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [82]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [82]PETSC ERROR: Error in external library [82]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [82]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [32]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [32]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [32]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [32]PETSC ERROR: #4 main() line 136 in ex_ms.c [32]PETSC ERROR: PETSc Option Table entries: [32]PETSC ERROR: -log_view [32]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 152: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [82]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [82]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-su #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [152]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [152]PETSC ERROR: Error in external library [152]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [152]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [82]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [252]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [252]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [252]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [252]PETSC ERROR: #4 main() line 136 in ex_ms.c [252]PETSC ERROR: PETSc Option Table entries: [252]PETSC ERROR: -log_view [252]PETSC ERROR: -prop_steps 25 perlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [5]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [5]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [5]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [5]PETSC ERROR: #4 main() line 136 in ex_ms.c [5]PETSC ERROR: PETSc Option Table entries: [5]PETSC ERROR: -log_view [5]PETSC ERROR: -prop_steps 25 [5]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- [152]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [152]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[252]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 252 application called MPI_Abort(MPI_COMM_WORLD, 76) - process 5 [152]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-sHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 253: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 7: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [83]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [83]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [83]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [83]PETSC ERROR: #4 main() line 136 in ex_ms.c [83]PETSC ERROR: PETSc Option Table entries: [83]PETSC ERROR: -log_view [83]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [253]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [253]PETSC ERROR: Error in external library [253]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [253]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [7]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [7]PETSC ERROR: Error in external library [7]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [7]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[83]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 83 [253]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [253]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [7]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [7]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [153]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [153]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [153]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [153]PETSC ERROR: #4 main() line 136 in ex_ms.c [153]PETSC ERROR: PETSc Option Table entries: [153]PETSC ERROR: -log_view [153]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[253]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[7]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li[153]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 153 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-sHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 255: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 8: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 154: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [84]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [84]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [84]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [84]PETSC ERROR: #4 main() line 136 in ex_ms.c [84]PETSC ERROR: PETSc Option Table entries: [84]PETSC ERROR: -log_view [84]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [255]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [255]PETSC ERROR: Error in external library [255]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [255]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [8]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [8]PETSC ERROR: Error in external library [8]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [8]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [154]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [154]PETSC ERROR: Error in external library [154]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [154]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [84]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 84 [255]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [255]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [8]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [8]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [154]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [154]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 85: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [255]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[8]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li[154]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [85]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [85]PETSC ERROR: Error in external library [85]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [85]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 193: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [32]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 32 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 156: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [85]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [85]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [193]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [193]PETSC ERROR: Error in external library [193]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [193]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 2: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [156]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [156]PETSC ERROR: Error in external library [156]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [156]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [85]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[193]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [193]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 3: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [156]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [156]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[193]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes [156]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-sHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 194: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 157: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [86]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [86]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [86]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [86]PETSC ERROR: #4 main() line 136 in ex_ms.c [86]PETSC ERROR: PETSc Option Table entries: [86]PETSC ERROR: -log_view [86]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [194]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [194]PETSC ERROR: Error in external library [194]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [194]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-su #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [157]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [157]PETSC ERROR: Error in external library [157]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [157]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [86]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 86 [194]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [194]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 perlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [7]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [7]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [7]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [7]PETSC ERROR: #4 main() line 136 in ex_ms.c [7]PETSC ERROR: PETSc Option Table entries: [7]PETSC ERROR: -log_view [7]PETSC ERROR: -prop_steps 25 [7]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- [157]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [157]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 87: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [194]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[157]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [87]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [87]PETSC ERROR: Error in external library [87]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [87]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 195: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object application called MPI_Abort(MPI_COMM_WORLD, 76) - process 7 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 161: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [87]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [87]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [195]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [195]PETSC ERROR: Error in external library [195]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [195]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [161]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [161]PETSC ERROR: Error in external library [161]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [161]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [87]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[195]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [195]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-su[161]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [161]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[195]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/perlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [8]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [8]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [8]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [8]PETSC ERROR: #4 main() line 136 in ex_ms.c [8]PETSC ERROR: PETSc Option Table entries: [8]PETSC ERROR: -log_view [8]PETSC ERROR: -prop_steps 25 [8]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- [161]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarapplication called MPI_Abort(MPI_COMM_WORLD, 76) - process 8 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 162: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [88]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [88]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [88]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [88]PETSC ERROR: #4 main() line 136 in ex_ms.c [88]PETSC ERROR: PETSc Option Table entries: [88]PETSC ERROR: -log_view [88]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [162]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [162]PETSC ERROR: Error in external library [162]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [162]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [88]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 88 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [197]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [197]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [197]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [197]PETSC ERROR: #4 main() line 136 in ex_ms.c [197]PETSC ERROR: PETSc Option Table entries: [197]PETSC ERROR: -log_view [197]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 16: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [162]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [162]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[197]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 197 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [16]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [16]PETSC ERROR: Error in external library [16]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [16]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [162]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[16]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [16]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 163: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [91]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [91]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [91]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [91]PETSC ERROR: #4 main() line 136 in ex_ms.c [91]PETSC ERROR: PETSc Option Table entries: [91]PETSC ERROR: -log_view [91]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[16]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [163]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [163]PETSC ERROR: Error in external library [163]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [163]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [91]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 91 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [198]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [198]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [198]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [198]PETSC ERROR: #4 main() line 136 in ex_ms.c [198]PETSC ERROR: PETSc Option Table entries: [198]PETSC ERROR: -log_view [198]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 22: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [163]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [163]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[198]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 198 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [22]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [22]PETSC ERROR: Error in external library [22]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [22]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [163]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[22]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [22]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 