<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">It should be —with-batch=1<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On May 31, 2019, at 10:21 PM, Ma, Xiao via petsc-users <<a href="mailto:petsc-users@mcs.anl.gov" class="">petsc-users@mcs.anl.gov</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div style="font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;" class="">Hi Satish,</div><div style="font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;" class=""><br class=""></div><div style="font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;" class="">I have added these configure options</div><div style="font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;" class=""><span style="color: rgb(32, 31, 30); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important;" class=""> --batch=1 --known-64-bit-blas-indices=0 -known-mpi-shared-libraries=0</span><br style="color: rgb(32, 31, 30); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255);" class=""></div><div style="font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;" class=""><span style="color: rgb(32, 31, 30); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important;" class=""><br class=""></span></div><div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><font color="#201f1e" class=""><span style="font-size: 14.6667px;" class="">It is still hanging</span></font></div><div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><font color="#201f1e" class=""><span style="font-size: 14.6667px;" class=""><br class=""></span></font></div><div style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><font color="#201f1e" class=""><span style="font-size: 14.6667px;" class="">Best,<br class="">Xiao</span></font></div><div id="appendonsend" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""></div><hr tabindex="-1" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; display: inline-block; width: 969.21875px;" class=""><span style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;" class=""></span><div id="divRplyFwdMsg" dir="ltr" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;" class=""><font face="Calibri, sans-serif" style="font-size: 11pt;" class=""><b class="">From:</b><span class="Apple-converted-space"> </span>Balay, Satish <<a href="mailto:balay@mcs.anl.gov" class="">balay@mcs.anl.gov</a>><br class=""><b class="">Sent:</b><span class="Apple-converted-space"> </span>Friday, May 31, 2019 12:35<br class=""><b class="">To:</b><span class="Apple-converted-space"> </span>Ma, Xiao<br class=""><b class="">Cc:</b><span class="Apple-converted-space"> </span><a href="mailto:petsc-users@mcs.anl.gov" class="">petsc-users@mcs.anl.gov</a><br class=""><b class="">Subject:</b><span class="Apple-converted-space"> </span>Re: [petsc-users] Configuration process of Petsc hanging</font><div class=""> </div></div><div class="BodyFragment" style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><font size="2" class=""><span style="font-size: 11pt;" class=""><div class="PlainText">PETSc configure is attempting to run some MPI binaries - and that is hanging with this MPI.<br class=""><br class="">You can retry with the options:<br class=""><br class=""> --batch=1 --known-64-bit-blas-indices=0 -known-mpi-shared-libraries=0<br class=""><br class="">[and follow instructions provided by configure]<br class=""><br class="">Satish<br class=""><br class=""><br class=""><br class="">On Fri, 31 May 2019, Ma, Xiao via petsc-users wrote:<br class=""><br class="">> Hi ,<br class="">><span class="Apple-converted-space"> </span><br class="">> I am trying to install Pylith which is a earthquake simulator using Petsc library, I am building it in PSC bridge cluster, during the steps of building Petsc, the configuration hanging at<br class="">><span class="Apple-converted-space"> </span><br class="">> TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:247)<br class="">><span class="Apple-converted-space"> </span><br class="">><span class="Apple-converted-space"> </span><br class="">> I am not sure if this has to with the configuration setup of the mpi version I am using.<br class="">><span class="Apple-converted-space"> </span><br class="">> Any help would be deeply appreciated.<br class="">><span class="Apple-converted-space"> </span><br class="">> I am attaching the configure options here:<br class="">><span class="Apple-converted-space"> </span><br class="">><span class="Apple-converted-space"> </span><br class="">> Saving to: ‘petsc-pylith-2.2.1.tgz’<br class="">><span class="Apple-converted-space"> </span><br class="">> 100%[===========================================================>] 10,415,016 37.3MB/s in 0.3s<br class="">><span class="Apple-converted-space"> </span><br class="">> 2019-05-31 14:03:13 (37.3 MB/s) - ‘petsc-pylith-2.2.1.tgz’ saved [10415016/10415016]<br class="">><span class="Apple-converted-space"> </span><br class="">> FINISHED --2019-05-31 14:03:13--<br class="">> Total wall clock time: 1.1s<br class="">> Downloaded: 1 files, 9.9M in 0.3s (37.3 MB/s)<br class="">> /usr/bin/tar -zxf petsc-pylith-2.2.1.tgz<br class="">> cd petsc-pylith && \<br class="">> ./configure --prefix=/home/xm12345/pylith \<br class="">> --with-c2html=0 --with-x=0 \<br class="">> --with-clanguage=C \<br class="">> --with-mpicompilers=1 \<br class="">> --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 \<br class="">> --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with -debugging=0 --with-fc=0 CPPFLAGS="-I/home/xm12345/pylith/include -I/home/xm12345/pylith/include " L DFLAGS="-L/home/xm12345/pylith/lib -L/home/xm12345/pylith/lib64 -L/home/xm12345/pylith/lib -L/home/xm 12345/pylith/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS="" \<br class="">> PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith PETSC_ARCH=arch-pylith && \<br class="">> make -f gmakefile -j2 PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith PETSC_ARCH=arch-pylit h && \<br class="">> make PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith install && \<br class="">> make PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith test && \<br class="">> touch ../installed_petsc<br class="">> ===============================================================================<br class="">> Configuring PETSc to compile on your system<br class="">> ===============================================================================<br class="">> =============================================================================== ***** WARNING: MAKEFLAGS (set to w) found in environment variables - ignoring use ./configure MAKEFLAGS=$MAKEFLAGS if you really want to use that value ****** =============================================================================== =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:247)<br class="">><span class="Apple-converted-space"> </span><br class="">><span class="Apple-converted-space"> </span><br class="">><span class="Apple-converted-space"> </span></div></span></font></div></div></blockquote></div><br class=""></body></html>