<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=Windows-1252">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
</head>
<body dir="ltr">
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Hi Satish,</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
I have added these configure options</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(32, 31, 30); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important"> --batch=1
--known-64-bit-blas-indices=0 -known-mpi-shared-libraries=0</span><br style="color: rgb(32, 31, 30); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(32, 31, 30); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important"><br>
</span></div>
<div style=""><font color="#201f1e"><span style="font-size: 14.6667px;">It is still hanging</span></font></div>
<div style=""><font color="#201f1e"><span style="font-size: 14.6667px;"><br>
</span></font></div>
<div style=""><font color="#201f1e"><span style="font-size: 14.6667px;">Best,<br>
Xiao</span></font></div>
<div id="appendonsend"></div>
<hr style="display:inline-block;width:98%" tabindex="-1">
<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Balay, Satish <balay@mcs.anl.gov><br>
<b>Sent:</b> Friday, May 31, 2019 12:35<br>
<b>To:</b> Ma, Xiao<br>
<b>Cc:</b> petsc-users@mcs.anl.gov<br>
<b>Subject:</b> Re: [petsc-users] Configuration process of Petsc hanging</font>
<div> </div>
</div>
<div class="BodyFragment"><font size="2"><span style="font-size:11pt;">
<div class="PlainText">PETSc configure is attempting to run some MPI binaries - and that is hanging with this MPI.<br>
<br>
You can retry with the options:<br>
<br>
--batch=1 --known-64-bit-blas-indices=0 -known-mpi-shared-libraries=0<br>
<br>
[and follow instructions provided by configure]<br>
<br>
Satish<br>
<br>
<br>
<br>
On Fri, 31 May 2019, Ma, Xiao via petsc-users wrote:<br>
<br>
> Hi ,<br>
> <br>
> I am trying to install Pylith which is a earthquake simulator using Petsc library, I am building it in PSC bridge cluster, during the steps of building Petsc, the configuration hanging at<br>
> <br>
> TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:247)<br>
> <br>
> <br>
> I am not sure if this has to with the configuration setup of the mpi version I am using.<br>
> <br>
> Any help would be deeply appreciated.<br>
> <br>
> I am attaching the configure options here:<br>
> <br>
> <br>
> Saving to: ‘petsc-pylith-2.2.1.tgz’<br>
> <br>
> 100%[===========================================================>] 10,415,016 37.3MB/s in 0.3s<br>
> <br>
> 2019-05-31 14:03:13 (37.3 MB/s) - ‘petsc-pylith-2.2.1.tgz’ saved [10415016/10415016]<br>
> <br>
> FINISHED --2019-05-31 14:03:13--<br>
> Total wall clock time: 1.1s<br>
> Downloaded: 1 files, 9.9M in 0.3s (37.3 MB/s)<br>
> /usr/bin/tar -zxf petsc-pylith-2.2.1.tgz<br>
> cd petsc-pylith && \<br>
> ./configure --prefix=/home/xm12345/pylith \<br>
> --with-c2html=0 --with-x=0 \<br>
> --with-clanguage=C \<br>
> --with-mpicompilers=1 \<br>
> --with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 \<br>
> --download-chaco=1 --download-ml=1 --download-f2cblaslapack=1 --with-hdf5=1 --with -debugging=0 --with-fc=0 CPPFLAGS="-I/home/xm12345/pylith/include -I/home/xm12345/pylith/include " L DFLAGS="-L/home/xm12345/pylith/lib
-L/home/xm12345/pylith/lib64 -L/home/xm12345/pylith/lib -L/home/xm 12345/pylith/lib64 " CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS="" \<br>
> PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith PETSC_ARCH=arch-pylith && \<br>
> make -f gmakefile -j2 PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith PETSC_ARCH=arch-pylit h && \<br>
> make PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith install && \<br>
> make PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith test && \<br>
> touch ../installed_petsc<br>
> ===============================================================================<br>
> Configuring PETSc to compile on your system<br>
> ===============================================================================<br>
> =============================================================================== ***** WARNING: MAKEFLAGS (set to w) found in environment variables - ignoring use
./configure MAKEFLAGS=$MAKEFLAGS if you really want to use that value ****** =============================================================================== ===============================================================================
WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done
when configured using --with-debugging=1 =============================================================================== TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:247)<br>
> <br>
> <br>
> <br>
</div>
</span></font></div>
</body>
</html>