165: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [92]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [92]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [92]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [92]PETSC ERROR: #4 main() line 136 in ex_ms.c [92]PETSC ERROR: PETSc Option Table entries: [92]PETSC ERROR: -log_view [92]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[22]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [165]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [165]PETSC ERROR: Error in external library [165]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [165]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [92]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 92 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [199]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [199]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [199]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [199]PETSC ERROR: #4 main() line 136 in ex_ms.c [199]PETSC ERROR: PETSc Option Table entries: [199]PETSC ERROR: -log_view [199]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 1: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [165]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [165]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 94: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [199]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 199 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [1]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [1]PETSC ERROR: Error in external library [1]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [1]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [165]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [94]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [94]PETSC ERROR: Error in external library [94]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [94]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 200: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [1]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [1]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[94]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [94]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [200]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [200]PETSC ERROR: Error in external library [200]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [200]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [1]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lie/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[94]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[200]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [200]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [2]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [2]PETSC ERROR: Error in external library superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [166]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [166]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [166]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [166]PETSC ERROR: #4 main() line 136 in ex_ms.c [166]PETSC ERROR: PETSc Option Table entries: [166]PETSC ERROR: -log_view [166]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 96: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [200]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[2]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [2]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [2]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [2]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [166]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 166 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [96]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [96]PETSC ERROR: Error in external library [96]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [96]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 201: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [2]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/liHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 168: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [96]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [96]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [201]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [201]PETSC ERROR: Error in external library [201]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [201]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [168]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [168]PETSC ERROR: Error in external library [168]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [168]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [96]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[201]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [201]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [3]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [3]PETSC ERROR: Error in external library [3]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [3]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [3]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [3]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [168]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [168]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 97: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [201]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[3]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li[168]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [97]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [97]PETSC ERROR: Error in external library [97]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [97]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarnux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 171: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [97]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [97]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-su #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [171]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [171]PETSC ERROR: Error in external library [171]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [171]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [97]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [202]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [202]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [202]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [202]PETSC ERROR: #4 main() line 136 in ex_ms.c [202]PETSC ERROR: PETSc Option Table entries: [202]PETSC ERROR: -log_view [202]PETSC ERROR: -prop_steps 25 perlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [171]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [171]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 98: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [202]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 202 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 11: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [171]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [98]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [98]PETSC ERROR: Error in external library [98]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [98]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 203: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 174: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [98]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [98]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [203]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [203]PETSC ERROR: Error in external library [203]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [203]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [11]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [11]PETSC ERROR: Error in external library [11]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [11]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [174]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [174]PETSC ERROR: Error in external library [174]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [174]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [98]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[203]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [203]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [174]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [174]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 99: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [203]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[11]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [11]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [174]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [99]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [99]PETSC ERROR: Error in external library [99]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [99]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[11]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 175: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [99]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [99]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [175]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [175]PETSC ERROR: Error in external library [175]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [175]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [99]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [208]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [208]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [208]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [208]PETSC ERROR: #4 main() line 136 in ex_ms.c [208]PETSC ERROR: PETSc Option Table entries: [208]PETSC ERROR: -log_view [208]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[175]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [175]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 102: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [208]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 208 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s[175]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [102]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [102]PETSC ERROR: Error in external library [102]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [102]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 210: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [16]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [16]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [16]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [16]PETSC ERROR: #4 main() line 136 in ex_ms.c [16]PETSC ERROR: PETSc Option Table entries: [16]PETSC ERROR: -log_view [16]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 180: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [102]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [102]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [210]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [210]PETSC ERROR: Error in external library [210]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [210]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [16]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 16 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [180]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [180]PETSC ERROR: Error in external library [180]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [180]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [102]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[210]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [210]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [180]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [180]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 104: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [210]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[180]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [104]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [104]PETSC ERROR: Error in external library [104]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [104]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 212: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 181: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [104]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [104]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [212]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [212]PETSC ERROR: Error in external library [212]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [212]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [181]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [181]PETSC ERROR: Error in external library [181]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [181]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [104]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[212]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [212]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-s[181]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [181]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 105: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [212]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/uperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [22]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [22]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [22]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [22]PETSC ERROR: #4 main() line 136 in ex_ms.c [22]PETSC ERROR: PETSc Option Table entries: [22]PETSC ERROR: -log_view [22]PETSC ERROR: -prop_steps 25 [181]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [105]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [105]PETSC ERROR: Error in external library [105]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [105]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[22]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 22 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 182: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [105]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [105]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 26: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [182]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [182]PETSC ERROR: Error in external library [182]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [182]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [105]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [214]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [214]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [214]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [214]PETSC ERROR: #4 main() line 136 in ex_ms.c [214]PETSC ERROR: PETSc Option Table entries: [214]PETSC ERROR: -log_view [214]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [26]PETSC ERROR: Error in external library [26]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [26]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [182]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [182]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[214]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 214 [26]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [26]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [182]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[26]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/llinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [107]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [107]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [107]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [107]PETSC ERROR: #4 main() line 136 in ex_ms.c [107]PETSC ERROR: PETSc Option Table entries: [107]PETSC ERROR: -log_view [107]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[107]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 107 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [215]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [215]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [215]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [215]PETSC ERROR: #4 main() line 136 in ex_ms.c [215]PETSC ERROR: PETSc Option Table entries: [215]PETSC ERROR: -log_view [215]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 36: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [183]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [183]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [183]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [183]PETSC ERROR: #4 main() line 136 in ex_ms.c [183]PETSC ERROR: PETSc Option Table entries: [183]PETSC ERROR: -log_view [183]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 108: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [215]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 215 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [36]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [36]PETSC ERROR: Error in external library [36]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [36]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [183]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 183 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [108]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [108]PETSC ERROR: Error in external library [108]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [108]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[36]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [36]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 184: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [108]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [108]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[36]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [184]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [184]PETSC ERROR: Error in external library [184]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [184]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [108]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [217]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [217]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [217]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [217]PETSC ERROR: #4 main() line 136 in ex_ms.c [217]PETSC ERROR: PETSc Option Table entries: [217]PETSC ERROR: -log_view [217]PETSC ERROR: -prop_steps 25 [184]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [184]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[217]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 217 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 39: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [184]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 187: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [112]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [112]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [112]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [112]PETSC ERROR: #4 main() line 136 in ex_ms.c [112]PETSC ERROR: PETSc Option Table entries: [112]PETSC ERROR: -log_view [112]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with- #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [187]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [187]PETSC ERROR: Error in external library [187]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [187]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [112]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 112 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [218]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [218]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [218]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [218]PETSC ERROR: #4 main() line 136 in ex_ms.c [218]PETSC ERROR: PETSc Option Table entries: [218]PETSC ERROR: -log_view [218]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [39]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [39]PETSC ERROR: Error in external library [39]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [39]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [187]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [187]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 113: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [218]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 218 [187]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [113]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [113]PETSC ERROR: Error in external library [113]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [113]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 220: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [39]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [39]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 188: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [113]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [113]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [220]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [220]PETSC ERROR: Error in external library [220]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [220]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [188]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [188]PETSC ERROR: Error in external library [188]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [188]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [113]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[220]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [220]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 [39]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[188]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [188]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 114: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [220]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 52: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [188]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [114]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [114]PETSC ERROR: Error in external library [114]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [114]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [52]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [52]PETSC ERROR: Error in external library [52]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [52]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[114]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [114]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[52]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [52]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[114]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [222]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [222]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [222]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [222]PETSC ERROR: #4 main() line 136 in ex_ms.c [222]PETSC ERROR: PETSc Option Table entries: [222]PETSC ERROR: -log_view [222]PETSC ERROR: -prop_steps 25 [52]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [189]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [189]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [189]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [189]PETSC ERROR: #4 main() line 136 in ex_ms.c [189]PETSC ERROR: PETSc Option Table entries: [189]PETSC ERROR: -log_view [189]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 116: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [222]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 222 [189]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 189 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [116]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [116]PETSC ERROR: Error in external library [116]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [116]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 191: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [116]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [116]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 54: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [191]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [191]PETSC ERROR: Error in external library [191]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [191]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [116]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [223]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [223]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [223]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [223]PETSC ERROR: #4 main() line 136 in ex_ms.c [223]PETSC ERROR: PETSc Option Table entries: [223]PETSC ERROR: -log_view [223]PETSC ERROR: -prop_steps 25 [191]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [191]PETSC ERROR: ./ex_ms on a named apsxrmd-0003 by sajid Thu Oct 10 12:03:55 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[223]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 223 [191]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [54]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [54]PETSC ERROR: Error in external library [54]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [54]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [118]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [118]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [118]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [118]PETSC ERROR: #4 main() line 136 in ex_ms.c [118]PETSC ERROR: PETSc Option Table entries: [118]PETSC ERROR: -log_view [118]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[54]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [54]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[118]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 118 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [224]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [224]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [224]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [224]PETSC ERROR: #4 main() line 136 in ex_ms.c [224]PETSC ERROR: PETSc Option Table entries: [224]PETSC ERROR: -log_view [224]PETSC ERROR: -prop_steps 25 [54]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [128]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [128]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [128]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [128]PETSC ERROR: #4 main() line 136 in ex_ms.c [128]PETSC ERROR: PETSc Option Table entries: [128]PETSC ERROR: -log_view [128]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 120: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [224]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 224 [128]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 128 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [120]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [120]PETSC ERROR: Error in external library [120]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [120]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 225: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[120]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [120]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [225]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [225]PETSC ERROR: Error in external library [225]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [225]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 62: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[120]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[225]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [225]PETSC ERROR: ./ex_ms on a named apsxrmd-0004 by sajid Thu Oct 10 12:03:55 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [62]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [62]PETSC ERROR: Error in external library [62]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [62]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [133]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [133]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [133]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [133]PETSC ERROR: #4 main() line 136 in ex_ms.c [133]PETSC ERROR: PETSc Option Table entries: [133]PETSC ERROR: -log_view [133]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 124: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [225]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[62]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [62]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [133]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 133 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [124]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [124]PETSC ERROR: Error in external library [124]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [124]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[124]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [124]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[62]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/le/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[124]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [226]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [226]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [226]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [226]PETSC ERROR: #4 main() line 136 in ex_ms.c [226]PETSC ERROR: PETSc Option Table entries: [226]PETSC ERROR: -log_view [226]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 0: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [135]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [135]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [135]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [135]PETSC ERROR: #4 main() line 136 in ex_ms.c [135]PETSC ERROR: PETSc Option Table entries: [135]PETSC ERROR: -log_view [135]PETSC ERROR: -prop_steps 25 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 126: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [226]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 226 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Error in external library [0]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [0]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [135]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 135 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [126]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [126]PETSC ERROR: Error in external library [126]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [126]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[0]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [0]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[126]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [126]PETSC ERROR: ./ex_ms on a named apsxrmd-0002 by sajid Thu Oct 10 12:03:55 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[0]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lie/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[126]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [228]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [228]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [228]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [228]PETSC ERROR: #4 main() line 136 in ex_ms.c [228]PETSC ERROR: PETSc Option Table entries: [228]PETSC ERROR: -log_view [228]PETSC ERROR: -prop_steps 25 nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [136]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [136]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [136]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [136]PETSC ERROR: #4 main() line 136 in ex_ms.c [136]PETSC ERROR: PETSc Option Table entries: [136]PETSC ERROR: -log_view [136]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[228]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 228 spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-su[136]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 136 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [1]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [1]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [1]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [1]PETSC ERROR: #4 main() line 136 in ex_ms.c [1]PETSC ERROR: PETSc Option Table entries: [1]PETSC ERROR: -log_view [1]PETSC ERROR: -prop_steps 25 [1]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [127]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [127]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [127]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [127]PETSC ERROR: #4 main() line 136 in ex_ms.c [127]PETSC ERROR: PETSc Option Table entries: [127]PETSC ERROR: -log_view [127]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[127]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 127 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [229]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [229]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [229]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [229]PETSC ERROR: #4 main() line 136 in ex_ms.c [229]PETSC ERROR: PETSc Option Table entries: [229]PETSC ERROR: -log_view [229]PETSC ERROR: -prop_steps 25 application called MPI_Abort(MPI_COMM_WORLD, 76) - process 1 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [138]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [138]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [138]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [138]PETSC ERROR: #4 main() line 136 in ex_ms.c [138]PETSC ERROR: PETSc Option Table entries: [138]PETSC ERROR: -log_view [138]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[229]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 229 [138]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 138 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [64]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [64]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [64]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [64]PETSC ERROR: #4 main() line 136 in ex_ms.c [64]PETSC ERROR: PETSc Option Table entries: [64]PETSC ERROR: -log_view [64]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-sue/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[64]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 64 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [230]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [230]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [230]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [230]PETSC ERROR: #4 main() line 136 in ex_ms.c [230]PETSC ERROR: PETSc Option Table entries: [230]PETSC ERROR: -log_view [230]PETSC ERROR: -prop_steps 25 perlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [2]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [2]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [2]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [2]PETSC ERROR: #4 main() line 136 in ex_ms.c [2]PETSC ERROR: PETSc Option Table entries: [2]PETSC ERROR: -log_view [2]PETSC ERROR: -prop_steps 25 [2]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [143]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [143]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [143]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [143]PETSC ERROR: #4 main() line 136 in ex_ms.c [143]PETSC ERROR: PETSc Option Table entries: [143]PETSC ERROR: -log_view [143]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[230]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 230 application called MPI_Abort(MPI_COMM_WORLD, 76) - process 2 [143]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 143 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[3]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [3]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [3]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [3]PETSC ERROR: #4 main() line 136 in ex_ms.c [3]PETSC ERROR: PETSc Option Table entries: [3]PETSC ERROR: -log_view [3]PETSC ERROR: -prop_steps 25 [3]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 3 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [66]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [66]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [66]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [66]PETSC ERROR: #4 main() line 136 in ex_ms.c [66]PETSC ERROR: PETSc Option Table entries: [66]PETSC ERROR: -log_view [66]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 4: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[66]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 66 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [232]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [232]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [232]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [232]PETSC ERROR: #4 main() line 136 in ex_ms.c [232]PETSC ERROR: PETSc Option Table entries: [232]PETSC ERROR: -log_view [232]PETSC ERROR: -prop_steps 25 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Error in external library [4]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [4]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [144]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [144]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [144]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [144]PETSC ERROR: #4 main() line 136 in ex_ms.c [144]PETSC ERROR: PETSc Option Table entries: [144]PETSC ERROR: -log_view [144]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[232]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 232 [144]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 144 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [68]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [68]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [68]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [68]PETSC ERROR: #4 main() line 136 in ex_ms.c [68]PETSC ERROR: PETSc Option Table entries: [68]PETSC ERROR: -log_view [68]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[68]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 68 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [233]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [233]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [233]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [233]PETSC ERROR: #4 main() line 136 in ex_ms.c [233]PETSC ERROR: PETSc Option Table entries: [233]PETSC ERROR: -log_view [233]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [146]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [146]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [146]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [146]PETSC ERROR: #4 main() line 136 in ex_ms.c [146]PETSC ERROR: PETSc Option Table entries: [146]PETSC ERROR: -log_view [146]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[233]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 233 [146]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 146 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [70]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [70]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [70]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [70]PETSC ERROR: #4 main() line 136 in ex_ms.c [70]PETSC ERROR: PETSc Option Table entries: [70]PETSC ERROR: -log_view [70]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[70]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 70 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [237]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [237]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [237]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [237]PETSC ERROR: #4 main() line 136 in ex_ms.c [237]PETSC ERROR: PETSc Option Table entries: [237]PETSC ERROR: -log_view [237]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [147]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [147]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [147]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [147]PETSC ERROR: #4 main() line 136 in ex_ms.c [147]PETSC ERROR: PETSc Option Table entries: [147]PETSC ERROR: -log_view [147]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[237]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 237 [147]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 147 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [73]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [73]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [73]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [73]PETSC ERROR: #4 main() line 136 in ex_ms.c [73]PETSC ERROR: PETSc Option Table entries: [73]PETSC ERROR: -log_view [73]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[73]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 73 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [239]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [239]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [239]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [239]PETSC ERROR: #4 main() line 136 in ex_ms.c [239]PETSC ERROR: PETSc Option Table entries: [239]PETSC ERROR: -log_view [239]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [150]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [150]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [150]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [150]PETSC ERROR: #4 main() line 136 in ex_ms.c [150]PETSC ERROR: PETSc Option Table entries: [150]PETSC ERROR: -log_view [150]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[239]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 239 [150]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 150 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [76]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [76]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [76]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [76]PETSC ERROR: #4 main() line 136 in ex_ms.c [76]PETSC ERROR: PETSc Option Table entries: [76]PETSC ERROR: -log_view [76]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[76]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 76 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [240]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [240]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [240]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [240]PETSC ERROR: #4 main() line 136 in ex_ms.c [240]PETSC ERROR: PETSc Option Table entries: [240]PETSC ERROR: -log_view [240]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [151]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [151]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [151]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [151]PETSC ERROR: #4 main() line 136 in ex_ms.c [151]PETSC ERROR: PETSc Option Table entries: [151]PETSC ERROR: -log_view [151]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[240]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 240 [151]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 151 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [78]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [78]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [78]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [78]PETSC ERROR: #4 main() line 136 in ex_ms.c [78]PETSC ERROR: PETSc Option Table entries: [78]PETSC ERROR: -log_view [78]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[78]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 78 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [241]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [241]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [241]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [241]PETSC ERROR: #4 main() line 136 in ex_ms.c [241]PETSC ERROR: PETSc Option Table entries: [241]PETSC ERROR: -log_view [241]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [152]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [152]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [152]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [152]PETSC ERROR: #4 main() line 136 in ex_ms.c [152]PETSC ERROR: PETSc Option Table entries: [152]PETSC ERROR: -log_view [152]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[241]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 241 [152]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 152 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [82]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [82]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [82]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [82]PETSC ERROR: #4 main() line 136 in ex_ms.c [82]PETSC ERROR: PETSc Option Table entries: [82]PETSC ERROR: -log_view [82]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[82]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 82 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [242]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [242]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [242]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [242]PETSC ERROR: #4 main() line 136 in ex_ms.c [242]PETSC ERROR: PETSc Option Table entries: [242]PETSC ERROR: -log_view [242]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [154]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [154]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [154]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [154]PETSC ERROR: #4 main() line 136 in ex_ms.c [154]PETSC ERROR: PETSc Option Table entries: [154]PETSC ERROR: -log_view [154]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[242]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 242 [154]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 154 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [85]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [85]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [85]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [85]PETSC ERROR: #4 main() line 136 in ex_ms.c [85]PETSC ERROR: PETSc Option Table entries: [85]PETSC ERROR: -log_view [85]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[85]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 85 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [244]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [244]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [244]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [244]PETSC ERROR: #4 main() line 136 in ex_ms.c [244]PETSC ERROR: PETSc Option Table entries: [244]PETSC ERROR: -log_view [244]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [156]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [156]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [156]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [156]PETSC ERROR: #4 main() line 136 in ex_ms.c [156]PETSC ERROR: PETSc Option Table entries: [156]PETSC ERROR: -log_view [156]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[244]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 244 [156]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 156 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [87]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [87]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [87]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [87]PETSC ERROR: #4 main() line 136 in ex_ms.c [87]PETSC ERROR: PETSc Option Table entries: [87]PETSC ERROR: -log_view [87]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[87]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 87 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [247]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [247]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [247]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [247]PETSC ERROR: #4 main() line 136 in ex_ms.c [247]PETSC ERROR: PETSc Option Table entries: [247]PETSC ERROR: -log_view [247]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [157]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [157]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [157]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [157]PETSC ERROR: #4 main() line 136 in ex_ms.c [157]PETSC ERROR: PETSc Option Table entries: [157]PETSC ERROR: -log_view [157]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[247]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 247 [157]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 157 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [94]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [94]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [94]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [94]PETSC ERROR: #4 main() line 136 in ex_ms.c [94]PETSC ERROR: PETSc Option Table entries: [94]PETSC ERROR: -log_view [94]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[94]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 94 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [250]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [250]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [250]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [250]PETSC ERROR: #4 main() line 136 in ex_ms.c [250]PETSC ERROR: PETSc Option Table entries: [250]PETSC ERROR: -log_view [250]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [161]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [161]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [161]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [161]PETSC ERROR: #4 main() line 136 in ex_ms.c [161]PETSC ERROR: PETSc Option Table entries: [161]PETSC ERROR: -log_view [161]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[250]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 250 [161]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 161 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [96]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [96]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [96]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [96]PETSC ERROR: #4 main() line 136 in ex_ms.c [96]PETSC ERROR: PETSc Option Table entries: [96]PETSC ERROR: -log_view [96]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[96]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 96 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [251]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [251]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [251]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [251]PETSC ERROR: #4 main() line 136 in ex_ms.c [251]PETSC ERROR: PETSc Option Table entries: [251]PETSC ERROR: -log_view [251]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [162]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [162]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [162]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [162]PETSC ERROR: #4 main() line 136 in ex_ms.c [162]PETSC ERROR: PETSc Option Table entries: [162]PETSC ERROR: -log_view [162]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[251]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 251 [162]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 162 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [97]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [97]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [97]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [97]PETSC ERROR: #4 main() line 136 in ex_ms.c [97]PETSC ERROR: PETSc Option Table entries: [97]PETSC ERROR: -log_view [97]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[97]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 97 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [253]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [253]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [253]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [253]PETSC ERROR: #4 main() line 136 in ex_ms.c [253]PETSC ERROR: PETSc Option Table entries: [253]PETSC ERROR: -log_view [253]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [163]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [163]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [163]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [163]PETSC ERROR: #4 main() line 136 in ex_ms.c [163]PETSC ERROR: PETSc Option Table entries: [163]PETSC ERROR: -log_view [163]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[253]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 253 [163]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 163 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [98]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [98]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [98]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [98]PETSC ERROR: #4 main() line 136 in ex_ms.c [98]PETSC ERROR: PETSc Option Table entries: [98]PETSC ERROR: -log_view [98]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[98]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 98 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [255]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [255]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [255]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [255]PETSC ERROR: #4 main() line 136 in ex_ms.c [255]PETSC ERROR: PETSc Option Table entries: [255]PETSC ERROR: -log_view [255]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [165]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [165]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [165]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [165]PETSC ERROR: #4 main() line 136 in ex_ms.c [165]PETSC ERROR: PETSc Option Table entries: [165]PETSC ERROR: -log_view [165]PETSC ERROR: -prop_steps 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[255]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 255 [165]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 165 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-slinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaruperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [99]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [99]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [99]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [99]PETSC ERROR: #4 main() line 136 in ex_ms.c [99]PETSC ERROR: PETSc Option Table entries: [99]PETSC ERROR: -log_view [99]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[99]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 99 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [193]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [193]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [193]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [193]PETSC ERROR: #4 main() line 136 in ex_ms.c [193]PETSC ERROR: PETSc Option Table entries: [193]PETSC ERROR: -log_view [193]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [168]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [168]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [168]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [168]PETSC ERROR: #4 main() line 136 in ex_ms.c [168]PETSC ERROR: PETSc Option Table entries: [168]PETSC ERROR: -log_view [168]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[193]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 193 [168]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 168 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [102]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [102]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [102]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [102]PETSC ERROR: #4 main() line 136 in ex_ms.c [102]PETSC ERROR: PETSc Option Table entries: [102]PETSC ERROR: -log_view [102]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[102]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 102 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [194]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [194]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [194]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [194]PETSC ERROR: #4 main() line 136 in ex_ms.c [194]PETSC ERROR: PETSc Option Table entries: [194]PETSC ERROR: -log_view [194]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [171]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [171]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [171]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [171]PETSC ERROR: #4 main() line 136 in ex_ms.c [171]PETSC ERROR: PETSc Option Table entries: [171]PETSC ERROR: -log_view [171]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[194]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 194 [171]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 171 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [104]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [104]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [104]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [104]PETSC ERROR: #4 main() line 136 in ex_ms.c [104]PETSC ERROR: PETSc Option Table entries: [104]PETSC ERROR: -log_view [104]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[104]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 104 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [195]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [195]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [195]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [195]PETSC ERROR: #4 main() line 136 in ex_ms.c [195]PETSC ERROR: PETSc Option Table entries: [195]PETSC ERROR: -log_view [195]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [174]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [174]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [174]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [174]PETSC ERROR: #4 main() line 136 in ex_ms.c [174]PETSC ERROR: PETSc Option Table entries: [174]PETSC ERROR: -log_view [174]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[195]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 195 [174]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 174 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [105]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [105]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [105]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [105]PETSC ERROR: #4 main() line 136 in ex_ms.c [105]PETSC ERROR: PETSc Option Table entries: [105]PETSC ERROR: -log_view [105]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[105]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 105 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [200]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [200]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [200]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [200]PETSC ERROR: #4 main() line 136 in ex_ms.c [200]PETSC ERROR: PETSc Option Table entries: [200]PETSC ERROR: -log_view [200]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [175]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [175]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [175]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [175]PETSC ERROR: #4 main() line 136 in ex_ms.c [175]PETSC ERROR: PETSc Option Table entries: [175]PETSC ERROR: -log_view [175]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[200]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 200 [175]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 175 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [108]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [108]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [108]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [108]PETSC ERROR: #4 main() line 136 in ex_ms.c [108]PETSC ERROR: PETSc Option Table entries: [108]PETSC ERROR: -log_view [108]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[108]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 108 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [201]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [201]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [201]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [201]PETSC ERROR: #4 main() line 136 in ex_ms.c [201]PETSC ERROR: PETSc Option Table entries: [201]PETSC ERROR: -log_view [201]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [180]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [180]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [180]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [180]PETSC ERROR: #4 main() line 136 in ex_ms.c [180]PETSC ERROR: PETSc Option Table entries: [180]PETSC ERROR: -log_view [180]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[201]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 201 [180]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 180 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [113]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [113]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [113]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [113]PETSC ERROR: #4 main() line 136 in ex_ms.c [113]PETSC ERROR: PETSc Option Table entries: [113]PETSC ERROR: -log_view [113]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[113]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 113 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [203]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [203]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [203]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [203]PETSC ERROR: #4 main() line 136 in ex_ms.c [203]PETSC ERROR: PETSc Option Table entries: [203]PETSC ERROR: -log_view [203]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [181]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [181]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [181]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [181]PETSC ERROR: #4 main() line 136 in ex_ms.c [181]PETSC ERROR: PETSc Option Table entries: [181]PETSC ERROR: -log_view [181]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[203]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 203 [181]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 181 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [114]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [114]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [114]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [114]PETSC ERROR: #4 main() line 136 in ex_ms.c [114]PETSC ERROR: PETSc Option Table entries: [114]PETSC ERROR: -log_view [114]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[114]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 114 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [210]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [210]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [210]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [210]PETSC ERROR: #4 main() line 136 in ex_ms.c [210]PETSC ERROR: PETSc Option Table entries: [210]PETSC ERROR: -log_view [210]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [182]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [182]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [182]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [182]PETSC ERROR: #4 main() line 136 in ex_ms.c [182]PETSC ERROR: PETSc Option Table entries: [182]PETSC ERROR: -log_view [182]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[210]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 210 [182]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 182 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [116]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [116]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [116]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [116]PETSC ERROR: #4 main() line 136 in ex_ms.c [116]PETSC ERROR: PETSc Option Table entries: [116]PETSC ERROR: -log_view [116]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[116]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 116 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [212]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [212]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [212]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [212]PETSC ERROR: #4 main() line 136 in ex_ms.c [212]PETSC ERROR: PETSc Option Table entries: [212]PETSC ERROR: -log_view [212]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [184]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [184]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [184]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [184]PETSC ERROR: #4 main() line 136 in ex_ms.c [184]PETSC ERROR: PETSc Option Table entries: [184]PETSC ERROR: -log_view [184]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[212]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 212 [184]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 184 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [120]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [120]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [120]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [120]PETSC ERROR: #4 main() line 136 in ex_ms.c [120]PETSC ERROR: PETSc Option Table entries: [120]PETSC ERROR: -log_view [120]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[120]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 120 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [220]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [220]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [220]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [220]PETSC ERROR: #4 main() line 136 in ex_ms.c [220]PETSC ERROR: PETSc Option Table entries: [220]PETSC ERROR: -log_view [220]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [187]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [187]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [187]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [187]PETSC ERROR: #4 main() line 136 in ex_ms.c [187]PETSC ERROR: PETSc Option Table entries: [187]PETSC ERROR: -log_view [187]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[220]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 220 [187]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 187 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [124]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [124]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [124]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [124]PETSC ERROR: #4 main() line 136 in ex_ms.c [124]PETSC ERROR: PETSc Option Table entries: [124]PETSC ERROR: -log_view [124]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[124]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 124 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [225]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [225]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [225]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [225]PETSC ERROR: #4 main() line 136 in ex_ms.c [225]PETSC ERROR: PETSc Option Table entries: [225]PETSC ERROR: -log_view [225]PETSC ERROR: -prop_steps 25 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [188]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [188]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [188]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [188]PETSC ERROR: #4 main() line 136 in ex_ms.c [188]PETSC ERROR: PETSc Option Table entries: [188]PETSC ERROR: -log_view [188]PETSC ERROR: -prop_steps 25 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[225]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 225 [188]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 188 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarsuperlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [126]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [126]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [126]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [126]PETSC ERROR: #4 main() line 136 in ex_ms.c [126]PETSC ERROR: PETSc Option Table entries: [126]PETSC ERROR: -log_view [126]PETSC ERROR: -prop_steps 25 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-[126]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 126 superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [191]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [191]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [191]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [191]PETSC ERROR: #4 main() line 136 in ex_ms.c [191]PETSC ERROR: PETSc Option Table entries: [191]PETSC ERROR: -log_view [191]PETSC ERROR: -prop_steps 25 [191]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 191 [4]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [4]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [4]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/liHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 6: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [6]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [6]PETSC ERROR: Error in external library [6]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [6]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [6]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [6]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [6]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/liHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 9: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [9]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [9]PETSC ERROR: Error in external library [9]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [9]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [9]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [9]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [9]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/liHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 10: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [10]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [10]PETSC ERROR: Error in external library [10]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [10]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [10]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [10]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [10]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [11]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [11]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [11]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [11]PETSC ERROR: #4 main() line 136 in ex_ms.c [11]PETSC ERROR: PETSc Option Table entries: [11]PETSC ERROR: -log_view [11]PETSC ERROR: -prop_steps 25 [11]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 11 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 13: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [13]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [13]PETSC ERROR: Error in external library [13]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [13]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [13]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [13]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [13]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 15: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [15]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [15]PETSC ERROR: Error in external library [15]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [15]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [15]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [15]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [15]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 19: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [19]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [19]PETSC ERROR: Error in external library [19]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [19]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [19]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [19]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [19]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 20: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [20]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [20]PETSC ERROR: Error in external library [20]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [20]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [20]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [20]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [20]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 21: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [21]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [21]PETSC ERROR: Error in external library [21]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [21]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [21]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [21]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [21]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 23: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [23]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [23]PETSC ERROR: Error in external library [23]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [23]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [23]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [23]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [23]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [26]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [26]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [26]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [26]PETSC ERROR: #4 main() line 136 in ex_ms.c [26]PETSC ERROR: PETSc Option Table entries: [26]PETSC ERROR: -log_view [26]PETSC ERROR: -prop_steps 25 [26]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 26 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 28: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [28]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [28]PETSC ERROR: Error in external library [28]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [28]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [28]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [28]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [28]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 29: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [29]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [29]PETSC ERROR: Error in external library [29]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [29]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [29]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [29]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [29]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 30: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [30]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [30]PETSC ERROR: Error in external library [30]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [30]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [30]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [30]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [30]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 33: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [33]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [33]PETSC ERROR: Error in external library [33]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [33]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [33]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [33]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [33]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 35: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [35]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [35]PETSC ERROR: Error in external library [35]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [35]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [35]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [35]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [35]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [36]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [36]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [36]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [36]PETSC ERROR: #4 main() line 136 in ex_ms.c [36]PETSC ERROR: PETSc Option Table entries: [36]PETSC ERROR: -log_view [36]PETSC ERROR: -prop_steps 25 [36]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 36 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 37: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [37]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [37]PETSC ERROR: Error in external library [37]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [37]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [37]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [37]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [37]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 38: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [38]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [38]PETSC ERROR: Error in external library [38]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [38]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [38]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [38]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [38]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [39]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [39]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [39]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [39]PETSC ERROR: #4 main() line 136 in ex_ms.c [39]PETSC ERROR: PETSc Option Table entries: [39]PETSC ERROR: -log_view [39]PETSC ERROR: -prop_steps 25 [39]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 39 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 40: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [40]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [40]PETSC ERROR: Error in external library [40]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [40]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [40]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [40]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [40]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 41: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [41]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [41]PETSC ERROR: Error in external library [41]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [41]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [41]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [41]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [41]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 42: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [42]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [42]PETSC ERROR: Error in external library [42]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [42]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [42]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [42]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [42]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 43: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [43]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [43]PETSC ERROR: Error in external library [43]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [43]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [43]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [43]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [43]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 44: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [44]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [44]PETSC ERROR: Error in external library [44]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [44]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [44]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [44]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [44]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 45: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [45]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [45]PETSC ERROR: Error in external library [45]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [45]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [45]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [45]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [45]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 46: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [46]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [46]PETSC ERROR: Error in external library [46]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [46]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [46]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [46]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [46]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 47: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [47]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [47]PETSC ERROR: Error in external library [47]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [47]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [47]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [47]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [47]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 48: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [48]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [48]PETSC ERROR: Error in external library [48]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [48]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [48]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [48]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [48]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 49: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [49]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [49]PETSC ERROR: Error in external library [49]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [49]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [49]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [49]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [49]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 50: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [50]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [50]PETSC ERROR: Error in external library [50]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [50]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [50]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [50]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [50]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 51: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [51]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [51]PETSC ERROR: Error in external library [51]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [51]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [51]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [51]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [51]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [52]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [52]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [52]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [52]PETSC ERROR: #4 main() line 136 in ex_ms.c [52]PETSC ERROR: PETSc Option Table entries: [52]PETSC ERROR: -log_view [52]PETSC ERROR: -prop_steps 25 [52]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 52 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 53: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [53]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [53]PETSC ERROR: Error in external library [53]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [53]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [53]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [53]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [53]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [54]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [54]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [54]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [54]PETSC ERROR: #4 main() line 136 in ex_ms.c [54]PETSC ERROR: PETSc Option Table entries: [54]PETSC ERROR: -log_view [54]PETSC ERROR: -prop_steps 25 [54]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 54 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 57: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [57]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [57]PETSC ERROR: Error in external library [57]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [57]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [57]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [57]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [57]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 58: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [58]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [58]PETSC ERROR: Error in external library [58]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [58]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [58]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [58]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [58]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 59: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [59]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [59]PETSC ERROR: Error in external library [59]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [59]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [59]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [59]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [59]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 60: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [60]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [60]PETSC ERROR: Error in external library [60]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [60]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [60]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [60]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [60]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 61: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [61]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [61]PETSC ERROR: Error in external library [61]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [61]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [61]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [61]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [61]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [62]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [62]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [62]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [62]PETSC ERROR: #4 main() line 136 in ex_ms.c [62]PETSC ERROR: PETSc Option Table entries: [62]PETSC ERROR: -log_view [62]PETSC ERROR: -prop_steps 25 [62]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 62 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 63: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [63]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [63]PETSC ERROR: Error in external library [63]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [63]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [63]PETSC ERROR: Petsc Release Version 3.12.0, Sep, 29, 2019 [63]PETSC ERROR: ./ex_ms on a named apsxrmd-0001 by sajid Thu Oct 10 12:03:55 2019 [63]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.12.0-dhpnwwpsdks6asnb4wjywjyms24dlmhl --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lnux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [0]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [0]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [0]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [0]PETSC ERROR: #4 main() line 136 in ex_ms.c [0]PETSC ERROR: PETSc Option Table entries: [0]PETSC ERROR: -log_view [0]PETSC ERROR: -prop_steps 25 [0]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 0 nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [4]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [4]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [4]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [4]PETSC ERROR: #4 main() line 136 in ex_ms.c [4]PETSC ERROR: PETSc Option Table entries: [4]PETSC ERROR: -log_view [4]PETSC ERROR: -prop_steps 25 [4]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 4 nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [6]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [6]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [6]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [6]PETSC ERROR: #4 main() line 136 in ex_ms.c [6]PETSC ERROR: PETSc Option Table entries: [6]PETSC ERROR: -log_view [6]PETSC ERROR: -prop_steps 25 [6]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 6 nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [9]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [9]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [9]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [9]PETSC ERROR: #4 main() line 136 in ex_ms.c [9]PETSC ERROR: PETSc Option Table entries: [9]PETSC ERROR: -log_view [9]PETSC ERROR: -prop_steps 25 [9]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 9 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [10]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [10]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [10]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [10]PETSC ERROR: #4 main() line 136 in ex_ms.c [10]PETSC ERROR: PETSc Option Table entries: [10]PETSC ERROR: -log_view [10]PETSC ERROR: -prop_steps 25 [10]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 10 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [13]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [13]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [13]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [13]PETSC ERROR: #4 main() line 136 in ex_ms.c [13]PETSC ERROR: PETSc Option Table entries: [13]PETSC ERROR: -log_view [13]PETSC ERROR: -prop_steps 25 [13]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 13 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [15]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [15]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [15]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [15]PETSC ERROR: #4 main() line 136 in ex_ms.c [15]PETSC ERROR: PETSc Option Table entries: [15]PETSC ERROR: -log_view [15]PETSC ERROR: -prop_steps 25 [15]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 15 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [19]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [19]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [19]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [19]PETSC ERROR: #4 main() line 136 in ex_ms.c [19]PETSC ERROR: PETSc Option Table entries: [19]PETSC ERROR: -log_view [19]PETSC ERROR: -prop_steps 25 [19]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 19 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [20]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [20]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [20]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [20]PETSC ERROR: #4 main() line 136 in ex_ms.c [20]PETSC ERROR: PETSc Option Table entries: [20]PETSC ERROR: -log_view [20]PETSC ERROR: -prop_steps 25 [20]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 20 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [21]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [21]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [21]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [21]PETSC ERROR: #4 main() line 136 in ex_ms.c [21]PETSC ERROR: PETSc Option Table entries: [21]PETSC ERROR: -log_view [21]PETSC ERROR: -prop_steps 25 [21]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 21 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [23]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [23]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [23]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [23]PETSC ERROR: #4 main() line 136 in ex_ms.c [23]PETSC ERROR: PETSc Option Table entries: [23]PETSC ERROR: -log_view [23]PETSC ERROR: -prop_steps 25 [23]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 23 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [28]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [28]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [28]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [28]PETSC ERROR: #4 main() line 136 in ex_ms.c [28]PETSC ERROR: PETSc Option Table entries: [28]PETSC ERROR: -log_view [28]PETSC ERROR: -prop_steps 25 [28]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 28 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [29]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [29]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [29]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [29]PETSC ERROR: #4 main() line 136 in ex_ms.c [29]PETSC ERROR: PETSc Option Table entries: [29]PETSC ERROR: -log_view [29]PETSC ERROR: -prop_steps 25 [29]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 29 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [30]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [30]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [30]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [30]PETSC ERROR: #4 main() line 136 in ex_ms.c [30]PETSC ERROR: PETSc Option Table entries: [30]PETSC ERROR: -log_view [30]PETSC ERROR: -prop_steps 25 [30]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 30 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [33]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [33]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [33]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [33]PETSC ERROR: #4 main() line 136 in ex_ms.c [33]PETSC ERROR: PETSc Option Table entries: [33]PETSC ERROR: -log_view [33]PETSC ERROR: -prop_steps 25 [33]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 33 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [35]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [35]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [35]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [35]PETSC ERROR: #4 main() line 136 in ex_ms.c [35]PETSC ERROR: PETSc Option Table entries: [35]PETSC ERROR: -log_view [35]PETSC ERROR: -prop_steps 25 [35]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 35 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [37]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [37]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [37]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [37]PETSC ERROR: #4 main() line 136 in ex_ms.c [37]PETSC ERROR: PETSc Option Table entries: [37]PETSC ERROR: -log_view [37]PETSC ERROR: -prop_steps 25 [37]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 37 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [38]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [38]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [38]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [38]PETSC ERROR: #4 main() line 136 in ex_ms.c [38]PETSC ERROR: PETSc Option Table entries: [38]PETSC ERROR: -log_view [38]PETSC ERROR: -prop_steps 25 [38]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 38 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [40]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [40]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [40]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [40]PETSC ERROR: #4 main() line 136 in ex_ms.c [40]PETSC ERROR: PETSc Option Table entries: [40]PETSC ERROR: -log_view [40]PETSC ERROR: -prop_steps 25 [40]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 40 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [41]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [41]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [41]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [41]PETSC ERROR: #4 main() line 136 in ex_ms.c [41]PETSC ERROR: PETSc Option Table entries: [41]PETSC ERROR: -log_view [41]PETSC ERROR: -prop_steps 25 [41]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 41 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [42]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [42]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [42]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [42]PETSC ERROR: #4 main() line 136 in ex_ms.c [42]PETSC ERROR: PETSc Option Table entries: [42]PETSC ERROR: -log_view [42]PETSC ERROR: -prop_steps 25 [42]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 42 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [43]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [43]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [43]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [43]PETSC ERROR: #4 main() line 136 in ex_ms.c [43]PETSC ERROR: PETSc Option Table entries: [43]PETSC ERROR: -log_view [43]PETSC ERROR: -prop_steps 25 [43]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 43 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [44]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [44]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [44]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [44]PETSC ERROR: #4 main() line 136 in ex_ms.c [44]PETSC ERROR: PETSc Option Table entries: [44]PETSC ERROR: -log_view [44]PETSC ERROR: -prop_steps 25 [44]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 44 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [45]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [45]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [45]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [45]PETSC ERROR: #4 main() line 136 in ex_ms.c [45]PETSC ERROR: PETSc Option Table entries: [45]PETSC ERROR: -log_view [45]PETSC ERROR: -prop_steps 25 [45]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 45 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [46]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [46]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [46]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [46]PETSC ERROR: #4 main() line 136 in ex_ms.c [46]PETSC ERROR: PETSc Option Table entries: [46]PETSC ERROR: -log_view [46]PETSC ERROR: -prop_steps 25 [46]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 46 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [47]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [47]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [47]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [47]PETSC ERROR: #4 main() line 136 in ex_ms.c [47]PETSC ERROR: PETSc Option Table entries: [47]PETSC ERROR: -log_view [47]PETSC ERROR: -prop_steps 25 [47]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 47 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [48]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [48]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [48]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [48]PETSC ERROR: #4 main() line 136 in ex_ms.c [48]PETSC ERROR: PETSc Option Table entries: [48]PETSC ERROR: -log_view [48]PETSC ERROR: -prop_steps 25 [48]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 48 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [49]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [49]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [49]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [49]PETSC ERROR: #4 main() line 136 in ex_ms.c [49]PETSC ERROR: PETSc Option Table entries: [49]PETSC ERROR: -log_view [49]PETSC ERROR: -prop_steps 25 [49]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 49 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [50]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [50]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [50]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [50]PETSC ERROR: #4 main() line 136 in ex_ms.c [50]PETSC ERROR: PETSc Option Table entries: [50]PETSC ERROR: -log_view [50]PETSC ERROR: -prop_steps 25 [50]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 50 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [51]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [51]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [51]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [51]PETSC ERROR: #4 main() line 136 in ex_ms.c [51]PETSC ERROR: PETSc Option Table entries: [51]PETSC ERROR: -log_view [51]PETSC ERROR: -prop_steps 25 [51]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 51 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [53]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [53]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [53]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [53]PETSC ERROR: #4 main() line 136 in ex_ms.c [53]PETSC ERROR: PETSc Option Table entries: [53]PETSC ERROR: -log_view [53]PETSC ERROR: -prop_steps 25 [53]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 53 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [57]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [57]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [57]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [57]PETSC ERROR: #4 main() line 136 in ex_ms.c [57]PETSC ERROR: PETSc Option Table entries: [57]PETSC ERROR: -log_view [57]PETSC ERROR: -prop_steps 25 [57]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 57 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [58]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [58]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [58]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [58]PETSC ERROR: #4 main() line 136 in ex_ms.c [58]PETSC ERROR: PETSc Option Table entries: [58]PETSC ERROR: -log_view [58]PETSC ERROR: -prop_steps 25 [58]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 58 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [59]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [59]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [59]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [59]PETSC ERROR: #4 main() line 136 in ex_ms.c [59]PETSC ERROR: PETSc Option Table entries: [59]PETSC ERROR: -log_view [59]PETSC ERROR: -prop_steps 25 [59]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 59 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [60]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [60]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [60]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [60]PETSC ERROR: #4 main() line 136 in ex_ms.c [60]PETSC ERROR: PETSc Option Table entries: [60]PETSC ERROR: -log_view [60]PETSC ERROR: -prop_steps 25 [60]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 60 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [61]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [61]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [61]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [61]PETSC ERROR: #4 main() line 136 in ex_ms.c [61]PETSC ERROR: PETSc Option Table entries: [61]PETSC ERROR: -log_view [61]PETSC ERROR: -prop_steps 25 [61]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 61 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=1 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack=0 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2uxjs6gihdopyqjjyapxloxmopt3fyuf --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-ilq6ip5ckg7shv5pbbqpnqoihqag4x4e --with-mumps=0 --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-rfi7e56hwc7gcek5w5er3evkb7cefks2 --with-superlu_dist=0 --with-suitesparse=0 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [63]PETSC ERROR: #1 VecView_MPI_HDF5() line 814 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [63]PETSC ERROR: #2 VecView_MPI() line 951 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/impls/mpi/pdvec.c [63]PETSC ERROR: #3 VecView() line 574 in /scratch/sajid/spack-stage/spack-stage-GN2fOu/spack-src/src/vec/vec/interface/vector.c [63]PETSC ERROR: #4 main() line 136 in ex_ms.c [63]PETSC ERROR: PETSc Option Table entries: [63]PETSC ERROR: -log_view [63]PETSC ERROR: -prop_steps 25 [63]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 63 srun: error: apsxrmd-0004: tasks 192-255: Killed srun: error: apsxrmd-0002: tasks 64-127: Killed srun: error: apsxrmd-0003: tasks 128-191: Killed srun: error: apsxrmd-0001: tasks 0-63: Killed